Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c1d3' (ED25519) to the list of known hosts. Running: /usr/bin/copr-rpmbuild --verbose --drop-resultdir --build-id 5276440 --chroot fedora-rawhide-x86_64 --detached Version: 0.62 PID: 15411 Logging PID: 15412 Task: {'appstream': True, 'background': True, 'build_id': 5276440, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': 'd6eab23354c7f7477e7c9a04b32f9e7bbf88fa51', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/thrnciar/python-packaging/seqan2', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'seqan2', 'package_version': '2.4.0-18', 'project_dirname': 'python-packaging', 'project_name': 'python-packaging', 'project_owner': 'thrnciar', 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/thrnciar/python-packaging/fedora-rawhide-x86_64/', 'id': 'copr_base', 'name': 'Copr repository'}], 'sandbox': 'thrnciar/python-packaging--thrnciar', 'source_json': {}, 'source_type': None, 'submitter': 'thrnciar', 'tags': [], 'task_id': '5276440-fedora-rawhide-x86_64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/thrnciar/python-packaging/seqan2 /var/lib/copr-rpmbuild/workspace/workdir-jjz5cud0/seqan2 --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/thrnciar/python-packaging/seqan2', '/var/lib/copr-rpmbuild/workspace/workdir-jjz5cud0/seqan2', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-jjz5cud0/seqan2'... Running: git checkout d6eab23354c7f7477e7c9a04b32f9e7bbf88fa51 cmd: ['git', 'checkout', 'd6eab23354c7f7477e7c9a04b32f9e7bbf88fa51'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-jjz5cud0/seqan2 rc: 0 stdout: stderr: Note: switching to 'd6eab23354c7f7477e7c9a04b32f9e7bbf88fa51'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at d6eab23 automatic import of seqan2 Running: copr-distgit-client sources /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-jjz5cud0/seqan2 rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading seqan-seqan-v2.4.0.tar.gz INFO: Calling: curl -H Pragma: -o seqan-seqan-v2.4.0.tar.gz --location --remote-time --show-error --fail https://copr-dist-git.fedorainfracloud.org/repo/pkgs/thrnciar/python-packaging/seqan2/seqan-seqan-v2.4.0.tar.gz/md5/d899821e295fed0a22e08099f40cbc17/seqan-seqan-v2.4.0.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 104M 100 104M 0 0 27.0M 0 0:00:03 0:00:03 --:--:-- 27.0M INFO: Reading stdout from command: md5sum seqan-seqan-v2.4.0.tar.gz Running (timeout=18000): unbuffer mock --buildsrpm --spec /var/lib/copr-rpmbuild/workspace/workdir-jjz5cud0/seqan2/seqan2.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-jjz5cud0/seqan2 --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1674330935.721363 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 3.5 starting (python version = 3.11.0, NVR = mock-3.5-1.fc37)... Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-jjz5cud0/seqan2/seqan2.spec) Config(fedora-rawhide-x86_64) Start: clean chroot Finish: clean chroot Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1674330935.721363/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 3.5 INFO: Mock Version: 3.5 Start(bootstrap): dnf install No matches found for the following disable plugin patterns: local, spacewalk, versionlock Updating Subscription Management repositories. Unable to read consumer identity This system is not registered with an entitlement server. You can use subscription-manager to register. Copr repository 50 MB/s | 16 MB 00:00 fedora 25 MB/s | 65 MB 00:02 Last metadata expiration check: 0:00:04 ago on Sat Jan 21 19:55:42 2023. Dependencies resolved. ================================================================================ Package Arch Version Repo Size ================================================================================ Installing: dnf noarch 4.14.0-2.fc38 copr_base 467 k dnf-plugins-core noarch 4.3.1-2.fc38 copr_base 34 k Installing dependencies: alternatives x86_64 1.21-1.fc38 fedora 38 k audit-libs x86_64 3.0.9-3.fc38 copr_base 117 k basesystem noarch 11-14.fc37 fedora 7.0 k bash x86_64 5.2.15-1.fc38 fedora 1.8 M bzip2-libs x86_64 1.0.8-12.fc37 fedora 41 k ca-certificates noarch 2022.2.54-5.fc37 fedora 829 k coreutils x86_64 9.1-10.fc38 fedora 1.1 M coreutils-common x86_64 9.1-10.fc38 fedora 2.0 M crypto-policies noarch 20221215-2.gita4c31a3.fc38 copr_base 64 k curl x86_64 7.87.0-3.fc38 copr_base 347 k cyrus-sasl-lib x86_64 2.1.28-8.fc38 fedora 792 k dbus-libs x86_64 1:1.14.4-1.fc38 fedora 156 k dnf-data noarch 4.14.0-2.fc38 copr_base 41 k elfutils-default-yama-scope noarch 0.188-3.fc38 fedora 15 k elfutils-libelf x86_64 0.188-3.fc38 fedora 196 k elfutils-libs x86_64 0.188-3.fc38 fedora 257 k expat x86_64 2.5.0-1.fc38 fedora 110 k fedora-gpg-keys noarch 38-0.3 fedora 125 k fedora-release noarch 38-0.15 fedora 11 k fedora-release-common noarch 38-0.15 fedora 21 k fedora-release-identity-basic noarch 38-0.15 fedora 12 k fedora-repos noarch 38-0.3 fedora 10 k fedora-repos-rawhide noarch 38-0.3 fedora 9.7 k file-libs x86_64 5.42-5.fc38 copr_base 676 k filesystem x86_64 3.18-2.fc37 fedora 1.1 M findutils x86_64 1:4.9.0-2.fc37 fedora 492 k gawk x86_64 5.1.1-4.fc37 fedora 1.0 M gdbm-libs x86_64 1:1.23-2.fc37 fedora 56 k glib2 x86_64 2.74.1-3.fc38 copr_base 2.7 M glibc x86_64 2.36.9000-23.fc38 copr_base 2.1 M glibc-common x86_64 2.36.9000-23.fc38 copr_base 307 k glibc-minimal-langpack x86_64 2.36.9000-23.fc38 copr_base 34 k gmp x86_64 1:6.2.1-3.fc37 fedora 315 k gnupg2 x86_64 2.4.0-1.fc38 fedora 2.6 M gnutls x86_64 3.7.8-11.fc38 copr_base 1.1 M gpgme x86_64 1.17.1-3.fc38 fedora 210 k grep x86_64 3.8-2.fc38 fedora 292 k ima-evm-utils x86_64 1.4-6.fc37 fedora 63 k json-c x86_64 0.16-3.fc38 fedora 41 k keyutils-libs x86_64 1.6.1-5.fc37 fedora 31 k krb5-libs x86_64 1.20.1-7.fc38 copr_base 722 k libacl x86_64 2.3.1-4.fc37 fedora 23 k libarchive x86_64 3.6.1-3.fc38 fedora 397 k libassuan x86_64 2.5.5-5.fc37 fedora 67 k libattr x86_64 2.5.1-5.fc37 fedora 18 k libb2 x86_64 0.98.1-7.fc37 fedora 25 k libblkid x86_64 2.38.1-3.fc38 fedora 106 k libbrotli x86_64 1.0.9-11.fc38 copr_base 317 k libcap x86_64 2.48-5.fc37 fedora 67 k libcap-ng x86_64 0.8.3-5.fc38 copr_base 33 k libcom_err x86_64 1.46.5-3.fc37 fedora 25 k libcomps x86_64 0.1.18-5.fc38 copr_base 77 k libcurl x86_64 7.87.0-3.fc38 copr_base 304 k libdnf x86_64 0.68.0-2.fc38 copr_base 653 k libevent x86_64 2.1.12-8.fc38 copr_base 258 k libffi x86_64 3.4.4-1.fc38 fedora 38 k libfsverity x86_64 1.4-8.fc37 fedora 19 k libgcc x86_64 13.0.1-0.1.fc38 fedora 93 k libgcrypt x86_64 1.10.1-6.fc38 fedora 511 k libgomp x86_64 13.0.1-0.1.fc38 fedora 300 k libgpg-error x86_64 1.46-1.fc38 fedora 227 k libidn2 x86_64 2.3.4-1.fc38 fedora 160 k libksba x86_64 1.6.3-1.fc38 fedora 158 k libmodulemd x86_64 2.14.0-5.fc38 copr_base 234 k libmount x86_64 2.38.1-3.fc38 fedora 135 k libnghttp2 x86_64 1.51.0-2.fc38 copr_base 76 k libnsl2 x86_64 2.0.0-4.fc37 fedora 30 k libpsl x86_64 0.21.2-2.fc38 copr_base 66 k librepo x86_64 1.15.1-2.fc38 copr_base 97 k libreport-filesystem noarch 2.17.6-2.fc38 copr_base 14 k libselinux x86_64 3.5-0.rc1.1.fc38.1 fedora 86 k libsemanage x86_64 3.5-0.rc1.1.fc38 fedora 119 k libsepol x86_64 3.5-0.rc1.1.fc38 fedora 322 k libsigsegv x86_64 2.14-3.fc37 fedora 27 k libsmartcols x86_64 2.38.1-3.fc38 fedora 64 k libsolv x86_64 0.7.22-4.fc38 copr_base 412 k libssh x86_64 0.10.4-2.fc38 fedora 209 k libssh-config noarch 0.10.4-2.fc38 fedora 8.8 k libstdc++ x86_64 13.0.1-0.1.fc38 fedora 844 k libtasn1 x86_64 4.19.0-1.fc38 fedora 75 k libtirpc x86_64 1.3.3-0.fc37 fedora 93 k libunistring x86_64 1.0-2.fc37 fedora 549 k libuuid x86_64 2.38.1-3.fc38 fedora 27 k libverto x86_64 0.3.2-4.fc37 fedora 21 k libxcrypt x86_64 4.4.33-5.fc38 fedora 120 k libxml2 x86_64 2.10.3-3.fc38 copr_base 701 k libyaml x86_64 0.2.5-8.fc37 fedora 60 k libzstd x86_64 1.5.2-3.fc37 fedora 294 k lua-libs x86_64 5.4.4-7.fc38 fedora 131 k lz4-libs x86_64 1.9.4-1.fc38 fedora 67 k mpdecimal x86_64 2.5.1-4.fc37 fedora 102 k mpfr x86_64 4.1.1-2.fc38 fedora 598 k ncurses-base noarch 6.4-2.20230114.fc38 fedora 87 k ncurses-libs x86_64 6.4-2.20230114.fc38 fedora 333 k nettle x86_64 3.8-2.fc37 fedora 414 k npth x86_64 1.6-10.fc38 fedora 24 k openldap x86_64 2.6.3-1.fc38 fedora 254 k openssl-libs x86_64 1:3.0.7-3.fc38 fedora 2.1 M p11-kit x86_64 0.24.1-5.fc38 fedora 376 k p11-kit-trust x86_64 0.24.1-5.fc38 fedora 137 k pcre2 x86_64 10.42-1.fc38 fedora 234 k pcre2-syntax noarch 10.42-1.fc38 fedora 144 k popt x86_64 1.19-1.fc38 fedora 66 k publicsuffix-list-dafsa noarch 20221208-1.fc38 fedora 59 k python-pip-wheel noarch 22.3.1-2.fc38 copr_base 1.4 M python-setuptools-wheel noarch 65.5.1-1.fc38 fedora 715 k python3 x86_64 3.11.1-3.fc38 copr_base 28 k python3-dateutil noarch 1:2.8.2-5.fc38 copr_base 350 k python3-dbus x86_64 1.3.2-2.fc38 copr_base 147 k python3-distro noarch 1.8.0-2.fc38 copr_base 46 k python3-dnf noarch 4.14.0-2.fc38 copr_base 564 k python3-dnf-plugins-core noarch 4.3.1-2.fc38 copr_base 263 k python3-gpg x86_64 1.17.1-3.fc38 fedora 296 k python3-hawkey x86_64 0.68.0-2.fc38 copr_base 108 k python3-libcomps x86_64 0.1.18-5.fc38 copr_base 48 k python3-libdnf x86_64 0.68.0-2.fc38 copr_base 817 k python3-libs x86_64 3.11.1-3.fc38 copr_base 9.2 M python3-rpm x86_64 4.18.0-10.fc38 copr_base 73 k python3-six noarch 1.16.0-9.fc38 copr_base 43 k readline x86_64 8.2-2.fc38 fedora 211 k rpm x86_64 4.18.0-10.fc38 copr_base 541 k rpm-build-libs x86_64 4.18.0-10.fc38 copr_base 95 k rpm-libs x86_64 4.18.0-10.fc38 copr_base 312 k rpm-sequoia x86_64 1.2.0-1.fc38 fedora 829 k rpm-sign-libs x86_64 4.18.0-10.fc38 copr_base 27 k sed x86_64 4.8-11.fc37 fedora 306 k setup noarch 2.14.3-1.fc38 fedora 152 k shadow-utils x86_64 2:4.13-3.fc38 fedora 1.3 M sqlite-libs x86_64 3.40.1-1.fc38 fedora 661 k systemd-libs x86_64 252.4-598.fc38 fedora 632 k tpm2-tss x86_64 4.0.0-1.fc38 fedora 711 k tzdata noarch 2022g-1.fc38 fedora 716 k xz-libs x86_64 5.2.9-1.fc38 fedora 93 k zchunk-libs x86_64 1.2.3-1.fc38 fedora 51 k zlib x86_64 1.2.13-2.fc38 fedora 94 k Transaction Summary ================================================================================ Install 137 Packages Total download size: 56 M Installed size: 200 M Downloading Packages: (1/137): crypto-policies-20221215-2.gita4c31a3. 528 kB/s | 64 kB 00:00 (2/137): audit-libs-3.0.9-3.fc38.x86_64.rpm 768 kB/s | 117 kB 00:00 (3/137): curl-7.87.0-3.fc38.x86_64.rpm 2.1 MB/s | 347 kB 00:00 (4/137): dnf-4.14.0-2.fc38.noarch.rpm 6.8 MB/s | 467 kB 00:00 (5/137): dnf-data-4.14.0-2.fc38.noarch.rpm 1.1 MB/s | 41 kB 00:00 (6/137): dnf-plugins-core-4.3.1-2.fc38.noarch.r 1.2 MB/s | 34 kB 00:00 (7/137): file-libs-5.42-5.fc38.x86_64.rpm 19 MB/s | 676 kB 00:00 (8/137): glib2-2.74.1-3.fc38.x86_64.rpm 26 MB/s | 2.7 MB 00:00 (9/137): glibc-2.36.9000-23.fc38.x86_64.rpm 19 MB/s | 2.1 MB 00:00 (10/137): glibc-common-2.36.9000-23.fc38.x86_64 4.0 MB/s | 307 kB 00:00 (11/137): glibc-minimal-langpack-2.36.9000-23.f 3.7 MB/s | 34 kB 00:00 (12/137): gnutls-3.7.8-11.fc38.x86_64.rpm 51 MB/s | 1.1 MB 00:00 (13/137): krb5-libs-1.20.1-7.fc38.x86_64.rpm 19 MB/s | 722 kB 00:00 (14/137): libbrotli-1.0.9-11.fc38.x86_64.rpm 9.0 MB/s | 317 kB 00:00 (15/137): libcap-ng-0.8.3-5.fc38.x86_64.rpm 1.8 MB/s | 33 kB 00:00 (16/137): libcomps-0.1.18-5.fc38.x86_64.rpm 7.0 MB/s | 77 kB 00:00 (17/137): libcurl-7.87.0-3.fc38.x86_64.rpm 23 MB/s | 304 kB 00:00 (18/137): libdnf-0.68.0-2.fc38.x86_64.rpm 33 MB/s | 653 kB 00:00 (19/137): libevent-2.1.12-8.fc38.x86_64.rpm 15 MB/s | 258 kB 00:00 (20/137): libmodulemd-2.14.0-5.fc38.x86_64.rpm 16 MB/s | 234 kB 00:00 (21/137): libnghttp2-1.51.0-2.fc38.x86_64.rpm 6.5 MB/s | 76 kB 00:00 (22/137): libpsl-0.21.2-2.fc38.x86_64.rpm 6.6 MB/s | 66 kB 00:00 (23/137): librepo-1.15.1-2.fc38.x86_64.rpm 8.6 MB/s | 97 kB 00:00 (24/137): libreport-filesystem-2.17.6-2.fc38.no 1.5 MB/s | 14 kB 00:00 (25/137): libsolv-0.7.22-4.fc38.x86_64.rpm 23 MB/s | 412 kB 00:00 (26/137): libxml2-2.10.3-3.fc38.x86_64.rpm 31 MB/s | 701 kB 00:00 (27/137): python-pip-wheel-22.3.1-2.fc38.noarch 29 MB/s | 1.4 MB 00:00 (28/137): python3-3.11.1-3.fc38.x86_64.rpm 734 kB/s | 28 kB 00:00 (29/137): python3-dateutil-2.8.2-5.fc38.noarch. 9.3 MB/s | 350 kB 00:00 (30/137): python3-dbus-1.3.2-2.fc38.x86_64.rpm 8.6 MB/s | 147 kB 00:00 (31/137): python3-distro-1.8.0-2.fc38.noarch.rp 2.5 MB/s | 46 kB 00:00 (32/137): python3-dnf-4.14.0-2.fc38.noarch.rpm 28 MB/s | 564 kB 00:00 (33/137): python3-dnf-plugins-core-4.3.1-2.fc38 16 MB/s | 263 kB 00:00 (34/137): python3-hawkey-0.68.0-2.fc38.x86_64.r 6.8 MB/s | 108 kB 00:00 (35/137): python3-libcomps-0.1.18-5.fc38.x86_64 1.8 MB/s | 48 kB 00:00 (36/137): python3-libdnf-0.68.0-2.fc38.x86_64.r 22 MB/s | 817 kB 00:00 (37/137): python3-rpm-4.18.0-10.fc38.x86_64.rpm 761 kB/s | 73 kB 00:00 (38/137): python3-six-1.16.0-9.fc38.noarch.rpm 371 kB/s | 43 kB 00:00 (39/137): python3-libs-3.11.1-3.fc38.x86_64.rpm 40 MB/s | 9.2 MB 00:00 (40/137): rpm-4.18.0-10.fc38.x86_64.rpm 4.6 MB/s | 541 kB 00:00 (41/137): rpm-build-libs-4.18.0-10.fc38.x86_64. 1.1 MB/s | 95 kB 00:00 (42/137): rpm-libs-4.18.0-10.fc38.x86_64.rpm 23 MB/s | 312 kB 00:00 (43/137): rpm-sign-libs-4.18.0-10.fc38.x86_64.r 1.8 MB/s | 27 kB 00:00 (44/137): basesystem-11-14.fc37.noarch.rpm 63 kB/s | 7.0 kB 00:00 (45/137): alternatives-1.21-1.fc38.x86_64.rpm 243 kB/s | 38 kB 00:00 (46/137): bzip2-libs-1.0.8-12.fc37.x86_64.rpm 724 kB/s | 41 kB 00:00 (47/137): ca-certificates-2022.2.54-5.fc37.noar 5.2 MB/s | 829 kB 00:00 (48/137): bash-5.2.15-1.fc38.x86_64.rpm 5.6 MB/s | 1.8 MB 00:00 (49/137): coreutils-9.1-10.fc38.x86_64.rpm 7.0 MB/s | 1.1 MB 00:00 (50/137): dbus-libs-1.14.4-1.fc38.x86_64.rpm 4.5 MB/s | 156 kB 00:00 (51/137): cyrus-sasl-lib-2.1.28-8.fc38.x86_64.r 17 MB/s | 792 kB 00:00 (52/137): elfutils-default-yama-scope-0.188-3.f 426 kB/s | 15 kB 00:00 (53/137): elfutils-libelf-0.188-3.fc38.x86_64.r 5.1 MB/s | 196 kB 00:00 (54/137): coreutils-common-9.1-10.fc38.x86_64.r 17 MB/s | 2.0 MB 00:00 (55/137): elfutils-libs-0.188-3.fc38.x86_64.rpm 8.3 MB/s | 257 kB 00:00 (56/137): expat-2.5.0-1.fc38.x86_64.rpm 4.0 MB/s | 110 kB 00:00 (57/137): fedora-gpg-keys-38-0.3.noarch.rpm 4.4 MB/s | 125 kB 00:00 (58/137): fedora-release-38-0.15.noarch.rpm 453 kB/s | 11 kB 00:00 (59/137): fedora-release-common-38-0.15.noarch. 834 kB/s | 21 kB 00:00 (60/137): fedora-release-identity-basic-38-0.15 474 kB/s | 12 kB 00:00 (61/137): fedora-repos-38-0.3.noarch.rpm 394 kB/s | 10 kB 00:00 (62/137): fedora-repos-rawhide-38-0.3.noarch.rp 373 kB/s | 9.7 kB 00:00 (63/137): findutils-4.9.0-2.fc37.x86_64.rpm 8.8 MB/s | 492 kB 00:00 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zlib-1.2.13-2.fc38.x86_64.rpm 3.0 MB/s | 94 kB 00:00 -------------------------------------------------------------------------------- Total 25 MB/s | 56 MB 00:02 fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0xEB10B464: Userid : "Fedora (38) " Fingerprint: 6A51 BBAB BA3D 5467 B617 1221 809A 8D7C EB10 B464 From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary Key imported successfully fedora 1.6 MB/s | 1.6 kB 00:00 GPG key at file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary (0xEB10B464) is already installed fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0x5323552A: Userid : "Fedora (37) " Fingerprint: ACB5 EE4E 831C 74BB 7C16 8D27 F55A D3FB 5323 552A From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-37-primary Key imported successfully Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.18-2.fc37.x86_64 1/1 Preparing : 1/1 Installing : libgcc-13.0.1-0.1.fc38.x86_64 1/137 Running scriptlet: libgcc-13.0.1-0.1.fc38.x86_64 1/137 Installing : tzdata-2022g-1.fc38.noarch 2/137 Installing : crypto-policies-20221215-2.gita4c31a3.fc38.noarc 3/137 Running scriptlet: crypto-policies-20221215-2.gita4c31a3.fc38.noarc 3/137 Installing : fedora-release-identity-basic-38-0.15.noarch 4/137 Installing : python-setuptools-wheel-65.5.1-1.fc38.noarch 5/137 Installing : publicsuffix-list-dafsa-20221208-1.fc38.noarch 6/137 Installing : pcre2-syntax-10.42-1.fc38.noarch 7/137 Installing : ncurses-base-6.4-2.20230114.fc38.noarch 8/137 Installing : libssh-config-0.10.4-2.fc38.noarch 9/137 Installing : fedora-gpg-keys-38-0.3.noarch 10/137 Installing : fedora-release-38-0.15.noarch 11/137 Installing : fedora-release-common-38-0.15.noarch 12/137 Installing : fedora-repos-rawhide-38-0.3.noarch 13/137 Installing : fedora-repos-38-0.3.noarch 14/137 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Installing : python3-libdnf-0.68.0-2.fc38.x86_64 122/137 Installing : python3-hawkey-0.68.0-2.fc38.x86_64 123/137 Installing : python3-gpg-1.17.1-3.fc38.x86_64 124/137 Installing : curl-7.87.0-3.fc38.x86_64 125/137 Running scriptlet: tpm2-tss-4.0.0-1.fc38.x86_64 126/137 useradd: Warning: missing or non-executable shell '/usr/sbin/nologin' Installing : tpm2-tss-4.0.0-1.fc38.x86_64 126/137 Installing : ima-evm-utils-1.4-6.fc37.x86_64 127/137 Installing : rpm-sign-libs-4.18.0-10.fc38.x86_64 128/137 Installing : python3-rpm-4.18.0-10.fc38.x86_64 129/137 Installing : libarchive-3.6.1-3.fc38.x86_64 130/137 Installing : libreport-filesystem-2.17.6-2.fc38.noarch 131/137 Installing : dnf-data-4.14.0-2.fc38.noarch 132/137 warning: /etc/dnf/dnf.conf created as /etc/dnf/dnf.conf.rpmnew Installing : python3-dnf-4.14.0-2.fc38.noarch 133/137 Installing : python3-dnf-plugins-core-4.3.1-2.fc38.noarch 134/137 Installing : dnf-plugins-core-4.3.1-2.fc38.noarch 135/137 Installing : dnf-4.14.0-2.fc38.noarch 136/137 Running scriptlet: dnf-4.14.0-2.fc38.noarch 136/137 Running scriptlet: rpm-4.18.0-10.fc38.x86_64 137/137 Installing : rpm-4.18.0-10.fc38.x86_64 137/137 Running scriptlet: filesystem-3.18-2.fc37.x86_64 137/137 Running scriptlet: ca-certificates-2022.2.54-5.fc37.noarch 137/137 Running scriptlet: rpm-4.18.0-10.fc38.x86_64 137/137 Verifying : audit-libs-3.0.9-3.fc38.x86_64 1/137 Verifying : crypto-policies-20221215-2.gita4c31a3.fc38.noarc 2/137 Verifying : curl-7.87.0-3.fc38.x86_64 3/137 Verifying : dnf-4.14.0-2.fc38.noarch 4/137 Verifying : dnf-data-4.14.0-2.fc38.noarch 5/137 Verifying : dnf-plugins-core-4.3.1-2.fc38.noarch 6/137 Verifying : file-libs-5.42-5.fc38.x86_64 7/137 Verifying : glib2-2.74.1-3.fc38.x86_64 8/137 Verifying : glibc-2.36.9000-23.fc38.x86_64 9/137 Verifying : glibc-common-2.36.9000-23.fc38.x86_64 10/137 Verifying : glibc-minimal-langpack-2.36.9000-23.fc38.x86_64 11/137 Verifying : gnutls-3.7.8-11.fc38.x86_64 12/137 Verifying : krb5-libs-1.20.1-7.fc38.x86_64 13/137 Verifying : libbrotli-1.0.9-11.fc38.x86_64 14/137 Verifying : libcap-ng-0.8.3-5.fc38.x86_64 15/137 Verifying : libcomps-0.1.18-5.fc38.x86_64 16/137 Verifying : libcurl-7.87.0-3.fc38.x86_64 17/137 Verifying : libdnf-0.68.0-2.fc38.x86_64 18/137 Verifying : libevent-2.1.12-8.fc38.x86_64 19/137 Verifying : libmodulemd-2.14.0-5.fc38.x86_64 20/137 Verifying : libnghttp2-1.51.0-2.fc38.x86_64 21/137 Verifying : libpsl-0.21.2-2.fc38.x86_64 22/137 Verifying : librepo-1.15.1-2.fc38.x86_64 23/137 Verifying : libreport-filesystem-2.17.6-2.fc38.noarch 24/137 Verifying : libsolv-0.7.22-4.fc38.x86_64 25/137 Verifying : libxml2-2.10.3-3.fc38.x86_64 26/137 Verifying : python-pip-wheel-22.3.1-2.fc38.noarch 27/137 Verifying : python3-3.11.1-3.fc38.x86_64 28/137 Verifying : python3-dateutil-1:2.8.2-5.fc38.noarch 29/137 Verifying : python3-dbus-1.3.2-2.fc38.x86_64 30/137 Verifying : python3-distro-1.8.0-2.fc38.noarch 31/137 Verifying : python3-dnf-4.14.0-2.fc38.noarch 32/137 Verifying : python3-dnf-plugins-core-4.3.1-2.fc38.noarch 33/137 Verifying : python3-hawkey-0.68.0-2.fc38.x86_64 34/137 Verifying : python3-libcomps-0.1.18-5.fc38.x86_64 35/137 Verifying : python3-libdnf-0.68.0-2.fc38.x86_64 36/137 Verifying : python3-libs-3.11.1-3.fc38.x86_64 37/137 Verifying : python3-rpm-4.18.0-10.fc38.x86_64 38/137 Verifying : python3-six-1.16.0-9.fc38.noarch 39/137 Verifying : rpm-4.18.0-10.fc38.x86_64 40/137 Verifying : rpm-build-libs-4.18.0-10.fc38.x86_64 41/137 Verifying : rpm-libs-4.18.0-10.fc38.x86_64 42/137 Verifying : rpm-sign-libs-4.18.0-10.fc38.x86_64 43/137 Verifying : alternatives-1.21-1.fc38.x86_64 44/137 Verifying : basesystem-11-14.fc37.noarch 45/137 Verifying : bash-5.2.15-1.fc38.x86_64 46/137 Verifying : bzip2-libs-1.0.8-12.fc37.x86_64 47/137 Verifying : ca-certificates-2022.2.54-5.fc37.noarch 48/137 Verifying : coreutils-9.1-10.fc38.x86_64 49/137 Verifying : coreutils-common-9.1-10.fc38.x86_64 50/137 Verifying : cyrus-sasl-lib-2.1.28-8.fc38.x86_64 51/137 Verifying : dbus-libs-1:1.14.4-1.fc38.x86_64 52/137 Verifying : elfutils-default-yama-scope-0.188-3.fc38.noarch 53/137 Verifying : elfutils-libelf-0.188-3.fc38.x86_64 54/137 Verifying : elfutils-libs-0.188-3.fc38.x86_64 55/137 Verifying : expat-2.5.0-1.fc38.x86_64 56/137 Verifying : fedora-gpg-keys-38-0.3.noarch 57/137 Verifying : fedora-release-38-0.15.noarch 58/137 Verifying : fedora-release-common-38-0.15.noarch 59/137 Verifying : fedora-release-identity-basic-38-0.15.noarch 60/137 Verifying : fedora-repos-38-0.3.noarch 61/137 Verifying : fedora-repos-rawhide-38-0.3.noarch 62/137 Verifying : filesystem-3.18-2.fc37.x86_64 63/137 Verifying : findutils-1:4.9.0-2.fc37.x86_64 64/137 Verifying : gawk-5.1.1-4.fc37.x86_64 65/137 Verifying : gdbm-libs-1:1.23-2.fc37.x86_64 66/137 Verifying : gmp-1:6.2.1-3.fc37.x86_64 67/137 Verifying : gnupg2-2.4.0-1.fc38.x86_64 68/137 Verifying : gpgme-1.17.1-3.fc38.x86_64 69/137 Verifying : grep-3.8-2.fc38.x86_64 70/137 Verifying : ima-evm-utils-1.4-6.fc37.x86_64 71/137 Verifying : json-c-0.16-3.fc38.x86_64 72/137 Verifying : keyutils-libs-1.6.1-5.fc37.x86_64 73/137 Verifying : libacl-2.3.1-4.fc37.x86_64 74/137 Verifying : libarchive-3.6.1-3.fc38.x86_64 75/137 Verifying : libassuan-2.5.5-5.fc37.x86_64 76/137 Verifying : libattr-2.5.1-5.fc37.x86_64 77/137 Verifying : libb2-0.98.1-7.fc37.x86_64 78/137 Verifying : libblkid-2.38.1-3.fc38.x86_64 79/137 Verifying : libcap-2.48-5.fc37.x86_64 80/137 Verifying : libcom_err-1.46.5-3.fc37.x86_64 81/137 Verifying : libffi-3.4.4-1.fc38.x86_64 82/137 Verifying : libfsverity-1.4-8.fc37.x86_64 83/137 Verifying : libgcc-13.0.1-0.1.fc38.x86_64 84/137 Verifying : libgcrypt-1.10.1-6.fc38.x86_64 85/137 Verifying : libgomp-13.0.1-0.1.fc38.x86_64 86/137 Verifying : libgpg-error-1.46-1.fc38.x86_64 87/137 Verifying : libidn2-2.3.4-1.fc38.x86_64 88/137 Verifying : libksba-1.6.3-1.fc38.x86_64 89/137 Verifying : libmount-2.38.1-3.fc38.x86_64 90/137 Verifying : libnsl2-2.0.0-4.fc37.x86_64 91/137 Verifying : libselinux-3.5-0.rc1.1.fc38.1.x86_64 92/137 Verifying : libsemanage-3.5-0.rc1.1.fc38.x86_64 93/137 Verifying : libsepol-3.5-0.rc1.1.fc38.x86_64 94/137 Verifying : libsigsegv-2.14-3.fc37.x86_64 95/137 Verifying : libsmartcols-2.38.1-3.fc38.x86_64 96/137 Verifying : libssh-0.10.4-2.fc38.x86_64 97/137 Verifying : libssh-config-0.10.4-2.fc38.noarch 98/137 Verifying : libstdc++-13.0.1-0.1.fc38.x86_64 99/137 Verifying : libtasn1-4.19.0-1.fc38.x86_64 100/137 Verifying : libtirpc-1.3.3-0.fc37.x86_64 101/137 Verifying : libunistring-1.0-2.fc37.x86_64 102/137 Verifying : libuuid-2.38.1-3.fc38.x86_64 103/137 Verifying : libverto-0.3.2-4.fc37.x86_64 104/137 Verifying : libxcrypt-4.4.33-5.fc38.x86_64 105/137 Verifying : libyaml-0.2.5-8.fc37.x86_64 106/137 Verifying : libzstd-1.5.2-3.fc37.x86_64 107/137 Verifying : lua-libs-5.4.4-7.fc38.x86_64 108/137 Verifying : lz4-libs-1.9.4-1.fc38.x86_64 109/137 Verifying : mpdecimal-2.5.1-4.fc37.x86_64 110/137 Verifying : mpfr-4.1.1-2.fc38.x86_64 111/137 Verifying : ncurses-base-6.4-2.20230114.fc38.noarch 112/137 Verifying : ncurses-libs-6.4-2.20230114.fc38.x86_64 113/137 Verifying : nettle-3.8-2.fc37.x86_64 114/137 Verifying : npth-1.6-10.fc38.x86_64 115/137 Verifying : openldap-2.6.3-1.fc38.x86_64 116/137 Verifying : openssl-libs-1:3.0.7-3.fc38.x86_64 117/137 Verifying : p11-kit-0.24.1-5.fc38.x86_64 118/137 Verifying : p11-kit-trust-0.24.1-5.fc38.x86_64 119/137 Verifying : pcre2-10.42-1.fc38.x86_64 120/137 Verifying : pcre2-syntax-10.42-1.fc38.noarch 121/137 Verifying : popt-1.19-1.fc38.x86_64 122/137 Verifying : publicsuffix-list-dafsa-20221208-1.fc38.noarch 123/137 Verifying : python-setuptools-wheel-65.5.1-1.fc38.noarch 124/137 Verifying : python3-gpg-1.17.1-3.fc38.x86_64 125/137 Verifying : readline-8.2-2.fc38.x86_64 126/137 Verifying : rpm-sequoia-1.2.0-1.fc38.x86_64 127/137 Verifying : sed-4.8-11.fc37.x86_64 128/137 Verifying : setup-2.14.3-1.fc38.noarch 129/137 Verifying : shadow-utils-2:4.13-3.fc38.x86_64 130/137 Verifying : sqlite-libs-3.40.1-1.fc38.x86_64 131/137 Verifying : systemd-libs-252.4-598.fc38.x86_64 132/137 Verifying : tpm2-tss-4.0.0-1.fc38.x86_64 133/137 Verifying : tzdata-2022g-1.fc38.noarch 134/137 Verifying : xz-libs-5.2.9-1.fc38.x86_64 135/137 Verifying : zchunk-libs-1.2.3-1.fc38.x86_64 136/137 Verifying : zlib-1.2.13-2.fc38.x86_64 137/137 Installed products updated. Installed: alternatives-1.21-1.fc38.x86_64 audit-libs-3.0.9-3.fc38.x86_64 basesystem-11-14.fc37.noarch bash-5.2.15-1.fc38.x86_64 bzip2-libs-1.0.8-12.fc37.x86_64 ca-certificates-2022.2.54-5.fc37.noarch coreutils-9.1-10.fc38.x86_64 coreutils-common-9.1-10.fc38.x86_64 crypto-policies-20221215-2.gita4c31a3.fc38.noarch curl-7.87.0-3.fc38.x86_64 cyrus-sasl-lib-2.1.28-8.fc38.x86_64 dbus-libs-1:1.14.4-1.fc38.x86_64 dnf-4.14.0-2.fc38.noarch dnf-data-4.14.0-2.fc38.noarch dnf-plugins-core-4.3.1-2.fc38.noarch elfutils-default-yama-scope-0.188-3.fc38.noarch elfutils-libelf-0.188-3.fc38.x86_64 elfutils-libs-0.188-3.fc38.x86_64 expat-2.5.0-1.fc38.x86_64 fedora-gpg-keys-38-0.3.noarch fedora-release-38-0.15.noarch fedora-release-common-38-0.15.noarch fedora-release-identity-basic-38-0.15.noarch fedora-repos-38-0.3.noarch fedora-repos-rawhide-38-0.3.noarch file-libs-5.42-5.fc38.x86_64 filesystem-3.18-2.fc37.x86_64 findutils-1:4.9.0-2.fc37.x86_64 gawk-5.1.1-4.fc37.x86_64 gdbm-libs-1:1.23-2.fc37.x86_64 glib2-2.74.1-3.fc38.x86_64 glibc-2.36.9000-23.fc38.x86_64 glibc-common-2.36.9000-23.fc38.x86_64 glibc-minimal-langpack-2.36.9000-23.fc38.x86_64 gmp-1:6.2.1-3.fc37.x86_64 gnupg2-2.4.0-1.fc38.x86_64 gnutls-3.7.8-11.fc38.x86_64 gpgme-1.17.1-3.fc38.x86_64 grep-3.8-2.fc38.x86_64 ima-evm-utils-1.4-6.fc37.x86_64 json-c-0.16-3.fc38.x86_64 keyutils-libs-1.6.1-5.fc37.x86_64 krb5-libs-1.20.1-7.fc38.x86_64 libacl-2.3.1-4.fc37.x86_64 libarchive-3.6.1-3.fc38.x86_64 libassuan-2.5.5-5.fc37.x86_64 libattr-2.5.1-5.fc37.x86_64 libb2-0.98.1-7.fc37.x86_64 libblkid-2.38.1-3.fc38.x86_64 libbrotli-1.0.9-11.fc38.x86_64 libcap-2.48-5.fc37.x86_64 libcap-ng-0.8.3-5.fc38.x86_64 libcom_err-1.46.5-3.fc37.x86_64 libcomps-0.1.18-5.fc38.x86_64 libcurl-7.87.0-3.fc38.x86_64 libdnf-0.68.0-2.fc38.x86_64 libevent-2.1.12-8.fc38.x86_64 libffi-3.4.4-1.fc38.x86_64 libfsverity-1.4-8.fc37.x86_64 libgcc-13.0.1-0.1.fc38.x86_64 libgcrypt-1.10.1-6.fc38.x86_64 libgomp-13.0.1-0.1.fc38.x86_64 libgpg-error-1.46-1.fc38.x86_64 libidn2-2.3.4-1.fc38.x86_64 libksba-1.6.3-1.fc38.x86_64 libmodulemd-2.14.0-5.fc38.x86_64 libmount-2.38.1-3.fc38.x86_64 libnghttp2-1.51.0-2.fc38.x86_64 libnsl2-2.0.0-4.fc37.x86_64 libpsl-0.21.2-2.fc38.x86_64 librepo-1.15.1-2.fc38.x86_64 libreport-filesystem-2.17.6-2.fc38.noarch libselinux-3.5-0.rc1.1.fc38.1.x86_64 libsemanage-3.5-0.rc1.1.fc38.x86_64 libsepol-3.5-0.rc1.1.fc38.x86_64 libsigsegv-2.14-3.fc37.x86_64 libsmartcols-2.38.1-3.fc38.x86_64 libsolv-0.7.22-4.fc38.x86_64 libssh-0.10.4-2.fc38.x86_64 libssh-config-0.10.4-2.fc38.noarch libstdc++-13.0.1-0.1.fc38.x86_64 libtasn1-4.19.0-1.fc38.x86_64 libtirpc-1.3.3-0.fc37.x86_64 libunistring-1.0-2.fc37.x86_64 libuuid-2.38.1-3.fc38.x86_64 libverto-0.3.2-4.fc37.x86_64 libxcrypt-4.4.33-5.fc38.x86_64 libxml2-2.10.3-3.fc38.x86_64 libyaml-0.2.5-8.fc37.x86_64 libzstd-1.5.2-3.fc37.x86_64 lua-libs-5.4.4-7.fc38.x86_64 lz4-libs-1.9.4-1.fc38.x86_64 mpdecimal-2.5.1-4.fc37.x86_64 mpfr-4.1.1-2.fc38.x86_64 ncurses-base-6.4-2.20230114.fc38.noarch ncurses-libs-6.4-2.20230114.fc38.x86_64 nettle-3.8-2.fc37.x86_64 npth-1.6-10.fc38.x86_64 openldap-2.6.3-1.fc38.x86_64 openssl-libs-1:3.0.7-3.fc38.x86_64 p11-kit-0.24.1-5.fc38.x86_64 p11-kit-trust-0.24.1-5.fc38.x86_64 pcre2-10.42-1.fc38.x86_64 pcre2-syntax-10.42-1.fc38.noarch popt-1.19-1.fc38.x86_64 publicsuffix-list-dafsa-20221208-1.fc38.noarch python-pip-wheel-22.3.1-2.fc38.noarch python-setuptools-wheel-65.5.1-1.fc38.noarch python3-3.11.1-3.fc38.x86_64 python3-dateutil-1:2.8.2-5.fc38.noarch python3-dbus-1.3.2-2.fc38.x86_64 python3-distro-1.8.0-2.fc38.noarch python3-dnf-4.14.0-2.fc38.noarch python3-dnf-plugins-core-4.3.1-2.fc38.noarch python3-gpg-1.17.1-3.fc38.x86_64 python3-hawkey-0.68.0-2.fc38.x86_64 python3-libcomps-0.1.18-5.fc38.x86_64 python3-libdnf-0.68.0-2.fc38.x86_64 python3-libs-3.11.1-3.fc38.x86_64 python3-rpm-4.18.0-10.fc38.x86_64 python3-six-1.16.0-9.fc38.noarch readline-8.2-2.fc38.x86_64 rpm-4.18.0-10.fc38.x86_64 rpm-build-libs-4.18.0-10.fc38.x86_64 rpm-libs-4.18.0-10.fc38.x86_64 rpm-sequoia-1.2.0-1.fc38.x86_64 rpm-sign-libs-4.18.0-10.fc38.x86_64 sed-4.8-11.fc37.x86_64 setup-2.14.3-1.fc38.noarch shadow-utils-2:4.13-3.fc38.x86_64 sqlite-libs-3.40.1-1.fc38.x86_64 systemd-libs-252.4-598.fc38.x86_64 tpm2-tss-4.0.0-1.fc38.x86_64 tzdata-2022g-1.fc38.noarch xz-libs-5.2.9-1.fc38.x86_64 zchunk-libs-1.2.3-1.fc38.x86_64 zlib-1.2.13-2.fc38.x86_64 Complete! Finish(bootstrap): dnf install Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1674330935.721363/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 3.5 INFO: Mock Version: 3.5 Start: dnf install No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 15 kB/s | 3.7 kB 00:00 Copr repository 21 MB/s | 16 MB 00:00 fedora 280 kB/s | 21 kB 00:00 Dependencies resolved. ================================================================================ Package Arch Version Repo Size ================================================================================ Installing group/module packages: bash x86_64 5.2.15-1.fc38 fedora 1.8 M bzip2 x86_64 1.0.8-12.fc37 fedora 52 k coreutils x86_64 9.1-10.fc38 fedora 1.1 M cpio x86_64 2.13-13.fc38 fedora 276 k diffutils x86_64 3.9-1.fc38 fedora 397 k fedora-release-common noarch 38-0.15 fedora 21 k findutils x86_64 1:4.9.0-2.fc37 fedora 492 k gawk x86_64 5.1.1-4.fc37 fedora 1.0 M glibc-minimal-langpack x86_64 2.36.9000-23.fc38 copr_base 34 k grep x86_64 3.8-2.fc38 fedora 292 k gzip x86_64 1.12-2.fc37 fedora 166 k info x86_64 7.0.1-1.fc38 fedora 181 k patch x86_64 2.7.6-17.fc37 fedora 124 k redhat-rpm-config noarch 245-1.fc38 fedora 82 k rpm-build x86_64 4.18.0-10.fc38 copr_base 70 k sed x86_64 4.8-11.fc37 fedora 306 k shadow-utils x86_64 2:4.13-3.fc38 fedora 1.3 M tar x86_64 2:1.34-5.fc38 fedora 885 k unzip x86_64 6.0-58.fc38 fedora 182 k util-linux x86_64 2.38.1-3.fc38 fedora 2.3 M which x86_64 2.21-36.fc38 fedora 41 k xz x86_64 5.2.9-1.fc38 fedora 306 k Installing dependencies: alternatives x86_64 1.21-1.fc38 fedora 38 k ansible-srpm-macros noarch 1-8.1.fc38 fedora 8.6 k audit-libs x86_64 3.0.9-3.fc38 copr_base 117 k authselect x86_64 1.4.2-1.fc38 fedora 144 k authselect-libs x86_64 1.4.2-1.fc38 fedora 250 k basesystem noarch 11-14.fc37 fedora 7.0 k binutils x86_64 2.39-6.fc38 fedora 5.5 M binutils-gold x86_64 2.39-6.fc38 fedora 777 k bzip2-libs x86_64 1.0.8-12.fc37 fedora 41 k ca-certificates noarch 2022.2.54-5.fc37 fedora 829 k coreutils-common x86_64 9.1-10.fc38 fedora 2.0 M cracklib x86_64 2.9.7-30.fc38 fedora 92 k crypto-policies noarch 20221215-2.gita4c31a3.fc38 copr_base 64 k curl x86_64 7.87.0-3.fc38 copr_base 347 k cyrus-sasl-lib x86_64 2.1.28-8.fc38 fedora 792 k debugedit x86_64 5.0-5.fc37 fedora 77 k dwz x86_64 0.15-1.fc38 fedora 136 k ed x86_64 1.19-1.fc38 fedora 78 k efi-srpm-macros noarch 5-6.fc37 fedora 22 k elfutils x86_64 0.188-3.fc38 fedora 529 k elfutils-debuginfod-client x86_64 0.188-3.fc38 fedora 40 k elfutils-default-yama-scope noarch 0.188-3.fc38 fedora 15 k elfutils-libelf x86_64 0.188-3.fc38 fedora 196 k elfutils-libs x86_64 0.188-3.fc38 fedora 257 k fedora-gpg-keys noarch 38-0.3 fedora 125 k fedora-release noarch 38-0.15 fedora 11 k fedora-release-identity-basic noarch 38-0.15 fedora 12 k fedora-repos noarch 38-0.3 fedora 10 k fedora-repos-rawhide noarch 38-0.3 fedora 9.7 k file x86_64 5.42-5.fc38 copr_base 49 k file-libs x86_64 5.42-5.fc38 copr_base 676 k filesystem x86_64 3.18-2.fc37 fedora 1.1 M fonts-srpm-macros noarch 1:2.0.5-10.fc38 fedora 26 k fpc-srpm-macros noarch 1.3-6.fc37 fedora 7.7 k gdb-minimal x86_64 12.1-10.fc38 fedora 3.7 M gdbm-libs x86_64 1:1.23-2.fc37 fedora 56 k ghc-srpm-macros noarch 1.5.0-7.fc37 fedora 7.8 k glibc x86_64 2.36.9000-23.fc38 copr_base 2.1 M glibc-common x86_64 2.36.9000-23.fc38 copr_base 307 k glibc-gconv-extra x86_64 2.36.9000-23.fc38 copr_base 1.5 M gmp x86_64 1:6.2.1-3.fc37 fedora 315 k gnat-srpm-macros noarch 5-1.fc38 fedora 8.4 k go-srpm-macros noarch 3.2.0-1.fc38 fedora 27 k jansson x86_64 2.13.1-6.fc38 copr_base 45 k kernel-srpm-macros noarch 1.0-15.fc37 fedora 9.4 k keyutils-libs x86_64 1.6.1-5.fc37 fedora 31 k krb5-libs x86_64 1.20.1-7.fc38 copr_base 722 k libacl x86_64 2.3.1-4.fc37 fedora 23 k libarchive x86_64 3.6.1-3.fc38 fedora 397 k libattr x86_64 2.5.1-5.fc37 fedora 18 k libblkid x86_64 2.38.1-3.fc38 fedora 106 k libbrotli x86_64 1.0.9-11.fc38 copr_base 317 k libcap x86_64 2.48-5.fc37 fedora 67 k libcap-ng x86_64 0.8.3-5.fc38 copr_base 33 k libcom_err x86_64 1.46.5-3.fc37 fedora 25 k libcurl x86_64 7.87.0-3.fc38 copr_base 304 k libdb x86_64 5.3.28-54.fc38 fedora 764 k libeconf x86_64 0.4.0-4.fc37 fedora 27 k libevent x86_64 2.1.12-8.fc38 copr_base 258 k libfdisk x86_64 2.38.1-3.fc38 fedora 160 k libffi x86_64 3.4.4-1.fc38 fedora 38 k libgcc x86_64 13.0.1-0.1.fc38 fedora 93 k libgomp x86_64 13.0.1-0.1.fc38 fedora 300 k libidn2 x86_64 2.3.4-1.fc38 fedora 160 k libmount x86_64 2.38.1-3.fc38 fedora 135 k libnghttp2 x86_64 1.51.0-2.fc38 copr_base 76 k libnsl2 x86_64 2.0.0-4.fc37 fedora 30 k libpkgconf x86_64 1.8.0-3.fc37 fedora 36 k libpsl x86_64 0.21.2-2.fc38 copr_base 66 k libpwquality x86_64 1.4.5-2.fc38 copr_base 108 k libselinux x86_64 3.5-0.rc1.1.fc38.1 fedora 86 k libsemanage x86_64 3.5-0.rc1.1.fc38 fedora 119 k libsepol x86_64 3.5-0.rc1.1.fc38 fedora 322 k libsigsegv x86_64 2.14-3.fc37 fedora 27 k libsmartcols x86_64 2.38.1-3.fc38 fedora 64 k libssh x86_64 0.10.4-2.fc38 fedora 209 k libssh-config noarch 0.10.4-2.fc38 fedora 8.8 k libstdc++ x86_64 13.0.1-0.1.fc38 fedora 844 k libtasn1 x86_64 4.19.0-1.fc38 fedora 75 k libtirpc x86_64 1.3.3-0.fc37 fedora 93 k libunistring x86_64 1.0-2.fc37 fedora 549 k libutempter x86_64 1.2.1-7.fc37 fedora 26 k libuuid x86_64 2.38.1-3.fc38 fedora 27 k libverto x86_64 0.3.2-4.fc37 fedora 21 k libxcrypt x86_64 4.4.33-5.fc38 fedora 120 k libxml2 x86_64 2.10.3-3.fc38 copr_base 701 k libzstd x86_64 1.5.2-3.fc37 fedora 294 k lua-libs x86_64 5.4.4-7.fc38 fedora 131 k lua-srpm-macros noarch 1-7.fc37 fedora 8.8 k lz4-libs x86_64 1.9.4-1.fc38 fedora 67 k mpfr x86_64 4.1.1-2.fc38 fedora 598 k ncurses-base noarch 6.4-2.20230114.fc38 fedora 87 k ncurses-libs x86_64 6.4-2.20230114.fc38 fedora 333 k nettle x86_64 3.8-2.fc37 fedora 414 k nim-srpm-macros noarch 3-7.fc37 fedora 8.4 k ocaml-srpm-macros noarch 7-2.fc37 fedora 13 k openblas-srpm-macros noarch 2-12.fc37 fedora 7.5 k openldap x86_64 2.6.3-1.fc38 fedora 254 k openssl-libs x86_64 1:3.0.7-3.fc38 fedora 2.1 M p11-kit x86_64 0.24.1-5.fc38 fedora 376 k p11-kit-trust x86_64 0.24.1-5.fc38 fedora 137 k package-notes-srpm-macros noarch 0.5-6.fc38 fedora 11 k pam x86_64 1.5.2-15.fc38 fedora 559 k pam-libs x86_64 1.5.2-15.fc38 fedora 57 k pcre2 x86_64 10.42-1.fc38 fedora 234 k pcre2-syntax noarch 10.42-1.fc38 fedora 144 k perl-srpm-macros noarch 1-47.fc38 fedora 8.2 k pkgconf x86_64 1.8.0-3.fc37 fedora 41 k pkgconf-m4 noarch 1.8.0-3.fc37 fedora 14 k pkgconf-pkg-config x86_64 1.8.0-3.fc37 fedora 10 k popt x86_64 1.19-1.fc38 fedora 66 k publicsuffix-list-dafsa noarch 20221208-1.fc38 fedora 59 k python-srpm-macros noarch 3.11-7.fc38 fedora 26 k qt5-srpm-macros noarch 5.15.8-1.fc38 fedora 8.0 k readline x86_64 8.2-2.fc38 fedora 211 k rpm x86_64 4.18.0-10.fc38 copr_base 541 k rpm-build-libs x86_64 4.18.0-10.fc38 copr_base 95 k rpm-libs x86_64 4.18.0-10.fc38 copr_base 312 k rpm-sequoia x86_64 1.2.0-1.fc38 fedora 829 k rpmautospec-rpm-macros noarch 0.3.1-2.fc38 copr_base 9.5 k rust-srpm-macros noarch 23-1.fc38 fedora 9.4 k setup noarch 2.14.3-1.fc38 fedora 152 k sqlite-libs x86_64 3.40.1-1.fc38 fedora 661 k systemd-libs x86_64 252.4-598.fc38 fedora 632 k tzdata noarch 2022g-1.fc38 fedora 716 k util-linux-core x86_64 2.38.1-3.fc38 fedora 470 k xxhash-libs x86_64 0.8.1-3.fc37 fedora 41 k xz-libs x86_64 5.2.9-1.fc38 fedora 93 k zip x86_64 3.0-35.fc38 fedora 259 k zlib x86_64 1.2.13-2.fc38 fedora 94 k zstd x86_64 1.5.2-3.fc37 fedora 447 k Installing Groups: Buildsystem building group Transaction Summary ================================================================================ Install 153 Packages Total size: 52 M Installed size: 181 M Downloading Packages: [SKIPPED] audit-libs-3.0.9-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] crypto-policies-20221215-2.gita4c31a3.fc38.noarch.rpm: Already downloaded [SKIPPED] curl-7.87.0-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] file-5.42-5.fc38.x86_64.rpm: Already downloaded [SKIPPED] file-libs-5.42-5.fc38.x86_64.rpm: Already downloaded [SKIPPED] glibc-2.36.9000-23.fc38.x86_64.rpm: Already downloaded [SKIPPED] glibc-common-2.36.9000-23.fc38.x86_64.rpm: Already downloaded [SKIPPED] glibc-gconv-extra-2.36.9000-23.fc38.x86_64.rpm: Already downloaded [SKIPPED] glibc-minimal-langpack-2.36.9000-23.fc38.x86_64.rpm: Already downloaded [SKIPPED] jansson-2.13.1-6.fc38.x86_64.rpm: Already downloaded [SKIPPED] krb5-libs-1.20.1-7.fc38.x86_64.rpm: Already downloaded [SKIPPED] libbrotli-1.0.9-11.fc38.x86_64.rpm: Already downloaded [SKIPPED] libcap-ng-0.8.3-5.fc38.x86_64.rpm: Already downloaded [SKIPPED] libcurl-7.87.0-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] libevent-2.1.12-8.fc38.x86_64.rpm: Already downloaded [SKIPPED] libnghttp2-1.51.0-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] libpsl-0.21.2-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] libpwquality-1.4.5-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] libxml2-2.10.3-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] rpm-4.18.0-10.fc38.x86_64.rpm: Already downloaded [SKIPPED] rpm-build-4.18.0-10.fc38.x86_64.rpm: Already downloaded [SKIPPED] rpm-build-libs-4.18.0-10.fc38.x86_64.rpm: Already downloaded [SKIPPED] rpm-libs-4.18.0-10.fc38.x86_64.rpm: Already downloaded [SKIPPED] rpmautospec-rpm-macros-0.3.1-2.fc38.noarch.rpm: Already downloaded [SKIPPED] alternatives-1.21-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] ansible-srpm-macros-1-8.1.fc38.noarch.rpm: Already downloaded [SKIPPED] authselect-1.4.2-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] authselect-libs-1.4.2-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] basesystem-11-14.fc37.noarch.rpm: Already downloaded [SKIPPED] bash-5.2.15-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] binutils-2.39-6.fc38.x86_64.rpm: Already downloaded [SKIPPED] binutils-gold-2.39-6.fc38.x86_64.rpm: Already downloaded [SKIPPED] bzip2-1.0.8-12.fc37.x86_64.rpm: Already downloaded [SKIPPED] bzip2-libs-1.0.8-12.fc37.x86_64.rpm: Already downloaded [SKIPPED] ca-certificates-2022.2.54-5.fc37.noarch.rpm: Already downloaded [SKIPPED] coreutils-9.1-10.fc38.x86_64.rpm: Already downloaded [SKIPPED] coreutils-common-9.1-10.fc38.x86_64.rpm: Already downloaded [SKIPPED] cpio-2.13-13.fc38.x86_64.rpm: Already downloaded [SKIPPED] cracklib-2.9.7-30.fc38.x86_64.rpm: Already downloaded [SKIPPED] cyrus-sasl-lib-2.1.28-8.fc38.x86_64.rpm: Already downloaded [SKIPPED] debugedit-5.0-5.fc37.x86_64.rpm: Already downloaded [SKIPPED] diffutils-3.9-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] dwz-0.15-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] ed-1.19-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] efi-srpm-macros-5-6.fc37.noarch.rpm: Already downloaded [SKIPPED] elfutils-0.188-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] elfutils-debuginfod-client-0.188-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] elfutils-default-yama-scope-0.188-3.fc38.noarch.rpm: Already downloaded [SKIPPED] elfutils-libelf-0.188-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] elfutils-libs-0.188-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] fedora-gpg-keys-38-0.3.noarch.rpm: Already downloaded [SKIPPED] fedora-release-38-0.15.noarch.rpm: Already downloaded [SKIPPED] fedora-release-common-38-0.15.noarch.rpm: Already downloaded [SKIPPED] fedora-release-identity-basic-38-0.15.noarch.rpm: Already downloaded [SKIPPED] fedora-repos-38-0.3.noarch.rpm: Already downloaded [SKIPPED] fedora-repos-rawhide-38-0.3.noarch.rpm: Already downloaded [SKIPPED] filesystem-3.18-2.fc37.x86_64.rpm: Already downloaded [SKIPPED] findutils-4.9.0-2.fc37.x86_64.rpm: Already downloaded [SKIPPED] fonts-srpm-macros-2.0.5-10.fc38.noarch.rpm: Already downloaded [SKIPPED] fpc-srpm-macros-1.3-6.fc37.noarch.rpm: Already downloaded [SKIPPED] gawk-5.1.1-4.fc37.x86_64.rpm: Already downloaded [SKIPPED] gdb-minimal-12.1-10.fc38.x86_64.rpm: Already downloaded [SKIPPED] gdbm-libs-1.23-2.fc37.x86_64.rpm: Already downloaded [SKIPPED] ghc-srpm-macros-1.5.0-7.fc37.noarch.rpm: Already downloaded [SKIPPED] gmp-6.2.1-3.fc37.x86_64.rpm: Already downloaded [SKIPPED] gnat-srpm-macros-5-1.fc38.noarch.rpm: Already downloaded [SKIPPED] go-srpm-macros-3.2.0-1.fc38.noarch.rpm: Already downloaded [SKIPPED] grep-3.8-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] gzip-1.12-2.fc37.x86_64.rpm: Already downloaded [SKIPPED] info-7.0.1-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] kernel-srpm-macros-1.0-15.fc37.noarch.rpm: Already downloaded [SKIPPED] keyutils-libs-1.6.1-5.fc37.x86_64.rpm: Already downloaded [SKIPPED] libacl-2.3.1-4.fc37.x86_64.rpm: Already downloaded [SKIPPED] libarchive-3.6.1-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] libattr-2.5.1-5.fc37.x86_64.rpm: Already downloaded [SKIPPED] libblkid-2.38.1-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] libcap-2.48-5.fc37.x86_64.rpm: Already downloaded [SKIPPED] libcom_err-1.46.5-3.fc37.x86_64.rpm: Already downloaded [SKIPPED] libdb-5.3.28-54.fc38.x86_64.rpm: Already downloaded [SKIPPED] libeconf-0.4.0-4.fc37.x86_64.rpm: Already downloaded [SKIPPED] libfdisk-2.38.1-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] libffi-3.4.4-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] libgcc-13.0.1-0.1.fc38.x86_64.rpm: Already downloaded [SKIPPED] libgomp-13.0.1-0.1.fc38.x86_64.rpm: Already downloaded [SKIPPED] libidn2-2.3.4-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] libmount-2.38.1-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] libnsl2-2.0.0-4.fc37.x86_64.rpm: Already downloaded [SKIPPED] libpkgconf-1.8.0-3.fc37.x86_64.rpm: Already downloaded [SKIPPED] libselinux-3.5-0.rc1.1.fc38.1.x86_64.rpm: Already downloaded [SKIPPED] libsemanage-3.5-0.rc1.1.fc38.x86_64.rpm: Already downloaded [SKIPPED] libsepol-3.5-0.rc1.1.fc38.x86_64.rpm: Already downloaded [SKIPPED] libsigsegv-2.14-3.fc37.x86_64.rpm: Already downloaded [SKIPPED] libsmartcols-2.38.1-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] libssh-0.10.4-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] libssh-config-0.10.4-2.fc38.noarch.rpm: Already downloaded [SKIPPED] libstdc++-13.0.1-0.1.fc38.x86_64.rpm: Already downloaded [SKIPPED] libtasn1-4.19.0-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] libtirpc-1.3.3-0.fc37.x86_64.rpm: Already downloaded [SKIPPED] libunistring-1.0-2.fc37.x86_64.rpm: Already downloaded [SKIPPED] libutempter-1.2.1-7.fc37.x86_64.rpm: Already downloaded [SKIPPED] libuuid-2.38.1-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] libverto-0.3.2-4.fc37.x86_64.rpm: Already downloaded [SKIPPED] libxcrypt-4.4.33-5.fc38.x86_64.rpm: Already downloaded [SKIPPED] libzstd-1.5.2-3.fc37.x86_64.rpm: Already downloaded [SKIPPED] lua-libs-5.4.4-7.fc38.x86_64.rpm: Already downloaded [SKIPPED] lua-srpm-macros-1-7.fc37.noarch.rpm: Already downloaded [SKIPPED] lz4-libs-1.9.4-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] mpfr-4.1.1-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] ncurses-base-6.4-2.20230114.fc38.noarch.rpm: Already downloaded [SKIPPED] ncurses-libs-6.4-2.20230114.fc38.x86_64.rpm: Already downloaded [SKIPPED] nettle-3.8-2.fc37.x86_64.rpm: Already downloaded [SKIPPED] nim-srpm-macros-3-7.fc37.noarch.rpm: Already downloaded [SKIPPED] ocaml-srpm-macros-7-2.fc37.noarch.rpm: Already downloaded [SKIPPED] openblas-srpm-macros-2-12.fc37.noarch.rpm: Already downloaded [SKIPPED] openldap-2.6.3-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] openssl-libs-3.0.7-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] p11-kit-0.24.1-5.fc38.x86_64.rpm: Already downloaded [SKIPPED] p11-kit-trust-0.24.1-5.fc38.x86_64.rpm: Already downloaded [SKIPPED] package-notes-srpm-macros-0.5-6.fc38.noarch.rpm: Already downloaded [SKIPPED] pam-1.5.2-15.fc38.x86_64.rpm: Already downloaded [SKIPPED] pam-libs-1.5.2-15.fc38.x86_64.rpm: Already downloaded [SKIPPED] patch-2.7.6-17.fc37.x86_64.rpm: Already downloaded [SKIPPED] pcre2-10.42-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] pcre2-syntax-10.42-1.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-srpm-macros-1-47.fc38.noarch.rpm: Already downloaded [SKIPPED] pkgconf-1.8.0-3.fc37.x86_64.rpm: Already downloaded [SKIPPED] pkgconf-m4-1.8.0-3.fc37.noarch.rpm: Already downloaded [SKIPPED] pkgconf-pkg-config-1.8.0-3.fc37.x86_64.rpm: Already downloaded [SKIPPED] popt-1.19-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] publicsuffix-list-dafsa-20221208-1.fc38.noarch.rpm: Already downloaded [SKIPPED] python-srpm-macros-3.11-7.fc38.noarch.rpm: Already downloaded [SKIPPED] qt5-srpm-macros-5.15.8-1.fc38.noarch.rpm: Already downloaded [SKIPPED] readline-8.2-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] redhat-rpm-config-245-1.fc38.noarch.rpm: Already downloaded [SKIPPED] rpm-sequoia-1.2.0-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] rust-srpm-macros-23-1.fc38.noarch.rpm: Already downloaded [SKIPPED] sed-4.8-11.fc37.x86_64.rpm: Already downloaded [SKIPPED] setup-2.14.3-1.fc38.noarch.rpm: Already downloaded [SKIPPED] shadow-utils-4.13-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] sqlite-libs-3.40.1-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] systemd-libs-252.4-598.fc38.x86_64.rpm: Already downloaded [SKIPPED] tar-1.34-5.fc38.x86_64.rpm: Already downloaded [SKIPPED] tzdata-2022g-1.fc38.noarch.rpm: Already downloaded [SKIPPED] unzip-6.0-58.fc38.x86_64.rpm: Already downloaded [SKIPPED] util-linux-2.38.1-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] util-linux-core-2.38.1-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] which-2.21-36.fc38.x86_64.rpm: Already downloaded [SKIPPED] xxhash-libs-0.8.1-3.fc37.x86_64.rpm: Already downloaded [SKIPPED] xz-5.2.9-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] xz-libs-5.2.9-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] zip-3.0-35.fc38.x86_64.rpm: Already downloaded [SKIPPED] zlib-1.2.13-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] zstd-1.5.2-3.fc37.x86_64.rpm: Already downloaded fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0xEB10B464: Userid : "Fedora (38) " Fingerprint: 6A51 BBAB BA3D 5467 B617 1221 809A 8D7C EB10 B464 From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary Key imported successfully fedora 1.6 MB/s | 1.6 kB 00:00 GPG key at file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary (0xEB10B464) is already installed fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0x5323552A: Userid : "Fedora (37) " Fingerprint: ACB5 EE4E 831C 74BB 7C16 8D27 F55A D3FB 5323 552A From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-37-primary Key imported successfully Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.18-2.fc37.x86_64 1/1 Preparing : 1/1 Installing : libgcc-13.0.1-0.1.fc38.x86_64 1/153 Running scriptlet: libgcc-13.0.1-0.1.fc38.x86_64 1/153 Installing : crypto-policies-20221215-2.gita4c31a3.fc38.noarc 2/153 Running scriptlet: crypto-policies-20221215-2.gita4c31a3.fc38.noarc 2/153 Installing : tzdata-2022g-1.fc38.noarch 3/153 Installing : fedora-release-identity-basic-38-0.15.noarch 4/153 Installing : rust-srpm-macros-23-1.fc38.noarch 5/153 Installing : qt5-srpm-macros-5.15.8-1.fc38.noarch 6/153 Installing : publicsuffix-list-dafsa-20221208-1.fc38.noarch 7/153 Installing : pkgconf-m4-1.8.0-3.fc37.noarch 8/153 Installing : perl-srpm-macros-1-47.fc38.noarch 9/153 Installing : pcre2-syntax-10.42-1.fc38.noarch 10/153 Installing : package-notes-srpm-macros-0.5-6.fc38.noarch 11/153 Installing : openblas-srpm-macros-2-12.fc37.noarch 12/153 Installing : ocaml-srpm-macros-7-2.fc37.noarch 13/153 Installing : nim-srpm-macros-3-7.fc37.noarch 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: libsepol-3.5-0.rc1.1.fc38.x86_64 91/153 Verifying : libsigsegv-2.14-3.fc37.x86_64 92/153 Verifying : libsmartcols-2.38.1-3.fc38.x86_64 93/153 Verifying : libssh-0.10.4-2.fc38.x86_64 94/153 Verifying : libssh-config-0.10.4-2.fc38.noarch 95/153 Verifying : libstdc++-13.0.1-0.1.fc38.x86_64 96/153 Verifying : libtasn1-4.19.0-1.fc38.x86_64 97/153 Verifying : libtirpc-1.3.3-0.fc37.x86_64 98/153 Verifying : libunistring-1.0-2.fc37.x86_64 99/153 Verifying : libutempter-1.2.1-7.fc37.x86_64 100/153 Verifying : libuuid-2.38.1-3.fc38.x86_64 101/153 Verifying : libverto-0.3.2-4.fc37.x86_64 102/153 Verifying : libxcrypt-4.4.33-5.fc38.x86_64 103/153 Verifying : libzstd-1.5.2-3.fc37.x86_64 104/153 Verifying : lua-libs-5.4.4-7.fc38.x86_64 105/153 Verifying : lua-srpm-macros-1-7.fc37.noarch 106/153 Verifying : lz4-libs-1.9.4-1.fc38.x86_64 107/153 Verifying : mpfr-4.1.1-2.fc38.x86_64 108/153 Verifying : ncurses-base-6.4-2.20230114.fc38.noarch 109/153 Verifying : ncurses-libs-6.4-2.20230114.fc38.x86_64 110/153 Verifying : nettle-3.8-2.fc37.x86_64 111/153 Verifying : nim-srpm-macros-3-7.fc37.noarch 112/153 Verifying : ocaml-srpm-macros-7-2.fc37.noarch 113/153 Verifying : openblas-srpm-macros-2-12.fc37.noarch 114/153 Verifying : openldap-2.6.3-1.fc38.x86_64 115/153 Verifying : openssl-libs-1:3.0.7-3.fc38.x86_64 116/153 Verifying : p11-kit-0.24.1-5.fc38.x86_64 117/153 Verifying : p11-kit-trust-0.24.1-5.fc38.x86_64 118/153 Verifying : package-notes-srpm-macros-0.5-6.fc38.noarch 119/153 Verifying : pam-1.5.2-15.fc38.x86_64 120/153 Verifying : pam-libs-1.5.2-15.fc38.x86_64 121/153 Verifying : patch-2.7.6-17.fc37.x86_64 122/153 Verifying : pcre2-10.42-1.fc38.x86_64 123/153 Verifying : pcre2-syntax-10.42-1.fc38.noarch 124/153 Verifying : perl-srpm-macros-1-47.fc38.noarch 125/153 Verifying : pkgconf-1.8.0-3.fc37.x86_64 126/153 Verifying : pkgconf-m4-1.8.0-3.fc37.noarch 127/153 Verifying : pkgconf-pkg-config-1.8.0-3.fc37.x86_64 128/153 Verifying : popt-1.19-1.fc38.x86_64 129/153 Verifying : publicsuffix-list-dafsa-20221208-1.fc38.noarch 130/153 Verifying : python-srpm-macros-3.11-7.fc38.noarch 131/153 Verifying : qt5-srpm-macros-5.15.8-1.fc38.noarch 132/153 Verifying : readline-8.2-2.fc38.x86_64 133/153 Verifying : redhat-rpm-config-245-1.fc38.noarch 134/153 Verifying : rpm-sequoia-1.2.0-1.fc38.x86_64 135/153 Verifying : rust-srpm-macros-23-1.fc38.noarch 136/153 Verifying : sed-4.8-11.fc37.x86_64 137/153 Verifying : setup-2.14.3-1.fc38.noarch 138/153 Verifying : shadow-utils-2:4.13-3.fc38.x86_64 139/153 Verifying : sqlite-libs-3.40.1-1.fc38.x86_64 140/153 Verifying : systemd-libs-252.4-598.fc38.x86_64 141/153 Verifying : tar-2:1.34-5.fc38.x86_64 142/153 Verifying : tzdata-2022g-1.fc38.noarch 143/153 Verifying : unzip-6.0-58.fc38.x86_64 144/153 Verifying : util-linux-2.38.1-3.fc38.x86_64 145/153 Verifying : util-linux-core-2.38.1-3.fc38.x86_64 146/153 Verifying : which-2.21-36.fc38.x86_64 147/153 Verifying : xxhash-libs-0.8.1-3.fc37.x86_64 148/153 Verifying : xz-5.2.9-1.fc38.x86_64 149/153 Verifying : xz-libs-5.2.9-1.fc38.x86_64 150/153 Verifying : zip-3.0-35.fc38.x86_64 151/153 Verifying : zlib-1.2.13-2.fc38.x86_64 152/153 Verifying : zstd-1.5.2-3.fc37.x86_64 153/153 Installed: alternatives-1.21-1.fc38.x86_64 ansible-srpm-macros-1-8.1.fc38.noarch audit-libs-3.0.9-3.fc38.x86_64 authselect-1.4.2-1.fc38.x86_64 authselect-libs-1.4.2-1.fc38.x86_64 basesystem-11-14.fc37.noarch bash-5.2.15-1.fc38.x86_64 binutils-2.39-6.fc38.x86_64 binutils-gold-2.39-6.fc38.x86_64 bzip2-1.0.8-12.fc37.x86_64 bzip2-libs-1.0.8-12.fc37.x86_64 ca-certificates-2022.2.54-5.fc37.noarch coreutils-9.1-10.fc38.x86_64 coreutils-common-9.1-10.fc38.x86_64 cpio-2.13-13.fc38.x86_64 cracklib-2.9.7-30.fc38.x86_64 crypto-policies-20221215-2.gita4c31a3.fc38.noarch curl-7.87.0-3.fc38.x86_64 cyrus-sasl-lib-2.1.28-8.fc38.x86_64 debugedit-5.0-5.fc37.x86_64 diffutils-3.9-1.fc38.x86_64 dwz-0.15-1.fc38.x86_64 ed-1.19-1.fc38.x86_64 efi-srpm-macros-5-6.fc37.noarch elfutils-0.188-3.fc38.x86_64 elfutils-debuginfod-client-0.188-3.fc38.x86_64 elfutils-default-yama-scope-0.188-3.fc38.noarch elfutils-libelf-0.188-3.fc38.x86_64 elfutils-libs-0.188-3.fc38.x86_64 fedora-gpg-keys-38-0.3.noarch fedora-release-38-0.15.noarch fedora-release-common-38-0.15.noarch fedora-release-identity-basic-38-0.15.noarch fedora-repos-38-0.3.noarch fedora-repos-rawhide-38-0.3.noarch file-5.42-5.fc38.x86_64 file-libs-5.42-5.fc38.x86_64 filesystem-3.18-2.fc37.x86_64 findutils-1:4.9.0-2.fc37.x86_64 fonts-srpm-macros-1:2.0.5-10.fc38.noarch fpc-srpm-macros-1.3-6.fc37.noarch gawk-5.1.1-4.fc37.x86_64 gdb-minimal-12.1-10.fc38.x86_64 gdbm-libs-1:1.23-2.fc37.x86_64 ghc-srpm-macros-1.5.0-7.fc37.noarch glibc-2.36.9000-23.fc38.x86_64 glibc-common-2.36.9000-23.fc38.x86_64 glibc-gconv-extra-2.36.9000-23.fc38.x86_64 glibc-minimal-langpack-2.36.9000-23.fc38.x86_64 gmp-1:6.2.1-3.fc37.x86_64 gnat-srpm-macros-5-1.fc38.noarch go-srpm-macros-3.2.0-1.fc38.noarch grep-3.8-2.fc38.x86_64 gzip-1.12-2.fc37.x86_64 info-7.0.1-1.fc38.x86_64 jansson-2.13.1-6.fc38.x86_64 kernel-srpm-macros-1.0-15.fc37.noarch keyutils-libs-1.6.1-5.fc37.x86_64 krb5-libs-1.20.1-7.fc38.x86_64 libacl-2.3.1-4.fc37.x86_64 libarchive-3.6.1-3.fc38.x86_64 libattr-2.5.1-5.fc37.x86_64 libblkid-2.38.1-3.fc38.x86_64 libbrotli-1.0.9-11.fc38.x86_64 libcap-2.48-5.fc37.x86_64 libcap-ng-0.8.3-5.fc38.x86_64 libcom_err-1.46.5-3.fc37.x86_64 libcurl-7.87.0-3.fc38.x86_64 libdb-5.3.28-54.fc38.x86_64 libeconf-0.4.0-4.fc37.x86_64 libevent-2.1.12-8.fc38.x86_64 libfdisk-2.38.1-3.fc38.x86_64 libffi-3.4.4-1.fc38.x86_64 libgcc-13.0.1-0.1.fc38.x86_64 libgomp-13.0.1-0.1.fc38.x86_64 libidn2-2.3.4-1.fc38.x86_64 libmount-2.38.1-3.fc38.x86_64 libnghttp2-1.51.0-2.fc38.x86_64 libnsl2-2.0.0-4.fc37.x86_64 libpkgconf-1.8.0-3.fc37.x86_64 libpsl-0.21.2-2.fc38.x86_64 libpwquality-1.4.5-2.fc38.x86_64 libselinux-3.5-0.rc1.1.fc38.1.x86_64 libsemanage-3.5-0.rc1.1.fc38.x86_64 libsepol-3.5-0.rc1.1.fc38.x86_64 libsigsegv-2.14-3.fc37.x86_64 libsmartcols-2.38.1-3.fc38.x86_64 libssh-0.10.4-2.fc38.x86_64 libssh-config-0.10.4-2.fc38.noarch libstdc++-13.0.1-0.1.fc38.x86_64 libtasn1-4.19.0-1.fc38.x86_64 libtirpc-1.3.3-0.fc37.x86_64 libunistring-1.0-2.fc37.x86_64 libutempter-1.2.1-7.fc37.x86_64 libuuid-2.38.1-3.fc38.x86_64 libverto-0.3.2-4.fc37.x86_64 libxcrypt-4.4.33-5.fc38.x86_64 libxml2-2.10.3-3.fc38.x86_64 libzstd-1.5.2-3.fc37.x86_64 lua-libs-5.4.4-7.fc38.x86_64 lua-srpm-macros-1-7.fc37.noarch lz4-libs-1.9.4-1.fc38.x86_64 mpfr-4.1.1-2.fc38.x86_64 ncurses-base-6.4-2.20230114.fc38.noarch ncurses-libs-6.4-2.20230114.fc38.x86_64 nettle-3.8-2.fc37.x86_64 nim-srpm-macros-3-7.fc37.noarch ocaml-srpm-macros-7-2.fc37.noarch openblas-srpm-macros-2-12.fc37.noarch openldap-2.6.3-1.fc38.x86_64 openssl-libs-1:3.0.7-3.fc38.x86_64 p11-kit-0.24.1-5.fc38.x86_64 p11-kit-trust-0.24.1-5.fc38.x86_64 package-notes-srpm-macros-0.5-6.fc38.noarch pam-1.5.2-15.fc38.x86_64 pam-libs-1.5.2-15.fc38.x86_64 patch-2.7.6-17.fc37.x86_64 pcre2-10.42-1.fc38.x86_64 pcre2-syntax-10.42-1.fc38.noarch perl-srpm-macros-1-47.fc38.noarch pkgconf-1.8.0-3.fc37.x86_64 pkgconf-m4-1.8.0-3.fc37.noarch pkgconf-pkg-config-1.8.0-3.fc37.x86_64 popt-1.19-1.fc38.x86_64 publicsuffix-list-dafsa-20221208-1.fc38.noarch python-srpm-macros-3.11-7.fc38.noarch qt5-srpm-macros-5.15.8-1.fc38.noarch readline-8.2-2.fc38.x86_64 redhat-rpm-config-245-1.fc38.noarch rpm-4.18.0-10.fc38.x86_64 rpm-build-4.18.0-10.fc38.x86_64 rpm-build-libs-4.18.0-10.fc38.x86_64 rpm-libs-4.18.0-10.fc38.x86_64 rpm-sequoia-1.2.0-1.fc38.x86_64 rpmautospec-rpm-macros-0.3.1-2.fc38.noarch rust-srpm-macros-23-1.fc38.noarch sed-4.8-11.fc37.x86_64 setup-2.14.3-1.fc38.noarch shadow-utils-2:4.13-3.fc38.x86_64 sqlite-libs-3.40.1-1.fc38.x86_64 systemd-libs-252.4-598.fc38.x86_64 tar-2:1.34-5.fc38.x86_64 tzdata-2022g-1.fc38.noarch unzip-6.0-58.fc38.x86_64 util-linux-2.38.1-3.fc38.x86_64 util-linux-core-2.38.1-3.fc38.x86_64 which-2.21-36.fc38.x86_64 xxhash-libs-0.8.1-3.fc37.x86_64 xz-5.2.9-1.fc38.x86_64 xz-libs-5.2.9-1.fc38.x86_64 zip-3.0-35.fc38.x86_64 zlib-1.2.13-2.fc38.x86_64 zstd-1.5.2-3.fc37.x86_64 Complete! Finish: dnf install Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: libarchive-3.6.1-3.fc38.x86_64 publicsuffix-list-dafsa-20221208-1.fc38.noarch cyrus-sasl-lib-2.1.28-8.fc38.x86_64 fedora-gpg-keys-38-0.3.noarch libxml2-2.10.3-3.fc38.x86_64 libxcrypt-4.4.33-5.fc38.x86_64 sqlite-libs-3.40.1-1.fc38.x86_64 xz-libs-5.2.9-1.fc38.x86_64 libsepol-3.5-0.rc1.1.fc38.x86_64 libfdisk-2.38.1-3.fc38.x86_64 libverto-0.3.2-4.fc37.x86_64 libnsl2-2.0.0-4.fc37.x86_64 elfutils-libs-0.188-3.fc38.x86_64 xxhash-libs-0.8.1-3.fc37.x86_64 gpg-pubkey-5323552a-6112bcdc ncurses-base-6.4-2.20230114.fc38.noarch ocaml-srpm-macros-7-2.fc37.noarch zlib-1.2.13-2.fc38.x86_64 file-5.42-5.fc38.x86_64 libsemanage-3.5-0.rc1.1.fc38.x86_64 rpm-libs-4.18.0-10.fc38.x86_64 libstdc++-13.0.1-0.1.fc38.x86_64 openssl-libs-3.0.7-3.fc38.x86_64 kernel-srpm-macros-1.0-15.fc37.noarch info-7.0.1-1.fc38.x86_64 redhat-rpm-config-245-1.fc38.noarch findutils-4.9.0-2.fc37.x86_64 cracklib-2.9.7-30.fc38.x86_64 python-srpm-macros-3.11-7.fc38.noarch gmp-6.2.1-3.fc37.x86_64 libzstd-1.5.2-3.fc37.x86_64 file-libs-5.42-5.fc38.x86_64 pam-libs-1.5.2-15.fc38.x86_64 dwz-0.15-1.fc38.x86_64 cpio-2.13-13.fc38.x86_64 rpm-build-4.18.0-10.fc38.x86_64 coreutils-9.1-10.fc38.x86_64 lua-libs-5.4.4-7.fc38.x86_64 readline-8.2-2.fc38.x86_64 libsmartcols-2.38.1-3.fc38.x86_64 fedora-release-common-38-0.15.noarch fedora-release-identity-basic-38-0.15.noarch libeconf-0.4.0-4.fc37.x86_64 gpg-pubkey-eb10b464-6202d9c6 fonts-srpm-macros-2.0.5-10.fc38.noarch fedora-repos-rawhide-38-0.3.noarch p11-kit-0.24.1-5.fc38.x86_64 binutils-gold-2.39-6.fc38.x86_64 rpmautospec-rpm-macros-0.3.1-2.fc38.noarch perl-srpm-macros-1-47.fc38.noarch grep-3.8-2.fc38.x86_64 elfutils-libelf-0.188-3.fc38.x86_64 glibc-2.36.9000-23.fc38.x86_64 libattr-2.5.1-5.fc37.x86_64 setup-2.14.3-1.fc38.noarch patch-2.7.6-17.fc37.x86_64 gawk-5.1.1-4.fc37.x86_64 nettle-3.8-2.fc37.x86_64 libcurl-7.87.0-3.fc38.x86_64 bzip2-1.0.8-12.fc37.x86_64 crypto-policies-20221215-2.gita4c31a3.fc38.noarch libcom_err-1.46.5-3.fc37.x86_64 libmount-2.38.1-3.fc38.x86_64 xz-5.2.9-1.fc38.x86_64 pkgconf-1.8.0-3.fc37.x86_64 which-2.21-36.fc38.x86_64 libutempter-1.2.1-7.fc37.x86_64 libgomp-13.0.1-0.1.fc38.x86_64 libpkgconf-1.8.0-3.fc37.x86_64 libcap-2.48-5.fc37.x86_64 authselect-1.4.2-1.fc38.x86_64 libssh-config-0.10.4-2.fc38.noarch unzip-6.0-58.fc38.x86_64 bzip2-libs-1.0.8-12.fc37.x86_64 rust-srpm-macros-23-1.fc38.noarch qt5-srpm-macros-5.15.8-1.fc38.noarch gdbm-libs-1.23-2.fc37.x86_64 tzdata-2022g-1.fc38.noarch ghc-srpm-macros-1.5.0-7.fc37.noarch nim-srpm-macros-3-7.fc37.noarch alternatives-1.21-1.fc38.x86_64 libuuid-2.38.1-3.fc38.x86_64 p11-kit-trust-0.24.1-5.fc38.x86_64 mpfr-4.1.1-2.fc38.x86_64 shadow-utils-4.13-3.fc38.x86_64 libbrotli-1.0.9-11.fc38.x86_64 libffi-3.4.4-1.fc38.x86_64 glibc-common-2.36.9000-23.fc38.x86_64 jansson-2.13.1-6.fc38.x86_64 pkgconf-pkg-config-1.8.0-3.fc37.x86_64 sed-4.8-11.fc37.x86_64 pcre2-10.42-1.fc38.x86_64 elfutils-0.188-3.fc38.x86_64 pam-1.5.2-15.fc38.x86_64 coreutils-common-9.1-10.fc38.x86_64 rpm-sequoia-1.2.0-1.fc38.x86_64 package-notes-srpm-macros-0.5-6.fc38.noarch efi-srpm-macros-5-6.fc37.noarch gdb-minimal-12.1-10.fc38.x86_64 pkgconf-m4-1.8.0-3.fc37.noarch authselect-libs-1.4.2-1.fc38.x86_64 krb5-libs-1.20.1-7.fc38.x86_64 systemd-libs-252.4-598.fc38.x86_64 libsigsegv-2.14-3.fc37.x86_64 libpsl-0.21.2-2.fc38.x86_64 libgcc-13.0.1-0.1.fc38.x86_64 lz4-libs-1.9.4-1.fc38.x86_64 filesystem-3.18-2.fc37.x86_64 basesystem-11-14.fc37.noarch popt-1.19-1.fc38.x86_64 libacl-2.3.1-4.fc37.x86_64 keyutils-libs-1.6.1-5.fc37.x86_64 fedora-release-38-0.15.noarch glibc-minimal-langpack-2.36.9000-23.fc38.x86_64 elfutils-default-yama-scope-0.188-3.fc38.noarch ncurses-libs-6.4-2.20230114.fc38.x86_64 audit-libs-3.0.9-3.fc38.x86_64 libselinux-3.5-0.rc1.1.fc38.1.x86_64 util-linux-core-2.38.1-3.fc38.x86_64 libtirpc-1.3.3-0.fc37.x86_64 fedora-repos-38-0.3.noarch libcap-ng-0.8.3-5.fc38.x86_64 libidn2-2.3.4-1.fc38.x86_64 rpm-build-libs-4.18.0-10.fc38.x86_64 binutils-2.39-6.fc38.x86_64 tar-1.34-5.fc38.x86_64 diffutils-3.9-1.fc38.x86_64 ed-1.19-1.fc38.x86_64 elfutils-debuginfod-client-0.188-3.fc38.x86_64 lua-srpm-macros-1-7.fc37.noarch libevent-2.1.12-8.fc38.x86_64 go-srpm-macros-3.2.0-1.fc38.noarch zstd-1.5.2-3.fc37.x86_64 glibc-gconv-extra-2.36.9000-23.fc38.x86_64 zip-3.0-35.fc38.x86_64 libssh-0.10.4-2.fc38.x86_64 bash-5.2.15-1.fc38.x86_64 pcre2-syntax-10.42-1.fc38.noarch libtasn1-4.19.0-1.fc38.x86_64 curl-7.87.0-3.fc38.x86_64 ansible-srpm-macros-1-8.1.fc38.noarch util-linux-2.38.1-3.fc38.x86_64 ca-certificates-2022.2.54-5.fc37.noarch debugedit-5.0-5.fc37.x86_64 libdb-5.3.28-54.fc38.x86_64 openldap-2.6.3-1.fc38.x86_64 gnat-srpm-macros-5-1.fc38.noarch libnghttp2-1.51.0-2.fc38.x86_64 openblas-srpm-macros-2-12.fc37.noarch libblkid-2.38.1-3.fc38.x86_64 gzip-1.12-2.fc37.x86_64 libpwquality-1.4.5-2.fc38.x86_64 libunistring-1.0-2.fc37.x86_64 rpm-4.18.0-10.fc38.x86_64 fpc-srpm-macros-1.3-6.fc37.noarch Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1658534400 Wrote: /builddir/build/SRPMS/seqan2-2.4.0-18.fc38.src.rpm Finish: rpmbuild -bs cp: ‘var/lib/mock/fedora-rawhide-x86_64-1674330935.721363/root/var/log’: No such file or directory INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1674330935.721363/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-x86_64-1674330935.721363/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-x86_64-1674330935.721363/root/var/log/dnf.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-jjz5cud0/seqan2/seqan2.spec) Config(child) 0 minutes 59 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running (timeout=18000): unbuffer mock --rebuild /var/lib/copr-rpmbuild/results/seqan2-2.4.0-18.fc38.src.rpm --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1674330935.721363 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 3.5 starting (python version = 3.11.0, NVR = mock-3.5-1.fc37)... Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/results/seqan2-2.4.0-18.fc38.src.rpm) Config(fedora-rawhide-x86_64) Start: clean chroot Finish: clean chroot Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1674330935.721363/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1674330935.721363/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 3.5 INFO: Mock Version: 3.5 Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1674330935.721363/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 3.5 INFO: Mock Version: 3.5 Start: dnf update No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 15 kB/s | 3.7 kB 00:00 fedora 86 kB/s | 21 kB 00:00 Dependencies resolved. Nothing to do. Complete! Finish: dnf update Finish: chroot init Start: build phase for seqan2-2.4.0-18.fc38.src.rpm Start: build setup for seqan2-2.4.0-18.fc38.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1658534400 Wrote: /builddir/build/SRPMS/seqan2-2.4.0-18.fc38.src.rpm No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 15 kB/s | 3.7 kB 00:00 fedora 86 kB/s | 21 kB 00:00 Dependencies resolved. ====================================================================================== Package Arch Version Repo Size ====================================================================================== Installing: boost-devel x86_64 1.78.0-11.fc38 copr_base 11 M bzip2-devel x86_64 1.0.8-12.fc37 fedora 214 k cmake x86_64 3.25.2-1.fc38 copr_base 6.9 M coin-or-lemon-devel x86_64 1.3.1-25.fc37 fedora 304 k gcc-c++ x86_64 13.0.1-0.1.fc38 fedora 13 M libstdc++-static x86_64 13.0.1-0.1.fc38 fedora 886 k llvm-devel x86_64 15.0.7-2.fc38 copr_base 3.4 M make x86_64 1:4.4-1.fc38 fedora 580 k python3-devel x86_64 3.11.1-3.fc38 copr_base 235 k qt-devel x86_64 1:4.8.7-70.fc38 fedora 10 M zlib-devel x86_64 1.2.13-2.fc38 fedora 45 k Installing dependencies: Lmod x86_64 8.7.18-1.fc38 fedora 258 k MUMPS x86_64 5.5.1-1.fc38 fedora 2.0 M MUMPS-common noarch 5.5.1-1.fc38 fedora 830 k alsa-lib x86_64 1.2.8-2.fc38 fedora 517 k annobin-docs noarch 11.06-2.fc38 fedora 93 k annobin-plugin-gcc x86_64 11.06-2.fc38 fedora 890 k avahi-libs x86_64 0.8-19.fc38 fedora 67 k boost x86_64 1.78.0-11.fc38 copr_base 14 k boost-atomic x86_64 1.78.0-11.fc38 copr_base 20 k boost-chrono x86_64 1.78.0-11.fc38 copr_base 27 k boost-container x86_64 1.78.0-11.fc38 copr_base 40 k boost-context x86_64 1.78.0-11.fc38 copr_base 17 k boost-contract x86_64 1.78.0-11.fc38 copr_base 47 k boost-coroutine x86_64 1.78.0-11.fc38 copr_base 22 k boost-date-time x86_64 1.78.0-11.fc38 copr_base 16 k boost-fiber x86_64 1.78.0-11.fc38 copr_base 42 k boost-filesystem x86_64 1.78.0-11.fc38 copr_base 65 k boost-graph x86_64 1.78.0-11.fc38 copr_base 151 k boost-iostreams x86_64 1.78.0-11.fc38 copr_base 42 k boost-json x86_64 1.78.0-11.fc38 copr_base 111 k boost-locale x86_64 1.78.0-11.fc38 copr_base 221 k boost-log x86_64 1.78.0-11.fc38 copr_base 492 k boost-math x86_64 1.78.0-11.fc38 copr_base 199 k boost-nowide x86_64 1.78.0-11.fc38 copr_base 21 k boost-numpy3 x86_64 1.78.0-11.fc38 copr_base 30 k boost-program-options x86_64 1.78.0-11.fc38 copr_base 109 k boost-python3 x86_64 1.78.0-11.fc38 copr_base 97 k boost-random x86_64 1.78.0-11.fc38 copr_base 26 k boost-regex x86_64 1.78.0-11.fc38 copr_base 112 k boost-serialization x86_64 1.78.0-11.fc38 copr_base 135 k boost-stacktrace x86_64 1.78.0-11.fc38 copr_base 31 k boost-system x86_64 1.78.0-11.fc38 copr_base 16 k boost-test x86_64 1.78.0-11.fc38 copr_base 238 k boost-thread x86_64 1.78.0-11.fc38 copr_base 60 k boost-timer x86_64 1.78.0-11.fc38 copr_base 26 k boost-type_erasure x86_64 1.78.0-11.fc38 copr_base 35 k boost-wave x86_64 1.78.0-11.fc38 copr_base 224 k brotli x86_64 1.0.9-11.fc38 copr_base 316 k brotli-devel x86_64 1.0.9-11.fc38 copr_base 32 k byte-buddy noarch 1.12.10-2.fc38 fedora 2.9 M byte-buddy-agent noarch 1.12.10-2.fc38 fedora 65 k cairo x86_64 1.17.6-2.fc37 fedora 676 k cliquer-libs x86_64 1.22-4.fc37 fedora 38 k cmake-data noarch 3.25.2-1.fc38 copr_base 1.7 M cmake-filesystem x86_64 3.25.2-1.fc38 copr_base 17 k cmake-rpm-macros noarch 3.25.2-1.fc38 copr_base 17 k coin-or-Cbc x86_64 2.10.5-10.fc37 fedora 824 k coin-or-Cgl x86_64 0.60.3-8.fc38 fedora 428 k coin-or-Clp x86_64 1.17.6-11.fc38 fedora 926 k coin-or-CoinUtils x86_64 2.11.4-8.fc38 fedora 478 k coin-or-Osi x86_64 0.108.6-6.fc37 fedora 317 k coin-or-lemon x86_64 1.3.1-25.fc37 fedora 81 k copy-jdk-configs noarch 4.1-1.fc38 fedora 28 k cpp x86_64 13.0.1-0.1.fc38 fedora 11 M crypto-policies-scripts noarch 20221215-2.gita4c31a3.fc38 copr_base 104 k cups-libs x86_64 1:2.4.2-5.fc38 fedora 268 k dbus-libs x86_64 1:1.14.4-1.fc38 fedora 156 k emacs-filesystem noarch 1:28.2-1.fc38 fedora 7.1 k expat x86_64 2.5.0-1.fc38 fedora 110 k flexiblas x86_64 3.3.0-1.fc38 fedora 32 k flexiblas-netlib x86_64 3.3.0-1.fc38 fedora 3.2 M flexiblas-openblas-openmp x86_64 3.3.0-1.fc38 fedora 17 k fontconfig x86_64 2.14.1-2.fc38 fedora 294 k fontconfig-devel x86_64 2.14.1-2.fc38 fedora 164 k fonts-filesystem noarch 1:2.0.5-10.fc38 fedora 8.0 k freetype x86_64 2.12.1-3.fc37 fedora 407 k freetype-devel x86_64 2.12.1-3.fc37 fedora 895 k gc x86_64 8.2.2-1.fc38 fedora 110 k gcc x86_64 13.0.1-0.1.fc38 fedora 34 M gcc-plugin-annobin x86_64 13.0.1-0.1.fc38 fedora 30 k gecode x86_64 6.2.0-10.fc37 fedora 3.2 M gettext x86_64 0.21.1-1.fc38 fedora 1.0 M gettext-envsubst x86_64 0.21.1-1.fc38 fedora 36 k gettext-libs x86_64 0.21.1-1.fc38 fedora 319 k gettext-runtime x86_64 0.21.1-1.fc38 fedora 117 k gl-manpages noarch 1.1-25.20190306.fc37 fedora 1.2 M glib2 x86_64 2.74.1-3.fc38 copr_base 2.7 M glib2-devel x86_64 2.74.1-3.fc38 copr_base 516 k glibc-devel x86_64 2.36.9000-23.fc38 copr_base 46 k glibc-headers-x86 noarch 2.36.9000-23.fc38 copr_base 454 k glpk x86_64 5.0-5.fc37 fedora 383 k glx-utils x86_64 8.4.0-14.20210504git0f9e7d9.fc37 fedora 41 k gnutls x86_64 3.7.8-11.fc38 copr_base 1.1 M google-noto-fonts-common noarch 20201206^1.git0c78c8329-9.fc38 fedora 18 k google-noto-sans-vf-fonts noarch 20201206^1.git0c78c8329-9.fc38 fedora 729 k graphite2 x86_64 1.3.14-11.fc38 copr_base 95 k graphite2-devel x86_64 1.3.14-11.fc38 copr_base 21 k gsl x86_64 2.7.1-3.fc38 fedora 1.1 M guile22 x86_64 2.2.7-6.fc37 fedora 6.5 M harfbuzz x86_64 6.0.0-2.fc38 fedora 819 k harfbuzz-devel x86_64 6.0.0-2.fc38 fedora 394 k harfbuzz-icu x86_64 6.0.0-2.fc38 fedora 16 k hwdata noarch 0.366-1.fc38 fedora 1.5 M jacop noarch 4.8-9.fc37 fedora 1.7 M java-17-openjdk-headless x86_64 1:17.0.6.0.9-0.2.ea.fc38 fedora 42 M java-diff-utils noarch 4.12-1.fc37 fedora 78 k javapackages-filesystem noarch 6.1.0-6.fc38 copr_base 13 k javapackages-tools noarch 6.1.0-6.fc38 copr_base 33 k jbigkit-libs x86_64 2.1-24.fc37 fedora 53 k jline-builtins noarch 3.22.0-1.fc38 fedora 274 k jline-reader noarch 3.22.0-1.fc38 fedora 173 k jline-style noarch 3.22.0-1.fc38 fedora 35 k jline-terminal noarch 3.22.0-1.fc38 fedora 295 k jline-terminal-jna noarch 3.22.0-1.fc38 fedora 72 k jna x86_64 5.13.0-1.fc38 fedora 288 k jsoncpp x86_64 1.9.5-4.fc38 copr_base 97 k kernel-headers x86_64 6.2.0-0.rc4.git0.1.fc38 fedora 1.5 M langpacks-core-font-en noarch 3.0-27.fc38 fedora 9.9 k lcms2 x86_64 2.14-1.fc38 fedora 176 k libICE x86_64 1.0.10-9.fc37 fedora 71 k libICE-devel x86_64 1.0.10-9.fc37 fedora 46 k libSM x86_64 1.2.3-11.fc37 fedora 42 k libSM-devel x86_64 1.2.3-11.fc37 fedora 12 k libX11 x86_64 1.8.3-2.fc38 fedora 649 k libX11-common noarch 1.8.3-2.fc38 fedora 178 k libX11-devel x86_64 1.8.3-2.fc38 fedora 1.0 M libX11-xcb x86_64 1.8.3-2.fc38 fedora 11 k libXau x86_64 1.0.11-1.fc38 fedora 31 k libXau-devel x86_64 1.0.11-1.fc38 fedora 13 k libXcursor x86_64 1.2.1-2.fc37 fedora 30 k libXcursor-devel x86_64 1.2.1-2.fc37 fedora 40 k libXext x86_64 1.3.5-1.fc38 fedora 39 k libXext-devel x86_64 1.3.5-1.fc38 fedora 85 k libXfixes x86_64 6.0.0-4.fc37 fedora 19 k libXfixes-devel x86_64 6.0.0-4.fc37 fedora 12 k libXft x86_64 2.3.6-1.fc38 fedora 71 k libXft-devel x86_64 2.3.6-1.fc38 fedora 50 k libXi x86_64 1.8-3.fc37 fedora 39 k libXi-devel x86_64 1.8-3.fc37 fedora 116 k libXinerama x86_64 1.1.5-1.fc38 fedora 14 k libXinerama-devel x86_64 1.1.5-1.fc38 fedora 13 k libXrandr x86_64 1.5.2-9.fc37 fedora 27 k libXrandr-devel x86_64 1.5.2-9.fc37 fedora 19 k libXrender x86_64 0.9.11-1.fc38 fedora 27 k libXrender-devel x86_64 0.9.11-1.fc38 fedora 19 k libXt x86_64 1.2.1-3.fc37 fedora 180 k libXt-devel x86_64 1.2.1-3.fc37 fedora 460 k libXv x86_64 1.0.11-17.fc37 fedora 18 k libXv-devel x86_64 1.0.11-17.fc37 fedora 44 k libXxf86vm x86_64 1.1.5-1.fc38 fedora 18 k libb2 x86_64 0.98.1-7.fc37 fedora 25 k libblkid-devel x86_64 2.38.1-3.fc38 fedora 16 k libdrm x86_64 2.4.114-1.fc38 fedora 159 k libedit x86_64 3.1-44.20221030cvs.fc38 fedora 106 k libedit-devel x86_64 3.1-44.20221030cvs.fc38 fedora 40 k libevdev x86_64 1.13.0-2.fc38 copr_base 45 k libffi-devel x86_64 3.4.4-1.fc38 fedora 28 k libgfortran x86_64 13.0.1-0.1.fc38 fedora 889 k libglvnd x86_64 1:1.6.0-1.fc38 fedora 134 k libglvnd-core-devel x86_64 1:1.6.0-1.fc38 fedora 17 k libglvnd-devel x86_64 1:1.6.0-1.fc38 fedora 163 k libglvnd-egl x86_64 1:1.6.0-1.fc38 fedora 36 k libglvnd-gles x86_64 1:1.6.0-1.fc38 fedora 31 k libglvnd-glx x86_64 1:1.6.0-1.fc38 fedora 140 k libglvnd-opengl x86_64 1:1.6.0-1.fc38 fedora 42 k libgudev x86_64 237-3.fc37 fedora 35 k libicu x86_64 72.1-1.fc38 fedora 10 M libicu-devel x86_64 72.1-1.fc38 fedora 918 k libinput x86_64 1.22.1-2.fc38 copr_base 200 k libjpeg-turbo x86_64 2.1.4-1.fc38 fedora 181 k libmng x86_64 2.0.3-16.fc37 fedora 187 k libmount-devel x86_64 2.38.1-3.fc38 fedora 18 k libmpc x86_64 1.3.1-1.fc38 fedora 70 k libnauty x86_64 2.8.6-1.fc38 fedora 597 k libpciaccess x86_64 0.16-7.fc37 fedora 27 k libpng x86_64 2:1.6.37-13.fc37 fedora 119 k libpng-devel x86_64 2:1.6.37-13.fc37 fedora 290 k libquadmath x86_64 13.0.1-0.1.fc38 fedora 179 k libquadmath-devel x86_64 13.0.1-0.1.fc38 fedora 20 k libselinux-devel x86_64 3.5-0.rc1.1.fc38.1 fedora 150 k libsepol-devel x86_64 3.5-0.rc1.1.fc38 fedora 49 k libstdc++-devel x86_64 13.0.1-0.1.fc38 fedora 2.6 M libtiff x86_64 4.4.0-4.fc37 fedora 197 k libtool-ltdl x86_64 2.4.7-5.fc38 fedora 37 k libuv x86_64 1:1.44.2-2.fc37 fedora 151 k libwacom x86_64 2.4.0-1.fc37 fedora 42 k libwacom-data noarch 2.4.0-1.fc37 fedora 180 k libwayland-client x86_64 1.21.0-1.fc37 fedora 33 k libwayland-server x86_64 1.21.0-1.fc37 fedora 41 k libwebp x86_64 1.3.0-1.fc38 fedora 283 k libxcb x86_64 1.13.1-11.fc38 copr_base 226 k libxcb-devel x86_64 1.13.1-11.fc38 copr_base 1.0 M libxcrypt-devel x86_64 4.4.33-5.fc38 fedora 30 k libxkbcommon x86_64 1.5.0-1.fc38 fedora 140 k libxkbcommon-x11 x86_64 1.5.0-1.fc38 fedora 22 k libxml2-devel x86_64 2.10.3-3.fc38 copr_base 502 k libxshmfence x86_64 1.3-11.fc37 fedora 12 k lksctp-tools x86_64 1.0.19-2.fc37 fedora 91 k llvm x86_64 15.0.7-2.fc38 copr_base 14 M llvm-libs x86_64 15.0.7-2.fc38 copr_base 25 M llvm-static x86_64 15.0.7-2.fc38 copr_base 32 M llvm-test x86_64 15.0.7-2.fc38 copr_base 582 k lua x86_64 5.4.4-7.fc38 fedora 189 k lua-filesystem x86_64 1.8.0-7.fc37 fedora 34 k lua-json noarch 1.3.4-2.fc37 fedora 30 k lua-lpeg x86_64 1.0.2-9.fc37 fedora 67 k lua-posix x86_64 35.1-4.fc37 fedora 139 k lua-term x86_64 0.07-16.fc37 fedora 15 k mesa-libEGL x86_64 22.3.3-2.fc38 copr_base 130 k mesa-libGL x86_64 22.3.3-2.fc38 copr_base 176 k mesa-libGLU x86_64 9.0.1-7.fc37 fedora 153 k mesa-libGLU-devel x86_64 9.0.1-7.fc37 fedora 13 k mesa-libgbm x86_64 22.3.3-2.fc38 copr_base 45 k mesa-libglapi x86_64 22.3.3-2.fc38 copr_base 54 k metis x86_64 5.1.0-33.fc37 fedora 573 k mockito noarch 3.12.4-5.fc38 fedora 583 k mp x86_64 3.1.0-41.20200303git7fd4828.fc38 copr_base 973 k mpdecimal x86_64 2.5.1-4.fc37 fedora 102 k mtdev x86_64 1.1.6-4.fc37 fedora 20 k ncurses-c++-libs x86_64 6.4-2.20230114.fc38 fedora 37 k ncurses-devel x86_64 6.4-2.20230114.fc38 fedora 549 k nspr x86_64 4.35.0-3.fc38 fedora 136 k nss x86_64 3.87.0-1.fc38 fedora 692 k nss-softokn x86_64 3.87.0-1.fc38 fedora 1.0 M nss-softokn-freebl x86_64 3.87.0-1.fc38 fedora 326 k nss-sysinit x86_64 3.87.0-1.fc38 fedora 18 k nss-util x86_64 3.87.0-1.fc38 fedora 86 k objectweb-asm noarch 9.3-4.fc38 fedora 354 k objenesis noarch 3.3-1.fc38 fedora 115 k openblas x86_64 0.3.21-4.fc38 fedora 35 k openblas-openmp x86_64 0.3.21-4.fc38 fedora 5.1 M opentest4j noarch 1.2.0-11.fc38 fedora 24 k pcre2-devel x86_64 10.42-1.fc38 fedora 506 k pcre2-utf16 x86_64 10.42-1.fc38 fedora 213 k pcre2-utf32 x86_64 10.42-1.fc38 fedora 201 k pixman x86_64 0.40.0-6.fc37 fedora 277 k procps-ng x86_64 3.3.17-8.fc38 fedora 339 k pyproject-rpm-macros noarch 1.5.1-2.fc38 copr_base 41 k python-pip-wheel noarch 22.3.1-2.fc38 copr_base 1.4 M python-rpm-macros noarch 3.11-7.fc38 fedora 20 k python-setuptools-wheel noarch 65.5.1-1.fc38 fedora 715 k python3 x86_64 3.11.1-3.fc38 copr_base 28 k python3-libs x86_64 3.11.1-3.fc38 copr_base 9.2 M python3-numpy x86_64 1:1.23.5-2.fc38 copr_base 7.3 M python3-packaging noarch 23.0-1.fc38 copr_base 98 k python3-rpm-generators noarch 14-1.fc38 fedora 30 k python3-rpm-macros noarch 3.11-7.fc38 fedora 15 k qt x86_64 1:4.8.7-70.fc38 fedora 4.7 M qt-common noarch 1:4.8.7-70.fc38 fedora 7.5 k qt-settings noarch 37.0-1.fc38 fedora 11 k qt-x11 x86_64 1:4.8.7-70.fc38 fedora 13 M qt5-qtbase x86_64 5.15.8-2.fc38 fedora 3.6 M qt5-qtbase-common noarch 5.15.8-2.fc38 fedora 11 k qt5-qtbase-gui x86_64 5.15.8-2.fc38 fedora 6.4 M rhash x86_64 1.4.3-1.fc38 fedora 193 k scala noarch 2.13.10-1.fc38 fedora 10 M scala-library noarch 2.13.10-1.fc38 fedora 5.0 M scala-reflect noarch 2.13.10-1.fc38 fedora 3.2 M scotch x86_64 6.1.2-3.fc37 fedora 397 k suitesparse x86_64 5.13.0-1.fc38 fedora 1.1 M sysprof-capture-devel x86_64 3.46.0-1.fc38 fedora 58 k tcl x86_64 1:8.6.12-3.fc38 fedora 1.1 M tzdata-java noarch 2022g-1.fc38 fedora 208 k unixODBC x86_64 2.3.11-1.fc38 fedora 486 k vim-filesystem noarch 2:9.0.1221-1.fc38 fedora 18 k xcb-util x86_64 0.4.1-1.fc38 fedora 18 k xcb-util-image x86_64 0.4.1-1.fc38 fedora 19 k xcb-util-keysyms x86_64 0.4.1-1.fc38 fedora 14 k xcb-util-renderutil x86_64 0.3.10-1.fc38 fedora 17 k xcb-util-wm x86_64 0.4.2-1.fc38 fedora 31 k xkeyboard-config noarch 2.36-3.fc38 fedora 956 k xml-common noarch 0.6.3-59.fc37 fedora 31 k xorg-x11-proto-devel noarch 2022.2-2.fc38 fedora 299 k xz-devel x86_64 5.2.9-1.fc38 fedora 58 k Transaction Summary ====================================================================================== Install 275 Packages Total size: 361 M Total download size: 224 M Installed size: 1.5 G Downloading Packages: [SKIPPED] cmake-3.25.2-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] cmake-data-3.25.2-1.fc38.noarch.rpm: Already downloaded [SKIPPED] cmake-filesystem-3.25.2-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] cmake-rpm-macros-3.25.2-1.fc38.noarch.rpm: Already downloaded [SKIPPED] crypto-policies-scripts-20221215-2.gita4c31a3.fc38.noarch.rpm: Already downloaded [SKIPPED] glib2-2.74.1-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] glib2-devel-2.74.1-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] glibc-devel-2.36.9000-23.fc38.x86_64.rpm: Already downloaded [SKIPPED] glibc-headers-x86-2.36.9000-23.fc38.noarch.rpm: Already downloaded [SKIPPED] gnutls-3.7.8-11.fc38.x86_64.rpm: Already downloaded [SKIPPED] graphite2-1.3.14-11.fc38.x86_64.rpm: Already downloaded [SKIPPED] jsoncpp-1.9.5-4.fc38.x86_64.rpm: Already downloaded [SKIPPED] libevdev-1.13.0-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] libinput-1.22.1-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] libxcb-1.13.1-11.fc38.x86_64.rpm: Already downloaded [SKIPPED] 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python-rpm-macros-3.11-7.fc38.noarch.rpm: Already downloaded [SKIPPED] python-setuptools-wheel-65.5.1-1.fc38.noarch.rpm: Already downloaded [SKIPPED] python3-rpm-generators-14-1.fc38.noarch.rpm: Already downloaded [SKIPPED] python3-rpm-macros-3.11-7.fc38.noarch.rpm: Already downloaded [SKIPPED] qt-settings-37.0-1.fc38.noarch.rpm: Already downloaded [SKIPPED] qt5-qtbase-5.15.8-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] qt5-qtbase-common-5.15.8-2.fc38.noarch.rpm: Already downloaded [SKIPPED] qt5-qtbase-gui-5.15.8-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] rhash-1.4.3-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] sysprof-capture-devel-3.46.0-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] vim-filesystem-9.0.1221-1.fc38.noarch.rpm: Already downloaded [SKIPPED] xcb-util-0.4.1-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] xcb-util-image-0.4.1-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] xcb-util-keysyms-0.4.1-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] 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boost-fiber-1.78.0-11.fc38.x86_64.rp 952 kB/s | 42 kB 00:00 (149/275): boost-filesystem-1.78.0-11.fc38.x86_ 1.6 MB/s | 65 kB 00:00 (150/275): boost-graph-1.78.0-11.fc38.x86_64.rp 1.1 MB/s | 151 kB 00:00 (151/275): boost-iostreams-1.78.0-11.fc38.x86_6 328 kB/s | 42 kB 00:00 (152/275): boost-devel-1.78.0-11.fc38.x86_64.rp 54 MB/s | 11 MB 00:00 (153/275): boost-json-1.78.0-11.fc38.x86_64.rpm 3.5 MB/s | 111 kB 00:00 (154/275): boost-locale-1.78.0-11.fc38.x86_64.r 7.0 MB/s | 221 kB 00:00 (155/275): boost-log-1.78.0-11.fc38.x86_64.rpm 27 MB/s | 492 kB 00:00 (156/275): boost-math-1.78.0-11.fc38.x86_64.rpm 9.5 MB/s | 199 kB 00:00 (157/275): boost-nowide-1.78.0-11.fc38.x86_64.r 1.0 MB/s | 21 kB 00:00 (158/275): boost-numpy3-1.78.0-11.fc38.x86_64.r 3.3 MB/s | 30 kB 00:00 (159/275): boost-program-options-1.78.0-11.fc38 8.5 MB/s | 109 kB 00:00 (160/275): boost-python3-1.78.0-11.fc38.x86_64. 7.0 MB/s | 97 kB 00:00 (161/275): boost-random-1.78.0-11.fc38.x86_64.r 2.7 MB/s | 26 kB 00:00 (162/275): 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xz-devel-5.2.9-1.fc38.x86_64.rpm 774 kB/s | 58 kB 00:00 -------------------------------------------------------------------------------- Total 37 MB/s | 224 MB 00:06 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: copy-jdk-configs-4.1-1.fc38.noarch 1/1 Running scriptlet: java-17-openjdk-headless-1:17.0.6.0.9-0.2.ea.fc38.x8 1/1 Preparing : 1/1 Installing : javapackages-filesystem-6.1.0-6.fc38.noarch 1/275 Installing : xorg-x11-proto-devel-2022.2-2.fc38.noarch 2/275 Installing : boost-system-1.78.0-11.fc38.x86_64 3/275 Installing : libicu-72.1-1.fc38.x86_64 4/275 Installing : boost-chrono-1.78.0-11.fc38.x86_64 5/275 Installing : boost-thread-1.78.0-11.fc38.x86_64 6/275 Installing : nspr-4.35.0-3.fc38.x86_64 7/275 Installing : libpng-2:1.6.37-13.fc37.x86_64 8/275 Installing : libglvnd-1:1.6.0-1.fc38.x86_64 9/275 Installing : libICE-1.0.10-9.fc37.x86_64 10/275 Installing : expat-2.5.0-1.fc38.x86_64 11/275 Installing : cmake-filesystem-3.25.2-1.fc38.x86_64 12/275 Installing : libSM-1.2.3-11.fc37.x86_64 13/275 Installing : nss-util-3.87.0-1.fc38.x86_64 14/275 Installing : zlib-devel-1.2.13-2.fc38.x86_64 15/275 Installing : libquadmath-13.0.1-0.1.fc38.x86_64 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libXrandr-1.5.2-9.fc37.x86_64 159/275 Verifying : libXrandr-devel-1.5.2-9.fc37.x86_64 160/275 Verifying : libXrender-0.9.11-1.fc38.x86_64 161/275 Verifying : libXrender-devel-0.9.11-1.fc38.x86_64 162/275 Verifying : libXt-1.2.1-3.fc37.x86_64 163/275 Verifying : libXt-devel-1.2.1-3.fc37.x86_64 164/275 Verifying : libXv-1.0.11-17.fc37.x86_64 165/275 Verifying : libXv-devel-1.0.11-17.fc37.x86_64 166/275 Verifying : libXxf86vm-1.1.5-1.fc38.x86_64 167/275 Verifying : libb2-0.98.1-7.fc37.x86_64 168/275 Verifying : libblkid-devel-2.38.1-3.fc38.x86_64 169/275 Verifying : libdrm-2.4.114-1.fc38.x86_64 170/275 Verifying : libedit-3.1-44.20221030cvs.fc38.x86_64 171/275 Verifying : libedit-devel-3.1-44.20221030cvs.fc38.x86_64 172/275 Verifying : libffi-devel-3.4.4-1.fc38.x86_64 173/275 Verifying : libgfortran-13.0.1-0.1.fc38.x86_64 174/275 Verifying : libglvnd-1:1.6.0-1.fc38.x86_64 175/275 Verifying : libglvnd-core-devel-1:1.6.0-1.fc38.x86_64 176/275 Verifying : libglvnd-devel-1:1.6.0-1.fc38.x86_64 177/275 Verifying : libglvnd-egl-1:1.6.0-1.fc38.x86_64 178/275 Verifying : libglvnd-gles-1:1.6.0-1.fc38.x86_64 179/275 Verifying : libglvnd-glx-1:1.6.0-1.fc38.x86_64 180/275 Verifying : libglvnd-opengl-1:1.6.0-1.fc38.x86_64 181/275 Verifying : libgudev-237-3.fc37.x86_64 182/275 Verifying : libicu-72.1-1.fc38.x86_64 183/275 Verifying : libicu-devel-72.1-1.fc38.x86_64 184/275 Verifying : libjpeg-turbo-2.1.4-1.fc38.x86_64 185/275 Verifying : libmng-2.0.3-16.fc37.x86_64 186/275 Verifying : libmount-devel-2.38.1-3.fc38.x86_64 187/275 Verifying : libmpc-1.3.1-1.fc38.x86_64 188/275 Verifying : libnauty-2.8.6-1.fc38.x86_64 189/275 Verifying : libpciaccess-0.16-7.fc37.x86_64 190/275 Verifying : libpng-2:1.6.37-13.fc37.x86_64 191/275 Verifying : libpng-devel-2:1.6.37-13.fc37.x86_64 192/275 Verifying : libquadmath-13.0.1-0.1.fc38.x86_64 193/275 Verifying : libquadmath-devel-13.0.1-0.1.fc38.x86_64 194/275 Verifying : libselinux-devel-3.5-0.rc1.1.fc38.1.x86_64 195/275 Verifying : libsepol-devel-3.5-0.rc1.1.fc38.x86_64 196/275 Verifying : libstdc++-devel-13.0.1-0.1.fc38.x86_64 197/275 Verifying : libstdc++-static-13.0.1-0.1.fc38.x86_64 198/275 Verifying : libtiff-4.4.0-4.fc37.x86_64 199/275 Verifying : libtool-ltdl-2.4.7-5.fc38.x86_64 200/275 Verifying : libuv-1:1.44.2-2.fc37.x86_64 201/275 Verifying : libwacom-2.4.0-1.fc37.x86_64 202/275 Verifying : libwacom-data-2.4.0-1.fc37.noarch 203/275 Verifying : libwayland-client-1.21.0-1.fc37.x86_64 204/275 Verifying : libwayland-server-1.21.0-1.fc37.x86_64 205/275 Verifying : libwebp-1.3.0-1.fc38.x86_64 206/275 Verifying : libxcrypt-devel-4.4.33-5.fc38.x86_64 207/275 Verifying : libxkbcommon-1.5.0-1.fc38.x86_64 208/275 Verifying : libxkbcommon-x11-1.5.0-1.fc38.x86_64 209/275 Verifying : libxshmfence-1.3-11.fc37.x86_64 210/275 Verifying : lksctp-tools-1.0.19-2.fc37.x86_64 211/275 Verifying : lua-5.4.4-7.fc38.x86_64 212/275 Verifying : lua-filesystem-1.8.0-7.fc37.x86_64 213/275 Verifying : lua-json-1.3.4-2.fc37.noarch 214/275 Verifying : lua-lpeg-1.0.2-9.fc37.x86_64 215/275 Verifying : lua-posix-35.1-4.fc37.x86_64 216/275 Verifying : lua-term-0.07-16.fc37.x86_64 217/275 Verifying : make-1:4.4-1.fc38.x86_64 218/275 Verifying : mesa-libGLU-9.0.1-7.fc37.x86_64 219/275 Verifying : mesa-libGLU-devel-9.0.1-7.fc37.x86_64 220/275 Verifying : metis-5.1.0-33.fc37.x86_64 221/275 Verifying : mockito-3.12.4-5.fc38.noarch 222/275 Verifying : mpdecimal-2.5.1-4.fc37.x86_64 223/275 Verifying : mtdev-1.1.6-4.fc37.x86_64 224/275 Verifying : ncurses-c++-libs-6.4-2.20230114.fc38.x86_64 225/275 Verifying : ncurses-devel-6.4-2.20230114.fc38.x86_64 226/275 Verifying : nspr-4.35.0-3.fc38.x86_64 227/275 Verifying : nss-3.87.0-1.fc38.x86_64 228/275 Verifying : nss-softokn-3.87.0-1.fc38.x86_64 229/275 Verifying : nss-softokn-freebl-3.87.0-1.fc38.x86_64 230/275 Verifying : nss-sysinit-3.87.0-1.fc38.x86_64 231/275 Verifying : nss-util-3.87.0-1.fc38.x86_64 232/275 Verifying : objectweb-asm-9.3-4.fc38.noarch 233/275 Verifying : objenesis-3.3-1.fc38.noarch 234/275 Verifying : openblas-0.3.21-4.fc38.x86_64 235/275 Verifying : openblas-openmp-0.3.21-4.fc38.x86_64 236/275 Verifying : opentest4j-1.2.0-11.fc38.noarch 237/275 Verifying : pcre2-devel-10.42-1.fc38.x86_64 238/275 Verifying : pcre2-utf16-10.42-1.fc38.x86_64 239/275 Verifying : pcre2-utf32-10.42-1.fc38.x86_64 240/275 Verifying : pixman-0.40.0-6.fc37.x86_64 241/275 Verifying : procps-ng-3.3.17-8.fc38.x86_64 242/275 Verifying : python-rpm-macros-3.11-7.fc38.noarch 243/275 Verifying : python-setuptools-wheel-65.5.1-1.fc38.noarch 244/275 Verifying : python3-rpm-generators-14-1.fc38.noarch 245/275 Verifying : python3-rpm-macros-3.11-7.fc38.noarch 246/275 Verifying : qt-1:4.8.7-70.fc38.x86_64 247/275 Verifying : qt-common-1:4.8.7-70.fc38.noarch 248/275 Verifying : qt-devel-1:4.8.7-70.fc38.x86_64 249/275 Verifying : qt-settings-37.0-1.fc38.noarch 250/275 Verifying : qt-x11-1:4.8.7-70.fc38.x86_64 251/275 Verifying : qt5-qtbase-5.15.8-2.fc38.x86_64 252/275 Verifying : qt5-qtbase-common-5.15.8-2.fc38.noarch 253/275 Verifying : qt5-qtbase-gui-5.15.8-2.fc38.x86_64 254/275 Verifying : rhash-1.4.3-1.fc38.x86_64 255/275 Verifying : scala-2.13.10-1.fc38.noarch 256/275 Verifying : scala-library-2.13.10-1.fc38.noarch 257/275 Verifying : scala-reflect-2.13.10-1.fc38.noarch 258/275 Verifying : scotch-6.1.2-3.fc37.x86_64 259/275 Verifying : suitesparse-5.13.0-1.fc38.x86_64 260/275 Verifying : sysprof-capture-devel-3.46.0-1.fc38.x86_64 261/275 Verifying : tcl-1:8.6.12-3.fc38.x86_64 262/275 Verifying : tzdata-java-2022g-1.fc38.noarch 263/275 Verifying : unixODBC-2.3.11-1.fc38.x86_64 264/275 Verifying : vim-filesystem-2:9.0.1221-1.fc38.noarch 265/275 Verifying : xcb-util-0.4.1-1.fc38.x86_64 266/275 Verifying : xcb-util-image-0.4.1-1.fc38.x86_64 267/275 Verifying : xcb-util-keysyms-0.4.1-1.fc38.x86_64 268/275 Verifying : xcb-util-renderutil-0.3.10-1.fc38.x86_64 269/275 Verifying : xcb-util-wm-0.4.2-1.fc38.x86_64 270/275 Verifying : xkeyboard-config-2.36-3.fc38.noarch 271/275 Verifying : xml-common-0.6.3-59.fc37.noarch 272/275 Verifying : xorg-x11-proto-devel-2022.2-2.fc38.noarch 273/275 Verifying : xz-devel-5.2.9-1.fc38.x86_64 274/275 Verifying : zlib-devel-1.2.13-2.fc38.x86_64 275/275 Installed: Lmod-8.7.18-1.fc38.x86_64 MUMPS-5.5.1-1.fc38.x86_64 MUMPS-common-5.5.1-1.fc38.noarch alsa-lib-1.2.8-2.fc38.x86_64 annobin-docs-11.06-2.fc38.noarch annobin-plugin-gcc-11.06-2.fc38.x86_64 avahi-libs-0.8-19.fc38.x86_64 boost-1.78.0-11.fc38.x86_64 boost-atomic-1.78.0-11.fc38.x86_64 boost-chrono-1.78.0-11.fc38.x86_64 boost-container-1.78.0-11.fc38.x86_64 boost-context-1.78.0-11.fc38.x86_64 boost-contract-1.78.0-11.fc38.x86_64 boost-coroutine-1.78.0-11.fc38.x86_64 boost-date-time-1.78.0-11.fc38.x86_64 boost-devel-1.78.0-11.fc38.x86_64 boost-fiber-1.78.0-11.fc38.x86_64 boost-filesystem-1.78.0-11.fc38.x86_64 boost-graph-1.78.0-11.fc38.x86_64 boost-iostreams-1.78.0-11.fc38.x86_64 boost-json-1.78.0-11.fc38.x86_64 boost-locale-1.78.0-11.fc38.x86_64 boost-log-1.78.0-11.fc38.x86_64 boost-math-1.78.0-11.fc38.x86_64 boost-nowide-1.78.0-11.fc38.x86_64 boost-numpy3-1.78.0-11.fc38.x86_64 boost-program-options-1.78.0-11.fc38.x86_64 boost-python3-1.78.0-11.fc38.x86_64 boost-random-1.78.0-11.fc38.x86_64 boost-regex-1.78.0-11.fc38.x86_64 boost-serialization-1.78.0-11.fc38.x86_64 boost-stacktrace-1.78.0-11.fc38.x86_64 boost-system-1.78.0-11.fc38.x86_64 boost-test-1.78.0-11.fc38.x86_64 boost-thread-1.78.0-11.fc38.x86_64 boost-timer-1.78.0-11.fc38.x86_64 boost-type_erasure-1.78.0-11.fc38.x86_64 boost-wave-1.78.0-11.fc38.x86_64 brotli-1.0.9-11.fc38.x86_64 brotli-devel-1.0.9-11.fc38.x86_64 byte-buddy-1.12.10-2.fc38.noarch byte-buddy-agent-1.12.10-2.fc38.noarch bzip2-devel-1.0.8-12.fc37.x86_64 cairo-1.17.6-2.fc37.x86_64 cliquer-libs-1.22-4.fc37.x86_64 cmake-3.25.2-1.fc38.x86_64 cmake-data-3.25.2-1.fc38.noarch cmake-filesystem-3.25.2-1.fc38.x86_64 cmake-rpm-macros-3.25.2-1.fc38.noarch coin-or-Cbc-2.10.5-10.fc37.x86_64 coin-or-Cgl-0.60.3-8.fc38.x86_64 coin-or-Clp-1.17.6-11.fc38.x86_64 coin-or-CoinUtils-2.11.4-8.fc38.x86_64 coin-or-Osi-0.108.6-6.fc37.x86_64 coin-or-lemon-1.3.1-25.fc37.x86_64 coin-or-lemon-devel-1.3.1-25.fc37.x86_64 copy-jdk-configs-4.1-1.fc38.noarch cpp-13.0.1-0.1.fc38.x86_64 crypto-policies-scripts-20221215-2.gita4c31a3.fc38.noarch cups-libs-1:2.4.2-5.fc38.x86_64 dbus-libs-1:1.14.4-1.fc38.x86_64 emacs-filesystem-1:28.2-1.fc38.noarch expat-2.5.0-1.fc38.x86_64 flexiblas-3.3.0-1.fc38.x86_64 flexiblas-netlib-3.3.0-1.fc38.x86_64 flexiblas-openblas-openmp-3.3.0-1.fc38.x86_64 fontconfig-2.14.1-2.fc38.x86_64 fontconfig-devel-2.14.1-2.fc38.x86_64 fonts-filesystem-1:2.0.5-10.fc38.noarch freetype-2.12.1-3.fc37.x86_64 freetype-devel-2.12.1-3.fc37.x86_64 gc-8.2.2-1.fc38.x86_64 gcc-13.0.1-0.1.fc38.x86_64 gcc-c++-13.0.1-0.1.fc38.x86_64 gcc-plugin-annobin-13.0.1-0.1.fc38.x86_64 gecode-6.2.0-10.fc37.x86_64 gettext-0.21.1-1.fc38.x86_64 gettext-envsubst-0.21.1-1.fc38.x86_64 gettext-libs-0.21.1-1.fc38.x86_64 gettext-runtime-0.21.1-1.fc38.x86_64 gl-manpages-1.1-25.20190306.fc37.noarch glib2-2.74.1-3.fc38.x86_64 glib2-devel-2.74.1-3.fc38.x86_64 glibc-devel-2.36.9000-23.fc38.x86_64 glibc-headers-x86-2.36.9000-23.fc38.noarch glpk-5.0-5.fc37.x86_64 glx-utils-8.4.0-14.20210504git0f9e7d9.fc37.x86_64 gnutls-3.7.8-11.fc38.x86_64 google-noto-fonts-common-20201206^1.git0c78c8329-9.fc38.noarch google-noto-sans-vf-fonts-20201206^1.git0c78c8329-9.fc38.noarch graphite2-1.3.14-11.fc38.x86_64 graphite2-devel-1.3.14-11.fc38.x86_64 gsl-2.7.1-3.fc38.x86_64 guile22-2.2.7-6.fc37.x86_64 harfbuzz-6.0.0-2.fc38.x86_64 harfbuzz-devel-6.0.0-2.fc38.x86_64 harfbuzz-icu-6.0.0-2.fc38.x86_64 hwdata-0.366-1.fc38.noarch jacop-4.8-9.fc37.noarch java-17-openjdk-headless-1:17.0.6.0.9-0.2.ea.fc38.x86_64 java-diff-utils-4.12-1.fc37.noarch javapackages-filesystem-6.1.0-6.fc38.noarch javapackages-tools-6.1.0-6.fc38.noarch jbigkit-libs-2.1-24.fc37.x86_64 jline-builtins-3.22.0-1.fc38.noarch jline-reader-3.22.0-1.fc38.noarch jline-style-3.22.0-1.fc38.noarch jline-terminal-3.22.0-1.fc38.noarch jline-terminal-jna-3.22.0-1.fc38.noarch jna-5.13.0-1.fc38.x86_64 jsoncpp-1.9.5-4.fc38.x86_64 kernel-headers-6.2.0-0.rc4.git0.1.fc38.x86_64 langpacks-core-font-en-3.0-27.fc38.noarch lcms2-2.14-1.fc38.x86_64 libICE-1.0.10-9.fc37.x86_64 libICE-devel-1.0.10-9.fc37.x86_64 libSM-1.2.3-11.fc37.x86_64 libSM-devel-1.2.3-11.fc37.x86_64 libX11-1.8.3-2.fc38.x86_64 libX11-common-1.8.3-2.fc38.noarch libX11-devel-1.8.3-2.fc38.x86_64 libX11-xcb-1.8.3-2.fc38.x86_64 libXau-1.0.11-1.fc38.x86_64 libXau-devel-1.0.11-1.fc38.x86_64 libXcursor-1.2.1-2.fc37.x86_64 libXcursor-devel-1.2.1-2.fc37.x86_64 libXext-1.3.5-1.fc38.x86_64 libXext-devel-1.3.5-1.fc38.x86_64 libXfixes-6.0.0-4.fc37.x86_64 libXfixes-devel-6.0.0-4.fc37.x86_64 libXft-2.3.6-1.fc38.x86_64 libXft-devel-2.3.6-1.fc38.x86_64 libXi-1.8-3.fc37.x86_64 libXi-devel-1.8-3.fc37.x86_64 libXinerama-1.1.5-1.fc38.x86_64 libXinerama-devel-1.1.5-1.fc38.x86_64 libXrandr-1.5.2-9.fc37.x86_64 libXrandr-devel-1.5.2-9.fc37.x86_64 libXrender-0.9.11-1.fc38.x86_64 libXrender-devel-0.9.11-1.fc38.x86_64 libXt-1.2.1-3.fc37.x86_64 libXt-devel-1.2.1-3.fc37.x86_64 libXv-1.0.11-17.fc37.x86_64 libXv-devel-1.0.11-17.fc37.x86_64 libXxf86vm-1.1.5-1.fc38.x86_64 libb2-0.98.1-7.fc37.x86_64 libblkid-devel-2.38.1-3.fc38.x86_64 libdrm-2.4.114-1.fc38.x86_64 libedit-3.1-44.20221030cvs.fc38.x86_64 libedit-devel-3.1-44.20221030cvs.fc38.x86_64 libevdev-1.13.0-2.fc38.x86_64 libffi-devel-3.4.4-1.fc38.x86_64 libgfortran-13.0.1-0.1.fc38.x86_64 libglvnd-1:1.6.0-1.fc38.x86_64 libglvnd-core-devel-1:1.6.0-1.fc38.x86_64 libglvnd-devel-1:1.6.0-1.fc38.x86_64 libglvnd-egl-1:1.6.0-1.fc38.x86_64 libglvnd-gles-1:1.6.0-1.fc38.x86_64 libglvnd-glx-1:1.6.0-1.fc38.x86_64 libglvnd-opengl-1:1.6.0-1.fc38.x86_64 libgudev-237-3.fc37.x86_64 libicu-72.1-1.fc38.x86_64 libicu-devel-72.1-1.fc38.x86_64 libinput-1.22.1-2.fc38.x86_64 libjpeg-turbo-2.1.4-1.fc38.x86_64 libmng-2.0.3-16.fc37.x86_64 libmount-devel-2.38.1-3.fc38.x86_64 libmpc-1.3.1-1.fc38.x86_64 libnauty-2.8.6-1.fc38.x86_64 libpciaccess-0.16-7.fc37.x86_64 libpng-2:1.6.37-13.fc37.x86_64 libpng-devel-2:1.6.37-13.fc37.x86_64 libquadmath-13.0.1-0.1.fc38.x86_64 libquadmath-devel-13.0.1-0.1.fc38.x86_64 libselinux-devel-3.5-0.rc1.1.fc38.1.x86_64 libsepol-devel-3.5-0.rc1.1.fc38.x86_64 libstdc++-devel-13.0.1-0.1.fc38.x86_64 libstdc++-static-13.0.1-0.1.fc38.x86_64 libtiff-4.4.0-4.fc37.x86_64 libtool-ltdl-2.4.7-5.fc38.x86_64 libuv-1:1.44.2-2.fc37.x86_64 libwacom-2.4.0-1.fc37.x86_64 libwacom-data-2.4.0-1.fc37.noarch libwayland-client-1.21.0-1.fc37.x86_64 libwayland-server-1.21.0-1.fc37.x86_64 libwebp-1.3.0-1.fc38.x86_64 libxcb-1.13.1-11.fc38.x86_64 libxcb-devel-1.13.1-11.fc38.x86_64 libxcrypt-devel-4.4.33-5.fc38.x86_64 libxkbcommon-1.5.0-1.fc38.x86_64 libxkbcommon-x11-1.5.0-1.fc38.x86_64 libxml2-devel-2.10.3-3.fc38.x86_64 libxshmfence-1.3-11.fc37.x86_64 lksctp-tools-1.0.19-2.fc37.x86_64 llvm-15.0.7-2.fc38.x86_64 llvm-devel-15.0.7-2.fc38.x86_64 llvm-libs-15.0.7-2.fc38.x86_64 llvm-static-15.0.7-2.fc38.x86_64 llvm-test-15.0.7-2.fc38.x86_64 lua-5.4.4-7.fc38.x86_64 lua-filesystem-1.8.0-7.fc37.x86_64 lua-json-1.3.4-2.fc37.noarch lua-lpeg-1.0.2-9.fc37.x86_64 lua-posix-35.1-4.fc37.x86_64 lua-term-0.07-16.fc37.x86_64 make-1:4.4-1.fc38.x86_64 mesa-libEGL-22.3.3-2.fc38.x86_64 mesa-libGL-22.3.3-2.fc38.x86_64 mesa-libGLU-9.0.1-7.fc37.x86_64 mesa-libGLU-devel-9.0.1-7.fc37.x86_64 mesa-libgbm-22.3.3-2.fc38.x86_64 mesa-libglapi-22.3.3-2.fc38.x86_64 metis-5.1.0-33.fc37.x86_64 mockito-3.12.4-5.fc38.noarch mp-3.1.0-41.20200303git7fd4828.fc38.x86_64 mpdecimal-2.5.1-4.fc37.x86_64 mtdev-1.1.6-4.fc37.x86_64 ncurses-c++-libs-6.4-2.20230114.fc38.x86_64 ncurses-devel-6.4-2.20230114.fc38.x86_64 nspr-4.35.0-3.fc38.x86_64 nss-3.87.0-1.fc38.x86_64 nss-softokn-3.87.0-1.fc38.x86_64 nss-softokn-freebl-3.87.0-1.fc38.x86_64 nss-sysinit-3.87.0-1.fc38.x86_64 nss-util-3.87.0-1.fc38.x86_64 objectweb-asm-9.3-4.fc38.noarch objenesis-3.3-1.fc38.noarch openblas-0.3.21-4.fc38.x86_64 openblas-openmp-0.3.21-4.fc38.x86_64 opentest4j-1.2.0-11.fc38.noarch pcre2-devel-10.42-1.fc38.x86_64 pcre2-utf16-10.42-1.fc38.x86_64 pcre2-utf32-10.42-1.fc38.x86_64 pixman-0.40.0-6.fc37.x86_64 procps-ng-3.3.17-8.fc38.x86_64 pyproject-rpm-macros-1.5.1-2.fc38.noarch python-pip-wheel-22.3.1-2.fc38.noarch python-rpm-macros-3.11-7.fc38.noarch python-setuptools-wheel-65.5.1-1.fc38.noarch python3-3.11.1-3.fc38.x86_64 python3-devel-3.11.1-3.fc38.x86_64 python3-libs-3.11.1-3.fc38.x86_64 python3-numpy-1:1.23.5-2.fc38.x86_64 python3-packaging-23.0-1.fc38.noarch python3-rpm-generators-14-1.fc38.noarch python3-rpm-macros-3.11-7.fc38.noarch qt-1:4.8.7-70.fc38.x86_64 qt-common-1:4.8.7-70.fc38.noarch qt-devel-1:4.8.7-70.fc38.x86_64 qt-settings-37.0-1.fc38.noarch qt-x11-1:4.8.7-70.fc38.x86_64 qt5-qtbase-5.15.8-2.fc38.x86_64 qt5-qtbase-common-5.15.8-2.fc38.noarch qt5-qtbase-gui-5.15.8-2.fc38.x86_64 rhash-1.4.3-1.fc38.x86_64 scala-2.13.10-1.fc38.noarch scala-library-2.13.10-1.fc38.noarch scala-reflect-2.13.10-1.fc38.noarch scotch-6.1.2-3.fc37.x86_64 suitesparse-5.13.0-1.fc38.x86_64 sysprof-capture-devel-3.46.0-1.fc38.x86_64 tcl-1:8.6.12-3.fc38.x86_64 tzdata-java-2022g-1.fc38.noarch unixODBC-2.3.11-1.fc38.x86_64 vim-filesystem-2:9.0.1221-1.fc38.noarch xcb-util-0.4.1-1.fc38.x86_64 xcb-util-image-0.4.1-1.fc38.x86_64 xcb-util-keysyms-0.4.1-1.fc38.x86_64 xcb-util-renderutil-0.3.10-1.fc38.x86_64 xcb-util-wm-0.4.2-1.fc38.x86_64 xkeyboard-config-2.36-3.fc38.noarch xml-common-0.6.3-59.fc37.noarch xorg-x11-proto-devel-2022.2-2.fc38.noarch xz-devel-5.2.9-1.fc38.x86_64 zlib-devel-1.2.13-2.fc38.x86_64 Complete! Finish: build setup for seqan2-2.4.0-18.fc38.src.rpm Start: rpmbuild seqan2-2.4.0-18.fc38.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1658534400 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.09Hsml + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf seqan-seqan-v2.4.0 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/seqan-seqan-v2.4.0.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd seqan-seqan-v2.4.0 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/seqan-disable_stripping.patch + /usr/bin/patch -p0 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/seqan2-set_config_filepath.patch + /usr/bin/patch -p0 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/seqan2-set_awk_installation.patch + /usr/bin/patch -p0 -s --fuzz=0 --no-backup-if-mismatch -f + find . -perm /755 -type f '(' -name '*.cpp' -o -name '*.h' ')' -exec chmod -x '{}' ';' ++ ls apps/ ++ grep -v CMakeLists + for appID in `ls apps/ | grep -v CMakeLists` + cp -p apps/alf/LICENSE apps/alf/alf-LICENSE + for appID in `ls apps/ | grep -v CMakeLists` + cp -p apps/bs_tools/LICENSE apps/bs_tools/bs_tools-LICENSE + for appID in `ls apps/ | grep -v CMakeLists` + cp -p apps/dfi/LICENSE apps/dfi/dfi-LICENSE + for appID in `ls apps/ | grep -v CMakeLists` + cp -p apps/fiona/LICENSE apps/fiona/fiona-LICENSE + for appID in `ls apps/ | grep -v CMakeLists` + cp -p apps/fx_tools/LICENSE apps/fx_tools/fx_tools-LICENSE + for appID in `ls apps/ | grep -v CMakeLists` + cp -p apps/gustaf/LICENSE apps/gustaf/gustaf-LICENSE + for appID in `ls apps/ | grep -v CMakeLists` + cp -p apps/insegt/LICENSE apps/insegt/insegt-LICENSE + for appID in `ls apps/ | grep -v CMakeLists` + cp -p apps/mason2/LICENSE apps/mason2/mason2-LICENSE + for appID in `ls apps/ | grep -v CMakeLists` + cp -p apps/micro_razers/LICENSE apps/micro_razers/micro_razers-LICENSE + for appID in `ls apps/ | grep -v CMakeLists` + cp -p apps/ngs_roi/LICENSE apps/ngs_roi/ngs_roi-LICENSE + for appID in `ls apps/ | grep -v CMakeLists` + cp -p apps/pair_align/LICENSE apps/pair_align/pair_align-LICENSE + for appID in `ls apps/ | grep -v CMakeLists` + cp -p apps/param_chooser/LICENSE apps/param_chooser/param_chooser-LICENSE + for appID in `ls apps/ | grep -v CMakeLists` + cp -p apps/rabema/LICENSE apps/rabema/rabema-LICENSE + for appID in `ls apps/ | grep -v CMakeLists` + cp -p apps/razers/LICENSE apps/razers/razers-LICENSE + for appID in `ls apps/ | grep -v CMakeLists` + cp -p apps/razers3/LICENSE apps/razers3/razers3-LICENSE + for appID in `ls apps/ | grep -v CMakeLists` + cp -p apps/rep_sep/LICENSE apps/rep_sep/rep_sep-LICENSE + for appID in `ls apps/ | grep -v CMakeLists` + cp -p apps/sak/LICENSE apps/sak/sak-LICENSE + for appID in `ls apps/ | grep -v CMakeLists` + cp -p apps/sam2matrix/LICENSE apps/sam2matrix/sam2matrix-LICENSE + for appID in `ls apps/ | grep -v CMakeLists` + cp -p apps/samcat/LICENSE apps/samcat/samcat-LICENSE + for appID in `ls apps/ | grep -v CMakeLists` + cp -p apps/searchjoin/LICENSE apps/searchjoin/searchjoin-LICENSE + for appID in `ls apps/ | grep -v CMakeLists` + cp -p apps/seqan_tcoffee/LICENSE apps/seqan_tcoffee/seqan_tcoffee-LICENSE + for appID in `ls apps/ | grep -v CMakeLists` + cp -p apps/seqcons2/LICENSE apps/seqcons2/seqcons2-LICENSE + for appID in `ls apps/ | grep -v CMakeLists` + cp -p apps/sgip/LICENSE apps/sgip/sgip-LICENSE + for appID in `ls apps/ | grep -v CMakeLists` + cp -p apps/snp_store/LICENSE apps/snp_store/snp_store-LICENSE + for appID in `ls apps/ | grep -v CMakeLists` + cp -p apps/splazers/LICENSE apps/splazers/splazers-LICENSE + for appID in `ls apps/ | grep -v CMakeLists` + cp -p apps/stellar/LICENSE apps/stellar/stellar-LICENSE + for appID in `ls apps/ | grep -v CMakeLists` + cp -p apps/tree_recon/LICENSE apps/tree_recon/tree_recon-LICENSE + for appID in `ls apps/ | grep -v CMakeLists` + cp -p apps/yara/LICENSE apps/yara/yara-LICENSE + cp -p apps/rabema/COPYING apps/rabema/rabema-COPYING + rm -rf util/py_lib/seqan/dox/tpl/lib/font-awesome/css util/py_lib/seqan/dox/tpl/lib/font-awesome/fonts util/py_lib/seqan/dox/tpl/lib/font-awesome/less util/py_lib/seqan/dox/tpl/lib/font-awesome/scss + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.JbkbHU + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd seqan-seqan-v2.4.0 + mkdir -p build/library + pushd build/library ~/build/BUILD/seqan-seqan-v2.4.0/build/library ~/build/BUILD/seqan-seqan-v2.4.0 + SEQAN_OPT_FLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON '-DCMAKE_CXX_FLAGS_RELEASE:STRING=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG' -DCMAKE_INSTALL_PREFIX:PATH=/usr -DCMAKE_INSTALL_DOCDIR:STRING=share/doc/seqan2 -DCMAKE_INSTALL_INCLUDEDIR:PATH=include/seqan2 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DBUILD_SHARED_LIBS:BOOL=OFF -DCMAKE_SKIP_RPATH:BOOL=YES -DCMAKE_SKIP_INSTALL_RPATH:BOOL=YES -DCMAKE_VERBOSE_MAKEFILE:BOOL=TRUE -DSEQAN_BUILD_SYSTEM:STRING=SEQAN_RELEASE_LIBRARY -DSEQAN_DISABLE_VERSION_CHECK:BOOL=ON -DZLIB_INCLUDE_DIR:PATH=/usr/include -DZLIB_LIBRARY:FILEPATH=/usr/lib64/libz.so -DBZIP2_INCLUDE_DIR:PATH=/usr/include -DBZIP2_LIBRARY:FILEPATH=/usr/lib64/libbz2.so -DLEMON_INCLUDE_DIR:PATH=/usr/include -DLEMON_LIBRARY:FILEPATH=/usr/lib64/libemon.so -DBoost_INCLUDE_DIR:PATH=/usr/include -DPYTHON_EXECUTABLE:FILEPATH=/usr/bin/python3 -DSPHINX_EXECUTABLE:FILEPATH=/usr/bin/sphinx-build -DSPHINX_MAN_OUTPUT:BOOL=ON -DSPHINX_TEXT_OUTPUT:BOOL=ON -DYARA_LARGE_CONTIGS:BOOL=OFF ../.. -- The CXX compiler identification is GNU 13.0.1 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Initializing SeqAn Build System... -- Selected repository dir: /builddir/build/BUILD/seqan-seqan-v2.4.0 -- No revision system found. -- Repository date not determined. -- Repository revision not determined. -- Configuring dox -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.11.1", minimum required is "2.7") -- You need Python 2.x for building dox. (skip the tests) -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: BUILD_SHARED_LIBS BZIP2_INCLUDE_DIR BZIP2_LIBRARY Boost_INCLUDE_DIR CMAKE_CXX_FLAGS_RELEASE CMAKE_C_FLAGS_RELEASE CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP CMAKE_SKIP_INSTALL_RPATH CMAKE_SKIP_RPATH INCLUDE_INSTALL_DIR LEMON_INCLUDE_DIR LEMON_LIBRARY LIB_INSTALL_DIR LIB_SUFFIX SPHINX_EXECUTABLE SPHINX_MAN_OUTPUT SPHINX_TEXT_OUTPUT YARA_LARGE_CONTIGS ZLIB_INCLUDE_DIR ZLIB_LIBRARY -- Build files have been written to: /builddir/build/BUILD/seqan-seqan-v2.4.0/build/library + /usr/bin/make -O -j2 V=1 VERBOSE=1 /usr/bin/cmake -S/builddir/build/BUILD/seqan-seqan-v2.4.0 -B/builddir/build/BUILD/seqan-seqan-v2.4.0/build/library --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/seqan-seqan-v2.4.0/build/library/CMakeFiles /builddir/build/BUILD/seqan-seqan-v2.4.0/build/library//CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Nothing to be done for 'all'. /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/seqan-seqan-v2.4.0/build/library/CMakeFiles 0 ~/build/BUILD/seqan-seqan-v2.4.0 + popd + mkdir -p build/Release + pushd build/Release ~/build/BUILD/seqan-seqan-v2.4.0/build/Release ~/build/BUILD/seqan-seqan-v2.4.0 + SEQAN_OPT_FLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON '-DCMAKE_CXX_FLAGS_RELEASE:STRING=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG' -DCMAKE_INSTALL_PREFIX:PATH=/usr -DCMAKE_INSTALL_DOCDIR:STRING=share/doc/seqan2 -DCMAKE_INSTALL_INCLUDEDIR:PATH=include/seqan2 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DBUILD_SHARED_LIBS:BOOL=OFF -DCMAKE_SKIP_RPATH:BOOL=YES -DCMAKE_SKIP_INSTALL_RPATH:BOOL=YES -DCMAKE_VERBOSE_MAKEFILE:BOOL=TRUE -DSEQAN_BUILD_SYSTEM:STRING=SEQAN_RELEASE_APPS -DSEQAN_DISABLE_VERSION_CHECK:BOOL=ON -DZLIB_INCLUDE_DIR:PATH=/usr/include -DZLIB_LIBRARY:FILEPATH=/usr/lib64/libz.so -DBZIP2_INCLUDE_DIR:PATH=/usr/include -DBZIP2_LIBRARY:FILEPATH=/usr/lib64/libbz2.so -DLEMON_INCLUDE_DIR:PATH=/usr/include -DLEMON_LIBRARY:FILEPATH=/usr/lib64/libemon.so -DBoost_INCLUDE_DIR:PATH=/usr/include -DPYTHON_EXECUTABLE:FILEPATH=/usr/bin/python3 -DYARA_LARGE_CONTIGS:BOOL=OFF -DSPHINX_EXECUTABLE:FILEPATH=/usr/bin/sphinx-build -DSPHINX_MAN_OUTPUT:BOOL=ON -DSPHINX_TEXT_OUTPUT:BOOL=ON ../.. -- The CXX compiler identification is GNU 13.0.1 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Initializing SeqAn Build System... -- Selected repository dir: /builddir/build/BUILD/seqan-seqan-v2.4.0 -- No revision system found. -- Repository date not determined. -- Repository revision not determined. -- Configuring apps -- Configuring apps/alf -- Performing Test CXX14_BUILTIN -- Performing Test CXX14_BUILTIN - Success -- Looking for C++ include execinfo.h -- Looking for C++ include execinfo.h - found -- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0") -- Configuring apps/bs_tools -- Found ZLIB: /usr/lib64/libz.so (found version "1.2.13") -- Found Boost: /usr/lib64/cmake/Boost-1.78.0/BoostConfig.cmake (found version "1.78.0") -- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0") -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.11.1", minimum required is "2.7") -- Configuring apps/dfi -- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0") -- Configuring apps/fiona -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0") -- Configuring apps/fx_tools -- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0") -- Configuring apps/gustaf -- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0") -- Configuring apps/insegt -- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0") -- Configuring apps/mason2 -- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0") -- Configuring apps/micro_razers -- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0") -- Configuring apps/ngs_roi -- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0") -- Configuring apps/pair_align -- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0") -- Configuring apps/param_chooser -- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0") -- Configuring apps/rabema -- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0") -- Configuring apps/razers -- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0") -- Configuring apps/razers3 -- Found BZip2: /usr/lib64/libbz2.so (found version "1.0.8") -- Looking for BZ2_bzCompressInit -- Looking for BZ2_bzCompressInit - found -- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0") -- Configuring apps/rep_sep -- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0") -- Configuring apps/sak -- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0") -- Configuring apps/sam2matrix -- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0") -- Configuring apps/samcat -- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0") -- Configuring apps/searchjoin -- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0") -- Configuring apps/seqan_tcoffee -- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0") -- Configuring apps/seqcons2 -- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0") -- Configuring apps/sgip -- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0") -- Configuring apps/snp_store -- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0") -- Configuring apps/splazers -- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0") -- Configuring apps/stellar -- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0") -- Configuring apps/tree_recon -- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0") -- Configuring apps/yara -- Found Seqan: /builddir/build/BUILD/seqan-seqan-v2.4.0/include (found version "2.4.0") -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_C_FLAGS_RELEASE CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP CMAKE_SKIP_INSTALL_RPATH INCLUDE_INSTALL_DIR LEMON_INCLUDE_DIR LEMON_LIBRARY LIB_INSTALL_DIR LIB_SUFFIX SPHINX_EXECUTABLE SPHINX_MAN_OUTPUT SPHINX_TEXT_OUTPUT -- Build files have been written to: /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release + make -O -j1 /usr/bin/cmake -S/builddir/build/BUILD/seqan-seqan-v2.4.0 -B/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/CMakeFiles /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f CMakeFiles/seqan_library.dir/build.make CMakeFiles/seqan_library.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/CMakeFiles/seqan_library.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f CMakeFiles/seqan_library.dir/build.make CMakeFiles/seqan_library.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'CMakeFiles/seqan_library.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 0%] Built target seqan_library make -f apps/alf/CMakeFiles/alf.dir/build.make apps/alf/CMakeFiles/alf.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/alf /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/alf /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/alf/CMakeFiles/alf.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/alf/CMakeFiles/alf.dir/build.make apps/alf/CMakeFiles/alf.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 0%] Building CXX object apps/alf/CMakeFiles/alf.dir/alf.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/alf && /usr/bin/g++ -DSEQAN_APP_VERSION=\"1.1.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/alf/CMakeFiles/alf.dir/alf.cpp.o -MF CMakeFiles/alf.dir/alf.cpp.o.d -o CMakeFiles/alf.dir/alf.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/alf/alf.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:45, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/alf/alf.cpp:46: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/alf/alf.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:50, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/bam_sam.h:39, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:55: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:42, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/statistics.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/alignment_free.h:47, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/alf/alf.cpp:49: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:47: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:76: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:91: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:102: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:107: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:110: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:111: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:114: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:121: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:125: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:131: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:188: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/alignment_free.h:59: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/alignment_free/af_n2.h: In instantiation of 'void seqan::_alignmentFreeComparison(Matrix&, const TStringSet&, const AFScore >&) [with TValue = double; TStringSet = StringSet, Alloc<> > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/alignment_free/alignment_free_comparison.h:101:29: required from 'void seqan::alignmentFreeComparison(Matrix&, const TStringSet&, const TComparisonMethod&) [with TStringSet = StringSet, Alloc<> > >; TValue = double; TComparisonMethod = AFScore >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/alf/alf.cpp:188:32: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/alignment_free/af_n2.h:189:34: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 189 | itStandardisedKmerCounts = begin(standardisedKmerCounts); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_iterator.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:86, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/alf/alf.cpp:44: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::StringSet >]' 105 | Iter(Iter const & other_) : | ^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/alf/alf.cpp:164:13: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/alf/alf.cpp:45: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/alf/alf.cpp:164:13: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/alf/alf.cpp:164:13: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/alf/alf.cpp:164:13: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/alf/alf.cpp:164:13: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/alf/alf.cpp:164:13: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/alf/alf.cpp:164:13: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ [ 0%] Linking CXX executable ../../bin/alf cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/alf && /usr/bin/cmake -E cmake_link_script CMakeFiles/alf.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/alf.dir/alf.cpp.o -o ../../bin/alf -lrt In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from '_toText' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function '_toText': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 0%] Built target alf make -f apps/bs_tools/CMakeFiles/bisar.dir/build.make apps/bs_tools/CMakeFiles/bisar.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/bs_tools /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/bs_tools/CMakeFiles/bisar.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/bs_tools/CMakeFiles/bisar.dir/build.make apps/bs_tools/CMakeFiles/bisar.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 0%] Building CXX object apps/bs_tools/CMakeFiles/bisar.dir/bisar.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/bs_tools && /usr/bin/g++ -DSEQAN_APP_VERSION=\"0.1.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/bs_tools/CMakeFiles/bisar.dir/bisar.cpp.o -MF CMakeFiles/bisar.dir/bisar.cpp.o.d -o CMakeFiles/bisar.dir/bisar.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/bisar.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse.h:46, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/bisar.cpp:39: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/debug_test_system.h:150, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/bisar.cpp:37: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/bisar.cpp:41: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:41: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/bisar.cpp:46: /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/bisar_score.h:28:57: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 28 | struct FunctorDna5OrdValueComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/bisar.cpp:38: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:90: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; typename Reference > > >::Type = Proxy, Alloc<> >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, AnchorGaps, Alloc<> > > >; TSpec = GapsIterator, Alloc<> > > >; typename Reference >::Type = Proxy, Alloc<> >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/bisar.h:157:26: required from 'int reAlign4(TReadGaps&, TContigGaps&, TFragmentStore&, TId&, TBsScoreCTLeft&, TBsScoreCTRight&, TBsScoreGALeft&, TBsScoreGARight&, TOptions&) [with TReadGaps = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TContigGaps = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TFragmentStore = seqan::FragmentStore; TId = unsigned int; TBsScoreCTLeft = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TBsScoreCTRight = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TBsScoreGALeft = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TBsScoreGARight = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TOptions = AppOptions]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/bisar.h:1168:17: required from 'bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/bisar.cpp:294:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:205:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 205 | return TProxy(it); | ^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_iterator.h:87, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:86: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]' 88 | Proxy(TIterator const _it) | ~~~~~~~~~~~~~~~~^~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:205:12: required from 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; typename Reference > > >::Type = Proxy, Alloc<> >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, AnchorGaps, Alloc<> > > >; TSpec = GapsIterator, Alloc<> > > >; typename Reference >::Type = Proxy, Alloc<> >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/bisar.h:157:26: required from 'int reAlign4(TReadGaps&, TContigGaps&, TFragmentStore&, TId&, TBsScoreCTLeft&, TBsScoreCTRight&, TBsScoreGALeft&, TBsScoreGARight&, TOptions&) [with TReadGaps = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TContigGaps = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TFragmentStore = seqan::FragmentStore; TId = unsigned int; TBsScoreCTLeft = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TBsScoreCTRight = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TBsScoreGALeft = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TBsScoreGARight = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TOptions = AppOptions]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/bisar.h:1168:17: required from 'bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/bisar.cpp:294:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:89:15: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 89 | : data_iterator(_it) | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/bisar_base.h:21:14: required from 'bool loadReadsCroppedId(seqan::FragmentStore&, TFileName&) [with TFSSpec = seqan::MyFragmentStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TFileName = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/bisar.h:996:27: required from 'bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/bisar.cpp:294:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/bisar_base.h:21:14: required from 'bool loadReadsCroppedId(seqan::FragmentStore&, TFileName&) [with TFSSpec = seqan::MyFragmentStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TFileName = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/bisar.h:996:27: required from 'bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/bisar.cpp:294:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/bisar_base.h:21:14: required from 'bool loadReadsCroppedId(seqan::FragmentStore&, TFileName&) [with TFSSpec = seqan::MyFragmentStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TFileName = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/bisar.h:996:27: required from 'bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/bisar.cpp:294:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/bisar_base.h:21:14: required from 'bool loadReadsCroppedId(seqan::FragmentStore&, TFileName&) [with TFSSpec = seqan::MyFragmentStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TFileName = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/bisar.h:996:27: required from 'bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/bisar.cpp:294:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/bisar_base.h:21:14: required from 'bool loadReadsCroppedId(seqan::FragmentStore&, TFileName&) [with TFSSpec = seqan::MyFragmentStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TFileName = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/bisar.h:996:27: required from 'bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/bisar.cpp:294:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned short': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned short const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned int': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)int', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int &' to 'seqan::BadLexicalCast::BadLexicalCast(int const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)unsigned int', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast(unsigned int const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)short', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, char*>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int &' to 'seqan::BadLexicalCast::BadLexicalCast(short const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)unsigned short', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, char*>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast(unsigned short const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, char*>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char &' to 'seqan::BadLexicalCast::BadLexicalCast(char const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)unsigned char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, unsigned char, seqan::TagList >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, char*>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char &' to 'seqan::BadLexicalCast::BadLexicalCast(unsigned char const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)signed char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(signed char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(signed char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, signed char>(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'seqan::tagApply >, char*>, unsigned char, seqan::TagList >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char &' to 'seqan::BadLexicalCast::BadLexicalCast(signed char const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)int', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, seqan::String >&>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)short', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, seqan::String >&>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, seqan::String >&>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(short const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, seqan::String >&>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char &' to 'seqan::BadLexicalCast::BadLexicalCast > >(char const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(unsigned char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(unsigned char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned char, seqan::TagList >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, seqan::String >&>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned char const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)signed char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(signed char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(signed char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, seqan::String >&>, signed char>(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned char, seqan::TagList >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char &' to 'seqan::BadLexicalCast::BadLexicalCast > >(signed char const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned short', inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:277:40, inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent >, seqan::TagList, void> >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::TagSelector, void> > const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:231:19, inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent >, seqan::TagList, seqan::TagList, void> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::TagSelector, seqan::TagList, void> > > const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:233:19: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent >, seqan::TagList, seqan::TagList, void> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::TagSelector, seqan::TagList, void> > > const&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned short const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned short', inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:306:44, inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent >, seqan::TagList, void> >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::TagSelector, void> > const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:231:19, inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent >, seqan::TagList, seqan::TagList, void> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::TagSelector, seqan::TagList, void> > > const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:233:19: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent >, seqan::TagList, seqan::TagList, void> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::TagSelector, seqan::TagList, void> > > const&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned short const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned int', inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:320:50, inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent >, seqan::TagList, void> >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::TagSelector, void> > const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:231:19, inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent >, seqan::TagList, seqan::TagList, void> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::TagSelector, seqan::TagList, void> > > const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:233:19: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent >, seqan::TagList, seqan::TagList, void> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::TagSelector, seqan::TagList, void> > > const&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)int', inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:363:43, inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent >, seqan::TagList, void> >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::TagSelector, void> > const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:231:19, inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent >, seqan::TagList, seqan::TagList, void> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::TagSelector, seqan::TagList, void> > > const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:233:19: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent >, seqan::TagList, seqan::TagList, void> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::TagSelector, seqan::TagList, void> > > const&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ [ 1%] Linking CXX executable ../../bin/bisar cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/bs_tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/bisar.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/bisar.dir/bisar.cpp.o -o ../../bin/bisar -lrt -lz In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from '_toText' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function '_toText': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 1%] Built target bisar make -f apps/bs_tools/CMakeFiles/casbar.dir/build.make apps/bs_tools/CMakeFiles/casbar.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/bs_tools /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/bs_tools/CMakeFiles/casbar.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/bs_tools/CMakeFiles/casbar.dir/build.make apps/bs_tools/CMakeFiles/casbar.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 1%] Building CXX object apps/bs_tools/CMakeFiles/casbar.dir/casbar.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/bs_tools && /usr/bin/g++ -DSEQAN_APP_VERSION=\"0.1.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/bs_tools/CMakeFiles/casbar.dir/casbar.cpp.o -MF CMakeFiles/casbar.dir/casbar.cpp.o.d -o CMakeFiles/casbar.dir/casbar.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.cpp:42: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_tree.h:65, from /usr/include/c++/13/map:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:58, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.cpp:41: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.cpp:43: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.cpp:44: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_msa.h:44, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.cpp:45: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_msa/graph_align_tcoffee_base.h:304:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 304 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus.h:59: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_library.h:88:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 88 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_library.h:99:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::unary_function >, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:42, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/overlap_info_computation.h:38, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus.h:65: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:47: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:76: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:91: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:102: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:107: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:110: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:111: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:114: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:121: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:125: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:131: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:188: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar_realignment.h:6, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.cpp:73: /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar_score.h:42:57: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 42 | struct FunctorDna5OrdValueComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar_realignment.h:17:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 17 | public ::std::binary_function < typename Value::Type, typename Value::Type, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar_realignment.h:66:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 66 | struct LessPosLen : public ::std::binary_function < TPosLen, TPosLen, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar_realignment.h:81:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 81 | public ::std::binary_function < typename Value::Type, typename Value::Type, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar_realignment.h:129:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 129 | struct LessId : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar_realignment.h:142:37: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 142 | struct LessGPos : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar_realignment.h:165:40: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 165 | struct LessGPosEnd : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar_realignment.h:184:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 184 | struct LessGPosEndOa : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar_realignment.h:206:36: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 206 | struct HigherQ : public ::std::binary_function < TQual, TQual, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score.h:43, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:45: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Vcf_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.cpp:873:31: required from 'int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.cpp:1265:28: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bed_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.cpp:899:31: required from 'int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.cpp:1265:28: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:90: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps, Alloc<> >, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; TDifference = long unsigned int]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:1618:57: required from 'void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream; TContigGaps = Gaps, Alloc<> >, AnchorGaps, Alloc<> > > >; TReadGaps = Gaps >, AnchorGaps, Alloc<> > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream; TSpec = SnpStoreSpec_; TConfig = FragmentStoreConfig; TContigId = int; TPos = long int; TNum = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.h:1163:31: required from 'void doCheckRealignCall(TFragmentStore&, TContigPos, TContigPos, TContigPos, TSetContigAnchorGaps&, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TContigPos = long int; TSetContigAnchorGaps = seqan::String, seqan::Alloc<> >, seqan::Alloc<> >; TVcfStream = seqan::FormattedFile, seqan::Tag >; TBedStream = seqan::FormattedFile, seqan::Tag >; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.cpp:742:35: required from 'bool detectSNPsForContig(seqan::VcfFileOut&, seqan::BedFileOut&, seqan::FragmentStore&, TContigId&, TBamFileIns&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TSpec = seqan::SnpStoreSpec_; TContigId = int; TBamFileIns = std::vector, seqan::Tag >*>; TRecords = std::vector; TContigIntervals = seqan::String > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions; seqan::VcfFileOut = seqan::FormattedFile, seqan::Tag >; seqan::BedFileOut = seqan::FormattedFile, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.cpp:901:32: required from 'int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.cpp:1265:28: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 773 | Iter > > result = lhs; | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 775 | return result; | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps, Alloc<> >, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; TDifference = long int]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:679:35: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, const Tag&) [with T = Gaps, Alloc<> >, AnchorGaps, Alloc<> > > >; TPos = long int; TTag = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:661:16: required from 'typename seqan::Iterator::Type>::Type seqan::iter(T&, TPos) [with T = Gaps, Alloc<> >, AnchorGaps, Alloc<> > > >; TPos = long int; typename Iterator::Type>::Type = Iter, Alloc<> >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.h:1355:36: required from 'void doSnpAndMethCalling(TFragmentStore&, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, bool, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TVcfStream = seqan::FormattedFile, seqan::Tag >; TBedStream = seqan::FormattedFile, seqan::Tag >; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; typename TFragmentStore::TContigPos = long int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.cpp:755:36: required from 'bool detectSNPsForContig(seqan::VcfFileOut&, seqan::BedFileOut&, seqan::FragmentStore&, TContigId&, TBamFileIns&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TSpec = seqan::SnpStoreSpec_; TContigId = int; TBamFileIns = std::vector, seqan::Tag >*>; TRecords = std::vector; TContigIntervals = seqan::String > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions; seqan::VcfFileOut = seqan::FormattedFile, seqan::Tag >; seqan::BedFileOut = seqan::FormattedFile, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.cpp:901:32: required from 'int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.cpp:1265:28: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 773 | Iter > > result = lhs; | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 775 | return result; | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io.h:996:18: required from 'bool seqan::loadContigs(FragmentStore&, const StringSet > >&, bool) [with TFSSpec = SnpStoreSpec_; TFSConfig = FragmentStoreConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io.h:1043:23: required from 'bool seqan::loadContigs(FragmentStore&, const TFileNames&) [with TFSSpec = SnpStoreSpec_; TFSConfig = FragmentStoreConfig; TFileNames = StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.cpp:792:16: required from 'int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.cpp:1265:28: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; typename Reference > > >::Type = Proxy, Alloc<> >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, AnchorGaps, Alloc<> > > >; TSpec = GapsIterator, Alloc<> > > >; typename Reference >::Type = Proxy, Alloc<> >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:1628:32: required from 'void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream; TContigGaps = Gaps, Alloc<> >, AnchorGaps, Alloc<> > > >; TReadGaps = Gaps >, AnchorGaps, Alloc<> > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream; TSpec = SnpStoreSpec_; TConfig = FragmentStoreConfig; TContigId = int; TPos = long int; TNum = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.h:1163:31: required from 'void doCheckRealignCall(TFragmentStore&, TContigPos, TContigPos, TContigPos, TSetContigAnchorGaps&, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TContigPos = long int; TSetContigAnchorGaps = seqan::String, seqan::Alloc<> >, seqan::Alloc<> >; TVcfStream = seqan::FormattedFile, seqan::Tag >; TBedStream = seqan::FormattedFile, seqan::Tag >; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.cpp:742:35: required from 'bool detectSNPsForContig(seqan::VcfFileOut&, seqan::BedFileOut&, seqan::FragmentStore&, TContigId&, TBamFileIns&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TSpec = seqan::SnpStoreSpec_; TContigId = int; TBamFileIns = std::vector, seqan::Tag >*>; TRecords = std::vector; TContigIntervals = seqan::String > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions; seqan::VcfFileOut = seqan::FormattedFile, seqan::Tag >; seqan::BedFileOut = seqan::FormattedFile, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.cpp:901:32: required from 'int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.cpp:1265:28: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:205:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 205 | return TProxy(it); | ^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_iterator.h:87, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:86, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:74: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]' 88 | Proxy(TIterator const _it) | ~~~~~~~~~~~~~~~~^~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps >, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; typename Reference > > >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps >, AnchorGaps, Alloc<> > > >; TSpec = GapsIterator, Alloc<> > > >; typename Reference >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:1628:55: required from 'void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream; TContigGaps = Gaps, Alloc<> >, AnchorGaps, Alloc<> > > >; TReadGaps = Gaps >, AnchorGaps, Alloc<> > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream; TSpec = SnpStoreSpec_; TConfig = FragmentStoreConfig; TContigId = int; TPos = long int; TNum = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.h:1163:31: required from 'void doCheckRealignCall(TFragmentStore&, TContigPos, TContigPos, TContigPos, TSetContigAnchorGaps&, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TContigPos = long int; TSetContigAnchorGaps = seqan::String, seqan::Alloc<> >, seqan::Alloc<> >; TVcfStream = seqan::FormattedFile, seqan::Tag >; TBedStream = seqan::FormattedFile, seqan::Tag >; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.cpp:742:35: required from 'bool detectSNPsForContig(seqan::VcfFileOut&, seqan::BedFileOut&, seqan::FragmentStore&, TContigId&, TBamFileIns&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TSpec = seqan::SnpStoreSpec_; TContigId = int; TBamFileIns = std::vector, seqan::Tag >*>; TRecords = std::vector; TContigIntervals = seqan::String > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions; seqan::VcfFileOut = seqan::FormattedFile, seqan::Tag >; seqan::BedFileOut = seqan::FormattedFile, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.cpp:901:32: required from 'int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.cpp:1265:28: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:205:12: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 205 | return TProxy(it); | ^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]' 88 | Proxy(TIterator const _it) | ~~~~~~~~~~~~~~~~^~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io.h:996:18: required from 'bool seqan::loadContigs(FragmentStore&, const StringSet > >&, bool) [with TFSSpec = SnpStoreSpec_; TFSConfig = FragmentStoreConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io.h:1043:23: required from 'bool seqan::loadContigs(FragmentStore&, const TFileNames&) [with TFSSpec = SnpStoreSpec_; TFSConfig = FragmentStoreConfig; TFileNames = StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.cpp:792:16: required from 'int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.cpp:1265:28: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:205:12: required from 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; typename Reference > > >::Type = Proxy, Alloc<> >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, AnchorGaps, Alloc<> > > >; TSpec = GapsIterator, Alloc<> > > >; typename Reference >::Type = Proxy, Alloc<> >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:1628:32: required from 'void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream; TContigGaps = Gaps, Alloc<> >, AnchorGaps, Alloc<> > > >; TReadGaps = Gaps >, AnchorGaps, Alloc<> > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream; TSpec = SnpStoreSpec_; TConfig = FragmentStoreConfig; TContigId = int; TPos = long int; TNum = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.h:1163:31: required from 'void doCheckRealignCall(TFragmentStore&, TContigPos, TContigPos, TContigPos, TSetContigAnchorGaps&, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TContigPos = long int; TSetContigAnchorGaps = seqan::String, seqan::Alloc<> >, seqan::Alloc<> >; TVcfStream = seqan::FormattedFile, seqan::Tag >; TBedStream = seqan::FormattedFile, seqan::Tag >; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.cpp:742:35: required from 'bool detectSNPsForContig(seqan::VcfFileOut&, seqan::BedFileOut&, seqan::FragmentStore&, TContigId&, TBamFileIns&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TSpec = seqan::SnpStoreSpec_; TContigId = int; TBamFileIns = std::vector, seqan::Tag >*>; TRecords = std::vector; TContigIntervals = seqan::String > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions; seqan::VcfFileOut = seqan::FormattedFile, seqan::Tag >; seqan::BedFileOut = seqan::FormattedFile, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.cpp:901:32: required from 'int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.cpp:1265:28: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:89:15: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 89 | : data_iterator(_it) | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:205:12: required from 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps >, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; typename Reference > > >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps >, AnchorGaps, Alloc<> > > >; TSpec = GapsIterator, Alloc<> > > >; typename Reference >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:1628:55: required from 'void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream; TContigGaps = Gaps, Alloc<> >, AnchorGaps, Alloc<> > > >; TReadGaps = Gaps >, AnchorGaps, Alloc<> > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream; TSpec = SnpStoreSpec_; TConfig = FragmentStoreConfig; TContigId = int; TPos = long int; TNum = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.h:1163:31: required from 'void doCheckRealignCall(TFragmentStore&, TContigPos, TContigPos, TContigPos, TSetContigAnchorGaps&, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TContigPos = long int; TSetContigAnchorGaps = seqan::String, seqan::Alloc<> >, seqan::Alloc<> >; TVcfStream = seqan::FormattedFile, seqan::Tag >; TBedStream = seqan::FormattedFile, seqan::Tag >; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.cpp:742:35: required from 'bool detectSNPsForContig(seqan::VcfFileOut&, seqan::BedFileOut&, seqan::FragmentStore&, TContigId&, TBamFileIns&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TSpec = seqan::SnpStoreSpec_; TContigId = int; TBamFileIns = std::vector, seqan::Tag >*>; TRecords = std::vector; TContigIntervals = seqan::String > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions; seqan::VcfFileOut = seqan::FormattedFile, seqan::Tag >; seqan::BedFileOut = seqan::FormattedFile, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.cpp:901:32: required from 'int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.cpp:1265:28: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:89:15: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 89 | : data_iterator(_it) | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io.h:996:18: required from 'bool seqan::loadContigs(FragmentStore&, const StringSet > >&, bool) [with TFSSpec = SnpStoreSpec_; TFSConfig = FragmentStoreConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io.h:1043:23: required from 'bool seqan::loadContigs(FragmentStore&, const TFileNames&) [with TFSSpec = SnpStoreSpec_; TFSConfig = FragmentStoreConfig; TFileNames = StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.cpp:792:16: required from 'int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.cpp:1265:28: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io.h:996:18: required from 'bool seqan::loadContigs(FragmentStore&, const StringSet > >&, bool) [with TFSSpec = SnpStoreSpec_; TFSConfig = FragmentStoreConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io.h:1043:23: required from 'bool seqan::loadContigs(FragmentStore&, const TFileNames&) [with TFSSpec = SnpStoreSpec_; TFSConfig = FragmentStoreConfig; TFileNames = StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.cpp:792:16: required from 'int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.cpp:1265:28: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io.h:996:18: required from 'bool seqan::loadContigs(FragmentStore&, const StringSet > >&, bool) [with TFSSpec = SnpStoreSpec_; TFSConfig = FragmentStoreConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io.h:1043:23: required from 'bool seqan::loadContigs(FragmentStore&, const TFileNames&) [with TFSSpec = SnpStoreSpec_; TFSConfig = FragmentStoreConfig; TFileNames = StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.cpp:792:16: required from 'int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.cpp:1265:28: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned int': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::lexicalCast > >(seqan::String > const&)int': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned short': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned short const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)int', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int &' to 'seqan::BadLexicalCast::BadLexicalCast(int const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)unsigned int', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast(unsigned int const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)short', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, char*>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int &' to 'seqan::BadLexicalCast::BadLexicalCast(short const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)unsigned short', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, char*>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast(unsigned short const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, char*>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char &' to 'seqan::BadLexicalCast::BadLexicalCast(char const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)unsigned char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, unsigned char, seqan::TagList >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, char*>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char &' to 'seqan::BadLexicalCast::BadLexicalCast(unsigned char const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)signed char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(signed char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(signed char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, signed char>(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'seqan::tagApply >, char*>, unsigned char, seqan::TagList >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char &' to 'seqan::BadLexicalCast::BadLexicalCast(signed char const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)short', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, seqan::String >&>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, seqan::String >&>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(short const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, seqan::String >&>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char &' to 'seqan::BadLexicalCast::BadLexicalCast > >(char const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(unsigned char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(unsigned char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned char, seqan::TagList >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, seqan::String >&>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned char const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)signed char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(signed char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(signed char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, seqan::String >&>, signed char>(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned char, seqan::TagList >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char &' to 'seqan::BadLexicalCast::BadLexicalCast > >(signed char const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned short', inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:277:40, inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent >, seqan::TagList, void> >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::TagSelector, void> > const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:231:19, inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent >, seqan::TagList, seqan::TagList, void> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::TagSelector, seqan::TagList, void> > > const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:233:19, inlined from 'seqan::readRecord(seqan::BamAlignmentRecord&, seqan::FormattedFile, seqan::Tag, void>&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:241:15, inlined from 'readMatchesFromSamBam, seqan::Alloc >, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::FragmentStore >, int, long, SNPCallingOptions>(seqan::String, seqan::Alloc >, seqan::Alloc >&, seqan::FormattedFile, seqan::Tag, void>&, seqan::BamAlignmentRecord&, seqan::FragmentStore >&, seqan::FragmentStore >&, int, long, long, SNPCallingOptions&)int' at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.h:554:23: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'readMatchesFromSamBam, seqan::Alloc >, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::FragmentStore >, int, long, SNPCallingOptions>(seqan::String, seqan::Alloc >, seqan::Alloc >&, seqan::FormattedFile, seqan::Tag, void>&, seqan::BamAlignmentRecord&, seqan::FragmentStore >&, seqan::FragmentStore >&, int, long, long, SNPCallingOptions&)int': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned short const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned short', inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:306:44, inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent >, seqan::TagList, void> >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::TagSelector, void> > const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:231:19, inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent >, seqan::TagList, seqan::TagList, void> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::TagSelector, seqan::TagList, void> > > const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:233:19, inlined from 'seqan::readRecord(seqan::BamAlignmentRecord&, seqan::FormattedFile, seqan::Tag, void>&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:241:15, inlined from 'readMatchesFromSamBam, seqan::Alloc >, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::FragmentStore >, int, long, SNPCallingOptions>(seqan::String, seqan::Alloc >, seqan::Alloc >&, seqan::FormattedFile, seqan::Tag, void>&, seqan::BamAlignmentRecord&, seqan::FragmentStore >&, seqan::FragmentStore >&, int, long, long, SNPCallingOptions&)int' at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.h:554:23: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'readMatchesFromSamBam, seqan::Alloc >, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::FragmentStore >, int, long, SNPCallingOptions>(seqan::String, seqan::Alloc >, seqan::Alloc >&, seqan::FormattedFile, seqan::Tag, void>&, seqan::BamAlignmentRecord&, seqan::FragmentStore >&, seqan::FragmentStore >&, int, long, long, SNPCallingOptions&)int': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned short const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned int', inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:320:50, inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent >, seqan::TagList, void> >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::TagSelector, void> > const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:231:19, inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent >, seqan::TagList, seqan::TagList, void> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::TagSelector, seqan::TagList, void> > > const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:233:19, inlined from 'seqan::readRecord(seqan::BamAlignmentRecord&, seqan::FormattedFile, seqan::Tag, void>&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:241:15, inlined from 'readMatchesFromSamBam, seqan::Alloc >, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::FragmentStore >, int, long, SNPCallingOptions>(seqan::String, seqan::Alloc >, seqan::Alloc >&, seqan::FormattedFile, seqan::Tag, void>&, seqan::BamAlignmentRecord&, seqan::FragmentStore >&, seqan::FragmentStore >&, int, long, long, SNPCallingOptions&)int' at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar.h:554:23: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'readMatchesFromSamBam, seqan::Alloc >, seqan::Alloc >, seqan::FormattedFile, seqan::Tag, void>, seqan::FragmentStore >, int, long, SNPCallingOptions>(seqan::String, seqan::Alloc >, seqan::Alloc >&, seqan::FormattedFile, seqan::Tag, void>&, seqan::BamAlignmentRecord&, seqan::FragmentStore >&, seqan::FragmentStore >&, int, long, long, SNPCallingOptions&)int': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ [ 3%] Linking CXX executable ../../bin/casbar cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/bs_tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/casbar.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/casbar.dir/casbar.cpp.o -o ../../bin/casbar -lrt -lz In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from '_toText' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function '_toText': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from 'adjustConstantsSize.isra' at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar_calling.h:351:22: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function 'adjustConstantsSize.isra': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from 'adjustConstantsSize.isra' at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar_calling.h:352:22: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function 'adjustConstantsSize.isra': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from 'adjustConstantsSize.isra' at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar_calling.h:353:22: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function 'adjustConstantsSize.isra': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from 'adjustConstantsSize.isra' at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar_calling.h:354:22: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function 'adjustConstantsSize.isra': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from 'adjustConstantsSize.isra' at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar_calling.h:361:22: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function 'adjustConstantsSize.isra': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from 'adjustConstantsSize.isra' at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar_calling.h:362:22: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function 'adjustConstantsSize.isra': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from 'adjustConstantsSize.isra' at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar_calling.h:363:22: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function 'adjustConstantsSize.isra': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from 'adjustConstantsSize.isra' at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/casbar_calling.h:364:22: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function 'adjustConstantsSize.isra': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'obtainId' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_idmanager.h:166:15, inlined from 'addVertex' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:525:36, inlined from '_createVertices' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_interface.h:704:67, inlined from '_copyGraph' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:274:32, inlined from '_copyGraph' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:300:15, inlined from '__ct ' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:87:23, inlined from '__ct_base ' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:358:7: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function '__ct_base ': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'obtainId' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_idmanager.h:166:15, inlined from 'addVertex' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:525:36, inlined from '_createVertices' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_interface.h:704:67, inlined from '_copyGraph' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:276:32, inlined from '_copyGraph' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:300:15, inlined from '__ct ' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:87:23, inlined from '__ct_base ' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:358:7: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function '__ct_base ': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 3%] Built target casbar make -f apps/bs_tools/CMakeFiles/four2three.dir/build.make apps/bs_tools/CMakeFiles/four2three.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/bs_tools /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/bs_tools/CMakeFiles/four2three.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/bs_tools/CMakeFiles/four2three.dir/build.make apps/bs_tools/CMakeFiles/four2three.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 4%] Building CXX object apps/bs_tools/CMakeFiles/four2three.dir/four2three.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/bs_tools && /usr/bin/g++ -DSEQAN_APP_VERSION=\"0.1.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/bs_tools/CMakeFiles/four2three.dir/four2three.cpp.o -MF CMakeFiles/four2three.dir/four2three.cpp.o.d -o CMakeFiles/four2three.dir/four2three.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/four2three.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:45, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/four2three.cpp:37: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/four2three.cpp:35: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:50, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/bam_sam.h:39, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:55: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/four2three.cpp:40: /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/four2three.h:14:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 14 | struct ConvertCT : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/four2three.h:23:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 23 | struct ConvertGA : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/four2three.cpp:36: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/four2three.h:41:23: required from 'bool preProcess(TOptions&) [with TOptions = AppOptions]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/four2three.cpp:146:15: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/four2three.h:41:23: required from 'bool preProcess(TOptions&) [with TOptions = AppOptions]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/four2three.cpp:146:15: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/four2three.h:41:23: required from 'bool preProcess(TOptions&) [with TOptions = AppOptions]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/four2three.cpp:146:15: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/four2three.h:42:23: required from 'bool preProcess(TOptions&) [with TOptions = AppOptions]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/four2three.cpp:146:15: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/four2three.h:41:23: required from 'bool preProcess(TOptions&) [with TOptions = AppOptions]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/bs_tools/four2three.cpp:146:15: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ [ 4%] Linking CXX executable ../../bin/four2three cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/bs_tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/four2three.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/four2three.dir/four2three.cpp.o -o ../../bin/four2three -lrt -lz In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from '_toText' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function '_toText': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from '_toHtml' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/tool_doc.h:285:34: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551568' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function '_toHtml': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 4%] Built target four2three make -f apps/dfi/CMakeFiles/dfi.dir/build.make apps/dfi/CMakeFiles/dfi.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/dfi /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/dfi /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/dfi/CMakeFiles/dfi.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/dfi/CMakeFiles/dfi.dir/build.make apps/dfi/CMakeFiles/dfi.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 4%] Building CXX object apps/dfi/CMakeFiles/dfi.dir/dfi.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/dfi && /usr/bin/g++ -DSEQAN_APP_VERSION=\"2.1.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/dfi/CMakeFiles/dfi.dir/dfi.cpp.o -MF CMakeFiles/dfi.dir/dfi.cpp.o.d -o CMakeFiles/dfi.dir/dfi.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/dfi/dfi.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse.h:46, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/dfi/dfi.cpp:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/debug_test_system.h:150, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse.h:44: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:42, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/dfi/dfi.cpp:27: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find.h:47, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:46: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:47: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:76: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:91: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:102: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:107: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:110: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:111: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:114: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:121: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:125: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:131: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:188: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/dfi/dfi.cpp:28: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:50, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/bam_sam.h:39, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:55: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/dfi/dfi.cpp:268:34: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 268 | struct LessSubstringEnd : public binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/dfi/dfi.cpp:292:27: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 292 | struct LessRange : public binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/dfi/dfi.cpp:309:25: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 309 | struct LessLex : public binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/dfi/dfi.cpp:248:12: required from 'bool loadDatasets(TSequences&, const TFileNames&, TDatasets&) [with TSequences = seqan::StringSet, seqan::Owner<> >; TFileNames = std::vector >; TDatasets = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/dfi/dfi.cpp:498:19: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = unsigned char; TParamPredHull = seqan::String >; TParamPred = seqan::String >; TFileNames = std::vector >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/dfi/dfi.cpp:835:68: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:58: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/dfi/dfi.cpp:248:12: required from 'bool loadDatasets(TSequences&, const TFileNames&, TDatasets&) [with TSequences = seqan::StringSet, seqan::Owner<> >; TFileNames = std::vector >; TDatasets = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/dfi/dfi.cpp:498:19: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = unsigned char; TParamPredHull = seqan::String >; TParamPred = seqan::String >; TFileNames = std::vector >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/dfi/dfi.cpp:835:68: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/dfi/dfi.cpp:248:12: required from 'bool loadDatasets(TSequences&, const TFileNames&, TDatasets&) [with TSequences = seqan::StringSet, seqan::Owner<> >; TFileNames = std::vector >; TDatasets = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/dfi/dfi.cpp:498:19: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = unsigned char; TParamPredHull = seqan::String >; TParamPred = seqan::String >; TFileNames = std::vector >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/dfi/dfi.cpp:835:68: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/dfi/dfi.cpp:248:12: required from 'bool loadDatasets(TSequences&, const TFileNames&, TDatasets&) [with TSequences = seqan::StringSet, seqan::Owner<> >; TFileNames = std::vector >; TDatasets = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/dfi/dfi.cpp:498:19: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = unsigned char; TParamPredHull = seqan::String >; TParamPred = seqan::String >; TFileNames = std::vector >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/dfi/dfi.cpp:835:68: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/dfi/dfi.cpp:248:12: required from 'bool loadDatasets(TSequences&, const TFileNames&, TDatasets&) [with TSequences = seqan::StringSet, seqan::Owner<> >; TFileNames = std::vector >; TDatasets = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/dfi/dfi.cpp:498:19: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = unsigned char; TParamPredHull = seqan::String >; TParamPred = seqan::String >; TFileNames = std::vector >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/dfi/dfi.cpp:835:68: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/dfi/dfi.cpp:248:12: required from 'bool loadDatasets(TSequences&, const TFileNames&, TDatasets&) [with TSequences = seqan::StringSet, seqan::Owner<> >; TFileNames = std::vector >; TDatasets = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/dfi/dfi.cpp:498:19: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = unsigned char; TParamPredHull = seqan::String >; TParamPred = seqan::String >; TFileNames = std::vector >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/dfi/dfi.cpp:835:68: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/dfi/dfi.cpp:248:12: required from 'bool loadDatasets(TSequences&, const TFileNames&, TDatasets&) [with TSequences = seqan::StringSet, seqan::Owner<> >; TFileNames = std::vector >; TDatasets = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/dfi/dfi.cpp:498:19: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = unsigned char; TParamPredHull = seqan::String >; TParamPred = seqan::String >; TFileNames = std::vector >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/dfi/dfi.cpp:835:68: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ [ 4%] Linking CXX executable ../../bin/dfi cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/dfi && /usr/bin/cmake -E cmake_link_script CMakeFiles/dfi.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/dfi.dir/dfi.cpp.o -o ../../bin/dfi -lrt In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from '_toText' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function '_toText': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from '_goUp' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_wotd.h:915:22: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function '_goUp': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 4%] Built target dfi make -f apps/fiona/CMakeFiles/compute_gain.dir/build.make apps/fiona/CMakeFiles/compute_gain.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fiona /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fiona/CMakeFiles/compute_gain.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/fiona/CMakeFiles/compute_gain.dir/build.make apps/fiona/CMakeFiles/compute_gain.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 4%] Building CXX object apps/fiona/CMakeFiles/compute_gain.dir/compute_gain.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fiona && /usr/bin/g++ -DSEQAN_APP_VERSION=\"0.2.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/fiona/CMakeFiles/compute_gain.dir/compute_gain.cpp.o -MF CMakeFiles/compute_gain.dir/compute_gain.cpp.o.d -o CMakeFiles/compute_gain.dir/compute_gain.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/compute_gain.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:57, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/compute_gain.cpp:7: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/compute_gain.cpp:2: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score.h:43, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:45, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/compute_gain.cpp:11: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:47: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/compute_gain.cpp:907:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/compute_gain.cpp:907:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/compute_gain.cpp:907:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/compute_gain.cpp:907:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/compute_gain.cpp:907:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/compute_gain.cpp: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = Stats*; TParam = Stats]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Stats*; TParam = Stats]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:511:23: required from 'void seqan::_arrayConstructMoveDefault(TSource1, TSource2, TTarget) [with TTarget = Stats*; TSource1 = Stats*; TSource2 = Stats*]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:1055:31: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, False) [with TValue = Stats]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:1064:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = Stats]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1683:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Stats; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = Stats; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45: required from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50: required from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = Stats; TSpec = Alloc<>; TSize = int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18: required from 'typename seqan::Size::Type seqan::resize(T&&, TSize) [with T = String&; TSize = int; typename Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/compute_gain.cpp:986:11: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/compute_gain.cpp:98:8: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> > >::Align(const seqan::Align, seqan::Alloc<> > >&)' is deprecated [-Wdeprecated-copy] 98 | struct Stats | ^~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:97: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> > >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/compute_gain.cpp:98:8: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> > >::Align(const seqan::Align, seqan::Alloc<> > >&)' is deprecated [-Wdeprecated-copy] 98 | struct Stats | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> > >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_fundamental.h:82, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:58, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/compute_gain.cpp:6: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method 'Stats::Stats(Stats&&)' first required here 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned short': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned short const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned int': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)int', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int &' to 'seqan::BadLexicalCast::BadLexicalCast(int const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)unsigned int', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast(unsigned int const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)short', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, char*>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int &' to 'seqan::BadLexicalCast::BadLexicalCast(short const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)unsigned short', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, char*>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast(unsigned short const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, char*>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char &' to 'seqan::BadLexicalCast::BadLexicalCast(char const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)unsigned char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, unsigned char, seqan::TagList >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, char*>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char &' to 'seqan::BadLexicalCast::BadLexicalCast(unsigned char const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)signed char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(signed char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(signed char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, signed char>(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'seqan::tagApply >, char*>, unsigned char, seqan::TagList >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char &' to 'seqan::BadLexicalCast::BadLexicalCast(signed char const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)int', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, seqan::String >&>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)short', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, seqan::String >&>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, seqan::String >&>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(short const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, seqan::String >&>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char &' to 'seqan::BadLexicalCast::BadLexicalCast > >(char const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(unsigned char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(unsigned char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned char, seqan::TagList >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, seqan::String >&>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned char const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)signed char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(signed char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(signed char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, seqan::String >&>, signed char>(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned char, seqan::TagList >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char &' to 'seqan::BadLexicalCast::BadLexicalCast > >(signed char const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned short', inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void [clone .isra.0]' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:277:40: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void [clone .isra.0]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned short const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned short', inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void [clone .isra.0]' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:306:44: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void [clone .isra.0]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned short const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned int', inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void [clone .isra.0]' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:320:50: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void [clone .isra.0]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)int', inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void [clone .isra.0]' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:363:43: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void [clone .isra.0]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ [ 6%] Linking CXX executable ../../bin/compute_gain cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fiona && /usr/bin/cmake -E cmake_link_script CMakeFiles/compute_gain.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/compute_gain.dir/compute_gain.cpp.o -o ../../bin/compute_gain -lrt -lz In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from '_toText' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function '_toText': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 6%] Built target compute_gain make -f apps/fiona/CMakeFiles/fiona.dir/build.make apps/fiona/CMakeFiles/fiona.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fiona /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fiona/CMakeFiles/fiona.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/fiona/CMakeFiles/fiona.dir/build.make apps/fiona/CMakeFiles/fiona.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 7%] Building CXX object apps/fiona/CMakeFiles/fiona.dir/fiona.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fiona && /usr/bin/g++ -DSEQAN_APP_VERSION=\"0.2.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/fiona/CMakeFiles/fiona.dir/fiona.cpp.o -MF CMakeFiles/fiona.dir/fiona.cpp.o.d -o CMakeFiles/fiona.dir/fiona.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:42, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:117: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/parallel/base.h:36, from /usr/include/c++/13/parallel/algobase.h:40, from /usr/include/c++/13/parallel/algorithm:36, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:81: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find.h:47, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:46: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:47: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:76: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:91: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:102: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:107: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:110: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:111: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:114: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:121: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:125: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:131: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:188: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:118: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:41: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:1636:34: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1636 | struct LessOverlap : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:1654:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1654 | struct LessPositionOverlap : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp: In function 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag)': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4410:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 4410 | if (options.verbosity >= 1) | ^~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:58, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:114: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/profiling.h:82:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 82 | #define SEQAN_PROTIMESTART(a) _proFloat a = sysTime() | ^~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4412:9: note: in expansion of macro 'SEQAN_PROTIMESTART' 4412 | SEQAN_PROTIMESTART(search); | ^~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score.h:43, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find.h:45: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:115: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:578:18: required from 'bool seqan::loadReadsNoNames(FragmentStore&, TFileName&, const FionaOptions&) [with TFSSpec = void; TFSConfig = FionaStoreConfig; TFileName = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5438:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:105: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment> >&; TSource = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4635:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1342 | TTargetValue temp_copy(std::forward(_value)); //temp copy because resize could invalidate _value | ^~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:96: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:138: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(Iter > >&) [with TIndex = Index, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = Preorder]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:311:18: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:1731:24: warning: implicitly-declared 'constexpr seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 1731 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:142: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String >*>, seqan::InfixSegment>, seqan::Array<4> >; TValue = seqan::Segment >*>, seqan::InfixSegment>; TExpand = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment >*>, InfixSegment>; TTargetSpec = Array<4>; TValue = Segment >*>, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String >*>, InfixSegment>, Array<4> >&; TSource = Segment >*>, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:3574:32: required from 'void traverseAndSearchCorrections(TTreeIterator, TFragmentStore&, seqan::String&, seqan::String&, FionaOptions&, seqan::Tag, unsigned int, FionaResources&) [with int LOOP_LEVEL = -1; TTreeIterator = seqan::Iter, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >, seqan::VSTree > > >; TFragmentStore = seqan::FragmentStore; TCorrections = CorrectionIndelPos; TValueId = unsigned int; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4893:41: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared 'constexpr seqan::Segment >*>, seqan::InfixSegment>::Segment(const seqan::Segment >*>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1342 | TTargetValue temp_copy(std::forward(_value)); //temp copy because resize could invalidate _value | ^~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >*>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::Range >*>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String >*>, seqan::InfixSegment>, seqan::Array<4> >; TValue = seqan::Segment >*>, seqan::InfixSegment>&; TExpand = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment >*>, InfixSegment>; TTargetSpec = Array<4>; TValue = Segment >*>, InfixSegment>&; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String >*>, InfixSegment>, Array<4> >&; TSource = Segment >*>, InfixSegment>&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:3582:24: required from 'void traverseAndSearchCorrections(TTreeIterator, TFragmentStore&, seqan::String&, seqan::String&, FionaOptions&, seqan::Tag, unsigned int, FionaResources&) [with int LOOP_LEVEL = -1; TTreeIterator = seqan::Iter, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >, seqan::VSTree > > >; TFragmentStore = seqan::FragmentStore; TCorrections = CorrectionIndelPos; TValueId = unsigned int; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4893:41: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared 'constexpr seqan::Segment >*>, seqan::InfixSegment>::Segment(const seqan::Segment >*>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1342 | TTargetValue temp_copy(std::forward(_value)); //temp copy because resize could invalidate _value | ^~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >*>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::Range >*>]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:578:18: required from 'bool seqan::loadReadsNoNames(FragmentStore&, TFileName&, const FionaOptions&) [with TFSSpec = void; TFSConfig = FionaStoreConfig; TFileName = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5438:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown<>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(Iter >&) [with TIndex = Index, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:312:10: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:578:18: required from 'bool seqan::loadReadsNoNames(FragmentStore&, TFileName&, const FionaOptions&) [with TFSSpec = void; TFSConfig = FionaStoreConfig; TFileName = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5438:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_fundamental.h:82, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1348:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment> >&; TSource = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4635:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1354:27: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment> >&; TSource = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4635:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(Iter >&) [with TIndex = Index, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:2259:22: required from 'void seqan::goNextImpl(Iter > > >&, VSTreeIteratorTraits) [with TIndex = Index, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = Preorder; THideEmptyEdges = True]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:1660:19: required from 'void seqan::goNext(Iter >&, TTraits) [with TIndex = Index, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown >; TTraits = Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:1655:15: required from 'void seqan::goNext(Iter >&) [with TIndex = Index, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:3475:19: required from 'void traverseAndSearchCorrections(TTreeIterator, TFragmentStore&, seqan::String&, seqan::String&, FionaOptions&, seqan::Tag, unsigned int, FionaResources&) [with int LOOP_LEVEL = -1; TTreeIterator = seqan::Iter, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >, seqan::VSTree > > >; TFragmentStore = seqan::FragmentStore; TCorrections = CorrectionIndelPos; TValueId = unsigned int; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4893:41: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment >*>, seqan::InfixSegment>*; TParam = seqan::Segment >*>, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment >*>, InfixSegment>*; TParam = Segment >*>, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1348:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String >*>, seqan::InfixSegment>, seqan::Array<4> >; TValue = seqan::Segment >*>, seqan::InfixSegment>; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment >*>, InfixSegment>; TTargetSpec = Array<4>; TValue = Segment >*>, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String >*>, InfixSegment>, Array<4> >&; TSource = Segment >*>, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:3574:32: required from 'void traverseAndSearchCorrections(TTreeIterator, TFragmentStore&, seqan::String&, seqan::String&, FionaOptions&, seqan::Tag, unsigned int, FionaResources&) [with int LOOP_LEVEL = -1; TTreeIterator = seqan::Iter, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >, seqan::VSTree > > >; TFragmentStore = seqan::FragmentStore; TCorrections = CorrectionIndelPos; TValueId = unsigned int; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4893:41: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment >*>, seqan::InfixSegment>::Segment(const seqan::Segment >*>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >*>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::Range >*>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment >*>, seqan::InfixSegment>*; TParam = seqan::Segment >*>, seqan::InfixSegment>&]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment >*>, InfixSegment>*; TParam = Segment >*>, InfixSegment>&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1354:27: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String >*>, seqan::InfixSegment>, seqan::Array<4> >; TValue = seqan::Segment >*>, seqan::InfixSegment>&; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment >*>, InfixSegment>; TTargetSpec = Array<4>; TValue = Segment >*>, InfixSegment>&; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String >*>, InfixSegment>, Array<4> >&; TSource = Segment >*>, InfixSegment>&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:3582:24: required from 'void traverseAndSearchCorrections(TTreeIterator, TFragmentStore&, seqan::String&, seqan::String&, FionaOptions&, seqan::Tag, unsigned int, FionaResources&) [with int LOOP_LEVEL = -1; TTreeIterator = seqan::Iter, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >, seqan::VSTree > > >; TFragmentStore = seqan::FragmentStore; TCorrections = CorrectionIndelPos; TValueId = unsigned int; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4893:41: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment >*>, seqan::InfixSegment>::Segment(const seqan::Segment >*>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >*>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::Range >*>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5002:23: required from 'int writeOutput(unsigned int&, const TFragmentStore&, const FionaOptions&) [with TFragmentStore = seqan::FragmentStore]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5611:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:578:18: required from 'bool seqan::loadReadsNoNames(FragmentStore&, TFileName&, const FionaOptions&) [with TFSSpec = void; TFSConfig = FionaStoreConfig; TFileName = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5438:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = Range >*>; TString = String, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = Range >*>; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:198:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_aggregate.h:58, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:98: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:56: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 5, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:414:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 5, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 4, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:415:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 4, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:432:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:443:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:243:12: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:173:12: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:312:20: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:312:20: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = SorterSpec, Tuple, Tag >, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender3.h:123:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, long unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:218:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:376:49: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:447:21: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:465:13: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, long unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:218:20: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, long unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:218:20: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended, Tuple >, Tag >, long unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:302:21: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:320:13: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple, Tag >; TConfig = MapperConfigSize<_skew3NMapExtended, Tuple, Tag >, long unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger3.h:111:17: required from 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:329:13: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ [ 7%] Linking CXX executable ../../bin/fiona cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fiona && /usr/bin/cmake -E cmake_link_script CMakeFiles/fiona.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/fiona.dir/fiona.cpp.o -o ../../bin/fiona -lrt -lz In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:280:21: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:290:21: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from '_goUp' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:617:18: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function '_goUp': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'append' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1330:13: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function 'append': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from '_goUp' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:617:18, inlined from 'goUp' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:2066:18, inlined from 'goNextImpl.isra' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:2257:28: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function 'goNextImpl.isra': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from '_goUp' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:617:18, inlined from 'goUp' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:2066:18, inlined from 'goNextRightImpl.isra' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:2272:24: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function 'goNextRightImpl.isra': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'append' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1330:13: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function 'append': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from '_toText' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function '_toText': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from '_toHtml' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/tool_doc.h:285:34: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551568' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function '_toHtml': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1330:13: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function 'append': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:424:21: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:433:21: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++.isra' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger3.h:127:17: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'operator++.isra': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 7%] Built target fiona make -f apps/fiona/CMakeFiles/fiona_illumina.dir/build.make apps/fiona/CMakeFiles/fiona_illumina.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fiona /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fiona/CMakeFiles/fiona_illumina.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/fiona/CMakeFiles/fiona_illumina.dir/build.make apps/fiona/CMakeFiles/fiona_illumina.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 9%] Building CXX object apps/fiona/CMakeFiles/fiona_illumina.dir/fiona.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fiona && /usr/bin/g++ -DFIONA_ILLUMINA -DSEQAN_APP_VERSION=\"0.2.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/fiona/CMakeFiles/fiona_illumina.dir/fiona.cpp.o -MF CMakeFiles/fiona_illumina.dir/fiona.cpp.o.d -o CMakeFiles/fiona_illumina.dir/fiona.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:42, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:117: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/parallel/base.h:36, from /usr/include/c++/13/parallel/algobase.h:40, from /usr/include/c++/13/parallel/algorithm:36, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:81: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find.h:47, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:46: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:47: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:76: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:91: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:102: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:107: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:110: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:111: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:114: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:121: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:125: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:131: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:188: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:118: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:41: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:1636:34: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1636 | struct LessOverlap : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:1654:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1654 | struct LessPositionOverlap : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp: In function 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag)': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4410:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 4410 | if (options.verbosity >= 1) | ^~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:58, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:114: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/profiling.h:82:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 82 | #define SEQAN_PROTIMESTART(a) _proFloat a = sysTime() | ^~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4412:9: note: in expansion of macro 'SEQAN_PROTIMESTART' 4412 | SEQAN_PROTIMESTART(search); | ^~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score.h:43, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find.h:45: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:115: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:578:18: required from 'bool seqan::loadReadsNoNames(FragmentStore&, TFileName&, const FionaOptions&) [with TFSSpec = void; TFSConfig = FionaStoreConfig; TFileName = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5438:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:105: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment> >&; TSource = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4635:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1342 | TTargetValue temp_copy(std::forward(_value)); //temp copy because resize could invalidate _value | ^~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:96: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:138: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(Iter > >&) [with TIndex = Index, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = Preorder]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:311:18: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:1731:24: warning: implicitly-declared 'constexpr seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 1731 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:142: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String >*>, seqan::InfixSegment>, seqan::Array<4> >; TValue = seqan::Segment >*>, seqan::InfixSegment>; TExpand = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment >*>, InfixSegment>; TTargetSpec = Array<4>; TValue = Segment >*>, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String >*>, InfixSegment>, Array<4> >&; TSource = Segment >*>, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:3574:32: required from 'void traverseAndSearchCorrections(TTreeIterator, TFragmentStore&, seqan::String&, seqan::String&, FionaOptions&, seqan::Tag, unsigned int, FionaResources&) [with int LOOP_LEVEL = -1; TTreeIterator = seqan::Iter, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >, seqan::VSTree > > >; TFragmentStore = seqan::FragmentStore; TCorrections = CorrectionIndelPos; TValueId = unsigned int; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4893:41: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared 'constexpr seqan::Segment >*>, seqan::InfixSegment>::Segment(const seqan::Segment >*>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1342 | TTargetValue temp_copy(std::forward(_value)); //temp copy because resize could invalidate _value | ^~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >*>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::Range >*>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String >*>, seqan::InfixSegment>, seqan::Array<4> >; TValue = seqan::Segment >*>, seqan::InfixSegment>&; TExpand = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment >*>, InfixSegment>; TTargetSpec = Array<4>; TValue = Segment >*>, InfixSegment>&; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String >*>, InfixSegment>, Array<4> >&; TSource = Segment >*>, InfixSegment>&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:3582:24: required from 'void traverseAndSearchCorrections(TTreeIterator, TFragmentStore&, seqan::String&, seqan::String&, FionaOptions&, seqan::Tag, unsigned int, FionaResources&) [with int LOOP_LEVEL = -1; TTreeIterator = seqan::Iter, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >, seqan::VSTree > > >; TFragmentStore = seqan::FragmentStore; TCorrections = CorrectionIndelPos; TValueId = unsigned int; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4893:41: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared 'constexpr seqan::Segment >*>, seqan::InfixSegment>::Segment(const seqan::Segment >*>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1342 | TTargetValue temp_copy(std::forward(_value)); //temp copy because resize could invalidate _value | ^~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >*>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::Range >*>]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:578:18: required from 'bool seqan::loadReadsNoNames(FragmentStore&, TFileName&, const FionaOptions&) [with TFSSpec = void; TFSConfig = FionaStoreConfig; TFileName = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5438:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown<>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(Iter >&) [with TIndex = Index, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:312:10: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:578:18: required from 'bool seqan::loadReadsNoNames(FragmentStore&, TFileName&, const FionaOptions&) [with TFSSpec = void; TFSConfig = FionaStoreConfig; TFileName = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5438:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_fundamental.h:82, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1348:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment> >&; TSource = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4635:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1354:27: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment> >&; TSource = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4635:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(Iter >&) [with TIndex = Index, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:2259:22: required from 'void seqan::goNextImpl(Iter > > >&, VSTreeIteratorTraits) [with TIndex = Index, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = Preorder; THideEmptyEdges = True]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:1660:19: required from 'void seqan::goNext(Iter >&, TTraits) [with TIndex = Index, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown >; TTraits = Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:1655:15: required from 'void seqan::goNext(Iter >&) [with TIndex = Index, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:3475:19: required from 'void traverseAndSearchCorrections(TTreeIterator, TFragmentStore&, seqan::String&, seqan::String&, FionaOptions&, seqan::Tag, unsigned int, FionaResources&) [with int LOOP_LEVEL = -1; TTreeIterator = seqan::Iter, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >, seqan::VSTree > > >; TFragmentStore = seqan::FragmentStore; TCorrections = CorrectionIndelPos; TValueId = unsigned int; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4893:41: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment >*>, seqan::InfixSegment>*; TParam = seqan::Segment >*>, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment >*>, InfixSegment>*; TParam = Segment >*>, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1348:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String >*>, seqan::InfixSegment>, seqan::Array<4> >; TValue = seqan::Segment >*>, seqan::InfixSegment>; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment >*>, InfixSegment>; TTargetSpec = Array<4>; TValue = Segment >*>, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String >*>, InfixSegment>, Array<4> >&; TSource = Segment >*>, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:3574:32: required from 'void traverseAndSearchCorrections(TTreeIterator, TFragmentStore&, seqan::String&, seqan::String&, FionaOptions&, seqan::Tag, unsigned int, FionaResources&) [with int LOOP_LEVEL = -1; TTreeIterator = seqan::Iter, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >, seqan::VSTree > > >; TFragmentStore = seqan::FragmentStore; TCorrections = CorrectionIndelPos; TValueId = unsigned int; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4893:41: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment >*>, seqan::InfixSegment>::Segment(const seqan::Segment >*>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >*>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::Range >*>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment >*>, seqan::InfixSegment>*; TParam = seqan::Segment >*>, seqan::InfixSegment>&]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment >*>, InfixSegment>*; TParam = Segment >*>, InfixSegment>&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1354:27: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String >*>, seqan::InfixSegment>, seqan::Array<4> >; TValue = seqan::Segment >*>, seqan::InfixSegment>&; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment >*>, InfixSegment>; TTargetSpec = Array<4>; TValue = Segment >*>, InfixSegment>&; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String >*>, InfixSegment>, Array<4> >&; TSource = Segment >*>, InfixSegment>&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:3582:24: required from 'void traverseAndSearchCorrections(TTreeIterator, TFragmentStore&, seqan::String&, seqan::String&, FionaOptions&, seqan::Tag, unsigned int, FionaResources&) [with int LOOP_LEVEL = -1; TTreeIterator = seqan::Iter, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >, seqan::VSTree > > >; TFragmentStore = seqan::FragmentStore; TCorrections = CorrectionIndelPos; TValueId = unsigned int; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4893:41: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment >*>, seqan::InfixSegment>::Segment(const seqan::Segment >*>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >*>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::Range >*>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5002:23: required from 'int writeOutput(unsigned int&, const TFragmentStore&, const FionaOptions&) [with TFragmentStore = seqan::FragmentStore]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5611:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:578:18: required from 'bool seqan::loadReadsNoNames(FragmentStore&, TFileName&, const FionaOptions&) [with TFSSpec = void; TFSConfig = FionaStoreConfig; TFileName = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5438:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = Range >*>; TString = String, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = Range >*>; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:198:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_aggregate.h:58, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:98: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:56: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 5, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:414:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 5, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 4, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:415:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 4, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:432:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:443:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:243:12: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:173:12: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:312:20: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:312:20: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = SorterSpec, Tuple, Tag >, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender3.h:123:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, long unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:218:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:376:49: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:447:21: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:465:13: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, long unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:218:20: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, long unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:218:20: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended, Tuple >, Tag >, long unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:302:21: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:320:13: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple, Tag >; TConfig = MapperConfigSize<_skew3NMapExtended, Tuple, Tag >, long unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger3.h:111:17: required from 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:329:13: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:4874:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona/fiona.cpp:5533:44: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ [ 9%] Linking CXX executable ../../bin/fiona_illumina cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fiona && /usr/bin/cmake -E cmake_link_script CMakeFiles/fiona_illumina.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/fiona_illumina.dir/fiona.cpp.o -o ../../bin/fiona_illumina -lrt -lz In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:280:21: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:290:21: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from '_goUp' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:617:18: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function '_goUp': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'append' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1330:13: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function 'append': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from '_goUp' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:617:18, inlined from 'goUp' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:2066:18, inlined from 'goNextImpl.isra' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:2257:28: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function 'goNextImpl.isra': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from '_goUp' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:617:18, inlined from 'goUp' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:2066:18, inlined from 'goNextRightImpl.isra' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:2272:24: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function 'goNextRightImpl.isra': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from '_toText' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function '_toText': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from '_toHtml' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/tool_doc.h:285:34: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551568' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function '_toHtml': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'append' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1330:13: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function 'append': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1330:13: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function 'append': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:424:21: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:433:21: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++.isra' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger3.h:127:17: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'operator++.isra': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 9%] Built target fiona_illumina make -f apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build.make apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fx_tools /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fx_tools /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build.make apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 10%] Building CXX object apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/fx_bam_coverage.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fx_tools && /usr/bin/g++ -DSEQAN_APP_VERSION=\"0.2.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/fx_bam_coverage.cpp.o -MF CMakeFiles/fx_bam_coverage.dir/fx_bam_coverage.cpp.o.d -o CMakeFiles/fx_bam_coverage.dir/fx_bam_coverage.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fx_tools/fx_bam_coverage.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse.h:46, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fx_tools/fx_bam_coverage.cpp:40: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fx_tools/fx_bam_coverage.cpp:38: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:50, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fx_tools/fx_bam_coverage.cpp:45: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fx_tools/fx_bam_coverage.cpp:46: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fx_tools/fx_bam_coverage.cpp:254:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:58: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fx_tools/fx_bam_coverage.cpp:254:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned short': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned short const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned int': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)int', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int &' to 'seqan::BadLexicalCast::BadLexicalCast(int const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)unsigned int', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast(unsigned int const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)short', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, char*>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int &' to 'seqan::BadLexicalCast::BadLexicalCast(short const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)unsigned short', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, char*>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast(unsigned short const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, char*>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char &' to 'seqan::BadLexicalCast::BadLexicalCast(char const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)unsigned char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, unsigned char, seqan::TagList >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, char*>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char &' to 'seqan::BadLexicalCast::BadLexicalCast(unsigned char const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)signed char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(signed char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(signed char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, signed char>(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'seqan::tagApply >, char*>, unsigned char, seqan::TagList >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char &' to 'seqan::BadLexicalCast::BadLexicalCast(signed char const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)int', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, seqan::String >&>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)short', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, seqan::String >&>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, seqan::String >&>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(short const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, seqan::String >&>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char &' to 'seqan::BadLexicalCast::BadLexicalCast > >(char const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(unsigned char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(unsigned char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned char, seqan::TagList >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, seqan::String >&>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned char const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)signed char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(signed char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(signed char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, seqan::String >&>, signed char>(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned char, seqan::TagList >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char &' to 'seqan::BadLexicalCast::BadLexicalCast > >(signed char const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned short', inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:277:40, inlined from 'seqan::readRecord(seqan::BamAlignmentRecord&, seqan::FormattedFile, seqan::Tag, void>&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:241:15, inlined from 'main' at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fx_tools/fx_bam_coverage.cpp:266:19: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'main': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned short const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned short', inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:306:44, inlined from 'seqan::readRecord(seqan::BamAlignmentRecord&, seqan::FormattedFile, seqan::Tag, void>&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:241:15, inlined from 'main' at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fx_tools/fx_bam_coverage.cpp:266:19: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'main': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned short const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned int', inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:320:50, inlined from 'seqan::readRecord(seqan::BamAlignmentRecord&, seqan::FormattedFile, seqan::Tag, void>&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:241:15, inlined from 'main' at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fx_tools/fx_bam_coverage.cpp:266:19: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'main': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)int', inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:363:43, inlined from 'seqan::readRecord(seqan::BamAlignmentRecord&, seqan::FormattedFile, seqan::Tag, void>&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:241:15, inlined from 'main' at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fx_tools/fx_bam_coverage.cpp:266:19: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'main': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ [ 10%] Linking CXX executable ../../bin/fx_bam_coverage cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fx_tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/fx_bam_coverage.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/fx_bam_coverage.dir/fx_bam_coverage.cpp.o -o ../../bin/fx_bam_coverage -lrt In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from '_toText' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function '_toText': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 10%] Built target fx_bam_coverage make -f apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build.make apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fx_tools /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fx_tools /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build.make apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 12%] Building CXX object apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/fx_fastq_stats.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fx_tools && /usr/bin/g++ -DSEQAN_APP_VERSION=\"0.2.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/fx_fastq_stats.cpp.o -MF CMakeFiles/fx_fastq_stats.dir/fx_fastq_stats.cpp.o.d -o CMakeFiles/fx_fastq_stats.dir/fx_fastq_stats.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fx_tools/fx_fastq_stats.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse.h:46, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fx_tools/fx_fastq_stats.cpp:37: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_tree.h:65, from /usr/include/c++/13/map:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fx_tools/fx_fastq_stats.cpp:35: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fx_tools/fx_fastq_stats.cpp:39: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:50, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/bam_sam.h:39, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:55: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fx_tools/fx_fastq_stats.cpp:290:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:58: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fx_tools/fx_fastq_stats.cpp:290:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fx_tools/fx_fastq_stats.cpp:290:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fx_tools/fx_fastq_stats.cpp:290:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fx_tools/fx_fastq_stats.cpp:290:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fx_tools/fx_fastq_stats.cpp:290:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fx_tools/fx_fastq_stats.cpp:290:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ [ 12%] Linking CXX executable ../../bin/fx_fastq_stats cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fx_tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/fx_fastq_stats.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/fx_fastq_stats.dir/fx_fastq_stats.cpp.o -o ../../bin/fx_fastq_stats -lrt In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from '_toText' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function '_toText': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from '_toHtml' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/tool_doc.h:285:34: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551568' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function '_toHtml': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 12%] Built target fx_fastq_stats make -f apps/gustaf/CMakeFiles/gustaf.dir/build.make apps/gustaf/CMakeFiles/gustaf.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/gustaf /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/gustaf/CMakeFiles/gustaf.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/gustaf/CMakeFiles/gustaf.dir/build.make apps/gustaf/CMakeFiles/gustaf.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 12%] Building CXX object apps/gustaf/CMakeFiles/gustaf.dir/gustaf.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/gustaf && /usr/bin/g++ -DSEQAN_APP_VERSION=\"1.0.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/gustaf/CMakeFiles/gustaf.dir/gustaf.cpp.o -MF CMakeFiles/gustaf.dir/gustaf.cpp.o.d -o CMakeFiles/gustaf.dir/gustaf.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/gustaf.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:42, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar.h:28, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/gustaf.cpp:27: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/debug_test_system.h:150, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/gustaf.cpp:24: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find.h:47, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:46: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:47: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:76: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:91: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:102: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:107: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:110: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:111: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:114: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:121: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:125: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:131: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:188: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seeds.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar.h:29: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar.h:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar_types.h:155:32: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 155 | struct LessPos : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar_types.h:207:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 207 | struct LessLength : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parse_lm.h:47, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/create_stellarmatches_from_file.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/msplazer.h:44, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/msplazer_parse_options.h:40, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/gustaf.cpp:28: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/stellar_routines.h:197:20: required from 'void _getStellarMatches(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String, seqan::Alloc<> >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/msplazer_main.h:146:27: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar.h:677:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 677 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:96, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/gustaf.cpp:25: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar.h:690:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 690 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:103:29: required from 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar.h:677:33: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/stellar_routines.h:197:20: required from 'void _getStellarMatches(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String, seqan::Alloc<> >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/msplazer_main.h:146:27: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar.h: In instantiation of 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar.h:614:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/stellar_routines.h:197:20: required from 'void _getStellarMatches(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String, seqan::Alloc<> >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/msplazer_main.h:146:27: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar.h:194:24: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 194 | TAlign ali(align); | ^~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:97: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score.h:43, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find.h:45: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Vcf_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/msplazer_out.h:1054:14: required from 'bool _writeGlobalBreakpoints(seqan::String&, seqan::StringSet >&, seqan::StringSet&, const MSplazerOptions&, seqan::Vcf) [with TBreakpoint = Breakpoint, seqan::Alloc<> >, seqan::String > >; TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; seqan::Vcf = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/msplazer_main.h:283:28: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/gustaf_matepairs.h:143:14: required from 'bool _importSequences(const seqan::CharString&, const seqan::CharString&, bool, seqan::StringSet >&, seqan::StringSet >&, seqan::String >&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/msplazer_main.h:71:30: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_smart_pointer.h:47, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_allocator.h:46, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:74: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(const T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:202:32: required from 'typename seqan::Parameter_::Type seqan::host(const Segment&) [with THost_ = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar.h:577:88: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/stellar_routines.h:197:20: required from 'void _getStellarMatches(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String, seqan::Alloc<> >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/msplazer_main.h:146:27: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_type.h:365:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 365 | return _object; | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagGff_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/msplazer_out.h:356:14: required from 'bool _writeGlobalBreakpoints(seqan::String&, const MSplazerOptions&, seqan::Gff) [with TBreakpoint = Breakpoint, seqan::Alloc<> >, seqan::String > >; seqan::Gff = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/msplazer_main.h:282:28: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/gustaf_matepairs.h:143:14: required from 'bool _importSequences(const seqan::CharString&, const seqan::CharString&, bool, seqan::StringSet >&, seqan::StringSet >&, seqan::String >&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/msplazer_main.h:71:30: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagGtf_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/msplazer_out.h:356:14: required from 'bool _writeGlobalBreakpoints(seqan::String&, const MSplazerOptions&, seqan::Gff) [with TBreakpoint = Breakpoint, seqan::Alloc<> >, seqan::String > >; seqan::Gff = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/msplazer_main.h:282:28: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Vcf_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/msplazer_out.h:1054:14: required from 'bool _writeGlobalBreakpoints(seqan::String&, seqan::StringSet >&, seqan::StringSet&, const MSplazerOptions&, seqan::Vcf) [with TBreakpoint = Breakpoint, seqan::Alloc<> >, seqan::String > >; TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; seqan::Vcf = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/msplazer_main.h:283:28: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/gustaf_matepairs.h:143:14: required from 'bool _importSequences(const seqan::CharString&, const seqan::CharString&, bool, seqan::StringSet >&, seqan::StringSet >&, seqan::String >&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/msplazer_main.h:71:30: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:190: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In instantiation of 'void seqan::_alignBandedSmithWatermanDeclump(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, const TScore&, TScoreValue, TDiagonal, TDiagonal) [with TScoreValue = int; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScore = Score >; TDiagonal = int]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:570:37: required from 'TScoreValue seqan::_localAlignmentNext(LocalAlignmentFinder&, Gaps&, Gaps&, const TScore&, TScoreValue, TDiagonal, TDiagonal, const BandedWatermanEggert&) [with TScoreValue = int; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecH = Tag; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecV = Tag; TScore = Score >; TDiagonal = int; BandedWatermanEggert = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/local_alignment_enumeration_banded.h:109:35: required from 'bool seqan::nextLocalAlignment(Gaps&, Gaps&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecH = Tag; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecV = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/local_alignment_enumeration_banded.h:121:30: required from 'bool seqan::nextLocalAlignment(Align&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequence = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TAlignSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar.h:607:30: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/stellar_routines.h:197:20: required from 'void _getStellarMatches(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String, seqan::Alloc<> >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/msplazer_main.h:146:27: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:287:20: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 287 | matIt2 = matIt - diagonalWidth; | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_iterator.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:86: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:105: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&; TExpand = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TTargetSpec = Alloc<>; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String, Alloc<> >, InfixSegment>, InfixSegment>, Tag >, Alloc<> >&; TSource = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar.h:217:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar.h:614:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/stellar_routines.h:197:20: required from 'void _getStellarMatches(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String, seqan::Alloc<> >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/msplazer_main.h:146:27: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 1342 | TTargetValue temp_copy(std::forward(_value)); //temp copy because resize could invalidate _value | ^~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:195:32: required from 'typename seqan::Parameter_::Type seqan::host(Segment&) [with THost_ = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar_extension.h:773:28: required from 'void integrateAlign(seqan::Align&, const seqan::Align, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec1 = seqan::Tag; TSpec2 = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar_extension.h:801:19: required from 'bool _extendAndExtract(const seqan::Align, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment::Type, seqan::InfixSegment>&, const seqan::Segment::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score >; TSequence = seqan::String, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar.h:633:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/stellar_routines.h:197:20: required from 'void _getStellarMatches(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String, seqan::Alloc<> >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/msplazer_main.h:146:27: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_type.h:358:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 358 | return _object; | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:56, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h: In instantiation of 'void seqan::findIntervals(String&, const Graph&, const TPropertyMap&, TVertexDescriptor&, TValue, TValue) [with TSpec = Directed >; TPropertyMap = String, StorePointsOnly>, Alloc<> >; TVertexDescriptor = unsigned int; TValue = unsigned int; TCargo = unsigned int]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:1532:18: required from 'void seqan::findIntervals(String&, const Graph&, const TPropertyMap&, TValue, TValue) [with TSpec = Directed >; TPropertyMap = String, StorePointsOnly>, Alloc<> >; TValue = unsigned int; TCargo = unsigned int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:1513:18: required from 'void seqan::findIntervals(String&, const IntervalTree&, TValue2, TValue2) [with TValue = unsigned int; TCargo = unsigned int; TValue2 = unsigned int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/gustaf_matepairs.h:255:18: required from 'bool _checkRightMateMatches(const TMatch&, const seqan::String&, const TMSplazerChain&, const MSplazerOptions&) [with TMatch = StellarMatch, seqan::Alloc<> >, seqan::String > >; TMSplazerChain = MSplazerChain >, unsigned int, seqan::String, SparsePropertyMap, seqan::Alloc<> >, seqan::String > >, unsigned int>, seqan::String, seqan::Alloc<> >, seqan::String > >, seqan::Alloc<> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/gustaf_matepairs.h:294:42: required from 'bool _checkMateMatches(const TMatch&, const seqan::String&, const TMSplazerChain&, const MSplazerOptions&) [with TMatch = StellarMatch, seqan::Alloc<> >, seqan::String > >; TMSplazerChain = MSplazerChain >, unsigned int, seqan::String, SparsePropertyMap, seqan::Alloc<> >, seqan::String > >, unsigned int>, seqan::String, seqan::Alloc<> >, seqan::String > >, seqan::Alloc<> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/gustaf_matepairs.h:458:35: required from 'void _initialiseGraphMatePairs(QueryMatches >&, TId&, TMSplazerChain&, const MSplazerOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TMSplazerChain = MSplazerChain >, unsigned int, seqan::String, SparsePropertyMap, seqan::Alloc<> >, seqan::String > >, unsigned int>, seqan::String, seqan::Alloc<> >, seqan::String > >, seqan::Alloc<> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/msplazer_algorithms.h:840:42: required from 'void _chainQueryMatches(seqan::StringSet > >&, seqan::String&, seqan::String&, seqan::StringSet >&, seqan::StringSet >&, seqan::String >&, const MSplazerOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TScoreAlloc = seqan::String; TMSplazerChain = MSplazerChain >, unsigned int, seqan::String, SparsePropertyMap, seqan::Alloc<> >, seqan::String > >, unsigned int>, seqan::String, seqan::Alloc<> >, seqan::String > >, seqan::Alloc<> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/msplazer_main.h:230:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:1562:18: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1562 | act_prop = property(pm, act_knot); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:1575:23: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1575 | next_prop = property(pm, targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:1598:27: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1598 | next_prop = property(pm, targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/gustaf_matepairs.h:143:14: required from 'bool _importSequences(const seqan::CharString&, const seqan::CharString&, bool, seqan::StringSet >&, seqan::StringSet >&, seqan::String >&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/msplazer_main.h:71:30: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_fundamental.h:72, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TSource = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; typename DisableIf > >::Type = void]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TValue2 = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; typename Reference > >::Type = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:339:17: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TSpec = Swift >; typename Host >::Type = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:395:16: required from 'typename seqan::Needle >::Type& seqan::needle(Pattern&) [with TNeedle = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TSpec = Swift >; typename Needle >::Type = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar.h:687:78: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/stellar_routines.h:197:20: required from 'void _getStellarMatches(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String, seqan::Alloc<> >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/msplazer_main.h:146:27: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 110 | target = source; | ~~~~~~~^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:92: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because 'seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TShapeSpec = seqan::UngappedShape<0>]' 143 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/gustaf_matepairs.h:143:14: required from 'bool _importSequences(const seqan::CharString&, const seqan::CharString&, bool, seqan::StringSet >&, seqan::StringSet >&, seqan::String >&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/msplazer_main.h:71:30: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_fundamental.h:82: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >*; TParam = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >*; TParam = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1348:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TTargetSpec = Alloc<>; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String, Alloc<> >, InfixSegment>, InfixSegment>, Tag >, Alloc<> >&; TSource = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar.h:217:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar.h:614:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/stellar_routines.h:197:20: required from 'void _getStellarMatches(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String, seqan::Alloc<> >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/msplazer_main.h:146:27: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >*; TParam = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >*; TParam = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1354:27: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TTargetSpec = Alloc<>; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String, Alloc<> >, InfixSegment>, InfixSegment>, Tag >, Alloc<> >&; TSource = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar.h:217:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar.h:614:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/stellar_routines.h:197:20: required from 'void _getStellarMatches(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String, seqan::Alloc<> >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/msplazer_main.h:146:27: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/gustaf_matepairs.h:143:14: required from 'bool _importSequences(const seqan::CharString&, const seqan::CharString&, bool, seqan::StringSet >&, seqan::StringSet >&, seqan::String >&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/msplazer_main.h:71:30: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>, InfixSegment>&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TValue2 = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Segment, Alloc<> >, InfixSegment>, InfixSegment>; typename Reference > >::Type = Segment, Alloc<> >, InfixSegment>, InfixSegment>&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_array.h:427:10: required from 'void seqan::assignSource(Gaps >&, const TSequence2&) [with TSequence = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequence2 = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar.h:604:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/stellar_routines.h:197:20: required from 'void _getStellarMatches(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String, seqan::Alloc<> >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/msplazer_main.h:146:27: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment, Alloc<> >, InfixSegment>&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar_extension.h:396:13: required from 'void _fillMatrixBestEndsLeft(TMatrix&, seqan::String&, const seqan::Segment&, const seqan::Segment&, TSeed&, TSeed&, const TScore&) [with TMatrix = seqan::String >; TPossEnd = ExtensionEndPosition; TSequence = seqan::String, seqan::Alloc<> >; TSeed = seqan::Seed >; TScore = seqan::Score >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar_extension.h:697:26: required from 'bool _bestExtension(const TInfix&, const TInfix&, TSeed&, TSeed&, TPos, TPos, const TScore&, TDir, TSize, TEps, TAlign&) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSeed = seqan::Seed >; TPos = long unsigned int; TDir = seqan::ExtensionDirection; TScore = seqan::Score >; TSize = int; TEps = double; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar_extension.h:852:22: required from 'bool _extendAndExtract(const seqan::Align, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment::Type, seqan::InfixSegment>&, const seqan::Segment::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score >; TSequence = seqan::String, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar.h:633:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/stellar_routines.h:197:20: required from 'void _getStellarMatches(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String, seqan::Alloc<> >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/msplazer_main.h:146:27: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1342 | TTargetValue temp_copy(std::forward(_value)); //temp copy because resize could invalidate _value | ^~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1348:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar_extension.h:697:26: required from 'bool _bestExtension(const TInfix&, const TInfix&, TSeed&, TSeed&, TPos, TPos, const TScore&, TDir, TSize, TEps, TAlign&) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSeed = seqan::Seed >; TPos = long unsigned int; TDir = seqan::ExtensionDirection; TScore = seqan::Score >; TSize = int; TEps = double; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar_extension.h:852:22: required from 'bool _extendAndExtract(const seqan::Align, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment::Type, seqan::InfixSegment>&, const seqan::Segment::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score >; TSequence = seqan::String, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar.h:633:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/stellar_routines.h:197:20: required from 'void _getStellarMatches(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String, seqan::Alloc<> >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/msplazer_main.h:146:27: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1354:27: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar_extension.h:697:26: required from 'bool _bestExtension(const TInfix&, const TInfix&, TSeed&, TSeed&, TPos, TPos, const TScore&, TDir, TSize, TEps, TAlign&) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSeed = seqan::Seed >; TPos = long unsigned int; TDir = seqan::ExtensionDirection; TScore = seqan::Score >; TSize = int; TEps = double; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar_extension.h:852:22: required from 'bool _extendAndExtract(const seqan::Align, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment::Type, seqan::InfixSegment>&, const seqan::Segment::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score >; TSequence = seqan::String, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar.h:633:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/stellar_routines.h:197:20: required from 'void _getStellarMatches(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String, seqan::Alloc<> >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/msplazer_main.h:146:27: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned long': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const long unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned long const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ [ 14%] Linking CXX executable ../../bin/gustaf cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/gustaf && /usr/bin/cmake -E cmake_link_script CMakeFiles/gustaf.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/gustaf.dir/gustaf.cpp.o -o ../../bin/gustaf -lrt In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'obtainId' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_idmanager.h:166:15, inlined from 'addVertex' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:525:36, inlined from '_initialiseGraph' at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/msplazer_algorithms.h:241:18: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function '_initialiseGraph': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function 'pop': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'obtainId' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_idmanager.h:166:15, inlined from 'addVertex' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:525:36, inlined from '_createVertices' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_interface.h:704:67, inlined from '_copyGraph' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:274:32, inlined from '_copyGraph' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:300:15, inlined from '__ct ' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:87:23, inlined from '__ct_base ' at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/msplazer.h:328:8: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function '__ct_base ': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'obtainId' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_idmanager.h:166:15, inlined from 'addVertex' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:525:36, inlined from '_createVertices' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_interface.h:704:67, inlined from '_copyGraph' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:276:32, inlined from '_copyGraph' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:300:15, inlined from '__ct ' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:87:23, inlined from '__ct_base ' at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/msplazer.h:328:8: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function '__ct_base ': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from '_goUp' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_wotd.h:915:22, inlined from '_goDown' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_wotd.h:814:22, inlined from 'goDown' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:1880:20, inlined from 'goNextImpl' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:2256:24, inlined from 'goNext' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:1660:19, inlined from 'goNext' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:1655:15, inlined from 'findRepeats' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/repeat_base.h:527:38: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function 'findRepeats': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from '_goUp' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_wotd.h:915:22, inlined from 'goUp' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:2066:18, inlined from 'goNextImpl' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:2257:28, inlined from 'goNext' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:1660:19, inlined from 'goNext' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:1655:15, inlined from 'findRepeats' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/repeat_base.h:527:38: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function 'findRepeats': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'obtainId' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_idmanager.h:166:15, inlined from 'addVertex' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:525:36, inlined from '_createVertices' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_interface.h:704:67, inlined from '_copyGraph.constprop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:274:32: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function '_copyGraph.constprop': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'obtainId' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_idmanager.h:166:15, inlined from 'addVertex' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:525:36, inlined from '_createVertices' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_interface.h:704:67, inlined from '_copyGraph.constprop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:276:32: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function '_copyGraph.constprop': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from '_toText' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function '_toText': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11, inlined from '_getNextBestEndPosition' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/local_alignment_waterman_eggert_impl.h:659:20, inlined from '_localAlignmentNext' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:572:42, inlined from 'nextLocalAlignment' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/local_alignment_enumeration_banded.h:109:35, inlined from 'nextLocalAlignment' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/local_alignment_enumeration_banded.h:121:30, inlined from 'verifySwiftHit' at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar.h:607:30, inlined from 'stellar.isra' at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/../stellar/stellar.h:705:17: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function 'stellar.isra': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 14%] Built target gustaf make -f apps/gustaf/CMakeFiles/gustaf_mate_joining.dir/build.make apps/gustaf/CMakeFiles/gustaf_mate_joining.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/gustaf /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/gustaf/CMakeFiles/gustaf_mate_joining.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/gustaf/CMakeFiles/gustaf_mate_joining.dir/build.make apps/gustaf/CMakeFiles/gustaf_mate_joining.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 14%] Building CXX object apps/gustaf/CMakeFiles/gustaf_mate_joining.dir/join_mates.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/gustaf && /usr/bin/g++ -DSEQAN_APP_VERSION=\"1.0.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/gustaf/CMakeFiles/gustaf_mate_joining.dir/join_mates.cpp.o -MF CMakeFiles/gustaf_mate_joining.dir/join_mates.cpp.o.d -o CMakeFiles/gustaf_mate_joining.dir/join_mates.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/join_mates.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:45, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/join_mates.cpp:41: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/join_mates.cpp:35: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:50, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/bam_sam.h:39, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:55: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/join_mates.cpp:196:26: required from 'bool _importSequences(const seqan::CharString&, const seqan::CharString&, bool, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, seqan::String >&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/join_mates.cpp:437:25: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/join_mates.cpp:40: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/join_mates.cpp:196:26: required from 'bool _importSequences(const seqan::CharString&, const seqan::CharString&, bool, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, seqan::String >&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/join_mates.cpp:437:25: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/join_mates.cpp:196:26: required from 'bool _importSequences(const seqan::CharString&, const seqan::CharString&, bool, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, seqan::String >&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/join_mates.cpp:437:25: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/join_mates.cpp:196:26: required from 'bool _importSequences(const seqan::CharString&, const seqan::CharString&, bool, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, seqan::String >&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/join_mates.cpp:437:25: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/join_mates.cpp:330:27: required from 'int _writeSequences(seqan::CharString&, const seqan::StringSet >&, const seqan::StringSet > >&, const seqan::StringSet > >&) [with TSequence = seqan::String, seqan::Alloc<> >; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/join_mates.cpp:439:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/join_mates.cpp:196:26: required from 'bool _importSequences(const seqan::CharString&, const seqan::CharString&, bool, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, seqan::String >&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/join_mates.cpp:437:25: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/join_mates.cpp:330:27: required from 'int _writeSequences(seqan::CharString&, const seqan::StringSet >&, const seqan::StringSet > >&, const seqan::StringSet > >&) [with TSequence = seqan::String, seqan::Alloc<> >; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf/join_mates.cpp:439:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ [ 15%] Linking CXX executable ../../bin/gustaf_mate_joining cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/gustaf && /usr/bin/cmake -E cmake_link_script CMakeFiles/gustaf_mate_joining.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/gustaf_mate_joining.dir/join_mates.cpp.o -o ../../bin/gustaf_mate_joining -lrt In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from '_toText' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function '_toText': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from '_toHtml' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/tool_doc.h:285:34: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551568' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function '_toHtml': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 15%] Built target gustaf_mate_joining make -f apps/insegt/CMakeFiles/insegt.dir/build.make apps/insegt/CMakeFiles/insegt.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/insegt /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/insegt/CMakeFiles/insegt.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/insegt/CMakeFiles/insegt.dir/build.make apps/insegt/CMakeFiles/insegt.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 15%] Building CXX object apps/insegt/CMakeFiles/insegt.dir/insegt.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/insegt && /usr/bin/g++ -DSEQAN_APP_VERSION=\"1.1.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/insegt/CMakeFiles/insegt.dir/insegt.cpp.o -MF CMakeFiles/insegt.dir/insegt.cpp.o.d -o CMakeFiles/insegt.dir/insegt.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/insegt.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/insegt.cpp:14: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/fstream:40, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/insegt.cpp:1: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/insegt.cpp:16: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/insegt.cpp:17: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:41: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/insegt.cpp:20: /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/create_gff.h: In instantiation of 'void seqan::createReadCountGFF(TFile&, TReadAnnoStore&, FragmentStore&) [with TFile = std::basic_fstream; TReadAnnoStore = String >; TSpec = void; TConfig = FragmentStoreConfig]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/overlap_module.h:889:23: required from 'bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/insegt.cpp:199:18: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/create_gff.h:75:35: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 75 | itAnnoIds = begin(getValue(itCountStore).annoIds); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_iterator.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:86, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/insegt.cpp:12: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::StringSet >, seqan::Owner<> >]' 105 | Iter(Iter const & other_) : | ^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/create_gff.h:76:38: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 76 | itAnnoIdsEnd = end(getValue(itCountStore).annoIds); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::StringSet >, seqan::Owner<> >]' 105 | Iter(Iter const & other_) : | ^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/create_gff.h:100:43: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 100 | itAnnoIds = begin(getValue(itCountStore).annoIds); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::StringSet >, seqan::Owner<> >]' 105 | Iter(Iter const & other_) : | ^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/create_gff.h:101:46: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 101 | itAnnoIdsEnd = end(getValue(itCountStore).annoIds); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::StringSet >, seqan::Owner<> >]' 105 | Iter(Iter const & other_) : | ^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/create_gff.h:134:51: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 134 | itAnnoIds = begin(getValue(itCountStore).annoIds); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::StringSet >, seqan::Owner<> >]' 105 | Iter(Iter const & other_) : | ^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/create_gff.h:135:54: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 135 | itAnnoIdsEnd = end(getValue(itCountStore).annoIds); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::StringSet >, seqan::Owner<> >]' 105 | Iter(Iter const & other_) : | ^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/create_gff.h:169:43: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 169 | itAnnoIds = begin(getValue(itCountStore).annoIds); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::StringSet >, seqan::Owner<> >]' 105 | Iter(Iter const & other_) : | ^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/create_gff.h:170:46: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 170 | itAnnoIdsEnd = end(getValue(itCountStore).annoIds); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::StringSet >, seqan::Owner<> >]' 105 | Iter(Iter const & other_) : | ^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:61: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_annotation.h: In instantiation of 'seqan::Iter > seqan::nodeDown(const Iter >&) [with TFragmentStore = FragmentStore<>; TSpec = void]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/overlap_module.h:48:64: required from 'void seqan::adjustParentEntries(FragmentStore&) [with TSpec = void; TConfig = FragmentStoreConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/overlap_module.h:851:21: required from 'bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/insegt.cpp:199:18: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_annotation.h:853:50: warning: implicitly-declared 'constexpr seqan::Iter, seqan::AnnotationTree<> >::Iter(const seqan::Iter, seqan::AnnotationTree<> >&)' is deprecated [-Wdeprecated-copy] 853 | Iter > tmp(it); | ^~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_annotation.h:272:5: note: because 'seqan::Iter, seqan::AnnotationTree<> >' has user-provided 'const seqan::Iter >& seqan::Iter >::operator=(const seqan::Iter >&) [with TFragmentStore = seqan::FragmentStore<>; TSpec = void]' 272 | operator = (Iter const &_origin) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_annotation.h:855:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::AnnotationTree<> >::Iter(const seqan::Iter, seqan::AnnotationTree<> >&)' is deprecated [-Wdeprecated-copy] 855 | return tmp; | ^~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_annotation.h:272:5: note: because 'seqan::Iter, seqan::AnnotationTree<> >' has user-provided 'const seqan::Iter >& seqan::Iter >::operator=(const seqan::Iter >&) [with TFragmentStore = seqan::FragmentStore<>; TSpec = void]' 272 | operator = (Iter const &_origin) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/insegt.cpp:22: /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/overlap_module.h: In instantiation of 'void seqan::getIdsForRead(TAnnoIds&, FragmentStore&, TIntervalTree&, TIntervals&, unsigned int) [with TAnnoIds = StringSet >, Owner<> >; TSpec = void; TConfig = FragmentStoreConfig; TIntervalTree = IntervalTree; TIntervals = String, Alloc<> >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/fusion.h:754:18: required from 'void seqan::getResults_Fusion(TReadAnnoStore&, TAnnoCountStore&, TTupleCountStore&, TTupleCountStore_Fusion&, FragmentStore&, unsigned int, bool, unsigned int, unsigned int, bool) [with TReadAnnoStore = String >; TAnnoCountStore = String >; TTupleCountStore = String >; TTupleCountStore_Fusion = String >; TSpec = void; TConfig = FragmentStoreConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/overlap_module.h:870:20: required from 'bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/insegt.cpp:199:18: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/overlap_module.h:90:13: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 90 | itR = begin(ids); | ~~~~^~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::StringSet >, seqan::Owner<> >]' 105 | Iter(Iter const & other_) : | ^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/overlap_module.h: In instantiation of 'void seqan::buildAnnoCountStore(TAnnoCountStore&, FragmentStore&, TReadAnnoStore&) [with TAnnoCountStore = String >; TSpec = void; TConfig = FragmentStoreConfig; TReadAnnoStore = String >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/fusion.h:760:21: required from 'void seqan::getResults_Fusion(TReadAnnoStore&, TAnnoCountStore&, TTupleCountStore&, TTupleCountStore_Fusion&, FragmentStore&, unsigned int, bool, unsigned int, unsigned int, bool) [with TReadAnnoStore = String >; TAnnoCountStore = String >; TTupleCountStore = String >; TTupleCountStore_Fusion = String >; TSpec = void; TConfig = FragmentStoreConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/overlap_module.h:870:20: required from 'bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/insegt.cpp:199:18: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/overlap_module.h:536:51: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 536 | itAnnoIds = begin(getValue(itRead).annoIds); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::StringSet >, seqan::Owner<> >]' 105 | Iter(Iter const & other_) : | ^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/overlap_module.h:537:54: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 537 | itAnnoIdsEnd = end(getValue(itRead).annoIds); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::StringSet >, seqan::Owner<> >]' 105 | Iter(Iter const & other_) : | ^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/insegt.cpp:21: /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/fusion.h: In instantiation of 'void seqan::buildTupleCountStore_Fusion(TTupleCountStore&, TTupleCountStore_Fusion&, FragmentStore&, TReadAnnoStore&, unsigned int, bool) [with TTupleCountStore = String >; TTupleCountStore_Fusion = String >; TSpec = void; TConfig = FragmentStoreConfig; TReadAnnoStore = String >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/fusion.h:761:29: required from 'void seqan::getResults_Fusion(TReadAnnoStore&, TAnnoCountStore&, TTupleCountStore&, TTupleCountStore_Fusion&, FragmentStore&, unsigned int, bool, unsigned int, unsigned int, bool) [with TReadAnnoStore = String >; TAnnoCountStore = String >; TTupleCountStore = String >; TTupleCountStore_Fusion = String >; TSpec = void; TConfig = FragmentStoreConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/overlap_module.h:870:20: required from 'bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/insegt.cpp:199:18: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/fusion.h:191:92: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 191 | itSecTuple = begin(tempSecTupleSet); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::StringSet >, seqan::Owner<> >]' 105 | Iter(Iter const & other_) : | ^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/fusion.h:192:95: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 192 | itSecTupleEnd = end(tempSecTupleSet); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::StringSet >, seqan::Owner<> >]' 105 | Iter(Iter const & other_) : | ^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/fusion.h:208:57: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 208 | itTuple = begin(tupleSet); | ~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::StringSet >, seqan::Owner<> >]' 105 | Iter(Iter const & other_) : | ^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/fusion.h:209:60: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 209 | itTupleEnd = end(tupleSet); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::StringSet >, seqan::Owner<> >]' 105 | Iter(Iter const & other_) : | ^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/fusion.h:238:76: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 238 | itSecTuple = begin(secTupleSet); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::StringSet >, seqan::Owner<> >]' 105 | Iter(Iter const & other_) : | ^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/fusion.h:239:79: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 239 | itSecTupleEnd = end(secTupleSet); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::StringSet >, seqan::Owner<> >]' 105 | Iter(Iter const & other_) : | ^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/fusion.h:291:57: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 291 | itTuple = begin(tupleSet); | ~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::StringSet >, seqan::Owner<> >]' 105 | Iter(Iter const & other_) : | ^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/fusion.h:292:60: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 292 | itTupleEnd = end(tupleSet); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::StringSet >, seqan::Owner<> >]' 105 | Iter(Iter const & other_) : | ^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/fusion.h:298:68: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 298 | itSecTuple = begin(secTupleSet); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::StringSet >, seqan::Owner<> >]' 105 | Iter(Iter const & other_) : | ^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/fusion.h:299:71: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 299 | itSecTupleEnd = end(secTupleSet); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::StringSet >, seqan::Owner<> >]' 105 | Iter(Iter const & other_) : | ^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/overlap_module.h: In instantiation of 'void seqan::buildTupleCountStore(TTupleCountStore&, FragmentStore&, TReadAnnoStore&, unsigned int, bool) [with TTupleCountStore = String >; TSpec = void; TConfig = FragmentStoreConfig; TReadAnnoStore = String >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/overlap_module.h:624:22: required from 'void seqan::getResults(TReadAnnoStore&, TAnnoCountStore&, TTupleCountStore&, FragmentStore&, unsigned int, bool, unsigned int, unsigned int, bool) [with TReadAnnoStore = String >; TAnnoCountStore = String >; TTupleCountStore = String >; TSpec = void; TConfig = FragmentStoreConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/overlap_module.h:872:13: required from 'bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/insegt.cpp:199:18: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/overlap_module.h:354:57: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 354 | itTuple = begin(tupleSet); | ~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::StringSet >, seqan::Owner<> >]' 105 | Iter(Iter const & other_) : | ^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/overlap_module.h:355:60: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 355 | itTupleEnd = end(tupleSet); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::StringSet >, seqan::Owner<> >]' 105 | Iter(Iter const & other_) : | ^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/overlap_module.h:384:76: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 384 | itSecTuple = begin(secTupleSet); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::StringSet >, seqan::Owner<> >]' 105 | Iter(Iter const & other_) : | ^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/overlap_module.h:385:79: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 385 | itSecTupleEnd = end(secTupleSet); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::StringSet >, seqan::Owner<> >]' 105 | Iter(Iter const & other_) : | ^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score.h:43, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:45: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/overlap_module.h:838:15: required from 'bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/insegt.cpp:199:18: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/insegt.cpp:13: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/insegt.cpp:19: /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/base.h: In instantiation of 'void seqan::create_nTuple(TStringSet&, FragmentStore&, const TStringSet&, const TId&, const unsigned int&) [with TStringSet = StringSet >, Owner<> >; TSpec = void; TConfig = FragmentStoreConfig; TId = unsigned int]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/fusion.h:122:60: required from 'void seqan::buildTupleCountStore_Fusion(TTupleCountStore&, TTupleCountStore_Fusion&, FragmentStore&, TReadAnnoStore&, unsigned int, bool) [with TTupleCountStore = String >; TTupleCountStore_Fusion = String >; TSpec = void; TConfig = FragmentStoreConfig; TReadAnnoStore = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/fusion.h:761:29: required from 'void seqan::getResults_Fusion(TReadAnnoStore&, TAnnoCountStore&, TTupleCountStore&, TTupleCountStore_Fusion&, FragmentStore&, unsigned int, bool, unsigned int, unsigned int, bool) [with TReadAnnoStore = String >; TAnnoCountStore = String >; TTupleCountStore = String >; TTupleCountStore_Fusion = String >; TSpec = void; TConfig = FragmentStoreConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/overlap_module.h:870:20: required from 'bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/insegt.cpp:199:18: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/base.h:69:23: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 69 | itSet = begin(tempTupleSet); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::StringSet >, seqan::Owner<> >]' 105 | Iter(Iter const & other_) : | ^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/base.h:70:26: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 70 | itSetEnd = end(tempTupleSet); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::StringSet >, seqan::Owner<> >]' 105 | Iter(Iter const & other_) : | ^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/base.h: In instantiation of 'void seqan::create_Tuple(TStringSet&, FragmentStore&, const TStringSet&, const TId&, const unsigned int&) [with TStringSet = StringSet >, Owner<> >; TSpec = void; TConfig = FragmentStoreConfig; TId = unsigned int]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/fusion.h:126:41: required from 'void seqan::buildTupleCountStore_Fusion(TTupleCountStore&, TTupleCountStore_Fusion&, FragmentStore&, TReadAnnoStore&, unsigned int, bool) [with TTupleCountStore = String >; TTupleCountStore_Fusion = String >; TSpec = void; TConfig = FragmentStoreConfig; TReadAnnoStore = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/fusion.h:761:29: required from 'void seqan::getResults_Fusion(TReadAnnoStore&, TAnnoCountStore&, TTupleCountStore&, TTupleCountStore_Fusion&, FragmentStore&, unsigned int, bool, unsigned int, unsigned int, bool) [with TReadAnnoStore = String >; TAnnoCountStore = String >; TTupleCountStore = String >; TTupleCountStore_Fusion = String >; TSpec = void; TConfig = FragmentStoreConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/overlap_module.h:870:20: required from 'bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/insegt.cpp:199:18: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/base.h:97:20: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 97 | it = begin(tempTupleSet); | ~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::StringSet >, seqan::Owner<> >]' 105 | Iter(Iter const & other_) : | ^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/base.h:98:23: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 98 | itEnd = end(tempTupleSet); | ~~~~~~^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, seqan::Owner<> >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::StringSet >, seqan::Owner<> >]' 105 | Iter(Iter const & other_) : | ^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagGff_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/overlap_module.h:848:15: required from 'bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/insegt.cpp:199:18: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:56: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h: In instantiation of 'void seqan::findIntervals(String&, const Graph&, const TPropertyMap&, TValue) [with TSpec = Directed >; TPropertyMap = String, StorePointsOnly>, Alloc<> >; TValue = unsigned int; TCargo = unsigned int]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_intervaltree.h:182:18: required from 'void seqan::findIntervalsForInterval(String&, TIntervalTree&, TInterval&, unsigned int) [with TIntervalTree = IntervalTree; TInterval = Interval; TCargo = unsigned int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/overlap_module.h:85:27: required from 'void seqan::getIdsForRead(TAnnoIds&, FragmentStore&, TIntervalTree&, TIntervals&, unsigned int) [with TAnnoIds = StringSet >, Owner<> >; TSpec = void; TConfig = FragmentStoreConfig; TIntervalTree = IntervalTree; TIntervals = String, Alloc<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/fusion.h:754:18: required from 'void seqan::getResults_Fusion(TReadAnnoStore&, TAnnoCountStore&, TTupleCountStore&, TTupleCountStore_Fusion&, FragmentStore&, unsigned int, bool, unsigned int, unsigned int, bool) [with TReadAnnoStore = String >; TAnnoCountStore = String >; TTupleCountStore = String >; TTupleCountStore_Fusion = String >; TSpec = void; TConfig = FragmentStoreConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/overlap_module.h:870:20: required from 'bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/insegt.cpp:199:18: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:1441:18: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1441 | act_prop = property(pm, act_knot); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:1453:23: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1453 | next_prop = property(pm, targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:1475:27: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1475 | next_prop = property(pm, targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/overlap_module.h:838:15: required from 'bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/insegt.cpp:199:18: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagGtf_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/overlap_module.h:848:15: required from 'bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/insegt.cpp:199:18: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:90: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; TDifference = long int]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:679:35: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, const Tag&) [with T = Gaps, Alloc<> >, InfixSegment>, AnchorGaps, Alloc<> > > >; TPos = long int; TTag = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:661:16: required from 'typename seqan::Iterator::Type>::Type seqan::iter(T&, TPos) [with T = Gaps, Alloc<> >, InfixSegment>, AnchorGaps, Alloc<> > > >; TPos = long int; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_anchor.h:466:20: required from 'void seqan::insertGaps(Gaps >&, TPosition, TCount) [with TSequence = Segment, Alloc<> >, InfixSegment>; TGapAnchors = String, Alloc<> >; TPosition = long int; TCount = long int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2236:27: required from 'void seqan::_alignedReadsInsertGaps(TAlignedReadIter, TAlignedReadIter, TPos, TSize, TReadSeqStore&) [with TAlignedReadIter = AlignedReadStoreElement, void>*; TPos = long int; TSize = long int; TReadSeqStore = StringSet, Alloc<> >, Owner > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2321:40: required from 'void seqan::_twoWayMergeAlignments(TContigGapsGlobal&, TContigGapsPW&, TReadGaps&, TAlignedReadIter, TAlignedReadIter, TAlignedReadIter, TAlignedReadIter, TReadSeqStore&) [with TContigGapsGlobal = Gaps, AnchorGaps, Alloc<> > > >; TContigGapsPW = Gaps, AnchorGaps, Alloc<> >, InfixSegment> > >; TReadGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps, Alloc<> > > >; TAlignedReadIter = AlignedReadStoreElement, void>*; TReadSeqStore = StringSet, Alloc<> >, Owner > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2437:31: required from 'void seqan::convertPairWiseToGlobalAlignment(FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigGapsString = StringSet, Alloc<> >, Owner > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(FragmentStore&, BamIOContext&, TForwardIter&, const TFormat&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&, const FragStoreImportFlags&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/overlap_module.h:839:16: required from 'bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/insegt.cpp:199:18: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 773 | Iter > > result = lhs; | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 775 | return result; | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_fundamental.h:82, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>; TValue2 = const Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:887:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Segment, Alloc<> >, InfixSegment>; TSource = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:135:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2393:29: required from 'void seqan::convertPairWiseToGlobalAlignment(FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigGapsString = StringSet, Alloc<> >, Owner > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(FragmentStore&, BamIOContext&, TForwardIter&, const TFormat&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&, const FragStoreImportFlags&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/overlap_module.h:839:16: required from 'bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/insegt.cpp:199:18: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:96: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>; TValue2 = const Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:887:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Segment, Alloc<> >, InfixSegment>; TSource = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:135:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2394:29: required from 'void seqan::convertPairWiseToGlobalAlignment(FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigGapsString = StringSet, Alloc<> >, Owner > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(FragmentStore&, BamIOContext&, TForwardIter&, const TFormat&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&, const FragStoreImportFlags&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/overlap_module.h:839:16: required from 'bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt/insegt.cpp:199:18: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned int': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned short': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned short const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)int', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int &' to 'seqan::BadLexicalCast::BadLexicalCast(int const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)unsigned int', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast(unsigned int const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)short', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, char*>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int &' to 'seqan::BadLexicalCast::BadLexicalCast(short const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)unsigned short', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, char*>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast(unsigned short const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, char*>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char &' to 'seqan::BadLexicalCast::BadLexicalCast(char const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)unsigned char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, unsigned char, seqan::TagList >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, char*>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char &' to 'seqan::BadLexicalCast::BadLexicalCast(unsigned char const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)signed char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(signed char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(signed char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, signed char>(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'seqan::tagApply >, char*>, unsigned char, seqan::TagList >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char &' to 'seqan::BadLexicalCast::BadLexicalCast(signed char const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)int', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, seqan::String >&>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)short', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, seqan::String >&>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, seqan::String >&>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(short const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, seqan::String >&>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char &' to 'seqan::BadLexicalCast::BadLexicalCast > >(char const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(unsigned char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(unsigned char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned char, seqan::TagList >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, seqan::String >&>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned char const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)signed char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(signed char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(signed char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, seqan::String >&>, signed char>(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned char, seqan::TagList >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char &' to 'seqan::BadLexicalCast::BadLexicalCast > >(signed char const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned short', inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:277:40, inlined from 'seqan::_readOneAlignment, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::String, seqan::Alloc >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent >, seqan::Iter, std::char_traits >, seqan::StreamIterator > >, seqan::Tag >(seqan::FragmentStore >&, seqan::StringSet, seqan::Alloc >, seqan::Owner > >&, seqan::String, seqan::Alloc >&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&, seqan::FragStoreSAMContext > >&, seqan::FragStoreImportFlags const&)void [clone .isra.0]' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:573:15: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_readOneAlignment, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::String, seqan::Alloc >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent >, seqan::Iter, std::char_traits >, seqan::StreamIterator > >, seqan::Tag >(seqan::FragmentStore >&, seqan::StringSet, seqan::Alloc >, seqan::Owner > >&, seqan::String, seqan::Alloc >&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&, seqan::FragStoreSAMContext > >&, seqan::FragStoreImportFlags const&)void [clone .isra.0]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned short const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned int', inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:320:50, inlined from 'seqan::_readOneAlignment, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::String, seqan::Alloc >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent >, seqan::Iter, std::char_traits >, seqan::StreamIterator > >, seqan::Tag >(seqan::FragmentStore >&, seqan::StringSet, seqan::Alloc >, seqan::Owner > >&, seqan::String, seqan::Alloc >&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&, seqan::FragStoreSAMContext > >&, seqan::FragStoreImportFlags const&)void [clone .isra.0]' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:573:15: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_readOneAlignment, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::String, seqan::Alloc >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent >, seqan::Iter, std::char_traits >, seqan::StreamIterator > >, seqan::Tag >(seqan::FragmentStore >&, seqan::StringSet, seqan::Alloc >, seqan::Owner > >&, seqan::String, seqan::Alloc >&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&, seqan::FragStoreSAMContext > >&, seqan::FragStoreImportFlags const&)void [clone .isra.0]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)int', inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:363:43, inlined from 'seqan::_readOneAlignment, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::String, seqan::Alloc >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent >, seqan::Iter, std::char_traits >, seqan::StreamIterator > >, seqan::Tag >(seqan::FragmentStore >&, seqan::StringSet, seqan::Alloc >, seqan::Owner > >&, seqan::String, seqan::Alloc >&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&, seqan::FragStoreSAMContext > >&, seqan::FragStoreImportFlags const&)void [clone .isra.0]' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:573:15: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_readOneAlignment, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::String, seqan::Alloc >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent >, seqan::Iter, std::char_traits >, seqan::StreamIterator > >, seqan::Tag >(seqan::FragmentStore >&, seqan::StringSet, seqan::Alloc >, seqan::Owner > >&, seqan::String, seqan::Alloc >&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&, seqan::FragStoreSAMContext > >&, seqan::FragStoreImportFlags const&)void [clone .isra.0]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ [ 17%] Linking CXX executable ../../bin/insegt cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/insegt && /usr/bin/cmake -E cmake_link_script CMakeFiles/insegt.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/insegt.dir/insegt.cpp.o -o ../../bin/insegt -lrt In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from '_toText' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function '_toText': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 17%] Built target insegt make -f apps/mason2/CMakeFiles/mason_sim.dir/build.make apps/mason2/CMakeFiles/mason_sim.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2/CMakeFiles/mason_sim.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/mason2/CMakeFiles/mason_sim.dir/build.make apps/mason2/CMakeFiles/mason_sim.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 18%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/external_split_merge.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/g++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/mason2/CMakeFiles/mason_sim.dir/external_split_merge.cpp.o -MF CMakeFiles/mason_sim.dir/external_split_merge.cpp.o.d -o CMakeFiles/mason_sim.dir/external_split_merge.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/external_split_merge.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:47, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/external_split_merge.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/external_split_merge.cpp:35: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/external_split_merge.h:49: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:50: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/external_split_merge.h:53: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:49: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:58: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned int': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)int', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int &' to 'seqan::BadLexicalCast::BadLexicalCast(int const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)unsigned int', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast(unsigned int const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)short', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, char*>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int &' to 'seqan::BadLexicalCast::BadLexicalCast(short const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)unsigned short', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, char*>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast(unsigned short const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, char*>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char &' to 'seqan::BadLexicalCast::BadLexicalCast(char const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)unsigned char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, unsigned char, seqan::TagList >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, char*>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char &' to 'seqan::BadLexicalCast::BadLexicalCast(unsigned char const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)signed char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(signed char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(signed char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, signed char>(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'seqan::tagApply >, char*>, unsigned char, seqan::TagList >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char &' to 'seqan::BadLexicalCast::BadLexicalCast(signed char const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)int', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, seqan::String >&>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)short', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, seqan::String >&>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, seqan::String >&>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(short const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned short', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(unsigned short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(unsigned short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, seqan::String >&>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned short const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, seqan::String >&>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char &' to 'seqan::BadLexicalCast::BadLexicalCast > >(char const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(unsigned char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(unsigned char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned char, seqan::TagList >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, seqan::String >&>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned char const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)signed char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(signed char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(signed char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, seqan::String >&>, signed char>(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned char, seqan::TagList >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char &' to 'seqan::BadLexicalCast::BadLexicalCast > >(signed char const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned short', inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:277:40, inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent >, seqan::TagList, void> >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::TagSelector, void> > const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:231:19, inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent >, seqan::TagList, seqan::TagList, void> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::TagSelector, seqan::TagList, void> > > const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:233:19, inlined from 'seqan::readRecord(seqan::BamAlignmentRecord&, seqan::FormattedFile, seqan::Tag, void>&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:241:15, inlined from 'SamJoiner::_loadNext(seqan::BamAlignmentRecord&, unsigned int)' at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/external_split_merge.cpp:171:15: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In member function 'SamJoiner::_loadNext(seqan::BamAlignmentRecord&, unsigned int)': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned short const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned int', inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:293:53, inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent >, seqan::TagList, void> >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::TagSelector, void> > const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:231:19, inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent >, seqan::TagList, seqan::TagList, void> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::TagSelector, seqan::TagList, void> > > const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:233:19, inlined from 'seqan::readRecord(seqan::BamAlignmentRecord&, seqan::FormattedFile, seqan::Tag, void>&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:241:15, inlined from 'SamJoiner::_loadNext(seqan::BamAlignmentRecord&, unsigned int)' at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/external_split_merge.cpp:171:15: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In member function 'SamJoiner::_loadNext(seqan::BamAlignmentRecord&, unsigned int)': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned short', inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:306:44, inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent >, seqan::TagList, void> >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::TagSelector, void> > const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:231:19, inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent >, seqan::TagList, seqan::TagList, void> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::TagSelector, seqan::TagList, void> > > const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:233:19, inlined from 'seqan::readRecord(seqan::BamAlignmentRecord&, seqan::FormattedFile, seqan::Tag, void>&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:241:15, inlined from 'SamJoiner::_loadNext(seqan::BamAlignmentRecord&, unsigned int)' at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/external_split_merge.cpp:171:15: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In member function 'SamJoiner::_loadNext(seqan::BamAlignmentRecord&, unsigned int)': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned short const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned int', inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:320:50, inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent >, seqan::TagList, void> >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::TagSelector, void> > const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:231:19, inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent >, seqan::TagList, seqan::TagList, void> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::TagSelector, seqan::TagList, void> > > const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:233:19, inlined from 'seqan::readRecord(seqan::BamAlignmentRecord&, seqan::FormattedFile, seqan::Tag, void>&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:241:15, inlined from 'SamJoiner::_loadNext(seqan::BamAlignmentRecord&, unsigned int)' at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/external_split_merge.cpp:171:15: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In member function 'SamJoiner::_loadNext(seqan::BamAlignmentRecord&, unsigned int)': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)int', inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:363:43, inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent >, seqan::TagList, void> >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::TagSelector, void> > const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:231:19, inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent >, seqan::TagList, seqan::TagList, void> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::TagSelector, seqan::TagList, void> > > const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:233:19, inlined from 'seqan::readRecord(seqan::BamAlignmentRecord&, seqan::FormattedFile, seqan::Tag, void>&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:241:15, inlined from 'SamJoiner::_loadNext(seqan::BamAlignmentRecord&, unsigned int)' at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/external_split_merge.cpp:171:15: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In member function 'SamJoiner::_loadNext(seqan::BamAlignmentRecord&, unsigned int)': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ [ 18%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/genomic_variants.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/g++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/mason2/CMakeFiles/mason_sim.dir/genomic_variants.cpp.o -MF CMakeFiles/mason_sim.dir/genomic_variants.cpp.o.d -o CMakeFiles/mason_sim.dir/genomic_variants.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/genomic_variants.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:57, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/genomic_variants.h:49, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/genomic_variants.cpp:35: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/debug_test_system.h:150, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:55: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score.h:43, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:45, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:42, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/methylation_levels.h:38, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/genomic_variants.h:52: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:47: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:76: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:91: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:102: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:107: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:110: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:111: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:114: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:121: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:125: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:131: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:188: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_options.h:53, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/methylation_levels.h:44: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:56: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h: In instantiation of 'void seqan::findIntervals(String&, const Graph&, const TPropertyMap&, TValue) [with TSpec = Directed >; TPropertyMap = String, StorePointsOnly>, Alloc<> >; TValue = int; TCargo = GenomicInterval]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:1502:18: required from 'void seqan::findIntervals(String&, const IntervalTree&, TValue2) [with TValue = int; TCargo = GenomicInterval; TValue2 = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/genomic_variants.cpp:718:18: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:1441:18: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1441 | act_prop = property(pm, act_knot); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:1453:23: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1453 | next_prop = property(pm, targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:1475:27: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1475 | next_prop = property(pm, targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:47: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ [ 20%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/mason_options.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/g++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/mason2/CMakeFiles/mason_sim.dir/mason_options.cpp.o -MF CMakeFiles/mason_sim.dir/mason_options.cpp.o.d -o CMakeFiles/mason_sim.dir/mason_options.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_options.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse.h:46, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_options.h:51, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_options.cpp:35: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/debug_test_system.h:150, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse.h:44: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_options.h:53: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:50, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/bam_sam.h:39, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:55: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:58: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ [ 20%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/methylation_levels.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/g++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/mason2/CMakeFiles/mason_sim.dir/methylation_levels.cpp.o -MF CMakeFiles/mason_sim.dir/methylation_levels.cpp.o.d -o CMakeFiles/mason_sim.dir/methylation_levels.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/methylation_levels.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:42, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/methylation_levels.h:38, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/methylation_levels.cpp:35: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_tree.h:65, from /usr/include/c++/13/map:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:58, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:41: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find.h:47, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:46: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:47: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:76: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:91: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:102: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:107: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:110: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:111: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:114: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:121: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:125: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:131: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:188: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_options.h:53, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/methylation_levels.h:44: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:50, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/bam_sam.h:39, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:55: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score.h:43, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find.h:45: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ [ 21%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/simulate_454.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/g++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/mason2/CMakeFiles/mason_sim.dir/simulate_454.cpp.o -MF CMakeFiles/mason_sim.dir/simulate_454.cpp.o.d -o CMakeFiles/mason_sim.dir/simulate_454.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/simulate_454.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:47, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/sequencing.h:43, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/simulate_454.cpp:35: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/stdexcept:39, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/sequencing.h:40: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:50: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/sequencing.h:44: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:42, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/methylation_levels.h:38, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/sequencing.h:49: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:47: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:76: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:91: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:102: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:107: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:110: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:111: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:114: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:121: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:125: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:131: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:188: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:49: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:58: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ [ 21%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/simulate_base.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/g++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/mason2/CMakeFiles/mason_sim.dir/simulate_base.cpp.o -MF CMakeFiles/mason_sim.dir/simulate_base.cpp.o.d -o CMakeFiles/mason_sim.dir/simulate_base.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/simulate_base.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:47, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/sequencing.h:43, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/simulate_base.cpp:35: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/stdexcept:39, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/sequencing.h:40: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:50: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/sequencing.h:44: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:42, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/methylation_levels.h:38, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/sequencing.h:49: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:47: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:76: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:91: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:102: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:107: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:110: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:111: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:114: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:121: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:125: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:131: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:188: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:49: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:58: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ [ 23%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/simulate_genome.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/g++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/mason2/CMakeFiles/mason_sim.dir/simulate_genome.cpp.o -MF CMakeFiles/mason_sim.dir/simulate_genome.cpp.o.d -o CMakeFiles/mason_sim.dir/simulate_genome.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/simulate_genome.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:45, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/simulate_genome.h:45, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/simulate_genome.cpp:35: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/simulate_genome.h:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:50, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/bam_sam.h:39, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:55: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/simulate_genome.h:44: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/simulate_genome.cpp:106:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/simulate_genome.cpp:106:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/simulate_genome.cpp:106:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ [ 23%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/simulate_illumina.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/g++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/mason2/CMakeFiles/mason_sim.dir/simulate_illumina.cpp.o -MF CMakeFiles/mason_sim.dir/simulate_illumina.cpp.o.d -o CMakeFiles/mason_sim.dir/simulate_illumina.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/simulate_illumina.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:47, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/sequencing.h:43, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/simulate_illumina.cpp:35: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/stdexcept:39, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/sequencing.h:40: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:50: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/sequencing.h:44: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:42, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/methylation_levels.h:38, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/sequencing.h:49: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:47: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:76: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:91: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:102: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:107: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:110: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:111: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:114: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:121: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:125: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:131: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:188: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h: In instantiation of 'seqan::ModifiedString::ModifiedString(THost_&&, typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type*) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; THost = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >; TSpec = seqan::Tag; typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type = void; typename seqan::RemoveReference::Type = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >; typename seqan::RemoveReference::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/simulate_illumina.cpp:264:56: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:140:13: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 140 | _host(std::forward(host)), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:96, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:58: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement >; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement >; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:140:13: required from 'seqan::ModifiedString::ModifiedString(THost_&&, typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type*) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; THost = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >; TSpec = seqan::Tag; typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type = void; typename seqan::RemoveReference::Type = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >; typename seqan::RemoveReference::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/simulate_illumina.cpp:264:56: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_iterator.h:80, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:86, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:46: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:98:7: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(const ModifiedString >&, Tag) [with THost = ModifiedString, Alloc<> >, InfixSegment>, ModView > > >; TTagSpec = Standard_; typename Iterator >, const Tag >::Type = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, ModView > > >, Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/simulate_illumina.cpp:193:25: required from 'void {anonymous}::_simulateSequence(TRead&, TRng&, const TFrag&, const TCigarString&) [with TFrag = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >; TRead = seqan::String, seqan::Alloc<> >; TRng = std::mersenne_twister_engine; TCigarString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/simulate_illumina.cpp:264:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:49: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:94: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:512:23: required from 'typename seqan::Iterator >::Type seqan::end(T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:663:20: required from 'typename seqan::Iterator, const seqan::Tag >::Type seqan::end(ModifiedString&, Tag) [with THost = Segment, Alloc<> >, InfixSegment>; TSpec = ModView > >; TTagSpec = Rooted_; typename Iterator, const Tag >::Type = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, ModView > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_reverse.h:458:102: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(const ModifiedString >&, Tag) [with THost = ModifiedString, Alloc<> >, InfixSegment>, ModView > > >; TTagSpec = Standard_; typename Iterator >, const Tag >::Type = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, ModView > > >, Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/simulate_illumina.cpp:193:25: required from 'void {anonymous}::_simulateSequence(TRead&, TRng&, const TFrag&, const TCigarString&) [with TFrag = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >; TRead = seqan::String, seqan::Alloc<> >; TRng = std::mersenne_twister_engine; TCigarString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/simulate_illumina.cpp:264:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:478:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 478 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ [ 25%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/simulate_sanger.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/g++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/mason2/CMakeFiles/mason_sim.dir/simulate_sanger.cpp.o -MF CMakeFiles/mason_sim.dir/simulate_sanger.cpp.o.d -o CMakeFiles/mason_sim.dir/simulate_sanger.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/simulate_sanger.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:47, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/sequencing.h:43, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/simulate_sanger.cpp:35: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/stdexcept:39, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/sequencing.h:40: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:50: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/sequencing.h:44: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:42, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/methylation_levels.h:38, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/sequencing.h:49: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:47: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:76: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:91: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:102: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:107: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:110: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:111: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:114: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:121: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:125: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:131: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:188: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h: In instantiation of 'seqan::ModifiedString::ModifiedString(THost_&&, typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type*) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; THost = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >; TSpec = seqan::Tag; typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type = void; typename seqan::RemoveReference::Type = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >; typename seqan::RemoveReference::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/simulate_sanger.cpp:153:56: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:140:13: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 140 | _host(std::forward(host)), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:96, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:58: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement >; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement >; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:140:13: required from 'seqan::ModifiedString::ModifiedString(THost_&&, typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type*) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; THost = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >; TSpec = seqan::Tag; typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type = void; typename seqan::RemoveReference::Type = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >; typename seqan::RemoveReference::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/simulate_sanger.cpp:153:56: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_iterator.h:80, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:86, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:46: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:98:7: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(const ModifiedString >&, Tag) [with THost = ModifiedString, Alloc<> >, InfixSegment>, ModView > > >; TTagSpec = Standard_; typename Iterator >, const Tag >::Type = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, ModView > > >, Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/simulate_sanger.cpp:59:25: required from 'void {anonymous}::_simulateSequence(TRead&, TRng&, const TFrag&, const TCigarString&) [with TFrag = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >; TRead = seqan::String, seqan::Alloc<> >; TRng = std::mersenne_twister_engine; TCigarString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/simulate_sanger.cpp:153:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:49: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:94: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:512:23: required from 'typename seqan::Iterator >::Type seqan::end(T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:663:20: required from 'typename seqan::Iterator, const seqan::Tag >::Type seqan::end(ModifiedString&, Tag) [with THost = Segment, Alloc<> >, InfixSegment>; TSpec = ModView > >; TTagSpec = Rooted_; typename Iterator, const Tag >::Type = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, ModView > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_reverse.h:458:102: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(const ModifiedString >&, Tag) [with THost = ModifiedString, Alloc<> >, InfixSegment>, ModView > > >; TTagSpec = Standard_; typename Iterator >, const Tag >::Type = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, ModView > > >, Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/simulate_sanger.cpp:59:25: required from 'void {anonymous}::_simulateSequence(TRead&, TRng&, const TFrag&, const TCigarString&) [with TFrag = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >; TRead = seqan::String, seqan::Alloc<> >; TRng = std::mersenne_twister_engine; TCigarString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/simulate_sanger.cpp:153:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:478:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 478 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ [ 25%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/vcf_materialization.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/g++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/mason2/CMakeFiles/mason_sim.dir/vcf_materialization.cpp.o -MF CMakeFiles/mason_sim.dir/vcf_materialization.cpp.o.d -o CMakeFiles/mason_sim.dir/vcf_materialization.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/vcf_materialization.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:45, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/vcf_materialization.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/vcf_materialization.cpp:35: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/stdexcept:39, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/vcf_materialization.h:38: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:50, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/bam_sam.h:39, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:55: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:42, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/methylation_levels.h:38, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/genomic_variants.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/vcf_materialization.h:44: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:47: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:76: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:91: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:102: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:107: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:110: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:111: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:114: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:121: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:125: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:131: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:188: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Vcf_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/vcf_materialization.cpp:167:18: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/vcf_materialization.h:40: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Vcf_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/vcf_materialization.cpp:167:18: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::lexicalCast > >(seqan::String > const&)int': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned int': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ [ 25%] Linking CXX static library libmason_sim.a cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/cmake -P CMakeFiles/mason_sim.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_sim.dir/link.txt --verbose=1 /usr/bin/ar qc libmason_sim.a CMakeFiles/mason_sim.dir/external_split_merge.cpp.o CMakeFiles/mason_sim.dir/genomic_variants.cpp.o CMakeFiles/mason_sim.dir/mason_options.cpp.o CMakeFiles/mason_sim.dir/methylation_levels.cpp.o CMakeFiles/mason_sim.dir/simulate_454.cpp.o CMakeFiles/mason_sim.dir/simulate_base.cpp.o CMakeFiles/mason_sim.dir/simulate_genome.cpp.o CMakeFiles/mason_sim.dir/simulate_illumina.cpp.o CMakeFiles/mason_sim.dir/simulate_sanger.cpp.o CMakeFiles/mason_sim.dir/vcf_materialization.cpp.o /usr/bin/ranlib libmason_sim.a make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 25%] Built target mason_sim make -f apps/mason2/CMakeFiles/mason_genome.dir/build.make apps/mason2/CMakeFiles/mason_genome.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2/CMakeFiles/mason_genome.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/mason2/CMakeFiles/mason_genome.dir/build.make apps/mason2/CMakeFiles/mason_genome.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 25%] Building CXX object apps/mason2/CMakeFiles/mason_genome.dir/mason_genome.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/g++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/mason2/CMakeFiles/mason_genome.dir/mason_genome.cpp.o -MF CMakeFiles/mason_genome.dir/mason_genome.cpp.o.d -o CMakeFiles/mason_genome.dir/mason_genome.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_genome.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse.h:46, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_genome.cpp:40: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/debug_test_system.h:150, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_genome.cpp:37: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/simulate_genome.h:45, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_genome.cpp:42: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:50, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/bam_sam.h:39, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:55: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_genome.cpp:38: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ [ 26%] Linking CXX executable ../../bin/mason_genome cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_genome.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/mason_genome.dir/mason_genome.cpp.o -o ../../bin/mason_genome -lrt -lz libmason_sim.a -lrt -lz In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from '_toText' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function '_toText': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from '_toHtml' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/tool_doc.h:285:34: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551568' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function '_toHtml': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 26%] Built target mason_genome make -f apps/mason2/CMakeFiles/mason_methylation.dir/build.make apps/mason2/CMakeFiles/mason_methylation.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2/CMakeFiles/mason_methylation.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/mason2/CMakeFiles/mason_methylation.dir/build.make apps/mason2/CMakeFiles/mason_methylation.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 28%] Building CXX object apps/mason2/CMakeFiles/mason_methylation.dir/mason_methylation.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/g++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/mason2/CMakeFiles/mason_methylation.dir/mason_methylation.cpp.o -MF CMakeFiles/mason_methylation.dir/mason_methylation.cpp.o.d -o CMakeFiles/mason_methylation.dir/mason_methylation.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_methylation.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:45, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_methylation.cpp:39: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/debug_test_system.h:150, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_methylation.cpp:37: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:50, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/bam_sam.h:39, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:55: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:42, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/methylation_levels.h:38, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_methylation.cpp:43: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:47: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:76: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:91: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:102: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:107: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:110: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:111: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:114: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:121: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:125: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:131: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:188: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_methylation.cpp:38: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_methylation.cpp:143:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_methylation.cpp:143:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_methylation.cpp:143:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ [ 28%] Linking CXX executable ../../bin/mason_methylation cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_methylation.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/mason_methylation.dir/mason_methylation.cpp.o -o ../../bin/mason_methylation -lrt -lz libmason_sim.a -lrt -lz In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from '_toText' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function '_toText': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from '_toHtml' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/tool_doc.h:285:34: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551568' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function '_toHtml': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 28%] Built target mason_methylation make -f apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build.make apps/mason2/CMakeFiles/mason_frag_sequencing.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build.make apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 28%] Building CXX object apps/mason2/CMakeFiles/mason_frag_sequencing.dir/mason_frag_sequencing.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/g++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/mason2/CMakeFiles/mason_frag_sequencing.dir/mason_frag_sequencing.cpp.o -MF CMakeFiles/mason_frag_sequencing.dir/mason_frag_sequencing.cpp.o.d -o CMakeFiles/mason_frag_sequencing.dir/mason_frag_sequencing.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_frag_sequencing.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:45, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_frag_sequencing.cpp:39: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/debug_test_system.h:150, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_frag_sequencing.cpp:37: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:50, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/bam_sam.h:39, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:55: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:42, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/methylation_levels.h:38, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/sequencing.h:49, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_frag_sequencing.cpp:45: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:47: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:76: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:91: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:102: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:107: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:110: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:111: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:114: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:121: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:125: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:131: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:188: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_frag_sequencing.cpp:38: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_frag_sequencing.cpp:142:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_frag_sequencing.cpp:142:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_frag_sequencing.cpp:142:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_frag_sequencing.cpp:153:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_frag_sequencing.cpp:142:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ [ 29%] Linking CXX executable ../../bin/mason_frag_sequencing cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_frag_sequencing.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/mason_frag_sequencing.dir/mason_frag_sequencing.cpp.o -o ../../bin/mason_frag_sequencing -lrt -lz libmason_sim.a -lrt -lz In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from '_toText' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function '_toText': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from '_toHtml' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/tool_doc.h:285:34: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551568' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function '_toHtml': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from 'appendOperation' at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/sequencing.h:379:22: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551600' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function 'appendOperation': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 29%] Built target mason_frag_sequencing make -f apps/mason2/CMakeFiles/mason_variator.dir/build.make apps/mason2/CMakeFiles/mason_variator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2/CMakeFiles/mason_variator.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/mason2/CMakeFiles/mason_variator.dir/build.make apps/mason2/CMakeFiles/mason_variator.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 31%] Building CXX object apps/mason2/CMakeFiles/mason_variator.dir/mason_variator.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/g++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/mason2/CMakeFiles/mason_variator.dir/mason_variator.cpp.o -MF CMakeFiles/mason_variator.dir/mason_variator.cpp.o.d -o CMakeFiles/mason_variator.dir/mason_variator.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_variator.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse.h:46, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_variator.cpp:45: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/random:42, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_variator.cpp:43: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_variator.cpp:47: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:50, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/bam_sam.h:39, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:55: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:42, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_variator.cpp:50: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:47: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:76: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:91: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:102: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:107: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:110: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:111: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:114: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:121: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:125: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:131: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:188: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Vcf_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_variator.cpp:833:18: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:58: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_variator.cpp:884:22: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Vcf_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_variator.cpp:833:18: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_variator.cpp:884:22: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_variator.cpp:884:22: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ [ 31%] Linking CXX executable ../../bin/mason_variator cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_variator.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/mason_variator.dir/mason_variator.cpp.o -o ../../bin/mason_variator -lrt -lz libmason_sim.a -lrt -lz In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from '_toText' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function '_toText': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'obtainId' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_idmanager.h:166:15, inlined from 'addVertex' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:525:36: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function 'addVertex': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from '_toHtml' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/tool_doc.h:285:34: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551568' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function '_toHtml': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from '_simulateFromSizes' at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_variator.cpp:369:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551504' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function '_simulateFromSizes': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 31%] Built target mason_variator make -f apps/mason2/CMakeFiles/mason_materializer.dir/build.make apps/mason2/CMakeFiles/mason_materializer.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2/CMakeFiles/mason_materializer.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/mason2/CMakeFiles/mason_materializer.dir/build.make apps/mason2/CMakeFiles/mason_materializer.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 31%] Building CXX object apps/mason2/CMakeFiles/mason_materializer.dir/mason_materializer.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/g++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/mason2/CMakeFiles/mason_materializer.dir/mason_materializer.cpp.o -MF CMakeFiles/mason_materializer.dir/mason_materializer.cpp.o.d -o CMakeFiles/mason_materializer.dir/mason_materializer.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_materializer.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse.h:46, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_materializer.cpp:45: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/fstream:40, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_materializer.cpp:43: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_materializer.cpp:47: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:50, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/bam_sam.h:39, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:55: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:42, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/methylation_levels.h:38, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/genomic_variants.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/vcf_materialization.h:44, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_materializer.cpp:51: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:47: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:76: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:91: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:102: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:107: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:110: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:111: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:114: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:121: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:125: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:131: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:188: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:58: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_materializer.cpp:103:22: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_materializer.cpp:103:22: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_materializer.cpp:103:22: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ [ 31%] Linking CXX executable ../../bin/mason_materializer cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_materializer.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/mason_materializer.dir/mason_materializer.cpp.o -o ../../bin/mason_materializer -lrt -lz libmason_sim.a -lrt -lz In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from '_toText' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function '_toText': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'obtainId' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_idmanager.h:166:15, inlined from 'addVertex' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:525:36: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function 'addVertex': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 31%] Built target mason_materializer make -f apps/mason2/CMakeFiles/mason_simulator.dir/build.make apps/mason2/CMakeFiles/mason_simulator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2/CMakeFiles/mason_simulator.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/mason2/CMakeFiles/mason_simulator.dir/build.make apps/mason2/CMakeFiles/mason_simulator.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 32%] Building CXX object apps/mason2/CMakeFiles/mason_simulator.dir/mason_simulator.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/g++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/mason2/CMakeFiles/mason_simulator.dir/mason_simulator.cpp.o -MF CMakeFiles/mason_simulator.dir/mason_simulator.cpp.o.d -o CMakeFiles/mason_simulator.dir/mason_simulator.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_simulator.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:45, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/fragment_generation.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_simulator.cpp:43: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_simulator.cpp:40: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:50, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/bam_sam.h:39, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:55: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:42, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/methylation_levels.h:38, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/sequencing.h:49, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_simulator.cpp:44: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:47: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:76: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:91: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:102: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:107: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:110: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:111: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:114: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:121: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:125: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:131: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:188: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/fragment_generation.h:51: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_simulator.cpp:1155:18: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_simulator.cpp:1155:18: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_simulator.cpp:1155:18: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_iterator.h:80, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:86, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:74: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:631:62: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:176:44: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, const AlignConfig&, int, int, const TAlgoTag&) [with TSequenceH = Segment, Alloc<> >, InfixSegment>; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = Tag; TAlgoTag = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:211:31: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, const AlignConfig&, int, int) [with TSequenceH = Segment, Alloc<> >, InfixSegment>; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_simulator.cpp:228:39: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:586:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 586 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:96: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, TIntegral) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag; TIntegral = long int]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:634:69: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:176:44: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, const AlignConfig&, int, int, const TAlgoTag&) [with TSequenceH = Segment, Alloc<> >, InfixSegment>; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = Tag; TAlgoTag = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:211:31: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, const AlignConfig&, int, int) [with TSequenceH = Segment, Alloc<> >, InfixSegment>; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_simulator.cpp:228:39: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:577:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 577 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:650:46: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:176:44: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, const AlignConfig&, int, int, const TAlgoTag&) [with TSequenceH = Segment, Alloc<> >, InfixSegment>; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = Tag; TAlgoTag = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:211:31: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, const AlignConfig&, int, int) [with TSequenceH = Segment, Alloc<> >, InfixSegment>; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_simulator.cpp:228:39: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:744:24: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:176:44: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, const AlignConfig&, int, int, const TAlgoTag&) [with TSequenceH = Segment, Alloc<> >, InfixSegment>; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = Tag; TAlgoTag = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:211:31: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, const AlignConfig&, int, int) [with TSequenceH = Segment, Alloc<> >, InfixSegment>; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_simulator.cpp:228:39: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_fundamental.h:82, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>; TValue2 = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Segment, Alloc<> >, InfixSegment>; typename Reference > >::Type = Segment, Alloc<> >, InfixSegment>&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_array.h:269:34: required from 'void seqan::_reinitArrayGaps(Gaps >&) [with TSequence = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_array.h:155:25: required from 'seqan::Gaps >::Gaps(TSequence&) [with TSequence = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_simulator.cpp:219:57: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:94: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:631:45: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:176:44: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, const AlignConfig&, int, int, const TAlgoTag&) [with TSequenceH = Segment, Alloc<> >, InfixSegment>; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = Tag; TAlgoTag = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:211:31: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, const AlignConfig&, int, int) [with TSequenceH = Segment, Alloc<> >, InfixSegment>; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_simulator.cpp:228:39: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:520:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:650:29: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:176:44: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, const AlignConfig&, int, int, const TAlgoTag&) [with TSequenceH = Segment, Alloc<> >, InfixSegment>; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = Tag; TAlgoTag = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:211:31: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, const AlignConfig&, int, int) [with TSequenceH = Segment, Alloc<> >, InfixSegment>; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_simulator.cpp:228:39: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 486 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:586:12: required from 'seqan::Iter > seqan::operator+(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:631:62: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:176:44: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, const AlignConfig&, int, int, const TAlgoTag&) [with TSequenceH = Segment, Alloc<> >, InfixSegment>; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = Tag; TAlgoTag = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:211:31: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, const AlignConfig&, int, int) [with TSequenceH = Segment, Alloc<> >, InfixSegment>; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_simulator.cpp:228:39: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ [ 32%] Linking CXX executable ../../bin/mason_simulator cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_simulator.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/mason_simulator.dir/mason_simulator.cpp.o -o ../../bin/mason_simulator -lrt -lz libmason_sim.a -lrt -lz In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'obtainId' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_idmanager.h:166:15, inlined from 'addVertex' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:525:36: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function 'addVertex': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from '_toText' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function '_toText': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'obtainId' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_idmanager.h:166:15, inlined from 'addVertex' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:525:36, inlined from '_createVertices' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_interface.h:704:67, inlined from '_copyGraph.constprop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:274:32: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function '_copyGraph.constprop': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'obtainId' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_idmanager.h:166:15, inlined from 'addVertex' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:525:36, inlined from '_createVertices' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_interface.h:704:67, inlined from '_copyGraph.constprop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:276:32: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function '_copyGraph.constprop': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from 'appendOperation' at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/sequencing.h:379:22: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551600' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function 'appendOperation': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 32%] Built target mason_simulator make -f apps/mason2/CMakeFiles/mason_splicing.dir/build.make apps/mason2/CMakeFiles/mason_splicing.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2/CMakeFiles/mason_splicing.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/mason2/CMakeFiles/mason_splicing.dir/build.make apps/mason2/CMakeFiles/mason_splicing.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 34%] Building CXX object apps/mason2/CMakeFiles/mason_splicing.dir/mason_splicing.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/g++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/mason2/CMakeFiles/mason_splicing.dir/mason_splicing.cpp.o -MF CMakeFiles/mason_splicing.dir/mason_splicing.cpp.o.d -o CMakeFiles/mason_splicing.dir/mason_splicing.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_splicing.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse.h:46, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_splicing.cpp:42: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/debug_test_system.h:150, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse.h:44: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_splicing.cpp:44: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:50, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/bam_sam.h:39, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:55: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:42, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/methylation_levels.h:38, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/genomic_variants.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/vcf_materialization.h:44, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_splicing.cpp:49: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:47: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:76: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:91: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:102: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:107: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:110: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:111: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:114: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:121: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:125: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:131: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:188: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:58: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_splicing.cpp:149:22: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagGff_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_splicing.cpp:152:22: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_splicing.cpp:149:22: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagGtf_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_splicing.cpp:152:22: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_splicing.cpp:149:22: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119: In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned int', inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > > >(seqan::GffRecord&, seqan::String >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/gff_io/gff_io_base.h:379:44: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > > >(seqan::GffRecord&, seqan::String >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned int', inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > > >(seqan::GffRecord&, seqan::String >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/gff_io/gff_io_base.h:386:42: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > > >(seqan::GffRecord&, seqan::String >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ [ 34%] Linking CXX executable ../../bin/mason_splicing cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_splicing.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/mason_splicing.dir/mason_splicing.cpp.o -o ../../bin/mason_splicing -lrt -lz libmason_sim.a -lrt -lz In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from '_toText' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function '_toText': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'obtainId' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_idmanager.h:166:15, inlined from 'addVertex' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:525:36, inlined from '_createVertices' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_interface.h:704:67, inlined from '_copyGraph.constprop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:274:32: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function '_copyGraph.constprop': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'obtainId' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_idmanager.h:166:15, inlined from 'addVertex' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:525:36, inlined from '_createVertices' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_interface.h:704:67, inlined from '_copyGraph.constprop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:276:32: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function '_copyGraph.constprop': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'obtainId' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_idmanager.h:166:15, inlined from 'addVertex' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:525:36: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function 'addVertex': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 34%] Built target mason_splicing make -f apps/mason2/CMakeFiles/mason_tests.dir/build.make apps/mason2/CMakeFiles/mason_tests.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2/CMakeFiles/mason_tests.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/mason2/CMakeFiles/mason_tests.dir/build.make apps/mason2/CMakeFiles/mason_tests.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 35%] Building CXX object apps/mason2/CMakeFiles/mason_tests.dir/mason_tests.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/g++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/mason2/CMakeFiles/mason_tests.dir/mason_tests.cpp.o -MF CMakeFiles/mason_tests.dir/mason_tests.cpp.o.d -o CMakeFiles/mason_tests.dir/mason_tests.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_tests.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:47, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/sequencing.h:43, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_tests.cpp:40: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/debug_test_system.h:150, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/mason_tests.cpp:38: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:50: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/sequencing.h:44: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:42, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/methylation_levels.h:38, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2/sequencing.h:49: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:47: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:76: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:91: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:102: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:107: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:110: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:111: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:114: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:121: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:125: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:131: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:188: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:49: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:58: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ [ 35%] Linking CXX executable ../../bin/mason_tests cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_tests.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/mason_tests.dir/mason_tests.cpp.o -o ../../bin/mason_tests -lrt -lz libmason_sim.a -lrt -lz In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'obtainId' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_idmanager.h:166:15, inlined from 'addVertex' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:525:36: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function 'addVertex': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from '_toHtml' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/tool_doc.h:285:34: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551568' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function '_toHtml': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 35%] Built target mason_tests make -f apps/micro_razers/CMakeFiles/micro_razers.dir/build.make apps/micro_razers/CMakeFiles/micro_razers.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/micro_razers /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/micro_razers/CMakeFiles/micro_razers.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/micro_razers/CMakeFiles/micro_razers.dir/build.make apps/micro_razers/CMakeFiles/micro_razers.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 37%] Building CXX object apps/micro_razers/CMakeFiles/micro_razers.dir/micro_razers.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/micro_razers && /usr/bin/g++ -DSEQAN_APP_VERSION=\"1.0.11\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/micro_razers/CMakeFiles/micro_razers.dir/micro_razers.cpp.o -MF CMakeFiles/micro_razers.dir/micro_razers.cpp.o.d -o CMakeFiles/micro_razers.dir/micro_razers.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find.h:44, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:28, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:37: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:25: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score.h:43, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find.h:45: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find.h:47: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:29: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:50, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/bam_sam.h:39, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:55: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:42, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:47: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:76: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:91: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:102: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:107: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:110: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:111: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:114: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:121: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:125: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:131: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:188: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:643:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 643 | struct LessRNoGPos : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:672:49: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 672 | struct LessRNoEdistHLen : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:728:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 728 | struct LessRNoGEndPos : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:760:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 760 | struct LessErrors : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:38: /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/outputFormat.h:126:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 126 | struct LessGPosRNo : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:414:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find.h:43: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:414:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:414:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:414:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h: In instantiation of 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, const TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobalHamming) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet, Alloc<> >, Owner > >; TMyersPatterns = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobalHamming = Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:1717:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2043:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2206:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2265:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:165:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:551:34: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:1359:35: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1359 | return matchVerify(m,inf,rseqNo,readSet,options,MicroRNA()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:96: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:1257:40: note: initializing argument 2 of 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, const RazerSOptions&, MicroRNA) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet, Alloc<> >, Owner > >; TSpec = RazerSSpec<>]' 1257 | Segment inf, // potential match genome region | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h: In instantiation of 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet, Alloc<> >, Owner > >; TMyersPatterns = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:1717:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2043:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2206:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2276:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:165:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:551:34: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:1471:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1471 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:414:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:414:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:222: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1929:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = String, Alloc<> >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:1697:13: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2043:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2206:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2268:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:165:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:551:34: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 752 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:87: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1929:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = String, Alloc<> >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:1697:13: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2043:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2206:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2271:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:165:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:551:34: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 752 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/cyclic_shape.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:68: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:118:25: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:1471:19: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet, Alloc<> >, Owner > >; TMyersPatterns = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:1717:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2043:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2206:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2276:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:165:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:551:34: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:118:25: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:1472:13: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet, Alloc<> >, Owner > >; TMyersPatterns = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:1717:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2043:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2206:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2276:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:165:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:551:34: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1929:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = String, Alloc<> >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:1697:13: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2043:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2206:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2279:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:165:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:551:34: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 752 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1929:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = String, Alloc<> >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:1697:13: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2043:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2206:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2282:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:165:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:551:34: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 752 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:414:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:94: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:385:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:301:30: required from 'seqan::Finder::Finder(THaystack&) [with THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:1440:15: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet, Alloc<> >, Owner > >; TMyersPatterns = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:1717:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2043:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2206:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2276:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:165:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:551:34: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:343:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 343 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_iterator.h:80, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:86, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:74: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_iterator.h:72:7: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(ModifiedString >&, Tag) [with THost = Segment, Alloc<> >, InfixSegment>; TTagSpec = Rooted_; typename Iterator >, const Tag >::Type = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:301:30: required from 'seqan::Finder::Finder(THaystack&) [with THaystack = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:1473:19: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet, Alloc<> >, Owner > >; TMyersPatterns = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:1717:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2043:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2206:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2276:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:165:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:551:34: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_fundamental.h:72, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSource = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; typename DisableIf > >::Type = void]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TValue2 = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; typename Reference > >::Type = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:339:17: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Swift > >; typename Host >::Type = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:1666:31: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2043:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2206:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2265:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:165:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:551:34: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 110 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note: because 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::UngappedShape<0> >; TSpec = seqan::Tag]' 278 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSource = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; typename DisableIf > >::Type = void]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TValue2 = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; typename Reference > >::Type = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:339:17: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Swift > >; typename Host >::Type = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:1666:31: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2043:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2206:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2268:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:165:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:551:34: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 110 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note: because 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>; TSpec = seqan::Tag]' 278 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:229:7: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 229 | class Index > { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' first required here 110 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSource = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; typename DisableIf > >::Type = void]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TValue2 = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; typename Reference > >::Type = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:339:17: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Swift > >; typename Host >::Type = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:1666:31: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2043:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2206:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2271:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:165:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:551:34: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note: because 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::GappedShape > >; TSpec = seqan::Tag]' 278 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:229:7: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 229 | class Index > { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' first required here 110 | target = source; | ~~~~~~~^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find.h:55: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = void; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1603:45: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, void>; TNeedle = Segment, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1636:16: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&, int) [with TFinder = Finder, Alloc<> >, InfixSegment>, void>; TNeedle = Segment, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1654:16: required from 'bool seqan::find(TFinder&, Pattern >&, int) [with TFinder = Finder, Alloc<> >, InfixSegment>, void>; TNeedle = Segment, Alloc<> >, InfixSegment>; TSpec = FindInfix; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:1455:13: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet, Alloc<> >, Owner > >; TMyersPatterns = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:1717:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2043:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2206:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2276:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:165:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:551:34: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:599:38: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 599 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:512:23: required from 'typename seqan::Iterator >::Type seqan::end(T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_reverse.h:469:24: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(ModifiedString >&, Tag) [with THost = Segment, Alloc<> >, InfixSegment>; TTagSpec = Rooted_; typename Iterator >, const Tag >::Type = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:301:30: required from 'seqan::Finder::Finder(THaystack&) [with THaystack = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:1473:19: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet, Alloc<> >, Owner > >; TMyersPatterns = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:1717:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2043:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2206:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2276:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:165:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:551:34: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:478:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 478 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:61: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_iterator.h: In instantiation of 'typename seqan::Container >::Type seqan::container(ModifiedIterator&) [with THost = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; TSpec = Tag; typename Container >::Type = ModifiedString, Alloc<> >, InfixSegment>, Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:599:21: required from 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = ModifiedString, Alloc<> >, InfixSegment>, Tag >; TSpec = void; typename Parameter_::Type = ModifiedString, Alloc<> >, InfixSegment>, Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1603:45: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Tag >, void>; TNeedle = ModifiedString, Alloc<> >, InfixSegment>, Tag >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1636:16: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&, int) [with TFinder = Finder, Alloc<> >, InfixSegment>, Tag >, void>; TNeedle = ModifiedString, Alloc<> >, InfixSegment>, Tag >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1654:16: required from 'bool seqan::find(TFinder&, Pattern >&, int) [with TFinder = Finder, Alloc<> >, InfixSegment>, Tag >, void>; TNeedle = ModifiedString, Alloc<> >, InfixSegment>, Tag >; TSpec = FindPrefix; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:1478:13: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet, Alloc<> >, Owner > >; TMyersPatterns = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:1717:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2043:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2206:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2276:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:165:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:551:34: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_iterator.h:278:16: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 278 | TContainer cont(container(host(me))); | ^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_fundamental.h:82: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>; TValue2 = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:254:13: required from 'void seqan::setHost(Pattern&, TNeedle2&&) [with TNeedle = Segment, Alloc<> >, InfixSegment>; TSpec = Myers; TNeedle2 = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:1971:11: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2206:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/razers.h:2265:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:165:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp:551:34: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119: In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned int', inlined from 'seqan::parseGappedParams >, seqan::RazerSSpec >(seqan::RazerSOptions >&, std::basic_fstream >&, seqan::ParamChooserOptions&)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/paramChooser.h:992:51, inlined from 'seqan::chooseParams >(seqan::RazerSOptions >&, seqan::ParamChooserOptions&)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/paramChooser.h:1285:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::chooseParams >(seqan::RazerSOptions >&, seqan::ParamChooserOptions&)bool': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned int', inlined from 'seqan::parseGappedParams >, seqan::RazerSSpec >(seqan::RazerSOptions >&, std::basic_fstream >&, seqan::ParamChooserOptions&)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/paramChooser.h:1010:66, inlined from 'seqan::chooseParams >(seqan::RazerSOptions >&, seqan::ParamChooserOptions&)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/paramChooser.h:1285:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::chooseParams >(seqan::RazerSOptions >&, seqan::ParamChooserOptions&)bool': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned int', inlined from 'seqan::parseGappedParams >, seqan::RazerSSpec >(seqan::RazerSOptions >&, std::basic_fstream >&, seqan::ParamChooserOptions&)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/paramChooser.h:1020:53, inlined from 'seqan::chooseParams >(seqan::RazerSOptions >&, seqan::ParamChooserOptions&)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers/../razers/paramChooser.h:1285:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::chooseParams >(seqan::RazerSOptions >&, seqan::ParamChooserOptions&)bool': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ [ 37%] Building CXX object apps/micro_razers/CMakeFiles/micro_razers.dir/__/razers/param_tabs.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/micro_razers && /usr/bin/g++ -DSEQAN_APP_VERSION=\"1.0.11\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/micro_razers/CMakeFiles/micro_razers.dir/__/razers/param_tabs.cpp.o -MF CMakeFiles/micro_razers.dir/__/razers/param_tabs.cpp.o.d -o CMakeFiles/micro_razers.dir/__/razers/param_tabs.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/param_tabs.cpp [ 37%] Linking CXX executable ../../bin/micro_razers cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/micro_razers && /usr/bin/cmake -E cmake_link_script CMakeFiles/micro_razers.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/micro_razers.dir/micro_razers.cpp.o CMakeFiles/micro_razers.dir/__/razers/param_tabs.cpp.o -o ../../bin/micro_razers -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 37%] Built target micro_razers make -f apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build.make apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/ngs_roi /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build.make apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 39%] Building CXX object apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/roi_plot_thumbnails.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/ngs_roi && /usr/bin/g++ -DSEQAN_APP_VERSION=\"0.2.12\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/roi_plot_thumbnails.cpp.o -MF CMakeFiles/roi_plot_thumbnails.dir/roi_plot_thumbnails.cpp.o.d -o CMakeFiles/roi_plot_thumbnails.dir/roi_plot_thumbnails.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/roi_plot_thumbnails.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse.h:46, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/roi_plot_thumbnails.cpp:41: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/fstream:40, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/roi_plot_thumbnails.cpp:37: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/roi_io/roi_io_context.h:40, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/roi_io.h:54, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/roi_plot_thumbnails.cpp:46: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:41: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Roi_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/roi_plot_thumbnails.cpp:432:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:58: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Roi_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/roi_plot_thumbnails.cpp:432:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ [ 39%] Linking CXX executable ../../bin/roi_plot_thumbnails cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/ngs_roi && /usr/bin/cmake -E cmake_link_script CMakeFiles/roi_plot_thumbnails.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/roi_plot_thumbnails.dir/roi_plot_thumbnails.cpp.o -o ../../bin/roi_plot_thumbnails -lrt -lz In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from '_toText' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function '_toText': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 39%] Built target roi_plot_thumbnails make -f apps/ngs_roi/CMakeFiles/bam2roi.dir/build.make apps/ngs_roi/CMakeFiles/bam2roi.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/ngs_roi /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/ngs_roi/CMakeFiles/bam2roi.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/ngs_roi/CMakeFiles/bam2roi.dir/build.make apps/ngs_roi/CMakeFiles/bam2roi.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 40%] Building CXX object apps/ngs_roi/CMakeFiles/bam2roi.dir/bam2roi.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/ngs_roi && /usr/bin/g++ -DSEQAN_APP_VERSION=\"0.2.12\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/ngs_roi/CMakeFiles/bam2roi.dir/bam2roi.cpp.o -MF CMakeFiles/bam2roi.dir/bam2roi.cpp.o.d -o CMakeFiles/bam2roi.dir/bam2roi.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/bam2roi.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse.h:46, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/bam2roi.cpp:40: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/fstream:40, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/bam2roi.cpp:37: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:50, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/bam2roi.cpp:45: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/roi_io/roi_io_context.h:40, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/roi_io.h:54, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/roi_builder.h:40, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/bam2roi.cpp:47: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_msa.h:44, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/roi_builder.h:41: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_msa/graph_align_tcoffee_base.h:304:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 304 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus.h:59: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_library.h:88:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 88 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_library.h:99:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::unary_function >, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:42, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/overlap_info_computation.h:38, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus.h:65: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:47: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:76: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:91: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:102: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:107: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:110: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:111: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:114: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:121: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:125: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:131: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:188: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Roi_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/bam2roi.cpp:318:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:58: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Roi_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/bam2roi.cpp:318:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned short': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned short const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned int': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)int', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int &' to 'seqan::BadLexicalCast::BadLexicalCast(int const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)unsigned int', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast(unsigned int const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)short', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, char*>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int &' to 'seqan::BadLexicalCast::BadLexicalCast(short const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)unsigned short', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, char*>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast(unsigned short const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, char*>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char &' to 'seqan::BadLexicalCast::BadLexicalCast(char const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)unsigned char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, unsigned char, seqan::TagList >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, char*>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char &' to 'seqan::BadLexicalCast::BadLexicalCast(unsigned char const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)signed char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(signed char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(signed char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, signed char>(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'seqan::tagApply >, char*>, unsigned char, seqan::TagList >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char &' to 'seqan::BadLexicalCast::BadLexicalCast(signed char const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)int', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, seqan::String >&>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)short', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, seqan::String >&>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, seqan::String >&>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(short const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, seqan::String >&>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char &' to 'seqan::BadLexicalCast::BadLexicalCast > >(char const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(unsigned char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(unsigned char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned char, seqan::TagList >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, seqan::String >&>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned char const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)signed char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(signed char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(signed char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, seqan::String >&>, signed char>(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned char, seqan::TagList >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char &' to 'seqan::BadLexicalCast::BadLexicalCast > >(signed char const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned short', inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void [clone .isra.0]' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:277:40: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void [clone .isra.0]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned short const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned short', inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void [clone .isra.0]' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:306:44: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void [clone .isra.0]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned short const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned int', inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void [clone .isra.0]' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:320:50: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void [clone .isra.0]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)int', inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void [clone .isra.0]' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:363:43: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void [clone .isra.0]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ [ 40%] Building CXX object apps/ngs_roi/CMakeFiles/bam2roi.dir/roi_builder.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/ngs_roi && /usr/bin/g++ -DSEQAN_APP_VERSION=\"0.2.12\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/ngs_roi/CMakeFiles/bam2roi.dir/roi_builder.cpp.o -MF CMakeFiles/bam2roi.dir/roi_builder.cpp.o.d -o CMakeFiles/bam2roi.dir/roi_builder.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/roi_builder.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/roi_io.h:45, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/roi_builder.h:40, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/roi_builder.cpp:35: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/fstream:40, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/roi_builder.h:38: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/roi_io/roi_io_context.h:40, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/roi_io.h:54: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:41: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_msa.h:44, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/roi_builder.h:41: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_msa/graph_align_tcoffee_base.h:304:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 304 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus.h:59: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_library.h:88:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 88 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_library.h:99:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::unary_function >, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:42, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/overlap_info_computation.h:38, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus.h:65: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:47: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:76: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:91: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:102: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:107: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:110: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:111: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:114: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:121: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:125: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:131: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:188: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score.h:43, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:45: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:58: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ [ 42%] Linking CXX executable ../../bin/bam2roi cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/ngs_roi && /usr/bin/cmake -E cmake_link_script CMakeFiles/bam2roi.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/bam2roi.dir/bam2roi.cpp.o CMakeFiles/bam2roi.dir/roi_builder.cpp.o -o ../../bin/bam2roi -lrt -lz In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from '_toText' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function '_toText': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from '_toHtml' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/tool_doc.h:285:34: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551568' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function '_toHtml': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 42%] Built target bam2roi make -f apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build.make apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/ngs_roi /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build.make apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 43%] Building CXX object apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/roi_feature_projection.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/ngs_roi && /usr/bin/g++ -DSEQAN_APP_VERSION=\"0.2.12\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/roi_feature_projection.cpp.o -MF CMakeFiles/roi_feature_projection.dir/roi_feature_projection.cpp.o.d -o CMakeFiles/roi_feature_projection.dir/roi_feature_projection.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/roi_feature_projection.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse.h:46, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/roi_feature_projection.cpp:46: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/roi_feature_projection.cpp:41: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/roi_io/roi_io_context.h:40, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/roi_io.h:54, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/project_interval.h:43, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/roi_feature_projection.cpp:48: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:41: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Roi_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/roi_feature_projection.cpp:876:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/roi_feature_projection.cpp:44: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Roi_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/roi_feature_projection.cpp:876:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119: In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned int', inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > > >(seqan::GffRecord&, seqan::String >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/gff_io/gff_io_base.h:379:44: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > > >(seqan::GffRecord&, seqan::String >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned int', inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > > >(seqan::GffRecord&, seqan::String >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/gff_io/gff_io_base.h:386:42: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > > >(seqan::GffRecord&, seqan::String >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ [ 43%] Building CXX object apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/project_spliced.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/ngs_roi && /usr/bin/g++ -DSEQAN_APP_VERSION=\"0.2.12\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/project_spliced.cpp.o -MF CMakeFiles/roi_feature_projection.dir/project_spliced.cpp.o.d -o CMakeFiles/roi_feature_projection.dir/project_spliced.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/project_spliced.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/gff_io.h:45, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/project_spliced.h:51, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/project_spliced.cpp:36: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/fstream:40, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/project_spliced.h:48: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/roi_io/roi_io_context.h:40, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/roi_io.h:54, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/project_spliced.h:52: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:41: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/gff_io.h:47: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:58: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ [ 45%] Building CXX object apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/project_interval.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/ngs_roi && /usr/bin/g++ -DSEQAN_APP_VERSION=\"0.2.12\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/project_interval.cpp.o -MF CMakeFiles/roi_feature_projection.dir/project_interval.cpp.o.d -o CMakeFiles/roi_feature_projection.dir/project_interval.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/project_interval.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bed_io.h:45, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/project_interval.h:42, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/project_interval.cpp:36: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/fstream:40, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/project_interval.h:38: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/roi_io/roi_io_context.h:40, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/roi_io.h:54, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi/project_interval.h:43: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:41: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:58: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ [ 45%] Linking CXX executable ../../bin/roi_feature_projection cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/ngs_roi && /usr/bin/cmake -E cmake_link_script CMakeFiles/roi_feature_projection.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/roi_feature_projection.dir/roi_feature_projection.cpp.o CMakeFiles/roi_feature_projection.dir/project_spliced.cpp.o CMakeFiles/roi_feature_projection.dir/project_interval.cpp.o -o ../../bin/roi_feature_projection -lrt -lz In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from '_toText' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function '_toText': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 45%] Built target roi_feature_projection make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 46%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/pair_align_global.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib && /usr/bin/g++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=1 -DSUFFIX_GAP_LEFT=1 -DSUFFIX_GAP_RIGHT=1 -DSUFFIX_GAP_TOP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_1111.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_1111.dir/pair_align_global.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:57, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:37: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/debug_test_system.h:150, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:40: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score.h:43, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:45, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:44: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:47: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119: In function 'seqan::lexicalCast > >(seqan::String > const&)int', inlined from 'seqan::read, seqan::Tag, seqan::Iter, std::char_traits >, seqan::StreamIterator > > >(seqan::Score, seqan::Tag > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:140:79, inlined from 'seqan::read, seqan::Tag, seqan::Iter, std::char_traits >, seqan::StreamIterator > > >(seqan::Score, seqan::Tag > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:155:9, inlined from 'seqan::loadScoreMatrix, seqan::Tag >(seqan::Score, seqan::Tag > >&, char const*)bool [clone .isra.0]' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:183:9: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::loadScoreMatrix, seqan::Tag >(seqan::Score, seqan::Tag > >&, char const*)bool [clone .isra.0]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 46%] Built target pair_align_global_1111 make -f apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 46%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/pair_align_lcs.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib && /usr/bin/g++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/pair_align_lcs.cpp.o -MF CMakeFiles/pair_align_lcs.dir/pair_align_lcs.cpp.o.d -o CMakeFiles/pair_align_lcs.dir/pair_align_lcs.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lcs.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:57, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lcs.cpp:37: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/debug_test_system.h:150, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:40: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score.h:43, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:45, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:44: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::Tag; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::Tag; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lcs.cpp:41:20: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:47: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::Tag; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::Tag; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lcs.cpp:41:20: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::Tag; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::Tag; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lcs.cpp:41:20: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::Tag; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::Tag; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lcs.cpp:41:20: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::Tag; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::Tag; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lcs.cpp:41:20: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::Tag; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::Tag; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lcs.cpp:41:20: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::Tag; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::Tag; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lcs.cpp:41:20: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119: In function 'seqan::lexicalCast > >(seqan::String > const&)int', inlined from 'seqan::read, seqan::Tag, seqan::Iter, std::char_traits >, seqan::StreamIterator > > >(seqan::Score, seqan::Tag > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:140:79, inlined from 'seqan::read, seqan::Tag, seqan::Iter, std::char_traits >, seqan::StreamIterator > > >(seqan::Score, seqan::Tag > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:155:9, inlined from 'seqan::loadScoreMatrix, seqan::Tag >(seqan::Score, seqan::Tag > >&, char const*)bool [clone .isra.0]' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:183:9: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::loadScoreMatrix, seqan::Tag >(seqan::Score, seqan::Tag > >&, char const*)bool [clone .isra.0]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 46%] Built target pair_align_lcs make -f apps/pair_align/lib/CMakeFiles/pair_align_local.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_local.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_local.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/pair_align/lib/CMakeFiles/pair_align_local.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_local.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 46%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_local.dir/pair_align_local.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib && /usr/bin/g++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_local.dir/pair_align_local.cpp.o -MF CMakeFiles/pair_align_local.dir/pair_align_local.cpp.o.d -o CMakeFiles/pair_align_local.dir/pair_align_local.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_local.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:57, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_local.cpp:37: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/debug_test_system.h:150, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:40: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score.h:43, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:45, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:44: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::Tag; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::Tag; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_local.cpp:41:20: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:47: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::Tag; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::Tag; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_local.cpp:41:20: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::Tag; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::Tag; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_local.cpp:41:20: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::Tag; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::Tag; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_local.cpp:41:20: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::Tag; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::Tag; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_local.cpp:41:20: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::Tag; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::Tag; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_local.cpp:41:20: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::Tag; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::Tag; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_local.cpp:41:20: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119: In function 'seqan::lexicalCast > >(seqan::String > const&)int', inlined from 'seqan::read, seqan::Tag, seqan::Iter, std::char_traits >, seqan::StreamIterator > > >(seqan::Score, seqan::Tag > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:140:79, inlined from 'seqan::read, seqan::Tag, seqan::Iter, std::char_traits >, seqan::StreamIterator > > >(seqan::Score, seqan::Tag > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:155:9, inlined from 'seqan::loadScoreMatrix, seqan::Tag >(seqan::Score, seqan::Tag > >&, char const*)bool [clone .isra.0]' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:183:9: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::loadScoreMatrix, seqan::Tag >(seqan::Score, seqan::Tag > >&, char const*)bool [clone .isra.0]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 46%] Built target pair_align_local make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 48%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/pair_align_global.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib && /usr/bin/g++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=0 -DSUFFIX_GAP_LEFT=0 -DSUFFIX_GAP_RIGHT=0 -DSUFFIX_GAP_TOP=0 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_0000.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_0000.dir/pair_align_global.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:57, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:37: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/debug_test_system.h:150, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:40: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score.h:43, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:45, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:44: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig<>; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig<>; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:47: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig<>; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig<>; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig<>; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig<>; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig<>; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig<>; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig<>; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig<>; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig<>; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig<>; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig<>; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig<>; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119: In function 'seqan::lexicalCast > >(seqan::String > const&)int', inlined from 'seqan::read, seqan::Tag, seqan::Iter, std::char_traits >, seqan::StreamIterator > > >(seqan::Score, seqan::Tag > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:140:79, inlined from 'seqan::read, seqan::Tag, seqan::Iter, std::char_traits >, seqan::StreamIterator > > >(seqan::Score, seqan::Tag > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:155:9, inlined from 'seqan::loadScoreMatrix, seqan::Tag >(seqan::Score, seqan::Tag > >&, char const*)bool [clone .isra.0]' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:183:9: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::loadScoreMatrix, seqan::Tag >(seqan::Score, seqan::Tag > >&, char const*)bool [clone .isra.0]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 48%] Built target pair_align_global_0000 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 48%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/pair_align_global.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib && /usr/bin/g++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=1 -DSUFFIX_GAP_LEFT=0 -DSUFFIX_GAP_RIGHT=0 -DSUFFIX_GAP_TOP=0 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_0001.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_0001.dir/pair_align_global.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:57, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:37: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/debug_test_system.h:150, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:40: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score.h:43, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:45, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:44: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:47: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119: In function 'seqan::lexicalCast > >(seqan::String > const&)int', inlined from 'seqan::read, seqan::Tag, seqan::Iter, std::char_traits >, seqan::StreamIterator > > >(seqan::Score, seqan::Tag > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:140:79, inlined from 'seqan::read, seqan::Tag, seqan::Iter, std::char_traits >, seqan::StreamIterator > > >(seqan::Score, seqan::Tag > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:155:9, inlined from 'seqan::loadScoreMatrix, seqan::Tag >(seqan::Score, seqan::Tag > >&, char const*)bool [clone .isra.0]' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:183:9: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::loadScoreMatrix, seqan::Tag >(seqan::Score, seqan::Tag > >&, char const*)bool [clone .isra.0]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 48%] Built target pair_align_global_0001 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 50%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/pair_align_global.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib && /usr/bin/g++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=0 -DSUFFIX_GAP_LEFT=0 -DSUFFIX_GAP_RIGHT=1 -DSUFFIX_GAP_TOP=0 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_0010.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_0010.dir/pair_align_global.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:57, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:37: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/debug_test_system.h:150, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:40: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score.h:43, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:45, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:44: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:47: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119: In function 'seqan::lexicalCast > >(seqan::String > const&)int', inlined from 'seqan::read, seqan::Tag, seqan::Iter, std::char_traits >, seqan::StreamIterator > > >(seqan::Score, seqan::Tag > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:140:79, inlined from 'seqan::read, seqan::Tag, seqan::Iter, std::char_traits >, seqan::StreamIterator > > >(seqan::Score, seqan::Tag > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:155:9, inlined from 'seqan::loadScoreMatrix, seqan::Tag >(seqan::Score, seqan::Tag > >&, char const*)bool [clone .isra.0]' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:183:9: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::loadScoreMatrix, seqan::Tag >(seqan::Score, seqan::Tag > >&, char const*)bool [clone .isra.0]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 50%] Built target pair_align_global_0010 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 50%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/pair_align_global.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib && /usr/bin/g++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=1 -DSUFFIX_GAP_LEFT=0 -DSUFFIX_GAP_RIGHT=1 -DSUFFIX_GAP_TOP=0 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_0011.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_0011.dir/pair_align_global.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:57, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:37: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/debug_test_system.h:150, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:40: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score.h:43, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:45, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:44: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:47: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119: In function 'seqan::lexicalCast > >(seqan::String > const&)int', inlined from 'seqan::read, seqan::Tag, seqan::Iter, std::char_traits >, seqan::StreamIterator > > >(seqan::Score, seqan::Tag > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:140:79, inlined from 'seqan::read, seqan::Tag, seqan::Iter, std::char_traits >, seqan::StreamIterator > > >(seqan::Score, seqan::Tag > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:155:9, inlined from 'seqan::loadScoreMatrix, seqan::Tag >(seqan::Score, seqan::Tag > >&, char const*)bool [clone .isra.0]' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:183:9: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::loadScoreMatrix, seqan::Tag >(seqan::Score, seqan::Tag > >&, char const*)bool [clone .isra.0]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 50%] Built target pair_align_global_0011 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 51%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/pair_align_global.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib && /usr/bin/g++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=0 -DSUFFIX_GAP_LEFT=1 -DSUFFIX_GAP_RIGHT=0 -DSUFFIX_GAP_TOP=0 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_0100.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_0100.dir/pair_align_global.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:57, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:37: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/debug_test_system.h:150, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:40: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score.h:43, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:45, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:44: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:47: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119: In function 'seqan::lexicalCast > >(seqan::String > const&)int', inlined from 'seqan::read, seqan::Tag, seqan::Iter, std::char_traits >, seqan::StreamIterator > > >(seqan::Score, seqan::Tag > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:140:79, inlined from 'seqan::read, seqan::Tag, seqan::Iter, std::char_traits >, seqan::StreamIterator > > >(seqan::Score, seqan::Tag > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:155:9, inlined from 'seqan::loadScoreMatrix, seqan::Tag >(seqan::Score, seqan::Tag > >&, char const*)bool [clone .isra.0]' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:183:9: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::loadScoreMatrix, seqan::Tag >(seqan::Score, seqan::Tag > >&, char const*)bool [clone .isra.0]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 51%] Built target pair_align_global_0100 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 51%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/pair_align_global.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib && /usr/bin/g++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=1 -DSUFFIX_GAP_LEFT=1 -DSUFFIX_GAP_RIGHT=0 -DSUFFIX_GAP_TOP=0 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_0101.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_0101.dir/pair_align_global.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:57, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:37: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/debug_test_system.h:150, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:40: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score.h:43, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:45, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:44: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:47: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119: In function 'seqan::lexicalCast > >(seqan::String > const&)int', inlined from 'seqan::read, seqan::Tag, seqan::Iter, std::char_traits >, seqan::StreamIterator > > >(seqan::Score, seqan::Tag > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:140:79, inlined from 'seqan::read, seqan::Tag, seqan::Iter, std::char_traits >, seqan::StreamIterator > > >(seqan::Score, seqan::Tag > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:155:9, inlined from 'seqan::loadScoreMatrix, seqan::Tag >(seqan::Score, seqan::Tag > >&, char const*)bool [clone .isra.0]' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:183:9: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::loadScoreMatrix, seqan::Tag >(seqan::Score, seqan::Tag > >&, char const*)bool [clone .isra.0]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 51%] Built target pair_align_global_0101 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 53%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/pair_align_global.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib && /usr/bin/g++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=0 -DSUFFIX_GAP_LEFT=1 -DSUFFIX_GAP_RIGHT=1 -DSUFFIX_GAP_TOP=0 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_0110.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_0110.dir/pair_align_global.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:57, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:37: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/debug_test_system.h:150, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:40: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score.h:43, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:45, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:44: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:47: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119: In function 'seqan::lexicalCast > >(seqan::String > const&)int', inlined from 'seqan::read, seqan::Tag, seqan::Iter, std::char_traits >, seqan::StreamIterator > > >(seqan::Score, seqan::Tag > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:140:79, inlined from 'seqan::read, seqan::Tag, seqan::Iter, std::char_traits >, seqan::StreamIterator > > >(seqan::Score, seqan::Tag > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:155:9, inlined from 'seqan::loadScoreMatrix, seqan::Tag >(seqan::Score, seqan::Tag > >&, char const*)bool [clone .isra.0]' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:183:9: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::loadScoreMatrix, seqan::Tag >(seqan::Score, seqan::Tag > >&, char const*)bool [clone .isra.0]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 53%] Built target pair_align_global_0110 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 53%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/pair_align_global.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib && /usr/bin/g++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=1 -DSUFFIX_GAP_LEFT=1 -DSUFFIX_GAP_RIGHT=1 -DSUFFIX_GAP_TOP=0 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_0111.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_0111.dir/pair_align_global.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:57, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:37: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/debug_test_system.h:150, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:40: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score.h:43, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:45, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:44: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:47: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119: In function 'seqan::lexicalCast > >(seqan::String > const&)int', inlined from 'seqan::read, seqan::Tag, seqan::Iter, std::char_traits >, seqan::StreamIterator > > >(seqan::Score, seqan::Tag > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:140:79, inlined from 'seqan::read, seqan::Tag, seqan::Iter, std::char_traits >, seqan::StreamIterator > > >(seqan::Score, seqan::Tag > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:155:9, inlined from 'seqan::loadScoreMatrix, seqan::Tag >(seqan::Score, seqan::Tag > >&, char const*)bool [clone .isra.0]' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:183:9: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::loadScoreMatrix, seqan::Tag >(seqan::Score, seqan::Tag > >&, char const*)bool [clone .isra.0]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 53%] Built target pair_align_global_0111 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 53%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/pair_align_global.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib && /usr/bin/g++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=0 -DSUFFIX_GAP_LEFT=0 -DSUFFIX_GAP_RIGHT=0 -DSUFFIX_GAP_TOP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_1000.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_1000.dir/pair_align_global.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:57, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:37: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/debug_test_system.h:150, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:40: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score.h:43, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:45, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:44: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:47: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119: In function 'seqan::lexicalCast > >(seqan::String > const&)int', inlined from 'seqan::read, seqan::Tag, seqan::Iter, std::char_traits >, seqan::StreamIterator > > >(seqan::Score, seqan::Tag > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:140:79, inlined from 'seqan::read, seqan::Tag, seqan::Iter, std::char_traits >, seqan::StreamIterator > > >(seqan::Score, seqan::Tag > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:155:9, inlined from 'seqan::loadScoreMatrix, seqan::Tag >(seqan::Score, seqan::Tag > >&, char const*)bool [clone .isra.0]' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:183:9: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::loadScoreMatrix, seqan::Tag >(seqan::Score, seqan::Tag > >&, char const*)bool [clone .isra.0]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 53%] Built target pair_align_global_1000 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 54%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/pair_align_global.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib && /usr/bin/g++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=1 -DSUFFIX_GAP_LEFT=0 -DSUFFIX_GAP_RIGHT=0 -DSUFFIX_GAP_TOP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_1001.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_1001.dir/pair_align_global.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:57, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:37: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/debug_test_system.h:150, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:40: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score.h:43, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:45, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:44: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:47: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119: In function 'seqan::lexicalCast > >(seqan::String > const&)int', inlined from 'seqan::read, seqan::Tag, seqan::Iter, std::char_traits >, seqan::StreamIterator > > >(seqan::Score, seqan::Tag > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:140:79, inlined from 'seqan::read, seqan::Tag, seqan::Iter, std::char_traits >, seqan::StreamIterator > > >(seqan::Score, seqan::Tag > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:155:9, inlined from 'seqan::loadScoreMatrix, seqan::Tag >(seqan::Score, seqan::Tag > >&, char const*)bool [clone .isra.0]' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:183:9: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::loadScoreMatrix, seqan::Tag >(seqan::Score, seqan::Tag > >&, char const*)bool [clone .isra.0]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 54%] Built target pair_align_global_1001 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 54%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/pair_align_global.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib && /usr/bin/g++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=0 -DSUFFIX_GAP_LEFT=0 -DSUFFIX_GAP_RIGHT=1 -DSUFFIX_GAP_TOP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_1010.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_1010.dir/pair_align_global.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:57, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:37: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/debug_test_system.h:150, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:40: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score.h:43, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:45, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:44: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:47: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119: In function 'seqan::lexicalCast > >(seqan::String > const&)int', inlined from 'seqan::read, seqan::Tag, seqan::Iter, std::char_traits >, seqan::StreamIterator > > >(seqan::Score, seqan::Tag > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:140:79, inlined from 'seqan::read, seqan::Tag, seqan::Iter, std::char_traits >, seqan::StreamIterator > > >(seqan::Score, seqan::Tag > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:155:9, inlined from 'seqan::loadScoreMatrix, seqan::Tag >(seqan::Score, seqan::Tag > >&, char const*)bool [clone .isra.0]' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:183:9: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::loadScoreMatrix, seqan::Tag >(seqan::Score, seqan::Tag > >&, char const*)bool [clone .isra.0]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 54%] Built target pair_align_global_1010 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 56%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/pair_align_global.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib && /usr/bin/g++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=1 -DSUFFIX_GAP_LEFT=0 -DSUFFIX_GAP_RIGHT=1 -DSUFFIX_GAP_TOP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_1011.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_1011.dir/pair_align_global.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:57, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:37: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/debug_test_system.h:150, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:40: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score.h:43, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:45, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:44: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:47: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119: In function 'seqan::lexicalCast > >(seqan::String > const&)int', inlined from 'seqan::read, seqan::Tag, seqan::Iter, std::char_traits >, seqan::StreamIterator > > >(seqan::Score, seqan::Tag > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:140:79, inlined from 'seqan::read, seqan::Tag, seqan::Iter, std::char_traits >, seqan::StreamIterator > > >(seqan::Score, seqan::Tag > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:155:9, inlined from 'seqan::loadScoreMatrix, seqan::Tag >(seqan::Score, seqan::Tag > >&, char const*)bool [clone .isra.0]' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:183:9: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::loadScoreMatrix, seqan::Tag >(seqan::Score, seqan::Tag > >&, char const*)bool [clone .isra.0]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 56%] Built target pair_align_global_1011 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 56%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/pair_align_global.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib && /usr/bin/g++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=0 -DSUFFIX_GAP_LEFT=1 -DSUFFIX_GAP_RIGHT=0 -DSUFFIX_GAP_TOP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_1100.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_1100.dir/pair_align_global.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:57, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:37: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/debug_test_system.h:150, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:40: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score.h:43, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:45, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:44: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:47: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119: In function 'seqan::lexicalCast > >(seqan::String > const&)int', inlined from 'seqan::read, seqan::Tag, seqan::Iter, std::char_traits >, seqan::StreamIterator > > >(seqan::Score, seqan::Tag > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:140:79, inlined from 'seqan::read, seqan::Tag, seqan::Iter, std::char_traits >, seqan::StreamIterator > > >(seqan::Score, seqan::Tag > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:155:9, inlined from 'seqan::loadScoreMatrix, seqan::Tag >(seqan::Score, seqan::Tag > >&, char const*)bool [clone .isra.0]' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:183:9: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::loadScoreMatrix, seqan::Tag >(seqan::Score, seqan::Tag > >&, char const*)bool [clone .isra.0]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 56%] Built target pair_align_global_1100 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 57%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/pair_align_global.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib && /usr/bin/g++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=1 -DSUFFIX_GAP_LEFT=1 -DSUFFIX_GAP_RIGHT=0 -DSUFFIX_GAP_TOP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_1101.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_1101.dir/pair_align_global.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:57, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:37: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/debug_test_system.h:150, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:40: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score.h:43, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:45, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:44: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:47: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119: In function 'seqan::lexicalCast > >(seqan::String > const&)int', inlined from 'seqan::read, seqan::Tag, seqan::Iter, std::char_traits >, seqan::StreamIterator > > >(seqan::Score, seqan::Tag > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:140:79, inlined from 'seqan::read, seqan::Tag, seqan::Iter, std::char_traits >, seqan::StreamIterator > > >(seqan::Score, seqan::Tag > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:155:9, inlined from 'seqan::loadScoreMatrix, seqan::Tag >(seqan::Score, seqan::Tag > >&, char const*)bool [clone .isra.0]' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:183:9: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::loadScoreMatrix, seqan::Tag >(seqan::Score, seqan::Tag > >&, char const*)bool [clone .isra.0]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 57%] Built target pair_align_global_1101 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 57%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/pair_align_global.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib && /usr/bin/g++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=0 -DSUFFIX_GAP_LEFT=1 -DSUFFIX_GAP_RIGHT=1 -DSUFFIX_GAP_TOP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_1110.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_1110.dir/pair_align_global.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:57, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:37: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/debug_test_system.h:150, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:40: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score.h:43, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:45, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:44: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:47: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119: In function 'seqan::lexicalCast > >(seqan::String > const&)int', inlined from 'seqan::read, seqan::Tag, seqan::Iter, std::char_traits >, seqan::StreamIterator > > >(seqan::Score, seqan::Tag > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:140:79, inlined from 'seqan::read, seqan::Tag, seqan::Iter, std::char_traits >, seqan::StreamIterator > > >(seqan::Score, seqan::Tag > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:155:9, inlined from 'seqan::loadScoreMatrix, seqan::Tag >(seqan::Score, seqan::Tag > >&, char const*)bool [clone .isra.0]' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:183:9: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::loadScoreMatrix, seqan::Tag >(seqan::Score, seqan::Tag > >&, char const*)bool [clone .isra.0]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 57%] Built target pair_align_global_1110 make -f apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 59%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/pair_align_lib.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib && /usr/bin/g++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/pair_align_lib.cpp.o -MF CMakeFiles/pair_align_lib.dir/pair_align_lib.cpp.o.d -o CMakeFiles/pair_align_lib.dir/pair_align_lib.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:57, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.cpp:37: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/debug_test_system.h:150, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:40: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score.h:43, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:45, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:44: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 59%] Linking CXX static library libpair_align_lib.a cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib && /usr/bin/cmake -P CMakeFiles/pair_align_lib.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/pair_align_lib.dir/link.txt --verbose=1 /usr/bin/ar qc libpair_align_lib.a CMakeFiles/pair_align_lib.dir/pair_align_lib.cpp.o CMakeFiles/pair_align_lcs.dir/pair_align_lcs.cpp.o CMakeFiles/pair_align_local.dir/pair_align_local.cpp.o CMakeFiles/pair_align_global_0000.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_0001.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_0010.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_0011.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_0100.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_0101.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_0110.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_0111.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_1000.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_1001.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_1010.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_1011.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_1100.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_1101.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_1110.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_1111.dir/pair_align_global.cpp.o /usr/bin/ranlib libpair_align_lib.a make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 59%] Built target pair_align_lib make -f apps/pair_align/CMakeFiles/pair_align.dir/build.make apps/pair_align/CMakeFiles/pair_align.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/CMakeFiles/pair_align.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/pair_align/CMakeFiles/pair_align.dir/build.make apps/pair_align/CMakeFiles/pair_align.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 60%] Building CXX object apps/pair_align/CMakeFiles/pair_align.dir/pair_align.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align && /usr/bin/g++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/CMakeFiles/pair_align.dir/pair_align.cpp.o -MF CMakeFiles/pair_align.dir/pair_align.cpp.o.d -o CMakeFiles/pair_align.dir/pair_align.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/pair_align.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:57, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/pair_align.cpp:16: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/debug_test_system.h:150, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:40: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score.h:43, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:45, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib/pair_align_lib.h:44: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 60%] Linking CXX executable ../../bin/pair_align cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align && /usr/bin/cmake -E cmake_link_script CMakeFiles/pair_align.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/pair_align.dir/pair_align.cpp.o -o ../../bin/pair_align lib/libpair_align_lib.a -lrt In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from '_toText' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function '_toText': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'obtainId' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_idmanager.h:166:15, inlined from 'addVertex.isra' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:525:36: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function 'addVertex.isra': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'obtainId' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_idmanager.h:166:15, inlined from 'addVertex' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_undirected.h:357:36, inlined from 'addVertex' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align/graph_impl_align.h:500:37: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function 'addVertex': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'obtainId' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_idmanager.h:166:15, inlined from 'addVertex' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_undirected.h:357:36, inlined from 'addVertex.constprop.isra' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align/graph_impl_align.h:500:37: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function 'addVertex.constprop.isra': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 60%] Built target pair_align make -f apps/param_chooser/CMakeFiles/param_chooser.dir/build.make apps/param_chooser/CMakeFiles/param_chooser.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/param_chooser /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/param_chooser/CMakeFiles/param_chooser.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/param_chooser/CMakeFiles/param_chooser.dir/build.make apps/param_chooser/CMakeFiles/param_chooser.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 62%] Building CXX object apps/param_chooser/CMakeFiles/param_chooser.dir/param_chooser.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/param_chooser && /usr/bin/g++ -DSEQAN_APP_VERSION=\"0.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/param_chooser/CMakeFiles/param_chooser.dir/param_chooser.cpp.o -MF CMakeFiles/param_chooser.dir/param_chooser.cpp.o.d -o CMakeFiles/param_chooser.dir/param_chooser.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/param_chooser.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/param_chooser.cpp:37: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/param_chooser.cpp:32: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:33, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/param_chooser.cpp:39: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:50, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/bam_sam.h:39, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:55: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:42, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:30, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:34: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:47: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:76: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:91: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:102: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:107: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:110: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:111: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:114: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:121: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:125: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:131: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:188: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:676:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 676 | struct LessRNoGPos : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:704:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 704 | struct LessRNoGEndPos : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:730:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 730 | struct LessErrors : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:748:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 748 | struct LessSplicedScore : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:770:45: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 770 | struct LessSplicedScoreGPos : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:32: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:604:11: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/param_chooser.cpp:36: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:604:11: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:604:11: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:604:11: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:604:11: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h: In instantiation of 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet, Alloc<> >, Owner > >; TMyersPatterns = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec; SwiftSemiGlobal = Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:1658:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2076:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2150:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2250:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:712:13: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:1079:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/param_chooser.cpp:339:21: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:1430:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1430 | TGenomeInfixRev infRev(inf); | ^~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:96: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:604:11: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:604:11: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:222: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1929:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = String, Alloc<> >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:1653:13: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2076:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2150:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2242:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:712:13: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:1079:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/param_chooser.cpp:339:21: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 752 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:87: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1929:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = String, Alloc<> >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:1653:13: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2076:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2150:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2245:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:712:13: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:1079:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/param_chooser.cpp:339:21: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 752 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/cyclic_shape.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:68: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:118:25: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:1430:19: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet, Alloc<> >, Owner > >; TMyersPatterns = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:1658:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2076:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2150:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2250:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:712:13: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:1079:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/param_chooser.cpp:339:21: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:118:25: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:1431:13: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet, Alloc<> >, Owner > >; TMyersPatterns = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:1658:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2076:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2150:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2250:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:712:13: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:1079:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/param_chooser.cpp:339:21: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1929:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = String, Alloc<> >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:1653:13: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2076:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2150:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2253:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:712:13: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:1079:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/param_chooser.cpp:339:21: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 752 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1929:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = String, Alloc<> >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:1653:13: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2076:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2150:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2256:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:712:13: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:1079:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/param_chooser.cpp:339:21: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 752 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:94: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:385:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:301:30: required from 'seqan::Finder::Finder(THaystack&) [with THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:1399:15: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet, Alloc<> >, Owner > >; TMyersPatterns = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:1658:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2076:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2150:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2250:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:712:13: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:1079:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/param_chooser.cpp:339:21: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:343:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 343 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_iterator.h:80, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:86, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:74: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_iterator.h:72:7: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(ModifiedString >&, Tag) [with THost = Segment, Alloc<> >, InfixSegment>; TTagSpec = Rooted_; typename Iterator >, const Tag >::Type = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:301:30: required from 'seqan::Finder::Finder(THaystack&) [with THaystack = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:1432:19: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet, Alloc<> >, Owner > >; TMyersPatterns = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:1658:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2076:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2150:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2250:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:712:13: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:1079:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/param_chooser.cpp:339:21: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_fundamental.h:72, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSource = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; typename DisableIf > >::Type = void]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TValue2 = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; typename Reference > >::Type = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:339:17: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Swift > >; typename Host >::Type = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:1625:31: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2076:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2150:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2239:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:712:13: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:1079:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/param_chooser.cpp:339:21: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 110 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note: because 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::UngappedShape<0> >; TSpec = seqan::Tag]' 278 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSource = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; typename DisableIf > >::Type = void]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TValue2 = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; typename Reference > >::Type = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:339:17: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Swift > >; typename Host >::Type = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:1625:31: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2076:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2150:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2242:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:712:13: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:1079:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/param_chooser.cpp:339:21: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 110 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note: because 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>; TSpec = seqan::Tag]' 278 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:229:7: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 229 | class Index > { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' first required here 110 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSource = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; typename DisableIf > >::Type = void]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TValue2 = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; typename Reference > >::Type = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:339:17: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Swift > >; typename Host >::Type = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:1625:31: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2076:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2150:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2245:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:712:13: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:1079:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/param_chooser.cpp:339:21: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note: because 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::GappedShape > >; TSpec = seqan::Tag]' 278 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:229:7: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 229 | class Index > { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' first required here 110 | target = source; | ~~~~~~~^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find.h:55, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:28: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = void; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1603:45: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, void>; TNeedle = Segment, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1636:16: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&, int) [with TFinder = Finder, Alloc<> >, InfixSegment>, void>; TNeedle = Segment, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1654:16: required from 'bool seqan::find(TFinder&, Pattern >&, int) [with TFinder = Finder, Alloc<> >, InfixSegment>, void>; TNeedle = Segment, Alloc<> >, InfixSegment>; TSpec = FindInfix; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:1414:13: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet, Alloc<> >, Owner > >; TMyersPatterns = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:1658:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2076:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2150:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2250:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:712:13: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:1079:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/param_chooser.cpp:339:21: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:599:38: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 599 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:512:23: required from 'typename seqan::Iterator >::Type seqan::end(T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_reverse.h:469:24: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(ModifiedString >&, Tag) [with THost = Segment, Alloc<> >, InfixSegment>; TTagSpec = Rooted_; typename Iterator >, const Tag >::Type = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:301:30: required from 'seqan::Finder::Finder(THaystack&) [with THaystack = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:1432:19: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet, Alloc<> >, Owner > >; TMyersPatterns = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:1658:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2076:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2150:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2250:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:712:13: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:1079:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/param_chooser.cpp:339:21: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:478:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 478 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:61: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_iterator.h: In instantiation of 'typename seqan::Container >::Type seqan::container(ModifiedIterator&) [with THost = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; TSpec = Tag; typename Container >::Type = ModifiedString, Alloc<> >, InfixSegment>, Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:599:21: required from 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = ModifiedString, Alloc<> >, InfixSegment>, Tag >; TSpec = void; typename Parameter_::Type = ModifiedString, Alloc<> >, InfixSegment>, Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1603:45: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Tag >, void>; TNeedle = ModifiedString, Alloc<> >, InfixSegment>, Tag >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1636:16: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&, int) [with TFinder = Finder, Alloc<> >, InfixSegment>, Tag >, void>; TNeedle = ModifiedString, Alloc<> >, InfixSegment>, Tag >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1654:16: required from 'bool seqan::find(TFinder&, Pattern >&, int) [with TFinder = Finder, Alloc<> >, InfixSegment>, Tag >, void>; TNeedle = ModifiedString, Alloc<> >, InfixSegment>, Tag >; TSpec = FindPrefix; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:1437:13: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2076:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2150:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2250:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:712:13: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:1079:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/param_chooser.cpp:339:21: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_iterator.h:278:16: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 278 | TContainer cont(container(host(me))); | ^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_fundamental.h:82: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>; TValue2 = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Segment, Alloc<> >, InfixSegment>; typename Reference > >::Type = Segment, Alloc<> >, InfixSegment>&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:840:14: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2047:11: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2150:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:2239:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet, Alloc<> >, Owner > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:712:13: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:1079:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/param_chooser.cpp:339:21: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned int': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned int', inlined from 'seqan::parseGappedParams >, seqan::RazerSSpec >(seqan::RazerSOptions >&, std::basic_fstream >&, seqan::ParamChooserOptions&)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:829:51, inlined from 'seqan::chooseParams >(seqan::RazerSOptions >&, seqan::ParamChooserOptions&)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:1107:20, inlined from 'main' at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/param_chooser.cpp:339:21: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'main': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ [ 62%] Linking CXX executable ../../bin/param_chooser cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/param_chooser && /usr/bin/cmake -E cmake_link_script CMakeFiles/param_chooser.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/param_chooser.dir/param_chooser.cpp.o -o ../../bin/param_chooser -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 62%] Built target param_chooser make -f apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build.make apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/param_chooser /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build.make apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 62%] Building CXX object apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/test_param_chooser.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/param_chooser && /usr/bin/g++ -DSEQAN_APP_VERSION=\"0.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/test_param_chooser.cpp.o -MF CMakeFiles/test_funcs_param_chooser.dir/test_param_chooser.cpp.o.d -o CMakeFiles/test_funcs_param_chooser.dir/test_param_chooser.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/test_param_chooser.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/test_param_chooser.cpp:45: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/test_param_chooser.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:33, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/test_param_chooser.cpp:47: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:50, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/bam_sam.h:39, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:55: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:42, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:30, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:34: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:47: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:76: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:91: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:102: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:107: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:110: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:111: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:114: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:121: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:125: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:131: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:188: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:676:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 676 | struct LessRNoGPos : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:704:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 704 | struct LessRNoGEndPos : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:730:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 730 | struct LessErrors : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:748:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 748 | struct LessSplicedScore : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:770:45: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 770 | struct LessSplicedScoreGPos : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:32: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:604:11: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:58: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:604:11: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:604:11: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:604:11: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:604:11: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:604:11: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/razers.h:604:11: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119: In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned int', inlined from 'seqan::parseGappedParams, std::allocator >, seqan::RazerSSpec >(seqan::RazerSOptions >&, std::__cxx11::basic_stringstream, std::allocator >&, seqan::ParamChooserOptions&)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:829:51: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::parseGappedParams, std::allocator >, seqan::RazerSSpec >(seqan::RazerSOptions >&, std::__cxx11::basic_stringstream, std::allocator >&, seqan::ParamChooserOptions&)bool': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned int', inlined from 'seqan::parseGappedParams, std::allocator >, seqan::RazerSSpec >(seqan::RazerSOptions >&, std::__cxx11::basic_stringstream, std::allocator >&, seqan::ParamChooserOptions&)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:847:66: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::parseGappedParams, std::allocator >, seqan::RazerSSpec >(seqan::RazerSOptions >&, std::__cxx11::basic_stringstream, std::allocator >&, seqan::ParamChooserOptions&)bool': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned int', inlined from 'seqan::parseGappedParams, std::allocator >, seqan::RazerSSpec >(seqan::RazerSOptions >&, std::__cxx11::basic_stringstream, std::allocator >&, seqan::ParamChooserOptions&)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser/../splazers/paramChooser.h:857:53: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::parseGappedParams, std::allocator >, seqan::RazerSSpec >(seqan::RazerSOptions >&, std::__cxx11::basic_stringstream, std::allocator >&, seqan::ParamChooserOptions&)bool': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ [ 64%] Linking CXX executable ../../bin/test_funcs_param_chooser cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/param_chooser && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_funcs_param_chooser.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_funcs_param_chooser.dir/test_param_chooser.cpp.o -o ../../bin/test_funcs_param_chooser -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 64%] Built target test_funcs_param_chooser make -f apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build.make apps/rabema/CMakeFiles/rabema_prepare_sam.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rabema /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build.make apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 64%] Building CXX object apps/rabema/CMakeFiles/rabema_prepare_sam.dir/prepare_sam.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rabema && /usr/bin/g++ -DSEQAN_APP_VERSION=\"1.2.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/rabema/CMakeFiles/rabema_prepare_sam.dir/prepare_sam.cpp.o -MF CMakeFiles/rabema_prepare_sam.dir/prepare_sam.cpp.o.d -o CMakeFiles/rabema_prepare_sam.dir/prepare_sam.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/prepare_sam.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:47, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/prepare_sam.cpp:29: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/prepare_sam.cpp:27: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:50: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:49: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:58: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned short': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned short const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned int': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)int', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int &' to 'seqan::BadLexicalCast::BadLexicalCast(int const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)unsigned int', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast(unsigned int const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)short', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, char*>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int &' to 'seqan::BadLexicalCast::BadLexicalCast(short const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)unsigned short', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, char*>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast(unsigned short const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, char*>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char &' to 'seqan::BadLexicalCast::BadLexicalCast(char const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)unsigned char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, unsigned char, seqan::TagList >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, char*>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char &' to 'seqan::BadLexicalCast::BadLexicalCast(unsigned char const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)signed char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(signed char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(signed char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, signed char>(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'seqan::tagApply >, char*>, unsigned char, seqan::TagList >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char &' to 'seqan::BadLexicalCast::BadLexicalCast(signed char const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)int', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, seqan::String >&>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)short', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, seqan::String >&>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, seqan::String >&>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(short const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, seqan::String >&>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char &' to 'seqan::BadLexicalCast::BadLexicalCast > >(char const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(unsigned char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(unsigned char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned char, seqan::TagList >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, seqan::String >&>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned char const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)signed char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(signed char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(signed char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, seqan::String >&>, signed char>(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned char, seqan::TagList >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char &' to 'seqan::BadLexicalCast::BadLexicalCast > >(signed char const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned short', inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void [clone .isra.0]' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:277:40: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void [clone .isra.0]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned short const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned short', inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void [clone .isra.0]' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:306:44: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void [clone .isra.0]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned short const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned int', inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void [clone .isra.0]' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:320:50: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void [clone .isra.0]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)int', inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void [clone .isra.0]' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:363:43: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void [clone .isra.0]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ [ 65%] Linking CXX executable ../../bin/rabema_prepare_sam cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rabema && /usr/bin/cmake -E cmake_link_script CMakeFiles/rabema_prepare_sam.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/rabema_prepare_sam.dir/prepare_sam.cpp.o -o ../../bin/rabema_prepare_sam -lrt -lz In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from '_toText' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function '_toText': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 65%] Built target rabema_prepare_sam make -f apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build.make apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rabema /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build.make apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 67%] Building CXX object apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/rabema_build_gold_standard.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rabema && /usr/bin/g++ -DSEQAN_APP_VERSION=\"1.2.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/rabema_build_gold_standard.cpp.o -MF CMakeFiles/rabema_build_gold_standard.dir/rabema_build_gold_standard.cpp.o.d -o CMakeFiles/rabema_build_gold_standard.dir/rabema_build_gold_standard.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/rabema_build_gold_standard.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse.h:46, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/rabema_build_gold_standard.cpp:35: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/fstream:40, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/rabema_build_gold_standard.cpp:31: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:50, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/rabema_build_gold_standard.cpp:36: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/rabema_build_gold_standard.cpp:39: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/rabema_build_gold_standard.cpp:42: /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/curve_smoothing.h:105:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 105 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:58: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:118:25: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/curve_smoothing.h:254:100: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:96: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_iterator.h:80, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:86, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse.h:44: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::InfixSegment>; TIterator = WeightedMatch*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_iterator.h:72:7: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(ModifiedString >&, Tag) [with THost = Segment, InfixSegment>; TTagSpec = Standard_; typename Iterator >, const Tag >::Type = ModifiedIterator, InfixSegment>, AdaptorIterator > >, Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/curve_smoothing.h:257:52: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:94: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(T&, Rooted) [with T = Segment, InfixSegment>; typename Iterator >::Type = Iter, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:512:23: required from 'typename seqan::Iterator >::Type seqan::end(T&, Tag) [with T = Segment, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, InfixSegment>, AdaptorIterator > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_reverse.h:469:24: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(ModifiedString >&, Tag) [with THost = Segment, InfixSegment>; TTagSpec = Standard_; typename Iterator >, const Tag >::Type = ModifiedIterator, InfixSegment>, AdaptorIterator > >, Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/curve_smoothing.h:257:52: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:478:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 478 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::InfixSegment>; TIterator = WeightedMatch*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment, InfixSegment>; typename Iterator >::Type = Iter, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:385:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(T&, Tag) [with T = Segment, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment, InfixSegment>; typename Iterator >::Type = Iter, InfixSegment>, AdaptorIterator > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_reverse.h:513:97: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::end(ModifiedString >&, Tag) [with THost = Segment, InfixSegment>; TTagSpec = Standard_; typename Iterator >, const Tag >::Type = ModifiedIterator, InfixSegment>, AdaptorIterator > >, Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/curve_smoothing.h:257:91: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:343:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 343 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::InfixSegment>; TIterator = WeightedMatch*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:76: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_reverse.h: In instantiation of 'seqan::ModifiedString > seqan::reverseString(THost&) [with THost = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_begin.h:212:61: required from 'static void seqan::FindBeginImpl_ >::_findBeginInit(TPattern&, TNeedle&) [with TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Myers >; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THasState = seqan::True]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_begin.h:330:65: required from 'void seqan::_findBeginInit(TPattern&, TNeedle&) [with TPattern = Pattern, Alloc<> >, InfixSegment>, Myers >; TNeedle = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:558:19: required from 'void seqan::_patternFirstInit(Pattern >&, TNeedle2&) [with TNeedle = Segment, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers; TNeedle2 = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:660:22: required from 'void seqan::_reinitPattern(Pattern >&) [with TNeedle = Segment, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:255:19: required from 'void seqan::setHost(Pattern&, TNeedle2&&) [with TNeedle = Segment, Alloc<> >, InfixSegment>; TSpec = Myers; TNeedle2 = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:452:16: required from 'seqan::Pattern >::Pattern(TNeedle2&&, int) [with TNeedle2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/find_myers_ukkonen_reads.h:94:9: required from 'seqan::Pattern >::Pattern(TNeedle2&, int) [with TNeedle2 = seqan::String, seqan::Alloc<> >; TNeedle = seqan::String, seqan::Alloc<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/rabema_build_gold_standard.cpp:403:41: required from 'void buildErrorCurvePoints(seqan::String&, int&, TContigSeq&, size_t, bool, TReadSeq&, size_t, size_t, const TReadNames&, bool, const TPatternSpec&) [with TContigSeq = seqan::String, seqan::Alloc<> >; TReadSeq = seqan::String, seqan::Alloc<> >; TPatternSpec = seqan::Tag; TReadNames = seqan::StringSet > >; size_t = long unsigned int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/rabema_build_gold_standard.cpp:899:34: required from 'int matchesToErrorFunction(TErrorCurves&, seqan::String&, seqan::BamFileIn&, seqan::StringSet > >&, const seqan::StringSet > >&, const seqan::FaiIndex&, const BuildGoldStandardOptions&, const TPatternSpec&) [with TPatternSpec = seqan::Tag; TErrorCurves = std::map >; seqan::BamFileIn = seqan::FormattedFile, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/rabema_build_gold_standard.cpp:1203:37: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_reverse.h:625:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 625 | return ModifiedString(host); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_fundamental.h:82, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>; TValue2 = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:254:13: required from 'void seqan::setHost(Pattern&, TNeedle2&&) [with TNeedle = Segment, Alloc<> >, InfixSegment>; TSpec = Myers; TNeedle2 = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:452:16: required from 'seqan::Pattern >::Pattern(TNeedle2&&, int) [with TNeedle2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/find_myers_ukkonen_reads.h:94:9: required from 'seqan::Pattern >::Pattern(TNeedle2&, int) [with TNeedle2 = seqan::String, seqan::Alloc<> >; TNeedle = seqan::String, seqan::Alloc<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/rabema_build_gold_standard.cpp:403:41: required from 'void buildErrorCurvePoints(seqan::String&, int&, TContigSeq&, size_t, bool, TReadSeq&, size_t, size_t, const TReadNames&, bool, const TPatternSpec&) [with TContigSeq = seqan::String, seqan::Alloc<> >; TReadSeq = seqan::String, seqan::Alloc<> >; TPatternSpec = seqan::Tag; TReadNames = seqan::StringSet > >; size_t = long unsigned int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/rabema_build_gold_standard.cpp:899:34: required from 'int matchesToErrorFunction(TErrorCurves&, seqan::String&, seqan::BamFileIn&, seqan::StringSet > >&, const seqan::StringSet > >&, const seqan::FaiIndex&, const BuildGoldStandardOptions&, const TPatternSpec&) [with TPatternSpec = seqan::Tag; TErrorCurves = std::map >; seqan::BamFileIn = seqan::FormattedFile, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/rabema_build_gold_standard.cpp:1203:37: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:118:25: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_reverse.h:625:12: required from 'seqan::ModifiedString > seqan::reverseString(THost&) [with THost = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_begin.h:212:61: required from 'static void seqan::FindBeginImpl_ >::_findBeginInit(TPattern&, TNeedle&) [with TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Myers >; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THasState = seqan::True]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_begin.h:330:65: required from 'void seqan::_findBeginInit(TPattern&, TNeedle&) [with TPattern = Pattern, Alloc<> >, InfixSegment>, Myers >; TNeedle = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:558:19: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:255:19: required from 'void seqan::setHost(Pattern&, TNeedle2&&) [with TNeedle = Segment, Alloc<> >, InfixSegment>; TSpec = Myers; TNeedle2 = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:452:16: required from 'seqan::Pattern >::Pattern(TNeedle2&&, int) [with TNeedle2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/find_myers_ukkonen_reads.h:94:9: required from 'seqan::Pattern >::Pattern(TNeedle2&, int) [with TNeedle2 = seqan::String, seqan::Alloc<> >; TNeedle = seqan::String, seqan::Alloc<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/rabema_build_gold_standard.cpp:403:41: required from 'void buildErrorCurvePoints(seqan::String&, int&, TContigSeq&, size_t, bool, TReadSeq&, size_t, size_t, const TReadNames&, bool, const TPatternSpec&) [with TContigSeq = seqan::String, seqan::Alloc<> >; TReadSeq = seqan::String, seqan::Alloc<> >; TPatternSpec = seqan::Tag; TReadNames = seqan::StringSet > >; size_t = long unsigned int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/rabema_build_gold_standard.cpp:899:34: required from 'int matchesToErrorFunction(TErrorCurves&, seqan::String&, seqan::BamFileIn&, seqan::StringSet > >&, const seqan::StringSet > >&, const seqan::FaiIndex&, const BuildGoldStandardOptions&, const TPatternSpec&) [with TPatternSpec = seqan::Tag; TErrorCurves = std::map >; seqan::BamFileIn = seqan::FormattedFile, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/rabema_build_gold_standard.cpp:1203:37: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned short': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned short const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned int': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)int', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int &' to 'seqan::BadLexicalCast::BadLexicalCast(int const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)unsigned int', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast(unsigned int const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)short', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, char*>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int &' to 'seqan::BadLexicalCast::BadLexicalCast(short const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)unsigned short', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, char*>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast(unsigned short const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, char*>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char &' to 'seqan::BadLexicalCast::BadLexicalCast(char const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)unsigned char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, unsigned char, seqan::TagList >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, char*>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char &' to 'seqan::BadLexicalCast::BadLexicalCast(unsigned char const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)signed char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(signed char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(signed char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, signed char>(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'seqan::tagApply >, char*>, unsigned char, seqan::TagList >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char &' to 'seqan::BadLexicalCast::BadLexicalCast(signed char const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)int', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, seqan::String >&>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)short', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, seqan::String >&>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, seqan::String >&>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(short const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, seqan::String >&>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char &' to 'seqan::BadLexicalCast::BadLexicalCast > >(char const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(unsigned char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(unsigned char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned char, seqan::TagList >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, seqan::String >&>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned char const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)signed char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(signed char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(signed char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, seqan::String >&>, signed char>(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned char, seqan::TagList >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char &' to 'seqan::BadLexicalCast::BadLexicalCast > >(signed char const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned short', inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void [clone .isra.0]' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:277:40: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void [clone .isra.0]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned short const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned short', inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void [clone .isra.0]' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:306:44: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void [clone .isra.0]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned short const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned int', inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void [clone .isra.0]' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:320:50: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void [clone .isra.0]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)int', inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void [clone .isra.0]' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:363:43: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void [clone .isra.0]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ [ 67%] Linking CXX executable ../../bin/rabema_build_gold_standard cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rabema && /usr/bin/cmake -E cmake_link_script CMakeFiles/rabema_build_gold_standard.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/rabema_build_gold_standard.dir/rabema_build_gold_standard.cpp.o -o ../../bin/rabema_build_gold_standard -lrt -lz In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from '_toText' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function '_toText': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 67%] Built target rabema_build_gold_standard make -f apps/rabema/CMakeFiles/rabema_evaluate.dir/build.make apps/rabema/CMakeFiles/rabema_evaluate.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rabema /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rabema/CMakeFiles/rabema_evaluate.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/rabema/CMakeFiles/rabema_evaluate.dir/build.make apps/rabema/CMakeFiles/rabema_evaluate.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 67%] Building CXX object apps/rabema/CMakeFiles/rabema_evaluate.dir/rabema_evaluate.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rabema && /usr/bin/g++ -DSEQAN_APP_VERSION=\"1.2.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/rabema/CMakeFiles/rabema_evaluate.dir/rabema_evaluate.cpp.o -MF CMakeFiles/rabema_evaluate.dir/rabema_evaluate.cpp.o.d -o CMakeFiles/rabema_evaluate.dir/rabema_evaluate.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/rabema_evaluate.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse.h:46, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/rabema_evaluate.cpp:28: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/debug_test_system.h:150, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse.h:44: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:50, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/rabema_evaluate.cpp:29: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/rabema_evaluate.cpp:33: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:58: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:56: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h: In instantiation of 'void seqan::findIntervals(String&, const Graph&, const TPropertyMap&, TValue) [with TSpec = Directed >; TPropertyMap = String, StorePointsOnly>, Alloc<> >; TValue = unsigned int; TCargo = unsigned int]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:1502:18: required from 'void seqan::findIntervals(String&, const IntervalTree&, TValue2) [with TValue = unsigned int; TCargo = unsigned int; TValue2 = unsigned int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/rabema_evaluate.cpp:644:22: required from 'int benchmarkReadResult(RabemaStats&, const seqan::String&, const seqan::BamFileIn&, const seqan::String&, const seqan::FaiIndex&, const seqan::StringSet, seqan::Alloc<> > >&, const RefIdMapping&, const RabemaEvaluationOptions&, const TPatternSpec&, bool, bool) [with TPatternSpec = seqan::Tag; seqan::BamFileIn = seqan::FormattedFile, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/rabema_evaluate.cpp:1003:42: required from 'int compareAlignedReadsToReference(RabemaStats&, seqan::BamFileIn&, const seqan::FaiIndex&, const seqan::StringSet, seqan::Alloc<> > >&, TForwardIter&, const RabemaEvaluationOptions&, const TPatternSpec&) [with TForwardIter = seqan::Iter >, seqan::StreamIterator > >; TPatternSpec = seqan::Tag; seqan::BamFileIn = seqan::FormattedFile, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/rabema_evaluate.cpp:1401:45: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:1441:18: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1441 | act_prop = property(pm, act_knot); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:1453:23: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1453 | next_prop = property(pm, targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:1475:27: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1475 | next_prop = property(pm, targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:76: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_reverse.h: In instantiation of 'seqan::ModifiedString > seqan::reverseString(THost&) [with THost = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_begin.h:212:61: required from 'static void seqan::FindBeginImpl_ >::_findBeginInit(TPattern&, TNeedle&) [with TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Myers >; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THasState = seqan::True]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_begin.h:330:65: required from 'void seqan::_findBeginInit(TPattern&, TNeedle&) [with TPattern = Pattern, Alloc<> >, InfixSegment>, Myers >; TNeedle = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:558:19: required from 'void seqan::_patternFirstInit(Pattern >&, TNeedle2&) [with TNeedle = Segment, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers; TNeedle2 = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:660:22: required from 'void seqan::_reinitPattern(Pattern >&) [with TNeedle = Segment, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:255:19: required from 'void seqan::setHost(Pattern&, TNeedle2&&) [with TNeedle = Segment, Alloc<> >, InfixSegment>; TSpec = Myers; TNeedle2 = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:452:16: required from 'seqan::Pattern >::Pattern(TNeedle2&&, int) [with TNeedle2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/find_myers_ukkonen_reads.h:94:9: required from 'seqan::Pattern >::Pattern(TNeedle2&, int) [with TNeedle2 = seqan::String, seqan::Alloc<> >; TNeedle = seqan::String, seqan::Alloc<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/rabema_evaluate.cpp:623:51: required from 'int benchmarkReadResult(RabemaStats&, const seqan::String&, const seqan::BamFileIn&, const seqan::String&, const seqan::FaiIndex&, const seqan::StringSet, seqan::Alloc<> > >&, const RefIdMapping&, const RabemaEvaluationOptions&, const TPatternSpec&, bool, bool) [with TPatternSpec = seqan::Tag; seqan::BamFileIn = seqan::FormattedFile, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/rabema_evaluate.cpp:1003:42: required from 'int compareAlignedReadsToReference(RabemaStats&, seqan::BamFileIn&, const seqan::FaiIndex&, const seqan::StringSet, seqan::Alloc<> > >&, TForwardIter&, const RabemaEvaluationOptions&, const TPatternSpec&) [with TForwardIter = seqan::Iter >, seqan::StreamIterator > >; TPatternSpec = seqan::Tag; seqan::BamFileIn = seqan::FormattedFile, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/rabema_evaluate.cpp:1401:45: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_reverse.h:625:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 625 | return ModifiedString(host); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:96: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_fundamental.h:82, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>; TValue2 = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:254:13: required from 'void seqan::setHost(Pattern&, TNeedle2&&) [with TNeedle = Segment, Alloc<> >, InfixSegment>; TSpec = Myers; TNeedle2 = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:452:16: required from 'seqan::Pattern >::Pattern(TNeedle2&&, int) [with TNeedle2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/find_myers_ukkonen_reads.h:94:9: required from 'seqan::Pattern >::Pattern(TNeedle2&, int) [with TNeedle2 = seqan::String, seqan::Alloc<> >; TNeedle = seqan::String, seqan::Alloc<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/rabema_evaluate.cpp:623:51: required from 'int benchmarkReadResult(RabemaStats&, const seqan::String&, const seqan::BamFileIn&, const seqan::String&, const seqan::FaiIndex&, const seqan::StringSet, seqan::Alloc<> > >&, const RefIdMapping&, const RabemaEvaluationOptions&, const TPatternSpec&, bool, bool) [with TPatternSpec = seqan::Tag; seqan::BamFileIn = seqan::FormattedFile, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/rabema_evaluate.cpp:1003:42: required from 'int compareAlignedReadsToReference(RabemaStats&, seqan::BamFileIn&, const seqan::FaiIndex&, const seqan::StringSet, seqan::Alloc<> > >&, TForwardIter&, const RabemaEvaluationOptions&, const TPatternSpec&) [with TForwardIter = seqan::Iter >, seqan::StreamIterator > >; TPatternSpec = seqan::Tag; seqan::BamFileIn = seqan::FormattedFile, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/rabema_evaluate.cpp:1401:45: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:118:25: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_reverse.h:625:12: required from 'seqan::ModifiedString > seqan::reverseString(THost&) [with THost = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_begin.h:212:61: required from 'static void seqan::FindBeginImpl_ >::_findBeginInit(TPattern&, TNeedle&) [with TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Myers >; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THasState = seqan::True]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_begin.h:330:65: required from 'void seqan::_findBeginInit(TPattern&, TNeedle&) [with TPattern = Pattern, Alloc<> >, InfixSegment>, Myers >; TNeedle = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:558:19: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:255:19: required from 'void seqan::setHost(Pattern&, TNeedle2&&) [with TNeedle = Segment, Alloc<> >, InfixSegment>; TSpec = Myers; TNeedle2 = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:452:16: required from 'seqan::Pattern >::Pattern(TNeedle2&&, int) [with TNeedle2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/find_myers_ukkonen_reads.h:94:9: required from 'seqan::Pattern >::Pattern(TNeedle2&, int) [with TNeedle2 = seqan::String, seqan::Alloc<> >; TNeedle = seqan::String, seqan::Alloc<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/rabema_evaluate.cpp:623:51: required from 'int benchmarkReadResult(RabemaStats&, const seqan::String&, const seqan::BamFileIn&, const seqan::String&, const seqan::FaiIndex&, const seqan::StringSet, seqan::Alloc<> > >&, const RefIdMapping&, const RabemaEvaluationOptions&, const TPatternSpec&, bool, bool) [with TPatternSpec = seqan::Tag; seqan::BamFileIn = seqan::FormattedFile, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/rabema_evaluate.cpp:1003:42: required from 'int compareAlignedReadsToReference(RabemaStats&, seqan::BamFileIn&, const seqan::FaiIndex&, const seqan::StringSet, seqan::Alloc<> > >&, TForwardIter&, const RabemaEvaluationOptions&, const TPatternSpec&) [with TForwardIter = seqan::Iter >, seqan::StreamIterator > >; TPatternSpec = seqan::Tag; seqan::BamFileIn = seqan::FormattedFile, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/rabema_evaluate.cpp:1401:45: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned short': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned short const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned int': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)int', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int &' to 'seqan::BadLexicalCast::BadLexicalCast(int const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)unsigned int', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast(unsigned int const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)short', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, char*>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int &' to 'seqan::BadLexicalCast::BadLexicalCast(short const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)unsigned short', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, char*>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast(unsigned short const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, char*>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char &' to 'seqan::BadLexicalCast::BadLexicalCast(char const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)unsigned char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, unsigned char, seqan::TagList >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, char*>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char &' to 'seqan::BadLexicalCast::BadLexicalCast(unsigned char const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)signed char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(signed char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(signed char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, signed char>(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'seqan::tagApply >, char*>, unsigned char, seqan::TagList >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char &' to 'seqan::BadLexicalCast::BadLexicalCast(signed char const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)int', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, seqan::String >&>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)short', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, seqan::String >&>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, seqan::String >&>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(short const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, seqan::String >&>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char &' to 'seqan::BadLexicalCast::BadLexicalCast > >(char const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(unsigned char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(unsigned char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned char, seqan::TagList >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, seqan::String >&>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned char const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)signed char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(signed char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(signed char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, seqan::String >&>, signed char>(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned char, seqan::TagList >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char &' to 'seqan::BadLexicalCast::BadLexicalCast > >(signed char const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned short', inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void [clone .isra.0]' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:277:40: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void [clone .isra.0]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned short const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned short', inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void [clone .isra.0]' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:306:44: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void [clone .isra.0]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned short const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned int', inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void [clone .isra.0]' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:320:50: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void [clone .isra.0]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)int', inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void [clone .isra.0]' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:363:43: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void [clone .isra.0]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ [ 68%] Linking CXX executable ../../bin/rabema_evaluate cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rabema && /usr/bin/cmake -E cmake_link_script CMakeFiles/rabema_evaluate.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/rabema_evaluate.dir/rabema_evaluate.cpp.o -o ../../bin/rabema_evaluate -lrt -lz In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from '_toText' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function '_toText': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'obtainId' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_idmanager.h:166:15, inlined from 'addVertex' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:525:36: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function 'addVertex': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 68%] Built target rabema_evaluate make -f apps/rabema/CMakeFiles/rabema_do_search.dir/build.make apps/rabema/CMakeFiles/rabema_do_search.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rabema /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rabema/CMakeFiles/rabema_do_search.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/rabema/CMakeFiles/rabema_do_search.dir/build.make apps/rabema/CMakeFiles/rabema_do_search.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 68%] Building CXX object apps/rabema/CMakeFiles/rabema_do_search.dir/do_search.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rabema && /usr/bin/g++ -DSEQAN_APP_VERSION=\"1.2.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/rabema/CMakeFiles/rabema_do_search.dir/do_search.cpp.o -MF CMakeFiles/rabema_do_search.dir/do_search.cpp.o.d -o CMakeFiles/rabema_do_search.dir/do_search.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/do_search.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find.h:44, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/do_search.cpp:8: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/fstream:40, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/do_search.cpp:3: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score.h:43, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find.h:45: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find.h:47: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/do_search.cpp:11: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:41: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/do_search.cpp:13: /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/curve_smoothing.h:105:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 105 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find.h:43: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:118:25: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/curve_smoothing.h:254:100: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:96: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_iterator.h:80, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:86, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/do_search.cpp:7: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::InfixSegment>; TIterator = WeightedMatch*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_iterator.h:72:7: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(ModifiedString >&, Tag) [with THost = Segment, InfixSegment>; TTagSpec = Standard_; typename Iterator >, const Tag >::Type = ModifiedIterator, InfixSegment>, AdaptorIterator > >, Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/curve_smoothing.h:257:52: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:94: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(T&, Rooted) [with T = Segment, InfixSegment>; typename Iterator >::Type = Iter, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:512:23: required from 'typename seqan::Iterator >::Type seqan::end(T&, Tag) [with T = Segment, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, InfixSegment>, AdaptorIterator > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_reverse.h:469:24: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(ModifiedString >&, Tag) [with THost = Segment, InfixSegment>; TTagSpec = Standard_; typename Iterator >, const Tag >::Type = ModifiedIterator, InfixSegment>, AdaptorIterator > >, Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/curve_smoothing.h:257:52: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:478:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 478 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::InfixSegment>; TIterator = WeightedMatch*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment, InfixSegment>; typename Iterator >::Type = Iter, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:385:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(T&, Tag) [with T = Segment, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment, InfixSegment>; typename Iterator >::Type = Iter, InfixSegment>, AdaptorIterator > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_reverse.h:513:97: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::end(ModifiedString >&, Tag) [with THost = Segment, InfixSegment>; TTagSpec = Standard_; typename Iterator >, const Tag >::Type = ModifiedIterator, InfixSegment>, AdaptorIterator > >, Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/curve_smoothing.h:257:91: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:343:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 343 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::InfixSegment>; TIterator = WeightedMatch*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:76: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_reverse.h: In instantiation of 'seqan::ModifiedString > seqan::reverseString(THost&) [with THost = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_begin.h:212:61: required from 'static void seqan::FindBeginImpl_ >::_findBeginInit(TPattern&, TNeedle&) [with TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Myers >; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THasState = seqan::True]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_begin.h:330:65: required from 'void seqan::_findBeginInit(TPattern&, TNeedle&) [with TPattern = Pattern, Alloc<> >, InfixSegment>, Myers >; TNeedle = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:558:19: required from 'void seqan::_patternFirstInit(Pattern >&, TNeedle2&) [with TNeedle = Segment, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers; TNeedle2 = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:660:22: required from 'void seqan::_reinitPattern(Pattern >&) [with TNeedle = Segment, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:255:19: required from 'void seqan::setHost(Pattern&, TNeedle2&&) [with TNeedle = Segment, Alloc<> >, InfixSegment>; TSpec = Myers; TNeedle2 = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:452:16: required from 'seqan::Pattern >::Pattern(TNeedle2&&, int) [with TNeedle2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/find_myers_ukkonen_reads.h:94:9: required from 'seqan::Pattern >::Pattern(TNeedle2&, int) [with TNeedle2 = seqan::String, seqan::Alloc<> >; TNeedle = seqan::String, seqan::Alloc<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/do_search.cpp:27:89: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_reverse.h:625:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 625 | return ModifiedString(host); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_fundamental.h:82, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>; TValue2 = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Segment, Alloc<> >, InfixSegment>; typename Reference > >::Type = Segment, Alloc<> >, InfixSegment>&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:840:14: required from 'void seqan::setValue(Holder >&, const TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>; TValue2 = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:254:13: required from 'void seqan::setHost(Pattern&, TNeedle2&&) [with TNeedle = Segment, Alloc<> >, InfixSegment>; TSpec = Myers; TNeedle2 = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:452:16: required from 'seqan::Pattern >::Pattern(TNeedle2&&, int) [with TNeedle2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/find_myers_ukkonen_reads.h:94:9: required from 'seqan::Pattern >::Pattern(TNeedle2&, int) [with TNeedle2 = seqan::String, seqan::Alloc<> >; TNeedle = seqan::String, seqan::Alloc<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/do_search.cpp:27:89: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:118:25: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_reverse.h:625:12: required from 'seqan::ModifiedString > seqan::reverseString(THost&) [with THost = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_begin.h:212:61: required from 'static void seqan::FindBeginImpl_ >::_findBeginInit(TPattern&, TNeedle&) [with TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Myers >; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THasState = seqan::True]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_begin.h:330:65: required from 'void seqan::_findBeginInit(TPattern&, TNeedle&) [with TPattern = Pattern, Alloc<> >, InfixSegment>, Myers >; TNeedle = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:558:19: required from 'void seqan::_patternFirstInit(Pattern >&, TNeedle2&) [with TNeedle = Segment, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers; TNeedle2 = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:660:22: required from 'void seqan::_reinitPattern(Pattern >&) [with TNeedle = Segment, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:255:19: required from 'void seqan::setHost(Pattern&, TNeedle2&&) [with TNeedle = Segment, Alloc<> >, InfixSegment>; TSpec = Myers; TNeedle2 = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:452:16: required from 'seqan::Pattern >::Pattern(TNeedle2&&, int) [with TNeedle2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/find_myers_ukkonen_reads.h:94:9: required from 'seqan::Pattern >::Pattern(TNeedle2&, int) [with TNeedle2 = seqan::String, seqan::Alloc<> >; TNeedle = seqan::String, seqan::Alloc<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema/do_search.cpp:27:89: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ [ 70%] Linking CXX executable ../../bin/rabema_do_search cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rabema && /usr/bin/cmake -E cmake_link_script CMakeFiles/rabema_do_search.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/rabema_do_search.dir/do_search.cpp.o -o ../../bin/rabema_do_search -lrt -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 70%] Built target rabema_do_search make -f apps/razers/CMakeFiles/razers.dir/build.make apps/razers/CMakeFiles/razers.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/razers /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/razers/CMakeFiles/razers.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/razers/CMakeFiles/razers.dir/build.make apps/razers/CMakeFiles/razers.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 70%] Building CXX object apps/razers/CMakeFiles/razers.dir/razers.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/razers && /usr/bin/g++ -DSEQAN_APP_VERSION=\"1.5.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/razers/CMakeFiles/razers.dir/razers.cpp.o -MF CMakeFiles/razers.dir/razers.cpp.o.d -o CMakeFiles/razers.dir/razers.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse.h:46, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:49: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/debug_test_system.h:150, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse.h:44: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find.h:47, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:28, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:50: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:29: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:50, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/bam_sam.h:39, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:55: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:42, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:47: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:76: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:91: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:102: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:107: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:110: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:111: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:114: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:121: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:125: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:131: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:188: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:696:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 696 | struct LessRNoGPos : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:728:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 728 | struct LessRNoGEndPos : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:760:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 760 | struct LessErrors : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:51: /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/outputFormat.h:126:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 126 | struct LessGPosRNo : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:55: /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:221:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 221 | struct LessPairErrors : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:622:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:58: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:622:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:622:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:622:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h: In instantiation of 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet, Alloc<> >, Owner > >; TMyersPatterns = String, Alloc<> >, Myers > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:492:40: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:777:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2203:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2276:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:209:25: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:697:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:1471:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1471 | TGenomeInfixRev infRev(inf); | ^~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:96: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h: In instantiation of 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet, Alloc<> >, Owner > >; TMyersPatterns = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:1717:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2043:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2206:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2276:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:209:25: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:697:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:1471:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1471 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:622:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:94: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment, Alloc<> >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter >, StreamIterator > >; TContainer = Segment, Alloc<> >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = VirtualStream >; THost = const String, Alloc<> >; TSpec = InfixSegment]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/outputFormat.h:722:12: required from 'void seqan::dumpMatches(TMatches&, const TGenomeNames&, StringSet > >&, std::map, unsigned int> >&, const TReads&, TCounts&, const TReadNames&, CharString, CharString, RazerSOptions&) [with TMatches = String >; TGenomeNames = StringSet > >; TReads = StringSet, Alloc<> >, Owner > >; TReadNames = StringSet > >; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:232:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:697:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_iterator.h:80, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:86: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:622:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:385:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:395:32: required from 'seqan::Finder >::Finder(THaystack&, TRepeatSize, TPeriodSize) [with TRepeatSize = int; TPeriodSize = int; THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:394:16: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:777:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2203:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2265:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:209:25: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:697:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:343:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 343 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find.h:55: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = Swift > >; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1928:77: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:428:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:777:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2203:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2265:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:209:25: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:697:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:599:38: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 599 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:222: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1929:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:428:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:777:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2203:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2268:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:209:25: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:697:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 752 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:87: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1929:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = String, Alloc<> >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:1699:13: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2043:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2206:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2268:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:209:25: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:697:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 752 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1929:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:428:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:777:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2203:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2271:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:209:25: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:697:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 752 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/cyclic_shape.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:68: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1929:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = String, Alloc<> >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:1699:13: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2043:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2206:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2271:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:209:25: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:697:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 752 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = Swift > >; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1928:77: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:428:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:777:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2203:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2276:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:209:25: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:697:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:599:38: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 599 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:118:25: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:1471:19: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet, Alloc<> >, Owner > >; TMyersPatterns = String, Alloc<> >, Myers > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:492:40: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:777:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2203:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2276:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:209:25: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:697:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:118:25: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:1472:13: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet, Alloc<> >, Owner > >; TMyersPatterns = String, Alloc<> >, Myers > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:492:40: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:777:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2203:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2276:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:209:25: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:697:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1929:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:428:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:777:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2203:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2279:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:209:25: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:697:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 752 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1929:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = String, Alloc<> >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:1699:13: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2043:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2206:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2279:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:209:25: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:697:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 752 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1929:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:428:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:777:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2203:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2282:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:209:25: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:697:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 752 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1929:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = String, Alloc<> >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:1699:13: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2043:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2206:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2282:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:209:25: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:697:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 752 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:622:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::host(Finder&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = Swift > >; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1866:36: required from 'bool seqan::_firstNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1934:34: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:428:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:777:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2203:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2265:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:209:25: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:697:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:585:38: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 585 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, TIntegral) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag; TIntegral = long unsigned int]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1876:41: required from 'bool seqan::_firstNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1934:34: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:428:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:777:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2203:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2265:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:209:25: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:697:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:577:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 577 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, TIntegral) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag; TIntegral = unsigned int]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1845:48: required from 'bool seqan::_nextNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1965:37: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:428:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:777:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2203:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2265:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:209:25: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:697:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:577:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 577 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::host(Finder&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = Swift > >; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1866:36: required from 'bool seqan::_firstNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1934:34: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:428:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:777:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2203:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2276:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:209:25: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:697:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:585:38: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 585 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_iterator.h:72:7: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(ModifiedString >&, Tag) [with THost = Segment, Alloc<> >, InfixSegment>; TTagSpec = Rooted_; typename Iterator >, const Tag >::Type = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:301:30: required from 'seqan::Finder::Finder(THaystack&) [with THaystack = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:1473:19: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet, Alloc<> >, Owner > >; TMyersPatterns = String, Alloc<> >, Myers > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:492:40: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:777:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2203:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2276:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:209:25: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:697:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment, Alloc<> >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter >, StreamIterator > >; TContainer = Segment, Alloc<> >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = VirtualStream >; THost = const String, Alloc<> >; TSpec = InfixSegment]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/outputFormat.h:722:12: required from 'void seqan::dumpMatches(TMatches&, const TGenomeNames&, StringSet > >&, std::map, unsigned int> >&, const TReads&, TCounts&, const TReadNames&, CharString, CharString, RazerSOptions&) [with TMatches = String >; TGenomeNames = StringSet > >; TReads = StringSet, Alloc<> >, Owner > >; TReadNames = StringSet > >; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:232:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:697:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_fundamental.h:72, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSource = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; typename DisableIf > >::Type = void]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TValue2 = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; typename Reference > >::Type = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:339:17: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Swift > >; typename Host >::Type = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:375:32: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:777:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2203:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2265:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:209:25: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:697:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 110 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note: because 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::UngappedShape<0> >; TSpec = seqan::Tag]' 278 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSource = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; typename DisableIf > >::Type = void]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TValue2 = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; typename Reference > >::Type = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:339:17: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Swift > >; typename Host >::Type = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:1666:31: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2043:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2206:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2265:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:209:25: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:697:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 110 | target = source; | ~~~~~~~^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:92: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::UngappedShape<0> >]' 143 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSource = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; typename DisableIf > >::Type = void]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TValue2 = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; typename Reference > >::Type = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:339:17: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Swift > >; typename Host >::Type = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:375:32: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:777:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2203:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2268:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:209:25: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:697:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 110 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note: because 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>; TSpec = seqan::Tag]' 278 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:229:7: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 229 | class Index > { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' first required here 110 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSource = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; typename DisableIf > >::Type = void]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TValue2 = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; typename Reference > >::Type = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:339:17: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Swift > >; typename Host >::Type = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:1666:31: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2043:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2206:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2268:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:209:25: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:697:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>]' 143 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:86:11: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 86 | class Index > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' first required here 110 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSource = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; typename DisableIf > >::Type = void]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TValue2 = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; typename Reference > >::Type = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:339:17: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Swift > >; typename Host >::Type = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:375:32: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:777:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2203:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2271:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:209:25: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:697:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note: because 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::GappedShape > >; TSpec = seqan::Tag]' 278 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:229:7: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 229 | class Index > { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' first required here 110 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSource = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; typename DisableIf > >::Type = void]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TValue2 = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; typename Reference > >::Type = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:339:17: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Swift > >; typename Host >::Type = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:1666:31: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2043:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2206:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2271:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:209:25: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:697:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::GappedShape > >]' 143 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:86:11: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 86 | class Index > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' first required here 110 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = void; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1603:45: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, void>; TNeedle = String, Alloc<> >; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1636:16: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&, int) [with TFinder = Finder, Alloc<> >, InfixSegment>, void>; TNeedle = String, Alloc<> >; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1654:16: required from 'bool seqan::find(TFinder&, Pattern >&, int) [with TFinder = Finder, Alloc<> >, InfixSegment>, void>; TNeedle = String, Alloc<> >; TSpec = FindInfix; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:1455:13: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet, Alloc<> >, Owner > >; TMyersPatterns = String, Alloc<> >, Myers > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:492:40: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:777:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2203:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2276:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:209:25: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:697:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:599:38: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 599 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:512:23: required from 'typename seqan::Iterator >::Type seqan::end(T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_reverse.h:469:24: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(ModifiedString >&, Tag) [with THost = Segment, Alloc<> >, InfixSegment>; TTagSpec = Rooted_; typename Iterator >, const Tag >::Type = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:301:30: required from 'seqan::Finder::Finder(THaystack&) [with THaystack = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:1473:19: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet, Alloc<> >, Owner > >; TMyersPatterns = String, Alloc<> >, Myers > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:492:40: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:777:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2203:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2276:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:209:25: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:697:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:478:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 478 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:369:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1845:33: required from 'bool seqan::_nextNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1965:37: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:428:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:777:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2203:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2265:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:209:25: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:697:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:61: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_iterator.h: In instantiation of 'typename seqan::Container >::Type seqan::container(ModifiedIterator&) [with THost = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; TSpec = Tag; typename Container >::Type = ModifiedString, Alloc<> >, InfixSegment>, Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:599:21: required from 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = ModifiedString, Alloc<> >, InfixSegment>, Tag >; TSpec = void; typename Parameter_::Type = ModifiedString, Alloc<> >, InfixSegment>, Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1603:45: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Tag >, void>; TNeedle = ModifiedString, Alloc<> >, InfixSegment>, Tag >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1636:16: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&, int) [with TFinder = Finder, Alloc<> >, InfixSegment>, Tag >, void>; TNeedle = ModifiedString, Alloc<> >, InfixSegment>, Tag >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1654:16: required from 'bool seqan::find(TFinder&, Pattern >&, int) [with TFinder = Finder, Alloc<> >, InfixSegment>, Tag >, void>; TNeedle = ModifiedString, Alloc<> >, InfixSegment>, Tag >; TSpec = FindPrefix; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:1478:13: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet, Alloc<> >, Owner > >; TMyersPatterns = String, Alloc<> >, Myers > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:492:40: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:777:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2203:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2276:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:209:25: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:697:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_iterator.h:278:16: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 278 | TContainer cont(container(host(me))); | ^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_fundamental.h:82: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>; TValue2 = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:254:13: required from 'void seqan::setHost(Pattern&, TNeedle2&&) [with TNeedle = Segment, Alloc<> >, InfixSegment>; TSpec = Myers; TNeedle2 = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:1971:11: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2206:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2265:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:209:25: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:697:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>; TValue2 = const Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:887:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Segment, Alloc<> >, InfixSegment>; TSource = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:135:20: required from 'seqan::Holder >::Holder(const THostValue&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THostValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_wotd.h:259:13: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:394:16: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers_matepairs.h:777:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2203:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.h:2265:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:209:25: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/razers.cpp:697:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119: In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned int', inlined from 'seqan::parseGappedParams >, seqan::RazerSSpec >(seqan::RazerSOptions >&, std::basic_fstream >&, seqan::ParamChooserOptions&)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/paramChooser.h:992:51, inlined from 'seqan::chooseParams >(seqan::RazerSOptions >&, seqan::ParamChooserOptions&)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/paramChooser.h:1285:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::chooseParams >(seqan::RazerSOptions >&, seqan::ParamChooserOptions&)bool': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned int', inlined from 'seqan::parseGappedParams >, seqan::RazerSSpec >(seqan::RazerSOptions >&, std::basic_fstream >&, seqan::ParamChooserOptions&)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/paramChooser.h:1010:66, inlined from 'seqan::chooseParams >(seqan::RazerSOptions >&, seqan::ParamChooserOptions&)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/paramChooser.h:1285:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::chooseParams >(seqan::RazerSOptions >&, seqan::ParamChooserOptions&)bool': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned int', inlined from 'seqan::parseGappedParams >, seqan::RazerSSpec >(seqan::RazerSOptions >&, std::basic_fstream >&, seqan::ParamChooserOptions&)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/paramChooser.h:1020:53, inlined from 'seqan::chooseParams >(seqan::RazerSOptions >&, seqan::ParamChooserOptions&)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/paramChooser.h:1285:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::chooseParams >(seqan::RazerSOptions >&, seqan::ParamChooserOptions&)bool': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ [ 71%] Building CXX object apps/razers/CMakeFiles/razers.dir/param_tabs.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/razers && /usr/bin/g++ -DSEQAN_APP_VERSION=\"1.5.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/razers/CMakeFiles/razers.dir/param_tabs.cpp.o -MF CMakeFiles/razers.dir/param_tabs.cpp.o.d -o CMakeFiles/razers.dir/param_tabs.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers/param_tabs.cpp [ 71%] Linking CXX executable ../../bin/razers cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/razers && /usr/bin/cmake -E cmake_link_script CMakeFiles/razers.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/razers.dir/razers.cpp.o CMakeFiles/razers.dir/param_tabs.cpp.o -o ../../bin/razers -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 71%] Built target razers make -f apps/razers3/CMakeFiles/razers3.dir/build.make apps/razers3/CMakeFiles/razers3.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/razers3 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/razers3/CMakeFiles/razers3.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/razers3/CMakeFiles/razers3.dir/build.make apps/razers3/CMakeFiles/razers3.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 73%] Building CXX object apps/razers3/CMakeFiles/razers3.dir/razers.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/razers3 && /usr/bin/g++ -DSEQAN_APP_VERSION=\"3.5.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/razers3/CMakeFiles/razers3.dir/razers.cpp.o -MF CMakeFiles/razers3.dir/razers.cpp.o.d -o CMakeFiles/razers3.dir/razers.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:57: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:63: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:41: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:42, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:34, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:74: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:47: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:76: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:91: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:102: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:107: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:110: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:111: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:114: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:121: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:125: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:131: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:188: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:845:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 845 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:862:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 862 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:896:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 896 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:934:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 934 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:968:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 968 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:1009:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1009 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:1046:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1046 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:1087:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1087 | public std::binary_function::Type, typename Value::Type, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:1130:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1130 | public std::binary_function::Type, typename Value::Type, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:1174:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1174 | public std::binary_function::Type, typename Value::Type, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:1218:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1218 | public std::binary_function::Type, typename Value::Type, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:127:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::binary_function::Type, typename Value::Type, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:83: /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs.h:265:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 265 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs.h:321:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 321 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs.h:366:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 366 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score.h:43, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:45: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:61: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:785:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel.h:75, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:48: /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1301:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1345:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_macros.h:87:30: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 87 | #define SEQAN_DO_PRAGMA(x) _Pragma(# x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_macros.h:88:31: note: in expansion of macro 'SEQAN_DO_PRAGMA' 88 | #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:672:13: note: in expansion of macro 'SEQAN_OMP_PRAGMA' 672 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:97: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1304:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1345:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_macros.h:87:30: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 87 | #define SEQAN_DO_PRAGMA(x) _Pragma(# x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_macros.h:88:31: note: in expansion of macro 'SEQAN_DO_PRAGMA' 88 | #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:672:13: note: in expansion of macro 'SEQAN_OMP_PRAGMA' 672 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode, NMatchesNone_>; CharString = String >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1307:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1345:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_macros.h:87:30: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 87 | #define SEQAN_DO_PRAGMA(x) _Pragma(# x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_macros.h:88:31: note: in expansion of macro 'SEQAN_DO_PRAGMA' 88 | #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:672:13: note: in expansion of macro 'SEQAN_OMP_PRAGMA' 672 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1301:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSPrefix; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1348:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_macros.h:87:30: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 87 | #define SEQAN_DO_PRAGMA(x) _Pragma(# x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_macros.h:88:31: note: in expansion of macro 'SEQAN_DO_PRAGMA' 88 | #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:672:13: note: in expansion of macro 'SEQAN_OMP_PRAGMA' 672 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1304:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSPrefix; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1348:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_macros.h:87:30: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 87 | #define SEQAN_DO_PRAGMA(x) _Pragma(# x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_macros.h:88:31: note: in expansion of macro 'SEQAN_DO_PRAGMA' 88 | #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:672:13: note: in expansion of macro 'SEQAN_OMP_PRAGMA' 672 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode, NMatchesNone_>; CharString = String >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1307:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSPrefix; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1348:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_macros.h:87:30: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 87 | #define SEQAN_DO_PRAGMA(x) _Pragma(# x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_macros.h:88:31: note: in expansion of macro 'SEQAN_DO_PRAGMA' 88 | #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:672:13: note: in expansion of macro 'SEQAN_OMP_PRAGMA' 672 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1301:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1351:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_macros.h:87:30: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 87 | #define SEQAN_DO_PRAGMA(x) _Pragma(# x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_macros.h:88:31: note: in expansion of macro 'SEQAN_DO_PRAGMA' 88 | #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:672:13: note: in expansion of macro 'SEQAN_OMP_PRAGMA' 672 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1304:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1351:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_macros.h:87:30: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 87 | #define SEQAN_DO_PRAGMA(x) _Pragma(# x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_macros.h:88:31: note: in expansion of macro 'SEQAN_DO_PRAGMA' 88 | #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:672:13: note: in expansion of macro 'SEQAN_OMP_PRAGMA' 672 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode, NMatchesNone_>; CharString = String >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1307:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1351:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_macros.h:87:30: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 87 | #define SEQAN_DO_PRAGMA(x) _Pragma(# x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_macros.h:88:31: note: in expansion of macro 'SEQAN_DO_PRAGMA' 88 | #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:672:13: note: in expansion of macro 'SEQAN_OMP_PRAGMA' 672 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1301:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1356:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_macros.h:87:30: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 87 | #define SEQAN_DO_PRAGMA(x) _Pragma(# x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_macros.h:88:31: note: in expansion of macro 'SEQAN_DO_PRAGMA' 88 | #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:672:13: note: in expansion of macro 'SEQAN_OMP_PRAGMA' 672 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1304:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1356:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_macros.h:87:30: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 87 | #define SEQAN_DO_PRAGMA(x) _Pragma(# x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_macros.h:88:31: note: in expansion of macro 'SEQAN_DO_PRAGMA' 88 | #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:672:13: note: in expansion of macro 'SEQAN_OMP_PRAGMA' 672 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode, NMatchesNone_>; CharString = String >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1307:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1356:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_macros.h:87:30: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 87 | #define SEQAN_DO_PRAGMA(x) _Pragma(# x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_macros.h:88:31: note: in expansion of macro 'SEQAN_DO_PRAGMA' 88 | #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:672:13: note: in expansion of macro 'SEQAN_OMP_PRAGMA' 672 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1301:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSPrefix; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1359:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_macros.h:87:30: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 87 | #define SEQAN_DO_PRAGMA(x) _Pragma(# x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_macros.h:88:31: note: in expansion of macro 'SEQAN_DO_PRAGMA' 88 | #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:672:13: note: in expansion of macro 'SEQAN_OMP_PRAGMA' 672 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1304:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSPrefix; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1359:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_macros.h:87:30: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 87 | #define SEQAN_DO_PRAGMA(x) _Pragma(# x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_macros.h:88:31: note: in expansion of macro 'SEQAN_DO_PRAGMA' 88 | #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:672:13: note: in expansion of macro 'SEQAN_OMP_PRAGMA' 672 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode, NMatchesNone_>; CharString = String >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1307:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSPrefix; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1359:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_macros.h:87:30: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 87 | #define SEQAN_DO_PRAGMA(x) _Pragma(# x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_macros.h:88:31: note: in expansion of macro 'SEQAN_DO_PRAGMA' 88 | #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:672:13: note: in expansion of macro 'SEQAN_OMP_PRAGMA' 672 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1301:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1362:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_macros.h:87:30: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 87 | #define SEQAN_DO_PRAGMA(x) _Pragma(# x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_macros.h:88:31: note: in expansion of macro 'SEQAN_DO_PRAGMA' 88 | #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:672:13: note: in expansion of macro 'SEQAN_OMP_PRAGMA' 672 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1304:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1362:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_macros.h:87:30: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 87 | #define SEQAN_DO_PRAGMA(x) _Pragma(# x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_macros.h:88:31: note: in expansion of macro 'SEQAN_DO_PRAGMA' 88 | #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:672:13: note: in expansion of macro 'SEQAN_OMP_PRAGMA' 672 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode, NMatchesNone_>; CharString = String >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1307:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1362:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_macros.h:87:30: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 87 | #define SEQAN_DO_PRAGMA(x) _Pragma(# x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_macros.h:88:31: note: in expansion of macro 'SEQAN_DO_PRAGMA' 88 | #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:672:13: note: in expansion of macro 'SEQAN_OMP_PRAGMA' 672 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:785:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:785:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:785:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::QualityExtractor >; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io.h:745:69: required from 'void seqan::write(TTarget&, FragmentStore&, Amos) [with TTarget = VirtualStream >; TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig; Amos = const Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1222:14: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1301:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1345:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:96: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:785:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:85: /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, OneGappedShape>; TOptions = RazerSCoreOptions >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:1463:40: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:1662:41: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:358:19: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 358 | tls.shape = shape; | ~~~~~~~~~~^~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:87: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:399:22: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 399 | indexL.shape = shape; | ~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:413:22: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 413 | indexR.shape = shape; | ~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:33: /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, OneGappedShape>; TOptions = RazerSCoreOptions >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:1008:40: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:1202:39: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:835:19: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 835 | tls.shape = shape; | ~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:862:21: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 862 | index.shape = shape; | ~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, GappedShape > >; TOptions = RazerSCoreOptions >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:1463:40: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:1657:41: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:358:19: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 358 | tls.shape = shape; | ~~~~~~~~~~^~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/cyclic_shape.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:68: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:399:22: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 399 | indexL.shape = shape; | ~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:413:22: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 413 | indexR.shape = shape; | ~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, GappedShape > >; TOptions = RazerSCoreOptions >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:1008:40: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:1197:39: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:835:19: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 835 | tls.shape = shape; | ~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:862:21: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 862 | index.shape = shape; | ~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, OneGappedShape>; TOptions = RazerSCoreOptions >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:1463:40: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:1662:41: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:358:19: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 358 | tls.shape = shape; | ~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:399:22: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 399 | indexL.shape = shape; | ~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:413:22: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 413 | indexR.shape = shape; | ~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, OneGappedShape>; TOptions = RazerSCoreOptions >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:1008:40: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:1202:39: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:835:19: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 835 | tls.shape = shape; | ~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:862:21: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 862 | index.shape = shape; | ~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, GappedShape > >; TOptions = RazerSCoreOptions >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:1463:40: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:1657:41: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:358:19: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 358 | tls.shape = shape; | ~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:399:22: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 399 | indexL.shape = shape; | ~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:413:22: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 413 | indexR.shape = shape; | ~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, GappedShape > >; TOptions = RazerSCoreOptions >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:1008:40: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:1197:39: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:835:19: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 835 | tls.shape = shape; | ~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:862:21: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 862 | index.shape = shape; | ~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, OneGappedShape>; TOptions = RazerSCoreOptions >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:1463:40: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:1662:41: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:358:19: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 358 | tls.shape = shape; | ~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:399:22: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 399 | indexL.shape = shape; | ~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:413:22: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 413 | indexR.shape = shape; | ~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, OneGappedShape>; TOptions = RazerSCoreOptions >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:1008:40: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:1202:39: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:835:19: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 835 | tls.shape = shape; | ~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:862:21: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 862 | index.shape = shape; | ~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, GappedShape > >; TOptions = RazerSCoreOptions >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:1463:40: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:1657:41: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:358:19: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 358 | tls.shape = shape; | ~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:399:22: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 399 | indexL.shape = shape; | ~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:413:22: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 413 | indexR.shape = shape; | ~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, GappedShape > >; TOptions = RazerSCoreOptions >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:1008:40: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:1197:39: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:835:19: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 835 | tls.shape = shape; | ~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:862:21: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 862 | index.shape = shape; | ~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, OneGappedShape>; TOptions = RazerSCoreOptions >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:1463:40: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:1662:41: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3452:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:358:19: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 358 | tls.shape = shape; | ~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:399:22: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 399 | indexL.shape = shape; | ~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:413:22: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 413 | indexR.shape = shape; | ~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, OneGappedShape>; TOptions = RazerSCoreOptions >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:1008:40: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:1202:39: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3452:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:835:19: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 835 | tls.shape = shape; | ~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:862:21: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 862 | index.shape = shape; | ~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, GappedShape > >; TOptions = RazerSCoreOptions >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:1463:40: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:1657:41: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3452:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:358:19: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 358 | tls.shape = shape; | ~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:399:22: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 399 | indexL.shape = shape; | ~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:413:22: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 413 | indexR.shape = shape; | ~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, GappedShape > >; TOptions = RazerSCoreOptions >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:1008:40: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:1197:39: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3452:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:835:19: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 835 | tls.shape = shape; | ~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:862:21: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 862 | index.shape = shape; | ~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h: In instantiation of 'seqan::ModifiedString::ModifiedString(THost_&&, typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type*) [with THost_ = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; THost = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >; TSpec = seqan::Tag; typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type = void; typename seqan::RemoveReference::Type = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >; typename seqan::RemoveReference::Type = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_shortcuts.h:340:12: required from 'typename seqan::ReverseComplementString::Type seqan::reverseComplementString(const THost&) [with THost = Segment, Alloc<> >, InfixSegment>; typename ReverseComplementString::Type = ModifiedString, Alloc<> >, InfixSegment>, ModView > > >, Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:936:80: required from 'void seqan::setPrimaryMatch(BamAlignmentRecord&, FragmentStore&, const TAlignedRead&, const TAlignQuality&, TBamIOFunctor&, bool) [with TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig; TAlignedRead = AlignedReadStoreElement, void>; TAlignQuality = AlignQualityStoreElement; TBamIOFunctor = BamAlignFunctorEditDistance]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorEditDistance]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1210:32: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1301:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1345:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:140:13: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 140 | _host(std::forward(host)), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement >; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:94: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/tokenization.h:489:23: required from 'void seqan::writeWrappedString(TTarget&, const TSequence&, TSize) [with TTarget = Iter >, StreamIterator > >; TSequence = Segment, Alloc<> >, InfixSegment>; TSize = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io.h:740:27: required from 'void seqan::write(TTarget&, FragmentStore&, Amos) [with TTarget = VirtualStream >; TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig; Amos = const Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1222:14: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1301:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1345:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_iterator.h:80, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:86, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:60: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:98:7: required from 'typename seqan::Iterator, const seqan::Tag >::Type seqan::begin(const ModifiedString&, Tag) [with THost = const Segment, Alloc<> >, InfixSegment>; TSpec = ModView > >; TTagSpec = Rooted_; typename Iterator, const Tag >::Type = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, ModView > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/tokenization.h:489:23: required from 'void seqan::writeWrappedString(TTarget&, const TSequence&, TSize) [with TTarget = Iter >, StreamIterator > >; TSequence = ModifiedString, Alloc<> >, InfixSegment>, ModView > > >; TSize = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io.h:746:27: required from 'void seqan::write(TTarget&, FragmentStore&, Amos) [with TTarget = VirtualStream >; TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig; Amos = const Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1222:14: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1301:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1345:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSCoreOptions >, RazerSMode, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, String > >; TGenome = String, Alloc<> >; TRead = Segment, Alloc<> >, InfixSegment>; TMatchNPolicy = NMatchesAll_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs.h:793:40: required from 'void seqan::_mapMatePairReads(TMatches&, FragmentStore&, unsigned int, Pattern&, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TReadIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TFilterSpec = Swift > >; TCounts = String >; TRazerSOptions = RazerSCoreOptions >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs.h:1115:30: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3247:33: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2155 | TGenomeInfix origInf(inf); | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2238 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2239 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2341 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2342 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:223: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat) [with TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSpec = void]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2785:21: required from 'void seqan::_applyFilterOptions(Pattern >&, const TOptions&) [with TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TPigeonholeSpec = void; TOptions = RazerSCoreOptions >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs.h:1088:24: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3252:33: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h:518:35: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 518 | indexShape(host(pattern)) = pattern.shape; | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSCoreOptions >, RazerSMode, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, String > >; TGenome = String, Alloc<> >; TRead = Segment, Alloc<> >, InfixSegment>; TMatchNPolicy = NMatchesAll_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs.h:793:40: required from 'void seqan::_mapMatePairReads(TMatches&, FragmentStore&, unsigned int, Pattern&, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TReadIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TFilterSpec = Pigeonhole; TCounts = String >; TRazerSOptions = RazerSCoreOptions >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs.h:1115:30: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3252:33: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2155 | TGenomeInfix origInf(inf); | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2238 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2239 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2341 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2342 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:222: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2896:17: required from 'void seqan::_applyFilterOptions(Pattern >&, const TOptions&) [with TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TOptions = RazerSCoreOptions >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs.h:1088:24: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3247:33: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 752 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSCoreOptions >, RazerSMode, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, String > >; TGenome = String, Alloc<> >; TRead = Segment, Alloc<> >, InfixSegment>; TMatchNPolicy = NMatchesAll_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs.h:793:40: required from 'void seqan::_mapMatePairReads(TMatches&, FragmentStore&, unsigned int, Pattern&, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TReadIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TFilterSpec = Swift > >; TCounts = String >; TRazerSOptions = RazerSCoreOptions >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs.h:1115:30: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3247:33: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2155 | TGenomeInfix origInf(inf); | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2238 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2239 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2341 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2342 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat) [with TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSpec = Hamming_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2785:21: required from 'void seqan::_applyFilterOptions(Pattern >&, const TOptions&) [with TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TPigeonholeSpec = Hamming_; TOptions = RazerSCoreOptions >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs.h:1088:24: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3252:33: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h:518:35: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 518 | indexShape(host(pattern)) = pattern.shape; | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2896:17: required from 'void seqan::_applyFilterOptions(Pattern >&, const TOptions&) [with TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TOptions = RazerSCoreOptions >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs.h:1088:24: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3247:33: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 752 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSCoreOptions >, RazerSMode, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, String > >; TGenome = String, Alloc<> >; TRead = Segment, Alloc<> >, InfixSegment>; TMatchNPolicy = NMatchesNone_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs.h:793:40: required from 'void seqan::_mapMatePairReads(TMatches&, FragmentStore&, unsigned int, Pattern&, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TReadIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TFilterSpec = Swift > >; TCounts = String >; TRazerSOptions = RazerSCoreOptions >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs.h:1115:30: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3247:33: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2155 | TGenomeInfix origInf(inf); | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2238 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2239 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2341 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2342 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSCoreOptions >, RazerSMode, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, String > >; TGenome = String, Alloc<> >; TRead = Segment, Alloc<> >, InfixSegment>; TMatchNPolicy = NMatchesNone_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs.h:793:40: required from 'void seqan::_mapMatePairReads(TMatches&, FragmentStore&, unsigned int, Pattern&, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TReadIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TFilterSpec = Pigeonhole; TCounts = String >; TRazerSOptions = RazerSCoreOptions >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs.h:1115:30: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3252:33: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2155 | TGenomeInfix origInf(inf); | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2238 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2239 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2341 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2342 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSCoreOptions >, RazerSMode, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, String > >; TGenome = String, Alloc<> >; TRead = Segment, Alloc<> >, InfixSegment>; TMatchNPolicy = NMatchesNone_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs.h:793:40: required from 'void seqan::_mapMatePairReads(TMatches&, FragmentStore&, unsigned int, Pattern&, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TReadIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TFilterSpec = Swift > >; TCounts = String >; TRazerSOptions = RazerSCoreOptions >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs.h:1115:30: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3247:33: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2155 | TGenomeInfix origInf(inf); | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2238 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2239 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2341 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2342 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find.h:55, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:32: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = Pigeonhole; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h:969:48: required from 'bool seqan::find(Finder >&, Pattern >&, double) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs.h:696:16: required from 'void seqan::_mapMatePairReads(TMatches&, FragmentStore&, unsigned int, Pattern&, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TReadIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TFilterSpec = Pigeonhole; TCounts = String >; TRazerSOptions = RazerSCoreOptions >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs.h:1115:30: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3252:33: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:599:38: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 599 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSCoreOptions >, RazerSMode, Pattern, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, String > >; TGenome = String, Alloc<> >; TRead = Segment, Alloc<> >, InfixSegment>; TMatchNPolicy = NMatchesAll_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2979:24: required from 'void seqan::_mapSingleReadsToContig(TMatches&, TFragmentStore&, unsigned int, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TFilterSpec = Swift > >; TCounts = String >; TRazerSOptions = RazerSCoreOptions >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3054:36: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const RazerSMode&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3146:27: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3216:31: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3343:31: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2155 | TGenomeInfix origInf(inf); | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2238 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2239 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2341 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2342 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat) [with TIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSpec = void]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2785:21: required from 'void seqan::_applyFilterOptions(Pattern >&, const TOptions&) [with TIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TPigeonholeSpec = void; TOptions = RazerSCoreOptions >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3026:24: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const RazerSMode&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3146:27: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3221:31: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3343:31: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h:518:35: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 518 | indexShape(host(pattern)) = pattern.shape; | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSCoreOptions >, RazerSMode, Pattern, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, String > >; TGenome = String, Alloc<> >; TRead = Segment, Alloc<> >, InfixSegment>; TMatchNPolicy = NMatchesAll_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2979:24: required from 'void seqan::_mapSingleReadsToContig(TMatches&, TFragmentStore&, unsigned int, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TFilterSpec = Pigeonhole; TCounts = String >; TRazerSOptions = RazerSCoreOptions >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3054:36: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const RazerSMode&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3146:27: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3221:31: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3343:31: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2155 | TGenomeInfix origInf(inf); | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2238 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2239 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2341 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2342 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = Swift > >; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:2081:73: required from 'bool seqan::windowFindBegin(Finder >&, Pattern >&, double) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:1200:29: required from 'void seqan::_mapMatePairReadsParallel(FragmentStore&, unsigned int, TThreadLocalStorages&, const String >&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >, Alloc<> >; TCounts = String >; TRazerSOptions = RazerSCoreOptions >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:1489:38: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:1657:41: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:599:38: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 599 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSCoreOptions >, RazerSMode, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, String > >; TGenome = String, Alloc<> >; TRead = Segment, Alloc<> >, InfixSegment>; TMatchNPolicy = NMatchesAll_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:296:20: required from 'void seqan::workVerification(ThreadLocalStorage >&, Job >&, const String >&) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinder = Finder, Alloc<> >, Swift > > >; TFilterPattern = Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >; TShape = Shape, UngappedShape<0> >; TOptions = RazerSCoreOptions >; TCounts = String >; TRazerSMode = RazerSMode; THitString = String, Alloc<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:751:33: required from 'void seqan::_mapSingleReadsParallelToContig(FragmentStore&, TThreadLocalStorages&, const String >&, const TContigId&, TCounts&, char, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >, Alloc<> >; TContigId = unsigned int; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:1033:44: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:1197:39: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2155 | TGenomeInfix origInf(inf); | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2238 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2239 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2341 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2342 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat) [with TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSpec = void]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2785:21: required from 'void seqan::_applyFilterOptions(Pattern >&, const TOptions&) [with TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TPigeonholeSpec = void; TOptions = RazerSCoreOptions >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:872:28: required from 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, OneGappedShape>; TOptions = RazerSCoreOptions >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:1008:40: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:1202:39: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h:518:35: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 518 | indexShape(host(pattern)) = pattern.shape; | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSCoreOptions >, RazerSMode, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, String > >; TGenome = String, Alloc<> >; TRead = Segment, Alloc<> >, InfixSegment>; TMatchNPolicy = NMatchesAll_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:296:20: required from 'void seqan::workVerification(ThreadLocalStorage >&, Job >&, const String >&) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinder = Finder, Alloc<> >, Pigeonhole >; TFilterPattern = Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >; TShape = Shape, OneGappedShape>; TOptions = RazerSCoreOptions >; TCounts = String >; TRazerSMode = RazerSMode; THitString = String, Alloc<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:751:33: required from 'void seqan::_mapSingleReadsParallelToContig(FragmentStore&, TThreadLocalStorages&, const String >&, const TContigId&, TCounts&, char, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >, Alloc<> >; TContigId = unsigned int; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:1033:44: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:1202:39: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2155 | TGenomeInfix origInf(inf); | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2238 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2239 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2341 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2342 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2896:17: required from 'void seqan::_applyFilterOptions(Pattern >&, const TOptions&) [with TIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TOptions = RazerSCoreOptions >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3026:24: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const RazerSMode&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3146:27: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3216:31: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3343:31: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 752 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSCoreOptions >, RazerSMode, Pattern, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, String > >; TGenome = String, Alloc<> >; TRead = Segment, Alloc<> >, InfixSegment>; TMatchNPolicy = NMatchesAll_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2979:24: required from 'void seqan::_mapSingleReadsToContig(TMatches&, TFragmentStore&, unsigned int, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TFilterSpec = Swift > >; TCounts = String >; TRazerSOptions = RazerSCoreOptions >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3054:36: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const RazerSMode&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3146:27: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3216:31: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3343:31: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2155 | TGenomeInfix origInf(inf); | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2238 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2239 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2341 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2342 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2896:17: required from 'void seqan::_applyFilterOptions(Pattern >&, const TOptions&) [with TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TOptions = RazerSCoreOptions >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:872:28: required from 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, GappedShape > >; TOptions = RazerSCoreOptions >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:1008:40: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:1197:39: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 752 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSCoreOptions >, RazerSMode, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, String > >; TGenome = String, Alloc<> >; TRead = Segment, Alloc<> >, InfixSegment>; TMatchNPolicy = NMatchesAll_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:296:20: required from 'void seqan::workVerification(ThreadLocalStorage >&, Job >&, const String >&) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinder = Finder, Alloc<> >, Swift > > >; TFilterPattern = Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >; TShape = Shape, GappedShape > >; TOptions = RazerSCoreOptions >; TCounts = String >; TRazerSMode = RazerSMode; THitString = String, Alloc<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:751:33: required from 'void seqan::_mapSingleReadsParallelToContig(FragmentStore&, TThreadLocalStorages&, const String >&, const TContigId&, TCounts&, char, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >, Alloc<> >; TContigId = unsigned int; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:1033:44: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:1197:39: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2155 | TGenomeInfix origInf(inf); | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2238 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2239 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2341 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2342 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = Pigeonhole; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h:969:48: required from 'bool seqan::find(Finder >&, Pattern >&, double) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs.h:696:16: required from 'void seqan::_mapMatePairReads(TMatches&, FragmentStore&, unsigned int, Pattern&, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TReadIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TFilterSpec = Pigeonhole; TCounts = String >; TRazerSOptions = RazerSCoreOptions >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs.h:1115:30: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3252:33: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:599:38: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 599 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat) [with TIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSpec = Hamming_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2785:21: required from 'void seqan::_applyFilterOptions(Pattern >&, const TOptions&) [with TIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TPigeonholeSpec = Hamming_; TOptions = RazerSCoreOptions >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3026:24: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const RazerSMode&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3146:27: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3221:31: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3343:31: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h:518:35: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 518 | indexShape(host(pattern)) = pattern.shape; | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = Swift > >; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:2081:73: required from 'bool seqan::windowFindBegin(Finder >&, Pattern >&, double) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:1200:29: required from 'void seqan::_mapMatePairReadsParallel(FragmentStore&, unsigned int, TThreadLocalStorages&, const String >&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >, Alloc<> >; TCounts = String >; TRazerSOptions = RazerSCoreOptions >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:1489:38: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:1657:41: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:599:38: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 599 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat) [with TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSpec = Hamming_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2785:21: required from 'void seqan::_applyFilterOptions(Pattern >&, const TOptions&) [with TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TPigeonholeSpec = Hamming_; TOptions = RazerSCoreOptions >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:872:28: required from 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, OneGappedShape>; TOptions = RazerSCoreOptions >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:1008:40: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:1202:39: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h:518:35: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 518 | indexShape(host(pattern)) = pattern.shape; | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2896:17: required from 'void seqan::_applyFilterOptions(Pattern >&, const TOptions&) [with TIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TOptions = RazerSCoreOptions >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3026:24: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const RazerSMode&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3146:27: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3216:31: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3343:31: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 752 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2896:17: required from 'void seqan::_applyFilterOptions(Pattern >&, const TOptions&) [with TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TOptions = RazerSCoreOptions >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:872:28: required from 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, GappedShape > >; TOptions = RazerSCoreOptions >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:1008:40: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:1197:39: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 752 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSCoreOptions >, RazerSMode, Pattern, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, String > >; TGenome = String, Alloc<> >; TRead = Segment, Alloc<> >, InfixSegment>; TMatchNPolicy = NMatchesNone_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2979:24: required from 'void seqan::_mapSingleReadsToContig(TMatches&, TFragmentStore&, unsigned int, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TFilterSpec = Swift > >; TCounts = String >; TRazerSOptions = RazerSCoreOptions >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3054:36: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const RazerSMode&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3146:27: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3216:31: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3343:31: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2155 | TGenomeInfix origInf(inf); | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2238 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2239 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2341 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2342 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSCoreOptions >, RazerSMode, Pattern, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, String > >; TGenome = String, Alloc<> >; TRead = Segment, Alloc<> >, InfixSegment>; TMatchNPolicy = NMatchesNone_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2979:24: required from 'void seqan::_mapSingleReadsToContig(TMatches&, TFragmentStore&, unsigned int, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TFilterSpec = Pigeonhole; TCounts = String >; TRazerSOptions = RazerSCoreOptions >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3054:36: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const RazerSMode&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TMatchNPolicy = NMatchesNone_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3146:27: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3221:31: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3343:31: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2155 | TGenomeInfix origInf(inf); | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2238 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2239 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2341 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2342 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSCoreOptions >, RazerSMode, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, String > >; TGenome = String, Alloc<> >; TRead = Segment, Alloc<> >, InfixSegment>; TMatchNPolicy = NMatchesNone_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:296:20: required from 'void seqan::workVerification(ThreadLocalStorage >&, Job >&, const String >&) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinder = Finder, Alloc<> >, Swift > > >; TFilterPattern = Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >; TShape = Shape, UngappedShape<0> >; TOptions = RazerSCoreOptions >; TCounts = String >; TRazerSMode = RazerSMode; THitString = String, Alloc<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:751:33: required from 'void seqan::_mapSingleReadsParallelToContig(FragmentStore&, TThreadLocalStorages&, const String >&, const TContigId&, TCounts&, char, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >, Alloc<> >; TContigId = unsigned int; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:1033:44: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:1197:39: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2155 | TGenomeInfix origInf(inf); | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2238 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2239 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2341 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2342 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSCoreOptions >, RazerSMode, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, String > >; TGenome = String, Alloc<> >; TRead = Segment, Alloc<> >, InfixSegment>; TMatchNPolicy = NMatchesNone_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:296:20: required from 'void seqan::workVerification(ThreadLocalStorage >&, Job >&, const String >&) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinder = Finder, Alloc<> >, Pigeonhole >; TFilterPattern = Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >; TShape = Shape, OneGappedShape>; TOptions = RazerSCoreOptions >; TCounts = String >; TRazerSMode = RazerSMode; THitString = String, Alloc<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:751:33: required from 'void seqan::_mapSingleReadsParallelToContig(FragmentStore&, TThreadLocalStorages&, const String >&, const TContigId&, TCounts&, char, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >, Alloc<> >; TContigId = unsigned int; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:1033:44: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:1202:39: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2155 | TGenomeInfix origInf(inf); | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2238 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2239 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2341 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2342 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSCoreOptions >, RazerSMode, Pattern, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, String > >; TGenome = String, Alloc<> >; TRead = Segment, Alloc<> >, InfixSegment>; TMatchNPolicy = NMatchesNone_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2979:24: required from 'void seqan::_mapSingleReadsToContig(TMatches&, TFragmentStore&, unsigned int, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TFilterSpec = Swift > >; TCounts = String >; TRazerSOptions = RazerSCoreOptions >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3054:36: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const RazerSMode&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3146:27: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3216:31: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3343:31: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2155 | TGenomeInfix origInf(inf); | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2238 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2239 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2341 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2342 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSCoreOptions >, RazerSMode, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, String > >; TGenome = String, Alloc<> >; TRead = Segment, Alloc<> >, InfixSegment>; TMatchNPolicy = NMatchesNone_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:296:20: required from 'void seqan::workVerification(ThreadLocalStorage >&, Job >&, const String >&) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinder = Finder, Alloc<> >, Swift > > >; TFilterPattern = Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >; TShape = Shape, GappedShape > >; TOptions = RazerSCoreOptions >; TCounts = String >; TRazerSMode = RazerSMode; THitString = String, Alloc<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:751:33: required from 'void seqan::_mapSingleReadsParallelToContig(FragmentStore&, TThreadLocalStorages&, const String >&, const TContigId&, TCounts&, char, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >, Alloc<> >; TContigId = unsigned int; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:1033:44: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:1197:39: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2155 | TGenomeInfix origInf(inf); | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2238 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2239 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2341 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2342 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:90: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps, Alloc<> >, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; TDifference = long int]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:679:35: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, const Tag&) [with T = Gaps, Alloc<> >, AnchorGaps, Alloc<> > > >; TPos = long int; TTag = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:661:16: required from 'typename seqan::Iterator::Type>::Type seqan::iter(T&, TPos) [with T = Gaps, Alloc<> >, AnchorGaps, Alloc<> > > >; TPos = long int; typename Iterator::Type>::Type = Iter, Alloc<> >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_anchor.h:466:20: required from 'void seqan::insertGaps(Gaps >&, TPosition, TCount) [with TSequence = String, Alloc<> >; TGapAnchors = String, Alloc<> >; TPosition = long int; TCount = unsigned int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_base.h:513:15: required from 'void seqan::insertGap(Gaps&, TPosition) [with TSequence = String, Alloc<> >; TSpec = AnchorGaps, Alloc<> > >; TPosition = long int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2067:42: required from 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&) [with TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig; TScore = Score >; TShrinkMatches = True]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1221:40: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1301:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1345:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 773 | Iter > > result = lhs; | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 775 | return result; | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:385:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:395:32: required from 'seqan::Finder >::Finder(THaystack&, TRepeatSize, TPeriodSize) [with TRepeatSize = int; TPeriodSize = int; THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs.h:680:20: required from 'void seqan::_mapMatePairReads(TMatches&, FragmentStore&, unsigned int, Pattern&, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TReadIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TFilterSpec = Swift > >; TCounts = String >; TRazerSOptions = RazerSCoreOptions >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs.h:1115:30: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3247:33: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:343:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 343 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::host(Finder&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = Pigeonhole; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h:932:36: required from 'bool seqan::_firstNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Pigeonhole >; TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h:975:34: required from 'bool seqan::find(Finder >&, Pattern >&, double) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs.h:696:16: required from 'void seqan::_mapMatePairReads(TMatches&, FragmentStore&, unsigned int, Pattern&, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TReadIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TFilterSpec = Pigeonhole; TCounts = String >; TRazerSOptions = RazerSCoreOptions >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs.h:1115:30: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3252:33: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:585:38: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 585 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, TIntegral) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag; TIntegral = long unsigned int]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h:941:46: required from 'bool seqan::_firstNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Pigeonhole >; TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h:975:34: required from 'bool seqan::find(Finder >&, Pattern >&, double) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs.h:696:16: required from 'void seqan::_mapMatePairReads(TMatches&, FragmentStore&, unsigned int, Pattern&, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TReadIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TFilterSpec = Pigeonhole; TCounts = String >; TRazerSOptions = RazerSCoreOptions >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs.h:1115:30: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3252:33: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:577:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 577 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::host(Finder&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = Swift > >; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1866:36: required from 'bool seqan::_firstNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:2088:30: required from 'bool seqan::windowFindBegin(Finder >&, Pattern >&, double) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:1200:29: required from 'void seqan::_mapMatePairReadsParallel(FragmentStore&, unsigned int, TThreadLocalStorages&, const String >&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >, Alloc<> >; TCounts = String >; TRazerSOptions = RazerSCoreOptions >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:1489:38: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:1657:41: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:585:38: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 585 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::host(Finder&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = Pigeonhole; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h:932:36: required from 'bool seqan::_firstNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Pigeonhole >; TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h:975:34: required from 'bool seqan::find(Finder >&, Pattern >&, double) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs.h:696:16: required from 'void seqan::_mapMatePairReads(TMatches&, FragmentStore&, unsigned int, Pattern&, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TReadIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TFilterSpec = Pigeonhole; TCounts = String >; TRazerSOptions = RazerSCoreOptions >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs.h:1115:30: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3252:33: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:585:38: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 585 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::host(Finder&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = Swift > >; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1866:36: required from 'bool seqan::_firstNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:2088:30: required from 'bool seqan::windowFindBegin(Finder >&, Pattern >&, double) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:1200:29: required from 'void seqan::_mapMatePairReadsParallel(FragmentStore&, unsigned int, TThreadLocalStorages&, const String >&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >, Alloc<> >; TCounts = String >; TRazerSOptions = RazerSCoreOptions >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:1489:38: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:1657:41: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:585:38: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 585 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/cigar.h:209:24: required from 'unsigned int seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String >; TGaps1 = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGaps2 = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/cigar.h:507:35: required from 'void seqan::_alignAndGetCigarString(TCigar&, TMDString&, const TContigInfix&, const TReadSeq&, TAlignedRead&, TErrors&, TAlignFunctor&) [with TCigar = String >; TMDString = String >; TContigInfix = Segment, Alloc<> >, InfixSegment>; TReadSeq = Segment, Alloc<> >, InfixSegment>; TAlignedRead = const AlignedReadStoreElement, void>; TErrors = int; TAlignFunctor = BamAlignFunctorEditDistance]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/cigar.h:529:32: required from 'void seqan::alignAndGetCigarString(TCigar&, TMDString&, const TContig&, const TReadSeq&, TAlignedRead&, TErrors&, TAlignFunctor&) [with TCigar = String >; TMDString = String >; TContig = ContigStoreElement, Alloc<> >, GapAnchor, void>; TReadSeq = Segment, Alloc<> >, InfixSegment>; TAlignedRead = const AlignedReadStoreElement, void>; TErrors = int; TAlignFunctor = BamAlignFunctorEditDistance]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:905:27: required from 'void seqan::setPrimaryMatch(BamAlignmentRecord&, FragmentStore&, const TAlignedRead&, const TAlignQuality&, TBamIOFunctor&, bool) [with TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig; TAlignedRead = AlignedReadStoreElement, void>; TAlignQuality = AlignQualityStoreElement; TBamIOFunctor = BamAlignFunctorEditDistance]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorEditDistance]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1210:32: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1301:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1345:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:205:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 205 | return TProxy(it); | ^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_iterator.h:87: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]' 88 | Proxy(TIterator const _it) | ~~~~~~~~~~~~~~~~^~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/cigar.h:209:39: required from 'unsigned int seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String >; TGaps1 = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGaps2 = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/cigar.h:507:35: required from 'void seqan::_alignAndGetCigarString(TCigar&, TMDString&, const TContigInfix&, const TReadSeq&, TAlignedRead&, TErrors&, TAlignFunctor&) [with TCigar = String >; TMDString = String >; TContigInfix = Segment, Alloc<> >, InfixSegment>; TReadSeq = Segment, Alloc<> >, InfixSegment>; TAlignedRead = const AlignedReadStoreElement, void>; TErrors = int; TAlignFunctor = BamAlignFunctorEditDistance]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/cigar.h:529:32: required from 'void seqan::alignAndGetCigarString(TCigar&, TMDString&, const TContig&, const TReadSeq&, TAlignedRead&, TErrors&, TAlignFunctor&) [with TCigar = String >; TMDString = String >; TContig = ContigStoreElement, Alloc<> >, GapAnchor, void>; TReadSeq = Segment, Alloc<> >, InfixSegment>; TAlignedRead = const AlignedReadStoreElement, void>; TErrors = int; TAlignFunctor = BamAlignFunctorEditDistance]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:905:27: required from 'void seqan::setPrimaryMatch(BamAlignmentRecord&, FragmentStore&, const TAlignedRead&, const TAlignQuality&, TBamIOFunctor&, bool) [with TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig; TAlignedRead = AlignedReadStoreElement, void>; TAlignQuality = AlignQualityStoreElement; TBamIOFunctor = BamAlignFunctorEditDistance]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorEditDistance]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1210:32: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1301:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1345:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:205:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 205 | return TProxy(it); | ^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]' 88 | Proxy(TIterator const _it) | ~~~~~~~~~~~~~~~~^~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, InfixSegment>, ModView > > >, Tag >, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy, Alloc<> >, InfixSegment>, ModView > > >, Tag >, AnchorGaps > > >, GapsIterator > > > > > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, InfixSegment>, ModView > > >, Tag >, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy, Alloc<> >, InfixSegment>, ModView > > >, Tag >, AnchorGaps > > >, GapsIterator > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/cigar.h:209:39: required from 'unsigned int seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String >; TGaps1 = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGaps2 = Gaps, Alloc<> >, InfixSegment>, ModView > > >, Tag >, AnchorGaps > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/cigar.h:507:35: required from 'void seqan::_alignAndGetCigarString(TCigar&, TMDString&, const TContigInfix&, const TReadSeq&, TAlignedRead&, TErrors&, TAlignFunctor&) [with TCigar = String >; TMDString = String >; TContigInfix = Segment, Alloc<> >, InfixSegment>; TReadSeq = ModifiedString, Alloc<> >, InfixSegment>, ModView > > >, Tag >; TAlignedRead = const AlignedReadStoreElement, void>; TErrors = int; TAlignFunctor = BamAlignFunctorEditDistance]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/cigar.h:534:32: required from 'void seqan::alignAndGetCigarString(TCigar&, TMDString&, const TContig&, const TReadSeq&, TAlignedRead&, TErrors&, TAlignFunctor&) [with TCigar = String >; TMDString = String >; TContig = ContigStoreElement, Alloc<> >, GapAnchor, void>; TReadSeq = Segment, Alloc<> >, InfixSegment>; TAlignedRead = const AlignedReadStoreElement, void>; TErrors = int; TAlignFunctor = BamAlignFunctorEditDistance]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:905:27: required from 'void seqan::setPrimaryMatch(BamAlignmentRecord&, FragmentStore&, const TAlignedRead&, const TAlignQuality&, TBamIOFunctor&, bool) [with TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig; TAlignedRead = AlignedReadStoreElement, void>; TAlignQuality = AlignQualityStoreElement; TBamIOFunctor = BamAlignFunctorEditDistance]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorEditDistance]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1210:32: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1301:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1345:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:205:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 205 | return TProxy(it); | ^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]' 88 | Proxy(TIterator const _it) | ~~~~~~~~~~~~~~~~^~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:520:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:663:20: required from 'typename seqan::Iterator, const seqan::Tag >::Type seqan::end(ModifiedString&, Tag) [with THost = const Segment, Alloc<> >, InfixSegment>; TSpec = ModView > >; TTagSpec = Rooted_; typename Iterator, const Tag >::Type = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, ModView > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_reverse.h:458:102: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(const ModifiedString >&, Tag) [with THost = ModifiedString, Alloc<> >, InfixSegment>, ModView > > >; TTagSpec = Standard_; typename Iterator >, const Tag >::Type = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, ModView > > >, Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:811:66: required from 'void seqan::_fillBamSeqAndQual(TSeq&, TQual&, const TRead&) [with TSeq = String, Alloc<> >; TQual = String >; TRead = ModifiedString, Alloc<> >, InfixSegment>, ModView > > >, Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:936:31: required from 'void seqan::setPrimaryMatch(BamAlignmentRecord&, FragmentStore&, const TAlignedRead&, const TAlignQuality&, TBamIOFunctor&, bool) [with TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig; TAlignedRead = AlignedReadStoreElement, void>; TAlignQuality = AlignQualityStoreElement; TBamIOFunctor = BamAlignFunctorEditDistance]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorEditDistance]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1210:32: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1301:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1345:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 486 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:105: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment, Alloc<> >, InfixSegment>&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:398:24: required from 'void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, UngappedShape<0> >; TOptions = RazerSCoreOptions >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:1463:40: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1342 | TTargetValue temp_copy(std::forward(_value)); //temp copy because resize could invalidate _value | ^~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = const Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = const Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:859:24: required from 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, UngappedShape<0> >; TOptions = RazerSCoreOptions >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:1008:40: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1342 | TTargetValue temp_copy(std::forward(_value)); //temp copy because resize could invalidate _value | ^~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:205:12: required from 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/cigar.h:209:24: required from 'unsigned int seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String >; TGaps1 = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGaps2 = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/cigar.h:507:35: required from 'void seqan::_alignAndGetCigarString(TCigar&, TMDString&, const TContigInfix&, const TReadSeq&, TAlignedRead&, TErrors&, TAlignFunctor&) [with TCigar = String >; TMDString = String >; TContigInfix = Segment, Alloc<> >, InfixSegment>; TReadSeq = Segment, Alloc<> >, InfixSegment>; TAlignedRead = const AlignedReadStoreElement, void>; TErrors = int; TAlignFunctor = BamAlignFunctorEditDistance]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/cigar.h:529:32: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorEditDistance]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1210:32: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1301:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1345:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:89:15: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 89 | : data_iterator(_it) | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:205:12: required from 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/cigar.h:209:39: required from 'unsigned int seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String >; TGaps1 = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGaps2 = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/cigar.h:507:35: required from 'void seqan::_alignAndGetCigarString(TCigar&, TMDString&, const TContigInfix&, const TReadSeq&, TAlignedRead&, TErrors&, TAlignFunctor&) [with TCigar = String >; TMDString = String >; TContigInfix = Segment, Alloc<> >, InfixSegment>; TReadSeq = Segment, Alloc<> >, InfixSegment>; TAlignedRead = const AlignedReadStoreElement, void>; TErrors = int; TAlignFunctor = BamAlignFunctorEditDistance]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/cigar.h:529:32: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorEditDistance]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1210:32: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1301:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1345:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:89:15: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 89 | : data_iterator(_it) | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:205:12: required from 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, InfixSegment>, ModView > > >, Tag >, AnchorGaps > > >; TGapAnchors = String >; typename Reference > > >::Type = Proxy, Alloc<> >, InfixSegment>, ModView > > >, Tag >, AnchorGaps > > >, GapsIterator > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, InfixSegment>, ModView > > >, Tag >, AnchorGaps > > >; TSpec = GapsIterator > > >; typename Reference >::Type = Proxy, Alloc<> >, InfixSegment>, ModView > > >, Tag >, AnchorGaps > > >, GapsIterator > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/cigar.h:209:39: required from 'unsigned int seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String >; TGaps1 = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGaps2 = Gaps, Alloc<> >, InfixSegment>, ModView > > >, Tag >, AnchorGaps > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/cigar.h:507:35: required from 'void seqan::_alignAndGetCigarString(TCigar&, TMDString&, const TContigInfix&, const TReadSeq&, TAlignedRead&, TErrors&, TAlignFunctor&) [with TCigar = String >; TMDString = String >; TContigInfix = Segment, Alloc<> >, InfixSegment>; TReadSeq = ModifiedString, Alloc<> >, InfixSegment>, ModView > > >, Tag >; TAlignedRead = const AlignedReadStoreElement, void>; TErrors = int; TAlignFunctor = BamAlignFunctorEditDistance]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/cigar.h:534:32: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorEditDistance]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1210:32: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1301:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1345:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:89:15: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >&)' is deprecated [-Wdeprecated-copy] 89 | : data_iterator(_it) | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >, seqan::AnchorGaps > > >, seqan::GapsIterator > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >, seqan::AnchorGaps > > >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_fundamental.h:72, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSource = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; typename DisableIf > >::Type = void]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TValue2 = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; typename Reference > >::Type = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:339:17: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Swift > >; typename Host >::Type = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs.h:654:36: required from 'void seqan::_mapMatePairReads(TMatches&, FragmentStore&, unsigned int, Pattern&, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TReadIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TFilterSpec = Swift > >; TCounts = String >; TRazerSOptions = RazerSCoreOptions >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs.h:1115:30: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 110 | target = source; | ~~~~~~~^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:92: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::UngappedShape<0> >]' 143 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:512:23: required from 'typename seqan::Iterator >::Type seqan::end(T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_reverse.h:469:24: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(ModifiedString >&, Tag) [with THost = Segment, Alloc<> >, InfixSegment>; TTagSpec = Rooted_; typename Iterator >, const Tag >::Type = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:301:30: required from 'seqan::Finder::Finder(THaystack&) [with THaystack = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2241:41: required from 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSCoreOptions >, RazerSMode, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, String > >; TGenome = String, Alloc<> >; TRead = Segment, Alloc<> >, InfixSegment>; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs.h:793:40: required from 'void seqan::_mapMatePairReads(TMatches&, FragmentStore&, unsigned int, Pattern&, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TReadIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TFilterSpec = Swift > >; TCounts = String >; TRazerSOptions = RazerSCoreOptions >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs.h:1115:30: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:478:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 478 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSource = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; typename DisableIf > >::Type = void]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TValue2 = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; typename Reference > >::Type = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:339:17: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Pigeonhole; typename Host >::Type = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2795:64: required from 'void seqan::_applyFilterOptions(Pattern >&, const TOptions&) [with TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TPigeonholeSpec = void; TOptions = RazerSCoreOptions >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs.h:1088:24: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 110 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>]' 143 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:86:11: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 86 | class Index > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' first required here 110 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSource = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; typename DisableIf > >::Type = void]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TValue2 = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; typename Reference > >::Type = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:339:17: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Swift > >; typename Host >::Type = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:852:30: required from 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, UngappedShape<0> >; TOptions = RazerSCoreOptions >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:1008:40: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::UngappedShape<0> >]' 143 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSource = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; typename DisableIf > >::Type = void]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TValue2 = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; typename Reference > >::Type = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:339:17: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Pigeonhole; typename Host >::Type = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:852:30: required from 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, OneGappedShape>; TOptions = RazerSCoreOptions >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:1008:40: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 110 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>]' 143 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:86:11: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 86 | class Index > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' first required here 110 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSource = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; typename DisableIf > >::Type = void]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TValue2 = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; typename Reference > >::Type = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:339:17: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSpec = Swift > >; typename Host >::Type = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs.h:654:36: required from 'void seqan::_mapMatePairReads(TMatches&, FragmentStore&, unsigned int, Pattern&, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TReadIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TFilterSpec = Swift > >; TCounts = String >; TRazerSOptions = RazerSCoreOptions >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs.h:1115:30: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::GappedShape > >]' 143 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:86:11: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 86 | class Index > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' first required here 110 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSource = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; typename DisableIf > >::Type = void]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TValue2 = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; typename Reference > >::Type = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:339:17: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSpec = Swift > >; typename Host >::Type = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:852:30: required from 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, GappedShape > >; TOptions = RazerSCoreOptions >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:1008:40: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::GappedShape > >]' 143 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:86:11: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 86 | class Index > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' first required here 110 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = void; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:989:66: required from 'bool seqan::_patternInitSmallStateBanded(TFinder&, const TNeedle2&, PatternState_, True, TFindBeginPatternSpec> >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, void>; TNeedle = const Segment, Alloc<> >, InfixSegment>; TNeedle2 = Segment, Alloc<> >, InfixSegment>; TSpec = FindInfix; TFinderCSP = NMatchesAll_; TPatternCSP = NMatchesAll_; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1181:44: required from 'bool seqan::_stateInit(TFinder&, const TNeedle&, PatternState_, True, TFindBeginPatternSpec> >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, void>; TNeedle = Segment, Alloc<> >, InfixSegment>; TNeedle2 = const Segment, Alloc<> >, InfixSegment>; TSpec = FindInfix; TFinderCSP = NMatchesAll_; TPatternCSP = NMatchesAll_; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1535:24: required from 'bool seqan::find(TFinder&, const TNeedle&, PatternState_, True, TFindBeginPatternSpec> >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, void>; TNeedle = Segment, Alloc<> >, InfixSegment>; TNeedle2 = const Segment, Alloc<> >, InfixSegment>; TSpec = FindInfix; TFinderCSP = NMatchesAll_; TPatternCSP = NMatchesAll_; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1646:16: required from 'bool seqan::find(TFinder&, const TNeedle&, PatternState_ >&, int) [with TFinder = Finder, Alloc<> >, InfixSegment>, void>; TNeedle = Segment, Alloc<> >, InfixSegment>; TNeedle2 = const Segment, Alloc<> >, InfixSegment>; TSpec = AlignTextBanded; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2177:16: required from 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSCoreOptions >, RazerSMode, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, String > >; TGenome = String, Alloc<> >; TRead = Segment, Alloc<> >, InfixSegment>; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs.h:793:40: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:599:38: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 599 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:61: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_iterator.h: In instantiation of 'typename seqan::Container >::Type seqan::container(ModifiedIterator&) [with THost = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; TSpec = Tag; typename Container >::Type = ModifiedString, Alloc<> >, InfixSegment>, Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_interface.h:430:24: required from 'void seqan::goEnd(TIterator&) [with TIterator = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:737:10: required from 'void seqan::goEnd(Finder&) [with THaystack = ModifiedString, Alloc<> >, InfixSegment>, Tag >; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1537:18: required from 'bool seqan::find(TFinder&, const TNeedle&, PatternState_, True, TFindBeginPatternSpec> >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Tag >, void>; TNeedle = ModifiedString, Alloc<> >, InfixSegment>, Tag >; TNeedle2 = ModifiedString, Alloc<> >, InfixSegment>, Tag >; TSpec = FindPrefix; TFinderCSP = NMatchesAll_; TPatternCSP = NMatchesAll_; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1646:16: required from 'bool seqan::find(TFinder&, const TNeedle&, PatternState_ >&, int) [with TFinder = Finder, Alloc<> >, InfixSegment>, Tag >, void>; TNeedle = ModifiedString, Alloc<> >, InfixSegment>, Tag >; TNeedle2 = ModifiedString, Alloc<> >, InfixSegment>, Tag >; TSpec = AlignTextBanded; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2245:32: required from 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSCoreOptions >, RazerSMode, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, String > >; TGenome = String, Alloc<> >; TRead = Segment, Alloc<> >, InfixSegment>; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs.h:793:40: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_iterator.h:278:16: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 278 | TContainer cont(container(host(me))); | ^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSource = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; typename DisableIf > >::Type = void]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TValue2 = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; typename Reference > >::Type = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:339:17: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Swift > >; typename Host >::Type = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2948:40: required from 'void seqan::_mapSingleReadsToContig(TMatches&, TFragmentStore&, unsigned int, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TFilterSpec = Swift > >; TCounts = String >; TRazerSOptions = RazerSCoreOptions >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3054:36: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3343:31: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 110 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::UngappedShape<0> >]' 143 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSource = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; typename DisableIf > >::Type = void]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TValue2 = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; typename Reference > >::Type = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:339:17: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Pigeonhole; typename Host >::Type = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2795:64: required from 'void seqan::_applyFilterOptions(Pattern >&, const TOptions&) [with TIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TPigeonholeSpec = void; TOptions = RazerSCoreOptions >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3026:24: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3343:31: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 110 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>]' 143 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:86:11: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 86 | class Index > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' first required here 110 | target = source; | ~~~~~~~^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_fundamental.h:82: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1348:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment, Alloc<> >, InfixSegment>&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:398:24: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1354:27: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment, Alloc<> >, InfixSegment>&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:398:24: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; typename DisableIf > >::Type = void]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_paired_match_filter.h:160:64: required from 'bool seqan::processRead(PairedMatchFilter&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet, Alloc<> >, Owner > >; TCallback = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:962:32: required from 'void seqan::writeBackToLocal(ThreadLocalStorage >&, String&, bool) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinderL = Finder, Alloc<> >, Pigeonhole >; TFilterFinderR = Finder, Alloc<> >, InfixSegment>, Pigeonhole >; TFilterPattern = Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >; TShape = Shape, OneGappedShape>; TOptions = RazerSCoreOptions >; TCounts = String >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:1314:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h:318:11: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 318 | class Pattern > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:84:7: note: synthesized method 'seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >& seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >::operator=(const seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >&)' first required here 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >& seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::operator=(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&)' first required here 110 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = const Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1348:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = const Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = const Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:859:24: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = const Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1354:27: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = const Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = const Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:859:24: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; typename DisableIf > >::Type = void]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_match_filter.h:251:20: required from 'bool seqan::processRead(MatchFilter&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet, Alloc<> >, Owner > >; TCallback = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:466:36: required from 'void seqan::writeBackToLocal(ThreadLocalStorage >&, String >&, bool) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinder = Finder, Alloc<> >, Pigeonhole >; TFilterPattern = Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >; TShape = Shape, OneGappedShape>; TOptions = RazerSCoreOptions >; TCounts = String >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:769:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h:318:11: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 318 | class Pattern > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:110:7: note: synthesized method 'seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >& seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >::operator=(const seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >&)' first required here 110 | class ThreadLocalStorage< | ^~~~~~~~~~~~~~~~~~~ 111 | MapSingleReads< | ~~~~~~~~~~~~~~~ 112 | TMatches_, | ~~~~~~~~~~ 113 | TFragmentStore, | ~~~~~~~~~~~~~~~ 114 | TFilterFinder_, | ~~~~~~~~~~~~~~~ 115 | TFilterPattern_, | ~~~~~~~~~~~~~~~~ 116 | TShape, | ~~~~~~~ 117 | TOptions, | ~~~~~~~~~ 118 | TCounts, | ~~~~~~~~ 119 | TRazerSMode> > | ~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:110:7: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >& seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::operator=(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&)' first required here 110 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSource = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; typename DisableIf > >::Type = void]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TValue2 = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; typename Reference > >::Type = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:339:17: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Swift > >; typename Host >::Type = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:2948:40: required from 'void seqan::_mapSingleReadsToContig(TMatches&, TFragmentStore&, unsigned int, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TFilterSpec = Swift > >; TCounts = String >; TRazerSOptions = RazerSCoreOptions >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3054:36: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3343:31: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::GappedShape > >]' 143 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:86:11: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 86 | class Index > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' first required here 110 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; typename DisableIf > >::Type = void]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_paired_match_filter.h:160:64: required from 'bool seqan::processRead(PairedMatchFilter&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet, Alloc<> >, Owner > >; TCallback = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:962:32: required from 'void seqan::writeBackToLocal(ThreadLocalStorage >&, String&, bool) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinderL = Finder, Alloc<> >, Swift > > >; TFilterFinderR = Finder, Alloc<> >, InfixSegment>, Swift > > >; TFilterPattern = Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >; TShape = Shape, GappedShape > >; TOptions = RazerSCoreOptions >; TCounts = String >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:1314:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:519:11: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 519 | class Pattern > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:84:7: note: synthesized method 'seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >& seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >::operator=(const seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >&)' first required here 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >& seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::operator=(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&)' first required here 110 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; typename DisableIf > >::Type = void]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_match_filter.h:251:20: required from 'bool seqan::processRead(MatchFilter&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet, Alloc<> >, Owner > >; TCallback = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:466:36: required from 'void seqan::writeBackToLocal(ThreadLocalStorage >&, String >&, bool) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinder = Finder, Alloc<> >, Swift > > >; TFilterPattern = Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >; TShape = Shape, GappedShape > >; TOptions = RazerSCoreOptions >; TCounts = String >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:769:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:519:11: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 519 | class Pattern > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:110:7: note: synthesized method 'seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >& seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >::operator=(const seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >&)' first required here 110 | class ThreadLocalStorage< | ^~~~~~~~~~~~~~~~~~~ 111 | MapSingleReads< | ~~~~~~~~~~~~~~~ 112 | TMatches_, | ~~~~~~~~~~ 113 | TFragmentStore, | ~~~~~~~~~~~~~~~ 114 | TFilterFinder_, | ~~~~~~~~~~~~~~~ 115 | TFilterPattern_, | ~~~~~~~~~~~~~~~~ 116 | TShape, | ~~~~~~~ 117 | TOptions, | ~~~~~~~~~ 118 | TCounts, | ~~~~~~~~ 119 | TRazerSMode> > | ~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:110:7: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >& seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::operator=(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&)' first required here 110 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; typename DisableIf > >::Type = void]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_paired_match_filter.h:160:64: required from 'bool seqan::processRead(PairedMatchFilter&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet, Alloc<> >, Owner > >; TCallback = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:962:32: required from 'void seqan::writeBackToLocal(ThreadLocalStorage >&, String&, bool) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinderL = Finder, Alloc<> >, Pigeonhole >; TFilterFinderR = Finder, Alloc<> >, InfixSegment>, Pigeonhole >; TFilterPattern = Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >; TShape = Shape, OneGappedShape>; TOptions = RazerSCoreOptions >; TCounts = String >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:1314:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h:318:11: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 318 | class Pattern > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:84:7: note: synthesized method 'seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >& seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >::operator=(const seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >&)' first required here 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >& seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::operator=(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&)' first required here 110 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; typename DisableIf > >::Type = void]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_match_filter.h:251:20: required from 'bool seqan::processRead(MatchFilter&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet, Alloc<> >, Owner > >; TCallback = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:466:36: required from 'void seqan::writeBackToLocal(ThreadLocalStorage >&, String >&, bool) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinder = Finder, Alloc<> >, Pigeonhole >; TFilterPattern = Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >; TShape = Shape, OneGappedShape>; TOptions = RazerSCoreOptions >; TCounts = String >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:769:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h:318:11: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 318 | class Pattern > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:110:7: note: synthesized method 'seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >& seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >::operator=(const seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >&)' first required here 110 | class ThreadLocalStorage< | ^~~~~~~~~~~~~~~~~~~ 111 | MapSingleReads< | ~~~~~~~~~~~~~~~ 112 | TMatches_, | ~~~~~~~~~~ 113 | TFragmentStore, | ~~~~~~~~~~~~~~~ 114 | TFilterFinder_, | ~~~~~~~~~~~~~~~ 115 | TFilterPattern_, | ~~~~~~~~~~~~~~~~ 116 | TShape, | ~~~~~~~ 117 | TOptions, | ~~~~~~~~~ 118 | TCounts, | ~~~~~~~~ 119 | TRazerSMode> > | ~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:110:7: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >& seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::operator=(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&)' first required here 110 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; typename DisableIf > >::Type = void]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_paired_match_filter.h:160:64: required from 'bool seqan::processRead(PairedMatchFilter&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet, Alloc<> >, Owner > >; TCallback = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:962:32: required from 'void seqan::writeBackToLocal(ThreadLocalStorage >&, String&, bool) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinderL = Finder, Alloc<> >, Swift > > >; TFilterFinderR = Finder, Alloc<> >, InfixSegment>, Swift > > >; TFilterPattern = Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >; TShape = Shape, GappedShape > >; TOptions = RazerSCoreOptions >; TCounts = String >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:1314:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:519:11: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 519 | class Pattern > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:84:7: note: synthesized method 'seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >& seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >::operator=(const seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >&)' first required here 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >& seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::operator=(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&)' first required here 110 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; typename DisableIf > >::Type = void]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_match_filter.h:251:20: required from 'bool seqan::processRead(MatchFilter&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet, Alloc<> >, Owner > >; TCallback = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:466:36: required from 'void seqan::writeBackToLocal(ThreadLocalStorage >&, String >&, bool) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinder = Finder, Alloc<> >, Swift > > >; TFilterPattern = Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >; TShape = Shape, GappedShape > >; TOptions = RazerSCoreOptions >; TCounts = String >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:769:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:519:11: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 519 | class Pattern > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:110:7: note: synthesized method 'seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >& seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >::operator=(const seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >&)' first required here 110 | class ThreadLocalStorage< | ^~~~~~~~~~~~~~~~~~~ 111 | MapSingleReads< | ~~~~~~~~~~~~~~~ 112 | TMatches_, | ~~~~~~~~~~ 113 | TFragmentStore, | ~~~~~~~~~~~~~~~ 114 | TFilterFinder_, | ~~~~~~~~~~~~~~~ 115 | TFilterPattern_, | ~~~~~~~~~~~~~~~~ 116 | TShape, | ~~~~~~~ 117 | TOptions, | ~~~~~~~~~ 118 | TCounts, | ~~~~~~~~ 119 | TRazerSMode> > | ~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:110:7: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >& seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::operator=(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&)' first required here 110 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; typename DisableIf > >::Type = void]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_paired_match_filter.h:160:64: required from 'bool seqan::processRead(PairedMatchFilter&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet, Alloc<> >, Owner > >; TCallback = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:962:32: required from 'void seqan::writeBackToLocal(ThreadLocalStorage >&, String&, bool) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinderL = Finder, Alloc<> >, Pigeonhole >; TFilterFinderR = Finder, Alloc<> >, InfixSegment>, Pigeonhole >; TFilterPattern = Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >; TShape = Shape, OneGappedShape>; TOptions = RazerSCoreOptions >; TCounts = String >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:1314:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >& seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::operator=(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&)' first required here 110 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; typename DisableIf > >::Type = void]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_match_filter.h:251:20: required from 'bool seqan::processRead(MatchFilter&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet, Alloc<> >, Owner > >; TCallback = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:466:36: required from 'void seqan::writeBackToLocal(ThreadLocalStorage >&, String >&, bool) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinder = Finder, Alloc<> >, Pigeonhole >; TFilterPattern = Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >; TShape = Shape, OneGappedShape>; TOptions = RazerSCoreOptions >; TCounts = String >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:769:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:110:7: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 110 | class ThreadLocalStorage< | ^~~~~~~~~~~~~~~~~~~ 111 | MapSingleReads< | ~~~~~~~~~~~~~~~ 112 | TMatches_, | ~~~~~~~~~~ 113 | TFragmentStore, | ~~~~~~~~~~~~~~~ 114 | TFilterFinder_, | ~~~~~~~~~~~~~~~ 115 | TFilterPattern_, | ~~~~~~~~~~~~~~~~ 116 | TShape, | ~~~~~~~ 117 | TOptions, | ~~~~~~~~~ 118 | TCounts, | ~~~~~~~~ 119 | TRazerSMode> > | ~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >& seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::operator=(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&)' first required here 110 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; typename DisableIf > >::Type = void]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_paired_match_filter.h:160:64: required from 'bool seqan::processRead(PairedMatchFilter&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet, Alloc<> >, Owner > >; TCallback = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:962:32: required from 'void seqan::writeBackToLocal(ThreadLocalStorage >&, String&, bool) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinderL = Finder, Alloc<> >, Swift > > >; TFilterFinderR = Finder, Alloc<> >, InfixSegment>, Swift > > >; TFilterPattern = Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >; TShape = Shape, GappedShape > >; TOptions = RazerSCoreOptions >; TCounts = String >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:1314:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >& seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::operator=(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&)' first required here 110 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; typename DisableIf > >::Type = void]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_match_filter.h:251:20: required from 'bool seqan::processRead(MatchFilter&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet, Alloc<> >, Owner > >; TCallback = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:466:36: required from 'void seqan::writeBackToLocal(ThreadLocalStorage >&, String >&, bool) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinder = Finder, Alloc<> >, Swift > > >; TFilterPattern = Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >; TShape = Shape, GappedShape > >; TOptions = RazerSCoreOptions >; TCounts = String >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:769:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:110:7: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 110 | class ThreadLocalStorage< | ^~~~~~~~~~~~~~~~~~~ 111 | MapSingleReads< | ~~~~~~~~~~~~~~~ 112 | TMatches_, | ~~~~~~~~~~ 113 | TFragmentStore, | ~~~~~~~~~~~~~~~ 114 | TFilterFinder_, | ~~~~~~~~~~~~~~~ 115 | TFilterPattern_, | ~~~~~~~~~~~~~~~~ 116 | TShape, | ~~~~~~~ 117 | TOptions, | ~~~~~~~~~ 118 | TCounts, | ~~~~~~~~ 119 | TRazerSMode> > | ~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >& seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::operator=(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&)' first required here 110 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; typename DisableIf > >::Type = void]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_paired_match_filter.h:160:64: required from 'bool seqan::processRead(PairedMatchFilter&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet, Alloc<> >, Owner > >; TCallback = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:962:32: required from 'void seqan::writeBackToLocal(ThreadLocalStorage >&, String&, bool) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinderL = Finder, Alloc<> >, Pigeonhole >; TFilterFinderR = Finder, Alloc<> >, InfixSegment>, Pigeonhole >; TFilterPattern = Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >; TShape = Shape, OneGappedShape>; TOptions = RazerSCoreOptions >; TCounts = String >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:1314:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3452:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >& seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::operator=(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&)' first required here 110 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; typename DisableIf > >::Type = void]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_match_filter.h:251:20: required from 'bool seqan::processRead(MatchFilter&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet, Alloc<> >, Owner > >; TCallback = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:466:36: required from 'void seqan::writeBackToLocal(ThreadLocalStorage >&, String >&, bool) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinder = Finder, Alloc<> >, Pigeonhole >; TFilterPattern = Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >; TShape = Shape, OneGappedShape>; TOptions = RazerSCoreOptions >; TCounts = String >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:769:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3452:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:110:7: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 110 | class ThreadLocalStorage< | ^~~~~~~~~~~~~~~~~~~ 111 | MapSingleReads< | ~~~~~~~~~~~~~~~ 112 | TMatches_, | ~~~~~~~~~~ 113 | TFragmentStore, | ~~~~~~~~~~~~~~~ 114 | TFilterFinder_, | ~~~~~~~~~~~~~~~ 115 | TFilterPattern_, | ~~~~~~~~~~~~~~~~ 116 | TShape, | ~~~~~~~ 117 | TOptions, | ~~~~~~~~~ 118 | TCounts, | ~~~~~~~~ 119 | TRazerSMode> > | ~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >& seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::operator=(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&)' first required here 110 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; typename DisableIf > >::Type = void]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_paired_match_filter.h:160:64: required from 'bool seqan::processRead(PairedMatchFilter&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet, Alloc<> >, Owner > >; TCallback = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:962:32: required from 'void seqan::writeBackToLocal(ThreadLocalStorage >&, String&, bool) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinderL = Finder, Alloc<> >, Swift > > >; TFilterFinderR = Finder, Alloc<> >, InfixSegment>, Swift > > >; TFilterPattern = Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >; TShape = Shape, GappedShape > >; TOptions = RazerSCoreOptions >; TCounts = String >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:1314:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3452:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >& seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::operator=(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&)' first required here 110 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; typename DisableIf > >::Type = void]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_match_filter.h:251:20: required from 'bool seqan::processRead(MatchFilter&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet, Alloc<> >, Owner > >; TCallback = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:466:36: required from 'void seqan::writeBackToLocal(ThreadLocalStorage >&, String >&, bool) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinder = Finder, Alloc<> >, Swift > > >; TFilterPattern = Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >; TShape = Shape, GappedShape > >; TOptions = RazerSCoreOptions >; TCounts = String >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:769:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3452:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_parallel.h:110:7: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 110 | class ThreadLocalStorage< | ^~~~~~~~~~~~~~~~~~~ 111 | MapSingleReads< | ~~~~~~~~~~~~~~~ 112 | TMatches_, | ~~~~~~~~~~ 113 | TFragmentStore, | ~~~~~~~~~~~~~~~ 114 | TFilterFinder_, | ~~~~~~~~~~~~~~~ 115 | TFilterPattern_, | ~~~~~~~~~~~~~~~~ 116 | TShape, | ~~~~~~~ 117 | TOptions, | ~~~~~~~~~ 118 | TCounts, | ~~~~~~~~ 119 | TRazerSMode> > | ~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >& seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::operator=(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&)' first required here 110 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>; TValue2 = const Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:887:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Segment, Alloc<> >, InfixSegment>; TSource = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:135:20: required from 'seqan::Holder >::Holder(const THostValue&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THostValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_anchor.h:175:9: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorEditDistance]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1210:32: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1301:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1345:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = const SimpleType*; TSpec = Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:169:56: required from 'typename seqan::Source > > >::Type seqan::source(const Iter > >&) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename Source > > >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:193:24: required from 'typename seqan::GetValue > > >::Type seqan::getValue(const Iter > >&) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename GetValue > > >::Type = ModifiedAlphabet, ModExpand<'-'> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:275:20: required from 'typename seqan::GetValue > >::Type seqan::getValue(const Proxy >&) [with TIterator = Iter, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > >; typename GetValue > >::Type = ModifiedAlphabet, ModExpand<'-'> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_base.h:151:37: required from 'typename seqan::Convert >::Type seqan::convertImpl(Convert, const Proxy&) [with TTarget = char; T = Proxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > > >; TSpec = IteratorProxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > >; typename Convert >::Type = char]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_conversion.h:149:23: required from 'typename seqan::Convert::Type seqan::convert(const TSource&) [with TTarget = char; TSource = Proxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > > >; typename Convert::Type = char]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/cigar.h:241:45: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorEditDistance]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1210:32: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1301:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1345:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:586:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 586 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:624:58: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:176:44: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, const AlignConfig&, int, int, const TAlgoTag&) [with TSequenceH = Segment, Alloc<> >, InfixSegment>; TGapsSpecH = AnchorGaps > >; TSequenceV = Segment, Alloc<> >, InfixSegment>; TGapsSpecV = AnchorGaps > >; TScoreValue = int; TScoreSpec = Tag; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = Tag; TAlgoTag = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/cigar.h:471:31: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorSemiGlobalGotoh]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1215:32: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1301:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1345:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, TIntegral) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = const SimpleType*; TSpec = Tag; TIntegral = long int]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:634:69: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:176:44: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, const AlignConfig&, int, int, const TAlgoTag&) [with TSequenceH = Segment, Alloc<> >, InfixSegment>; TGapsSpecH = AnchorGaps > >; TSequenceV = Segment, Alloc<> >, InfixSegment>; TGapsSpecV = AnchorGaps > >; TScoreValue = int; TScoreSpec = Tag; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = Tag; TAlgoTag = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/cigar.h:471:31: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorSemiGlobalGotoh]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1215:32: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1301:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1345:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:577:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 577 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = const SimpleType*; TSpec = Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:650:46: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:176:44: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, const AlignConfig&, int, int, const TAlgoTag&) [with TSequenceH = Segment, Alloc<> >, InfixSegment>; TGapsSpecH = AnchorGaps > >; TSequenceV = Segment, Alloc<> >, InfixSegment>; TGapsSpecV = AnchorGaps > >; TScoreValue = int; TScoreSpec = Tag; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = Tag; TAlgoTag = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/cigar.h:471:31: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorSemiGlobalGotoh]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1215:32: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1301:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1345:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:744:24: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:176:44: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, const AlignConfig&, int, int, const TAlgoTag&) [with TSequenceH = Segment, Alloc<> >, InfixSegment>; TGapsSpecH = AnchorGaps > >; TSequenceV = Segment, Alloc<> >, InfixSegment>; TGapsSpecV = AnchorGaps > >; TScoreValue = int; TScoreSpec = Tag; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = Tag; TAlgoTag = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/cigar.h:471:31: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorSemiGlobalGotoh]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1215:32: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1301:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1345:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >*; TParam = const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >*; TParam = const ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >, Tag >; TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >; typename Value::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_paired_match_filter.h:160:64: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&)' first required here 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >*; TParam = const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >*; TParam = const ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >, Tag >; TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; typename Value::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_paired_match_filter.h:160:64: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&)' first required here 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >*; TParam = const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >*; TParam = const ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >, Tag >; TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; typename Value::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_paired_match_filter.h:160:64: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&)' first required here 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >*; TParam = const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >*; TParam = const ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >, Tag >; TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >; typename Value::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_paired_match_filter.h:160:64: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&)' first required here 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >*; TParam = const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >*; TParam = const ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >, Tag >; TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; typename Value::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_paired_match_filter.h:160:64: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&)' first required here 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >*; TParam = const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >*; TParam = const ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >, Tag >; TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; typename Value::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_paired_match_filter.h:160:64: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&)' first required here 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >*; TParam = const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >*; TParam = const ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >, Tag >; TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >; typename Value::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_paired_match_filter.h:160:64: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&)' first required here 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >*; TParam = const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >*; TParam = const ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >, Tag >; TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; typename Value::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_paired_match_filter.h:160:64: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&)' first required here 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >*; TParam = const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >*; TParam = const ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >, Tag >; TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; typename Value::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_paired_match_filter.h:160:64: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&)' first required here 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >*; TParam = const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >*; TParam = const ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >, Tag >; TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >; typename Value::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_paired_match_filter.h:160:64: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3452:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&)' first required here 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >*; TParam = const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >*; TParam = const ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >, Tag >; TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; typename Value::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_paired_match_filter.h:160:64: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3452:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&)' first required here 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >*; TParam = const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >*; TParam = const ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >, Tag >; TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; typename Value::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_paired_match_filter.h:160:64: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3452:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&)' first required here 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:169:56: required from 'typename seqan::Source > > >::Type seqan::source(const Iter > >&) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename Source > > >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:193:24: required from 'typename seqan::GetValue > > >::Type seqan::getValue(const Iter > >&) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename GetValue > > >::Type = ModifiedAlphabet, ModExpand<'-'> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:275:20: required from 'typename seqan::GetValue > >::Type seqan::getValue(const Proxy >&) [with TIterator = Iter, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > >; typename GetValue > >::Type = ModifiedAlphabet, ModExpand<'-'> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_alphabet_expansion.h:357:37: required from 'typename seqan::Convert >, seqan::Proxy >::Type seqan::convertImpl(Convert >, T>, const Proxy&) [with THost = SimpleType; char CHAR = '-'; TSpec = Tag; T = Proxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > > >; TSpec2 = IteratorProxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > >; typename Convert >, Proxy >::Type = ModifiedAlphabet, ModExpand<'-'> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_conversion.h:149:23: required from 'typename seqan::Convert::Type seqan::convert(const TSource&) [with TTarget = ModifiedAlphabet, ModExpand<'-'> >; TSource = Proxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > > >; typename Convert::Type = ModifiedAlphabet, ModExpand<'-'> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_alphabet_expansion.h:92:59: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorEditDistance]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1210:32: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1301:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1345:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:586:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 586 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:385:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:169:17: required from 'typename seqan::Source > > >::Type seqan::source(const Iter > >&) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename Source > > >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:193:24: required from 'typename seqan::GetValue > > >::Type seqan::getValue(const Iter > >&) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename GetValue > > >::Type = ModifiedAlphabet, ModExpand<'-'> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:275:20: required from 'typename seqan::GetValue > >::Type seqan::getValue(const Proxy >&) [with TIterator = Iter, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > >; typename GetValue > >::Type = ModifiedAlphabet, ModExpand<'-'> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_base.h:151:37: required from 'typename seqan::Convert >::Type seqan::convertImpl(Convert, const Proxy&) [with TTarget = char; T = Proxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > > >; TSpec = IteratorProxy, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > > >; typename Convert >::Type = char]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_conversion.h:149:23: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorEditDistance]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1210:32: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1301:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1345:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:343:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 343 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, TIntegral) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag; TIntegral = long int]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:994:55: required from 'void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:612:32: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:176:44: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorSemiGlobalGotoh]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1215:32: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1301:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1345:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:577:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 577 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:631:45: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:176:44: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorSemiGlobalGotoh]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1215:32: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1301:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1345:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:520:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:650:29: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:176:44: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorSemiGlobalGotoh]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1215:32: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1301:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1345:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 486 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_iterator.h: In instantiation of 'typename seqan::Container >::Type seqan::container(const ModifiedIterator&) [with THost = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; TSpec = ModView > >; typename Container >::Type = ModifiedString, Alloc<> >, InfixSegment>, ModView > > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_reverse.h:314:32: required from 'typename seqan::Position > >::Type seqan::position(const ModifiedIterator >&) [with THost = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, ModView > > >; typename Position > >::Type = long unsigned int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:675:73: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = ModifiedString, Alloc<> >, InfixSegment>, ModView > > >, Tag >; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = ModifiedString, Alloc<> >, InfixSegment>, ModView > > >, Tag >; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = ModifiedString, Alloc<> >, InfixSegment>, ModView > > >, Tag >; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = ModifiedString, Alloc<> >, InfixSegment>, ModView > > >, Tag >; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:176:44: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorSemiGlobalGotoh]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1215:32: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1301:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1345:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_iterator.h:288:16: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 288 | TContainer cont(container(host(me))); | ^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement >; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:586:12: required from 'seqan::Iter > seqan::operator+(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = const SimpleType*; TSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:169:56: required from 'typename seqan::Source > > >::Type seqan::source(const Iter > >&) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename Source > > >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:193:24: required from 'typename seqan::GetValue > > >::Type seqan::getValue(const Iter > >&) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps > > >; TGapAnchors = String >; typename GetValue > > >::Type = ModifiedAlphabet, ModExpand<'-'> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:275:20: required from 'typename seqan::GetValue > >::Type seqan::getValue(const Proxy >&) [with TIterator = Iter, Alloc<> >, InfixSegment>, AnchorGaps > > >, GapsIterator > > > >; typename GetValue > >::Type = ModifiedAlphabet, ModExpand<'-'> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_base.h:151:37: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorEditDistance]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1210:32: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1301:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1345:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_iterator.h: In instantiation of 'typename seqan::Container >::Type seqan::container(ModifiedIterator&) [with THost = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; TSpec = ModView > >; typename Container >::Type = ModifiedString, Alloc<> >, InfixSegment>, ModView > > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_iterator.h:278:30: required from 'typename seqan::Container >::Type seqan::container(ModifiedIterator&) [with THost = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, ModView > > >; TSpec = Tag; typename Container >::Type = ModifiedString, Alloc<> >, InfixSegment>, ModView > > >, Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:397:81: required from 'void seqan::_computeTrack(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSeqHValue&, const TSeqVValue&, const TSeqVIterator&, const TSeqVIterator&, const TScoringScheme&, TDPCell&, TDPCell&, const TColumnDescriptor&, const TDPProfile&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSeqHValue = SimpleType; TSeqVValue = SimpleType; TSeqVIterator = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, ModView > > >, Tag >; TScoringScheme = Score >; TDPCell = DPCell_ >; TColumnDescriptor = MetaColumnDescriptor, Tag >; TDPProfile = DPProfile_ >, Tag, TracebackOn, Tag > >, Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:891:38: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = ModifiedString, Alloc<> >, InfixSegment>, ModView > > >, Tag >; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = ModifiedString, Alloc<> >, InfixSegment>, ModView > > >, Tag >; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = ModifiedString, Alloc<> >, InfixSegment>, ModView > > >, Tag >; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorSemiGlobalGotoh]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1215:32: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1301:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1345:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_iterator.h:278:16: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 278 | TContainer cont(container(host(me))); | ^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement >; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >*; TParam = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >*; TParam = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:511:23: required from 'void seqan::_arrayConstructMoveDefault(TSource1, TSource2, TTarget) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >*; TSource1 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >*; TSource2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >*]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:1055:31: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, False) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:1064:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1683:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&&)' first required here 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, const TSource&) [with TTarget = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSource = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; typename DisableIf > >::Type = void]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:889:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSource = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:924:24: required from 'void seqan::assign(Holder >&, const Holder >&) [with TValue = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:150:15: required from 'const seqan::Holder >& seqan::Holder >::operator=(const seqan::Holder >&) [with TValue = seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:519:11: required from 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >; typename DisableIf > >::Type = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:118:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 118 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::UngappedShape<0> >]' 143 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >*; TParam = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >*; TParam = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:511:23: required from 'void seqan::_arrayConstructMoveDefault(TSource1, TSource2, TTarget) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >*; TSource1 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >*; TSource2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >*]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:1055:31: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, False) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:1064:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1683:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&&)' first required here 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, const TSource&) [with TTarget = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSource = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; typename DisableIf > >::Type = void]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:889:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSource = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:924:24: required from 'void seqan::assign(Holder >&, const Holder >&) [with TValue = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:150:15: required from 'const seqan::Holder >& seqan::Holder >::operator=(const seqan::Holder >&) [with TValue = seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h:318:11: required from 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; typename DisableIf > >::Type = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:118:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 118 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>]' 143 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, const TSource&) [with TTarget = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSource = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; typename DisableIf > >::Type = void]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:889:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSource = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:924:24: required from 'void seqan::assign(Holder >&, const Holder >&) [with TValue = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:150:15: required from 'const seqan::Holder >& seqan::Holder >::operator=(const seqan::Holder >&) [with TValue = seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:519:11: required from 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >; typename DisableIf > >::Type = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:118:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 118 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::UngappedShape<0> >]' 143 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, const TSource&) [with TTarget = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSource = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; typename DisableIf > >::Type = void]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:889:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSource = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:924:24: required from 'void seqan::assign(Holder >&, const Holder >&) [with TValue = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:150:15: required from 'const seqan::Holder >& seqan::Holder >::operator=(const seqan::Holder >&) [with TValue = seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h:318:11: required from 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; typename DisableIf > >::Type = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:118:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 118 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>]' 143 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >*; TParam = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >*; TParam = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:511:23: required from 'void seqan::_arrayConstructMoveDefault(TSource1, TSource2, TTarget) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >*; TSource1 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >*; TSource2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >*]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:1055:31: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, False) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:1064:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1683:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&&)' first required here 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, const TSource&) [with TTarget = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSource = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; typename DisableIf > >::Type = void]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:889:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSource = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:924:24: required from 'void seqan::assign(Holder >&, const Holder >&) [with TValue = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:150:15: required from 'const seqan::Holder >& seqan::Holder >::operator=(const seqan::Holder >&) [with TValue = seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:519:11: required from 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; typename DisableIf > >::Type = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:118:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 118 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::GappedShape > >]' 143 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, const TSource&) [with TTarget = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSource = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; typename DisableIf > >::Type = void]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:889:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSource = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:924:24: required from 'void seqan::assign(Holder >&, const Holder >&) [with TValue = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:150:15: required from 'const seqan::Holder >& seqan::Holder >::operator=(const seqan::Holder >&) [with TValue = seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:519:11: required from 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; typename DisableIf > >::Type = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:118:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 118 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::GappedShape > >]' 143 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >*; TParam = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >*; TParam = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:511:23: required from 'void seqan::_arrayConstructMoveDefault(TSource1, TSource2, TTarget) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >*; TSource1 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >*; TSource2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >*]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:1055:31: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, False) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:1064:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1683:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&&)' first required here 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >*; TParam = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >*; TParam = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:511:23: required from 'void seqan::_arrayConstructMoveDefault(TSource1, TSource2, TTarget) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >*; TSource1 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >*; TSource2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >*]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:1055:31: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, False) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:1064:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1683:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&&)' first required here 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >*; TParam = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >*; TParam = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:511:23: required from 'void seqan::_arrayConstructMoveDefault(TSource1, TSource2, TTarget) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >*; TSource1 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >*; TSource2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >*]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:1055:31: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, False) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:1064:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1683:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&&)' first required here 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >*; TParam = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >*; TParam = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:511:23: required from 'void seqan::_arrayConstructMoveDefault(TSource1, TSource2, TTarget) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >*; TSource1 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >*; TSource2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >*]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:1055:31: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, False) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:1064:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1683:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&&)' first required here 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >*; TParam = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >*; TParam = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:511:23: required from 'void seqan::_arrayConstructMoveDefault(TSource1, TSource2, TTarget) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >*; TSource1 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >*; TSource2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >*]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:1055:31: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, False) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:1064:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1683:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&&)' first required here 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >*; TParam = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >*; TParam = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:511:23: required from 'void seqan::_arrayConstructMoveDefault(TSource1, TSource2, TTarget) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >*; TSource1 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >*; TSource2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >*]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:1055:31: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, False) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:1064:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1683:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&&)' first required here 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >*; TParam = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >*; TParam = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:511:23: required from 'void seqan::_arrayConstructMoveDefault(TSource1, TSource2, TTarget) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >*; TSource1 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >*; TSource2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >*]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:1055:31: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, False) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:1064:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1683:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSCoreOptions >, String >, RazerSMode > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3452:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&&)' first required here 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >*; TParam = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >*; TParam = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:511:23: required from 'void seqan::_arrayConstructMoveDefault(TSource1, TSource2, TTarget) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >*; TSource1 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >*; TSource2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >*]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:1055:31: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, False) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:1064:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1683:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Pigeonhole >, Finder, Alloc<> >, InfixSegment>, Pigeonhole >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSCoreOptions >, String >, RazerSMode > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3452:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&&)' first required here 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >*; TParam = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >*; TParam = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:511:23: required from 'void seqan::_arrayConstructMoveDefault(TSource1, TSource2, TTarget) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >*; TSource1 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >*; TSource2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >*]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:1055:31: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, False) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:1064:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1683:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder, Alloc<> >, Swift > > >, Finder, Alloc<> >, InfixSegment>, Swift > > >, Pattern, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSCoreOptions >, String >, RazerSMode > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&, RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:3452:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSCoreOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:235:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:26: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&&)' first required here 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119: In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned int', inlined from 'seqan::parseGappedParams >, seqan::RazerSSpec >(seqan::RazerSOptions >&, std::basic_fstream >&, seqan::ParamChooserOptions&)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/paramChooser.h:993:51, inlined from 'seqan::chooseParams >(seqan::RazerSOptions >&, seqan::ParamChooserOptions&)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/paramChooser.h:1286:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::chooseParams >(seqan::RazerSOptions >&, seqan::ParamChooserOptions&)bool': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned int', inlined from 'seqan::parseGappedParams >, seqan::RazerSSpec >(seqan::RazerSOptions >&, std::basic_fstream >&, seqan::ParamChooserOptions&)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/paramChooser.h:1011:66, inlined from 'seqan::chooseParams >(seqan::RazerSOptions >&, seqan::ParamChooserOptions&)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/paramChooser.h:1286:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::chooseParams >(seqan::RazerSOptions >&, seqan::ParamChooserOptions&)bool': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned int', inlined from 'seqan::parseGappedParams >, seqan::RazerSSpec >(seqan::RazerSOptions >&, std::basic_fstream >&, seqan::ParamChooserOptions&)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/paramChooser.h:1021:53, inlined from 'seqan::chooseParams >(seqan::RazerSOptions >&, seqan::ParamChooserOptions&)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/paramChooser.h:1286:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::chooseParams >(seqan::RazerSOptions >&, seqan::ParamChooserOptions&)bool': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ [ 73%] Building CXX object apps/razers3/CMakeFiles/razers3.dir/param_tabs.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/razers3 && /usr/bin/g++ -DSEQAN_APP_VERSION=\"3.5.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/razers3/CMakeFiles/razers3.dir/param_tabs.cpp.o -MF CMakeFiles/razers3.dir/param_tabs.cpp.o.d -o CMakeFiles/razers3.dir/param_tabs.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/param_tabs.cpp [ 73%] Linking CXX executable ../../bin/razers3 cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/razers3 && /usr/bin/cmake -E cmake_link_script CMakeFiles/razers3.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/razers3.dir/razers.cpp.o CMakeFiles/razers3.dir/param_tabs.cpp.o -o ../../bin/razers3 -lrt -lz -lbz2 make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 73%] Built target razers3 make -f apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build.make apps/razers3/CMakeFiles/razers3_simulate_reads.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/razers3 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build.make apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 75%] Building CXX object apps/razers3/CMakeFiles/razers3_simulate_reads.dir/simulate_reads.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/razers3 && /usr/bin/g++ -DSEQAN_APP_VERSION=\"3.5.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/razers3/CMakeFiles/razers3_simulate_reads.dir/simulate_reads.cpp.o -MF CMakeFiles/razers3_simulate_reads.dir/simulate_reads.cpp.o.d -o CMakeFiles/razers3_simulate_reads.dir/simulate_reads.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/simulate_reads.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse.h:46, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/simulate_reads.cpp:6: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/fstream:40, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/simulate_reads.cpp:1: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/simulate_reads.cpp:7: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:41: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:58: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io.h:996:18: required from 'bool seqan::loadContigs(FragmentStore&, const StringSet > >&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io.h:1035:23: required from 'bool seqan::loadContigs(FragmentStore&, const CharString&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io.h:1043:23: required from 'bool seqan::loadContigs(FragmentStore&, const TFileNames&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TFileNames = char*]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/simulate_reads.cpp:120:21: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io.h:996:18: required from 'bool seqan::loadContigs(FragmentStore&, const StringSet > >&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io.h:1035:23: required from 'bool seqan::loadContigs(FragmentStore&, const CharString&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io.h:1043:23: required from 'bool seqan::loadContigs(FragmentStore&, const TFileNames&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TFileNames = char*]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/simulate_reads.cpp:120:21: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io.h:996:18: required from 'bool seqan::loadContigs(FragmentStore&, const StringSet > >&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io.h:1035:23: required from 'bool seqan::loadContigs(FragmentStore&, const CharString&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io.h:1043:23: required from 'bool seqan::loadContigs(FragmentStore&, const TFileNames&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TFileNames = char*]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/simulate_reads.cpp:120:21: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io.h:996:18: required from 'bool seqan::loadContigs(FragmentStore&, const StringSet > >&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io.h:1035:23: required from 'bool seqan::loadContigs(FragmentStore&, const CharString&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io.h:1043:23: required from 'bool seqan::loadContigs(FragmentStore&, const TFileNames&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TFileNames = char*]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/simulate_reads.cpp:120:21: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io.h:996:18: required from 'bool seqan::loadContigs(FragmentStore&, const StringSet > >&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io.h:1035:23: required from 'bool seqan::loadContigs(FragmentStore&, const CharString&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io.h:1043:23: required from 'bool seqan::loadContigs(FragmentStore&, const TFileNames&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TFileNames = char*]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/simulate_reads.cpp:120:21: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ [ 75%] Linking CXX executable ../../bin/razers3_simulate_reads cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/razers3 && /usr/bin/cmake -E cmake_link_script CMakeFiles/razers3_simulate_reads.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/razers3_simulate_reads.dir/simulate_reads.cpp.o -o ../../bin/razers3_simulate_reads -lrt -lz -lbz2 In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from '_toHtml' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/tool_doc.h:285:34: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551568' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function '_toHtml': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from '_toText' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function '_toText': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 75%] Built target razers3_simulate_reads make -f apps/razers3/CMakeFiles/razers3_quality2prob.dir/build.make apps/razers3/CMakeFiles/razers3_quality2prob.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/razers3 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/razers3/CMakeFiles/razers3_quality2prob.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/razers3/CMakeFiles/razers3_quality2prob.dir/build.make apps/razers3/CMakeFiles/razers3_quality2prob.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 76%] Building CXX object apps/razers3/CMakeFiles/razers3_quality2prob.dir/quality2prob.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/razers3 && /usr/bin/g++ -DSEQAN_APP_VERSION=\"3.5.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/razers3/CMakeFiles/razers3_quality2prob.dir/quality2prob.cpp.o -MF CMakeFiles/razers3_quality2prob.dir/quality2prob.cpp.o.d -o CMakeFiles/razers3_quality2prob.dir/quality2prob.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/quality2prob.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse.h:46, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/quality2prob.cpp:5: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/fstream:40, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/quality2prob.cpp:1: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/quality2prob.cpp:6: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:41: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:42, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:34, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/quality2prob.cpp:7: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:47: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:76: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:91: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:102: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:107: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:110: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:111: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:114: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:121: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:125: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:131: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:188: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:845:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 845 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:862:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 862 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:896:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 896 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:934:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 934 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:968:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 968 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:1009:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1009 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:1046:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1046 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:1087:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1087 | public std::binary_function::Type, typename Value::Type, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:1130:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1130 | public std::binary_function::Type, typename Value::Type, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:1174:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1174 | public std::binary_function::Type, typename Value::Type, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/razers.h:1218:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1218 | public std::binary_function::Type, typename Value::Type, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:58: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/quality2prob.cpp:42:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/quality2prob.cpp:42:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/quality2prob.cpp:42:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/quality2prob.cpp:42:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3/quality2prob.cpp:42:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ [ 76%] Linking CXX executable ../../bin/razers3_quality2prob cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/razers3 && /usr/bin/cmake -E cmake_link_script CMakeFiles/razers3_quality2prob.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/razers3_quality2prob.dir/quality2prob.cpp.o -o ../../bin/razers3_quality2prob -lrt -lz -lbz2 In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from '_toText' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function '_toText': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from '_toHtml' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/tool_doc.h:285:34: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551568' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function '_toHtml': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 76%] Built target razers3_quality2prob make -f apps/rep_sep/CMakeFiles/rep_sep.dir/build.make apps/rep_sep/CMakeFiles/rep_sep.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rep_sep /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rep_sep /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rep_sep/CMakeFiles/rep_sep.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/rep_sep/CMakeFiles/rep_sep.dir/build.make apps/rep_sep/CMakeFiles/rep_sep.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 78%] Building CXX object apps/rep_sep/CMakeFiles/rep_sep.dir/rep_sep.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rep_sep && /usr/bin/g++ -DSEQAN_APP_VERSION=\"0.1.11\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/rep_sep/CMakeFiles/rep_sep.dir/rep_sep.cpp.o -MF CMakeFiles/rep_sep.dir/rep_sep.cpp.o.d -o CMakeFiles/rep_sep.dir/rep_sep.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rep_sep/rep_sep.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse.h:46, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rep_sep/rep_sep.cpp:27: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rep_sep/rep_sep.cpp:22: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rep_sep/rep_sep.cpp:29: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:41: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_fundamental.h:72, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:58, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse.h:44: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, const TSource&) [with TTarget = GraphCargo, AlignedReadStoreElement, void>, long unsigned int>; TSource = GraphCargo, AlignedReadStoreElement, void>, long unsigned int>; typename DisableIf > >::Type = void]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:702:11: required from 'void seqan::assignValue(T&, TPos, const TValue&) [with T = String, AlignedReadStoreElement, void>, long unsigned int>, Alloc<> >; TValue = GraphCargo, AlignedReadStoreElement, void>, long unsigned int>; TPos = unsigned int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/property_map_generic.h:186:16: required from 'typename seqan::EnableIf >, void>::Type seqan::assignProperty(TPropertyMap&, TDescriptor, TValue) [with TPropertyMap = String, AlignedReadStoreElement, void>, long unsigned int>, Alloc<> >; TDescriptor = unsigned int; TValue = GraphCargo, AlignedReadStoreElement, void>, long unsigned int>; typename EnableIf >, void>::Type = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rep_sep/rgraph_base.h:191:23: required from 'GraphCargo& registerRead(ReadGraph&, typename ReadGraph::TId) [with TColumnAlphabet = seqan::Triple; TAlignedReadStoreElement = seqan::AlignedReadStoreElement, void>; TPosition = long unsigned int; typename ReadGraph::TId = unsigned int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rep_sep/rgraph_construction.h:82:59: required from 'void construct(ReadGraph&, const seqan::String > >&, const seqan::FragmentStore&, TId) [with TColumnAlphabet = seqan::Triple; TAlignedReadStoreElement = seqan::AlignedReadStoreElement, void>; TPosition = long unsigned int; TSpec = void; TConfig = seqan::FragmentStoreConfig; TId = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rep_sep/rep_sep.cpp:217:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:118:12: warning: implicitly-declared 'GraphCargo, seqan::AlignedReadStoreElement, void>, long unsigned int>& GraphCargo, seqan::AlignedReadStoreElement, void>, long unsigned int>::operator=(const GraphCargo, seqan::AlignedReadStoreElement, void>, long unsigned int>&)' is deprecated [-Wdeprecated-copy] 118 | target = source; | ~~~~~~~^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rep_sep/rgraph.h:32, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rep_sep/rep_sep.cpp:34: /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rep_sep/rgraph_base.h:44:5: note: because 'GraphCargo, seqan::AlignedReadStoreElement, void>, long unsigned int>' has user-provided 'GraphCargo::GraphCargo(const GraphCargo&) [with TColumnAlphabet = seqan::Triple; TAlignedReadStoreElement = seqan::AlignedReadStoreElement, void>; TPosition = long unsigned int]' 44 | GraphCargo(GraphCargo const& other) | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::lexicalCast >, seqan::PrefixSegment> >(seqan::Segment >, seqan::PrefixSegment> const&)unsigned int': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast >, seqan::PrefixSegment> >(unsigned int const&, seqan::Segment >, seqan::PrefixSegment> const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::lexicalCast >, seqan::SuffixSegment> >(seqan::Segment >, seqan::SuffixSegment> const&)unsigned int': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast >, seqan::SuffixSegment> >(unsigned int const&, seqan::Segment >, seqan::SuffixSegment> const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::lexicalCast >, seqan::PrefixSegment> >(seqan::Segment >, seqan::PrefixSegment> const&)long': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const long int &' to 'seqan::BadLexicalCast::BadLexicalCast >, seqan::PrefixSegment> >(long const&, seqan::Segment >, seqan::PrefixSegment> const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::lexicalCast >, seqan::SuffixSegment> >(seqan::Segment >, seqan::SuffixSegment> const&)long': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const long int &' to 'seqan::BadLexicalCast::BadLexicalCast >, seqan::SuffixSegment> >(long const&, seqan::Segment >, seqan::SuffixSegment> const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::lexicalCast > >(seqan::String > const&)long': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const long int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(long const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned int': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ [ 78%] Linking CXX executable ../../bin/rep_sep cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rep_sep && /usr/bin/cmake -E cmake_link_script CMakeFiles/rep_sep.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/rep_sep.dir/rep_sep.cpp.o -o ../../bin/rep_sep -lrt In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from '_toText' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function '_toText': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'obtainId' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_idmanager.h:166:15: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function 'obtainId': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 78%] Built target rep_sep make -f apps/sak/CMakeFiles/sak.dir/build.make apps/sak/CMakeFiles/sak.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sak /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/sak /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/sak/CMakeFiles/sak.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/sak/CMakeFiles/sak.dir/build.make apps/sak/CMakeFiles/sak.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 78%] Building CXX object apps/sak/CMakeFiles/sak.dir/sak.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/sak && /usr/bin/g++ -DSEQAN_APP_VERSION=\"0.4.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/sak/CMakeFiles/sak.dir/sak.cpp.o -MF CMakeFiles/sak.dir/sak.cpp.o.d -o CMakeFiles/sak.dir/sak.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sak/sak.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse.h:46, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sak/sak.cpp:42: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sak/sak.cpp:40: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sak/sak.cpp:46: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:50, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/bam_sam.h:39, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:55: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sak/sak.cpp:337:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:58: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sak/sak.cpp:337:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sak/sak.cpp:337:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sak/sak.cpp:337:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sak/sak.cpp:347:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sak/sak.cpp:337:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sak/sak.cpp:347:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:94: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/tokenization.h:489:23: required from 'void seqan::writeWrappedString(TTarget&, const TSequence&, TSize) [with TTarget = Iter, std::char_traits >, StreamIterator > >; TSequence = Segment, Alloc<> >, InfixSegment>; TSize = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:468:23: required from 'typename seqan::EnableIf, seqan::Tag > > >, void>::Type seqan::writeRecord(TTarget&, const TIdString&, const TSeqString&, const TQualString&, const Fastq&, const SequenceOutputOptions&) [with TTarget = Iter, std::char_traits >, StreamIterator > >; TIdString = String >; TSeqString = Segment, Alloc<> >, InfixSegment>; TQualString = Segment >, InfixSegment>; typename EnableIf, Tag > > >, void>::Type = void; Fastq = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/sequence_file.h:423:16: required from 'void seqan::writeRecord(FormattedFile, Tag, TSpec>&, const TIdString&, const TSeqString&, const TQualString&, const Tag&) [with TSpec = void; TIdString = String >; TSeqString = Segment, Alloc<> >, InfixSegment>; TQualString = Segment >, InfixSegment>; TagSpec = TagFastq_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/sequence_file.h:506:20: required from 'void seqan::writeRecord(FormattedFile, Tag, TSpec>&, const TIdString&, const TSeqString&, const TQualString&, const TagSelector&) [with TSpec = void; TIdString = String >; TSeqString = Segment, Alloc<> >, InfixSegment>; TQualString = Segment >, InfixSegment>; TTagList = TagList, TagList, TagList, TagList > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/sequence_file.h:519:16: required from 'typename seqan::EnableIf >, seqan::IsSequence >, void>::Type seqan::writeRecord(TFile&, const TIdString&, const TSeqString&, const TQualString&) [with TFile = FormattedFile, Tag >; TIdString = String >; TSeqString = Segment, Alloc<> >, InfixSegment>; TQualString = Segment >, InfixSegment>; typename EnableIf >, IsSequence >, void>::Type = void; typename TFile::TStream = VirtualStream, std::char_traits >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sak/sak.cpp:424:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:96: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_iterator.h:80, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:86, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse.h:44: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/tokenization.h:489:23: required from 'void seqan::writeWrappedString(TTarget&, const TSequence&, TSize) [with TTarget = Iter, std::char_traits >, StreamIterator > >; TSequence = Segment >, InfixSegment>; TSize = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:475:23: required from 'typename seqan::EnableIf, seqan::Tag > > >, void>::Type seqan::writeRecord(TTarget&, const TIdString&, const TSeqString&, const TQualString&, const Fastq&, const SequenceOutputOptions&) [with TTarget = Iter, std::char_traits >, StreamIterator > >; TIdString = String >; TSeqString = Segment, Alloc<> >, InfixSegment>; TQualString = Segment >, InfixSegment>; typename EnableIf, Tag > > >, void>::Type = void; Fastq = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/sequence_file.h:423:16: required from 'void seqan::writeRecord(FormattedFile, Tag, TSpec>&, const TIdString&, const TSeqString&, const TQualString&, const Tag&) [with TSpec = void; TIdString = String >; TSeqString = Segment, Alloc<> >, InfixSegment>; TQualString = Segment >, InfixSegment>; TagSpec = TagFastq_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/sequence_file.h:506:20: required from 'void seqan::writeRecord(FormattedFile, Tag, TSpec>&, const TIdString&, const TSeqString&, const TQualString&, const TagSelector&) [with TSpec = void; TIdString = String >; TSeqString = Segment, Alloc<> >, InfixSegment>; TQualString = Segment >, InfixSegment>; TTagList = TagList, TagList, TagList, TagList > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/sequence_file.h:519:16: required from 'typename seqan::EnableIf >, seqan::IsSequence >, void>::Type seqan::writeRecord(TFile&, const TIdString&, const TSeqString&, const TQualString&) [with TFile = FormattedFile, Tag >; TIdString = String >; TSeqString = Segment, Alloc<> >, InfixSegment>; TQualString = Segment >, InfixSegment>; typename EnableIf >, IsSequence >, void>::Type = void; typename TFile::TStream = VirtualStream, std::char_traits >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sak/sak.cpp:424:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/tokenization.h:489:23: required from 'void seqan::writeWrappedString(TTarget&, const TSequence&, TSize) [with TTarget = Iter, std::char_traits >, StreamIterator > >; TSequence = Segment, Alloc<> >, InfixSegment>; TSize = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:468:23: required from 'typename seqan::EnableIf, seqan::Tag > > >, void>::Type seqan::writeRecord(TTarget&, const TIdString&, const TSeqString&, const TQualString&, const Fastq&, const SequenceOutputOptions&) [with TTarget = Iter, std::char_traits >, StreamIterator > >; TIdString = String >; TSeqString = Segment, Alloc<> >, InfixSegment>; TQualString = Segment >, InfixSegment>; typename EnableIf, Tag > > >, void>::Type = void; Fastq = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/sequence_file.h:423:16: required from 'void seqan::writeRecord(FormattedFile, Tag, TSpec>&, const TIdString&, const TSeqString&, const TQualString&, const Tag&) [with TSpec = void; TIdString = String >; TSeqString = Segment, Alloc<> >, InfixSegment>; TQualString = Segment >, InfixSegment>; TagSpec = TagFastq_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/sequence_file.h:506:20: required from 'void seqan::writeRecord(FormattedFile, Tag, TSpec>&, const TIdString&, const TSeqString&, const TQualString&, const TagSelector&) [with TSpec = void; TIdString = String >; TSeqString = Segment, Alloc<> >, InfixSegment>; TQualString = Segment >, InfixSegment>; TTagList = TagList, TagList, TagList, TagList > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/sequence_file.h:519:16: required from 'typename seqan::EnableIf >, seqan::IsSequence >, void>::Type seqan::writeRecord(TFile&, const TIdString&, const TSeqString&, const TQualString&) [with TFile = FormattedFile, Tag >; TIdString = String >; TSeqString = Segment, Alloc<> >, InfixSegment>; TQualString = Segment >, InfixSegment>; typename EnableIf >, IsSequence >, void>::Type = void; typename TFile::TStream = VirtualStream, std::char_traits >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sak/sak.cpp:424:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/tokenization.h:489:23: required from 'void seqan::writeWrappedString(TTarget&, const TSequence&, TSize) [with TTarget = Iter, std::char_traits >, StreamIterator > >; TSequence = Segment >, InfixSegment>; TSize = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:475:23: required from 'typename seqan::EnableIf, seqan::Tag > > >, void>::Type seqan::writeRecord(TTarget&, const TIdString&, const TSeqString&, const TQualString&, const Fastq&, const SequenceOutputOptions&) [with TTarget = Iter, std::char_traits >, StreamIterator > >; TIdString = String >; TSeqString = Segment, Alloc<> >, InfixSegment>; TQualString = Segment >, InfixSegment>; typename EnableIf, Tag > > >, void>::Type = void; Fastq = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/sequence_file.h:423:16: required from 'void seqan::writeRecord(FormattedFile, Tag, TSpec>&, const TIdString&, const TSeqString&, const TQualString&, const Tag&) [with TSpec = void; TIdString = String >; TSeqString = Segment, Alloc<> >, InfixSegment>; TQualString = Segment >, InfixSegment>; TagSpec = TagFastq_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/sequence_file.h:506:20: required from 'void seqan::writeRecord(FormattedFile, Tag, TSpec>&, const TIdString&, const TSeqString&, const TQualString&, const TagSelector&) [with TSpec = void; TIdString = String >; TSeqString = Segment, Alloc<> >, InfixSegment>; TQualString = Segment >, InfixSegment>; TTagList = TagList, TagList, TagList, TagList > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/sequence_file.h:519:16: required from 'typename seqan::EnableIf >, seqan::IsSequence >, void>::Type seqan::writeRecord(TFile&, const TIdString&, const TSeqString&, const TQualString&) [with TFile = FormattedFile, Tag >; TIdString = String >; TSeqString = Segment, Alloc<> >, InfixSegment>; TQualString = Segment >, InfixSegment>; typename EnableIf >, IsSequence >, void>::Type = void; typename TFile::TStream = VirtualStream, std::char_traits >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sak/sak.cpp:424:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ [ 79%] Linking CXX executable ../../bin/sak cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/sak && /usr/bin/cmake -E cmake_link_script CMakeFiles/sak.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/sak.dir/sak.cpp.o -o ../../bin/sak -lrt In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from '_toText' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function '_toText': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from '_toHtml' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/tool_doc.h:285:34: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551568' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function '_toHtml': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 79%] Built target sak make -f apps/sam2matrix/CMakeFiles/sam2matrix.dir/build.make apps/sam2matrix/CMakeFiles/sam2matrix.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sam2matrix /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/sam2matrix /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/sam2matrix/CMakeFiles/sam2matrix.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/sam2matrix/CMakeFiles/sam2matrix.dir/build.make apps/sam2matrix/CMakeFiles/sam2matrix.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 79%] Building CXX object apps/sam2matrix/CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/sam2matrix && /usr/bin/g++ -DSEQAN_APP_VERSION=\"0.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/sam2matrix/CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o -MF CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o.d -o CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sam2matrix/sam2matrix.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:47, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sam2matrix/sam2matrix.cpp:43: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_tree.h:65, from /usr/include/c++/13/map:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sam2matrix/sam2matrix.cpp:37: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:50: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sam2matrix/sam2matrix.cpp:46: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:49: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sam2matrix/sam2matrix.cpp:173:59: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sam2matrix/sam2matrix.cpp:42: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sam2matrix/sam2matrix.cpp:145:60: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sam2matrix/sam2matrix.cpp:145:60: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sam2matrix/sam2matrix.cpp:173:59: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sam2matrix/sam2matrix.cpp:145:60: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sam2matrix/sam2matrix.cpp:145:60: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = True]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sam2matrix/sam2matrix.cpp:145:60: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned short': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned short const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned int': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)int', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int &' to 'seqan::BadLexicalCast::BadLexicalCast(int const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)unsigned int', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast(unsigned int const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)short', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, char*>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int &' to 'seqan::BadLexicalCast::BadLexicalCast(short const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)unsigned short', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, char*>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast(unsigned short const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, char*>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char &' to 'seqan::BadLexicalCast::BadLexicalCast(char const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)unsigned char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, unsigned char, seqan::TagList >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, char*>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char &' to 'seqan::BadLexicalCast::BadLexicalCast(unsigned char const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)signed char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(signed char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(signed char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, signed char>(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'seqan::tagApply >, char*>, unsigned char, seqan::TagList >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char &' to 'seqan::BadLexicalCast::BadLexicalCast(signed char const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)int', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, seqan::String >&>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)short', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, seqan::String >&>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, seqan::String >&>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(short const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, seqan::String >&>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char &' to 'seqan::BadLexicalCast::BadLexicalCast > >(char const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(unsigned char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(unsigned char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned char, seqan::TagList >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, seqan::String >&>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned char const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)signed char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(signed char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(signed char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, seqan::String >&>, signed char>(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned char, seqan::TagList >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char &' to 'seqan::BadLexicalCast::BadLexicalCast > >(signed char const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned short', inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:277:40, inlined from 'seqan::readRecord(seqan::BamAlignmentRecord&, seqan::FormattedFile, seqan::Tag, void>&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:241:15, inlined from '_parseSamFiles(seqan::StringSet >, seqan::Owner > >&, std::map >, unsigned int, std::less > >, std::allocator > const, unsigned int> > >&, SamToGasicOptions const&)' at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sam2matrix/sam2matrix.cpp:181:23: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function '_parseSamFiles(seqan::StringSet >, seqan::Owner > >&, std::map >, unsigned int, std::less > >, std::allocator > const, unsigned int> > >&, SamToGasicOptions const&)': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned short const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned short', inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:306:44, inlined from 'seqan::readRecord(seqan::BamAlignmentRecord&, seqan::FormattedFile, seqan::Tag, void>&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:241:15, inlined from '_parseSamFiles(seqan::StringSet >, seqan::Owner > >&, std::map >, unsigned int, std::less > >, std::allocator > const, unsigned int> > >&, SamToGasicOptions const&)' at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sam2matrix/sam2matrix.cpp:181:23: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function '_parseSamFiles(seqan::StringSet >, seqan::Owner > >&, std::map >, unsigned int, std::less > >, std::allocator > const, unsigned int> > >&, SamToGasicOptions const&)': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned short const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned int', inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:320:50, inlined from 'seqan::readRecord(seqan::BamAlignmentRecord&, seqan::FormattedFile, seqan::Tag, void>&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:241:15, inlined from '_parseSamFiles(seqan::StringSet >, seqan::Owner > >&, std::map >, unsigned int, std::less > >, std::allocator > const, unsigned int> > >&, SamToGasicOptions const&)' at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sam2matrix/sam2matrix.cpp:181:23: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function '_parseSamFiles(seqan::StringSet >, seqan::Owner > >&, std::map >, unsigned int, std::less > >, std::allocator > const, unsigned int> > >&, SamToGasicOptions const&)': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)int', inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:363:43, inlined from 'seqan::readRecord(seqan::BamAlignmentRecord&, seqan::FormattedFile, seqan::Tag, void>&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:241:15, inlined from '_parseSamFiles(seqan::StringSet >, seqan::Owner > >&, std::map >, unsigned int, std::less > >, std::allocator > const, unsigned int> > >&, SamToGasicOptions const&)' at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sam2matrix/sam2matrix.cpp:181:23: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function '_parseSamFiles(seqan::StringSet >, seqan::Owner > >&, std::map >, unsigned int, std::less > >, std::allocator > const, unsigned int> > >&, SamToGasicOptions const&)': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ [ 81%] Linking CXX executable ../../bin/sam2matrix cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/sam2matrix && /usr/bin/cmake -E cmake_link_script CMakeFiles/sam2matrix.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o -o ../../bin/sam2matrix -lrt In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from '_toText' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function '_toText': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 81%] Built target sam2matrix make -f apps/samcat/CMakeFiles/samcat.dir/build.make apps/samcat/CMakeFiles/samcat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/samcat /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/samcat /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/samcat/CMakeFiles/samcat.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/samcat/CMakeFiles/samcat.dir/build.make apps/samcat/CMakeFiles/samcat.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 81%] Building CXX object apps/samcat/CMakeFiles/samcat.dir/samcat.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/samcat && /usr/bin/g++ -DSEQAN_APP_VERSION=\"0.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/samcat/CMakeFiles/samcat.dir/samcat.cpp.o -MF CMakeFiles/samcat.dir/samcat.cpp.o.d -o CMakeFiles/samcat.dir/samcat.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/samcat/samcat.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:47, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/samcat/samcat.cpp:37: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/debug_test_system.h:150, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/samcat/samcat.cpp:35: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:50: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:49: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/samcat/samcat.cpp:36: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned short': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned short const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned int': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::lexicalCast > >(seqan::String > const&)int': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)int', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int &' to 'seqan::BadLexicalCast::BadLexicalCast(int const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)unsigned int', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast(unsigned int const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)short', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, char*>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int &' to 'seqan::BadLexicalCast::BadLexicalCast(short const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)unsigned short', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, char*>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast(unsigned short const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, char*>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char &' to 'seqan::BadLexicalCast::BadLexicalCast(char const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)unsigned char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, unsigned char, seqan::TagList >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, char*>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char &' to 'seqan::BadLexicalCast::BadLexicalCast(unsigned char const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)signed char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(signed char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(signed char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, signed char>(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'seqan::tagApply >, char*>, unsigned char, seqan::TagList >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char &' to 'seqan::BadLexicalCast::BadLexicalCast(signed char const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)short', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, seqan::String >&>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, seqan::String >&>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(short const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, seqan::String >&>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char &' to 'seqan::BadLexicalCast::BadLexicalCast > >(char const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(unsigned char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(unsigned char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned char, seqan::TagList >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, seqan::String >&>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned char const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)signed char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(signed char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(signed char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, seqan::String >&>, signed char>(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned char, seqan::TagList >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char &' to 'seqan::BadLexicalCast::BadLexicalCast > >(signed char const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned int', inlined from 'seqan::readRecord >, seqan::AdaptorIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter >, seqan::AdaptorIterator > >&, seqan::Tag const&)void [clone .isra.0]' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:320:50: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::readRecord >, seqan::AdaptorIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter >, seqan::AdaptorIterator > >&, seqan::Tag const&)void [clone .isra.0]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned int', inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void [clone .isra.0]' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:320:50: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void [clone .isra.0]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ [ 81%] Linking CXX executable ../../bin/samcat cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/samcat && /usr/bin/cmake -E cmake_link_script CMakeFiles/samcat.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/samcat.dir/samcat.cpp.o -o ../../bin/samcat -lrt -lz In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from '_toText' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function '_toText': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 81%] Built target samcat make -f apps/searchjoin/CMakeFiles/s4_search.dir/build.make apps/searchjoin/CMakeFiles/s4_search.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/searchjoin /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/searchjoin/CMakeFiles/s4_search.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/searchjoin/CMakeFiles/s4_search.dir/build.make apps/searchjoin/CMakeFiles/s4_search.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 81%] Building CXX object apps/searchjoin/CMakeFiles/s4_search.dir/search.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/searchjoin && /usr/bin/g++ -DSEARCHJOIN_HUGEDB=TRUE -DSEQAN_APP_VERSION=\"0.5.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/searchjoin/CMakeFiles/s4_search.dir/search.cpp.o -MF CMakeFiles/s4_search.dir/search.cpp.o.d -o CMakeFiles/s4_search.dir/search.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse.h:46, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:58: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/parallel/base.h:36, from /usr/include/c++/13/parallel/algobase.h:40, from /usr/include/c++/13/parallel/algorithm:36, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:48: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:42, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h:43, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:61: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find.h:47, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:46: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:47: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:76: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:91: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:102: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:107: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:110: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:111: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:114: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:121: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:125: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:131: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:188: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:344:10: required from 'void index(DbFinder&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:282:10: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:516:39: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h:764:19: warning: implicitly-declared 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] 764 | dbIndex.index = TIndex(db.text); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:142: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag]' 88 | Index(Index const & other) : | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h: In instantiation of 'void buildQuery(DbIndex >, seqan::Tag >&, Db&, TSeedLength) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TDbSpec = seqan::Tag; TSeedLength = unsigned int]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:374:15: required from 'void prepare(DbFinder&, Db&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:323:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:516:39: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h:888:32: warning: implicitly-declared 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] 888 | dbIndex.index[seedSet] = TIndex(db.text); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag]' 88 | Index(Index const & other) : | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:344:10: required from 'void index(DbFinder&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:282:10: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:524:39: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h:764:19: warning: implicitly-declared 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] 764 | dbIndex.index = TIndex(db.text); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag]' 88 | Index(Index const & other) : | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h: In instantiation of 'void buildQuery(DbIndex >, seqan::Tag >&, Db&, TSeedLength) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TDbSpec = seqan::Tag; TSeedLength = unsigned int]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:374:15: required from 'void prepare(DbFinder&, Db&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:323:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:524:39: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h:888:32: warning: implicitly-declared 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] 888 | dbIndex.index[seedSet] = TIndex(db.text); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag]' 88 | Index(Index const & other) : | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:344:10: required from 'void index(DbFinder&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:405:10: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:544:39: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h:764:19: warning: implicitly-declared 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] 764 | dbIndex.index = TIndex(db.text); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag]' 88 | Index(Index const & other) : | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h: In instantiation of 'void buildQuery(DbIndex >, seqan::Tag >&, Db&, TSeedLength) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TDbSpec = seqan::Tag; TSeedLength = unsigned int]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:374:15: required from 'void prepare(DbFinder&, Db&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:449:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:544:39: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h:888:32: warning: implicitly-declared 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] 888 | dbIndex.index[seedSet] = TIndex(db.text); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag]' 88 | Index(Index const & other) : | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:344:10: required from 'void index(DbFinder&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:405:10: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:552:39: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h:764:19: warning: implicitly-declared 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] 764 | dbIndex.index = TIndex(db.text); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag]' 88 | Index(Index const & other) : | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h: In instantiation of 'void buildQuery(DbIndex >, seqan::Tag >&, Db&, TSeedLength) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TDbSpec = seqan::Tag; TSeedLength = unsigned int]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:374:15: required from 'void prepare(DbFinder&, Db&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:449:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:552:39: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h:888:32: warning: implicitly-declared 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] 888 | dbIndex.index[seedSet] = TIndex(db.text); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag]' 88 | Index(Index const & other) : | ^~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:138: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(Iter > >&) [with TIndex = Index, Alloc > >, Owner > >, IndexSa > >; TSpec = Preorder]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:311:18: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:516:39: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:1731:24: warning: implicitly-declared 'constexpr seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 1731 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(Iter > >&) [with TIndex = Index, Alloc > >, Owner > >, IndexSa > >; TSpec = Preorder]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:311:18: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:524:39: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:1731:24: warning: implicitly-declared 'constexpr seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 1731 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(Iter > >&) [with TIndex = Index > >, Owner > >, IndexSa > >; TSpec = Preorder]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:311:18: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:456:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:544:39: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:1731:24: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] 1731 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(Iter > >&) [with TIndex = Index > >, Owner > >, IndexSa > >; TSpec = Preorder]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:311:18: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:456:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:552:39: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:1731:24: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] 1731 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index, Alloc > >, Owner > >, IndexSa > >; TSpec = TopDown<>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(Iter >&) [with TIndex = Index, Alloc > >, Owner > >, IndexSa > >; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:312:10: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:516:39: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index, Alloc > >, Owner > >, IndexSa > >; TSpec = TopDown<>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(Iter >&) [with TIndex = Index, Alloc > >, Owner > >, IndexSa > >; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:312:10: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:524:39: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index > >, Owner > >, IndexSa > >; TSpec = TopDown<>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(Iter >&) [with TIndex = Index > >, Owner > >, IndexSa > >; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:312:10: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:456:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:544:39: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index > >, Owner > >, IndexSa > >; TSpec = TopDown<>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(Iter >&) [with TIndex = Index > >, Owner > >, IndexSa > >; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:312:10: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:456:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:552:39: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:94, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:57: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc > >, InfixSegment>; typename Iterator >::Type = Iter, Alloc > >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc > >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc > >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc > >, InfixSegment>; typename Iterator >::Type = Iter, Alloc > >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1515:66: required from 'unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment, Alloc > >, InfixSegment>; TSeq2 = Segment, Alloc > >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/verifier.h:136:52: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:810:30: required from 'void execute(DbFinder, TDelegate, seqan::Tag >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Tag; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:508:31: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:96: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc > >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_iterator.h:80, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:86, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:56: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment > >, InfixSegment>; typename Iterator >::Type = Iter > >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment > >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter > >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment > >, InfixSegment>; typename Iterator >::Type = Iter > >, InfixSegment>, AdaptorIterator > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1515:66: required from 'unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment > >, InfixSegment>; TSeq2 = Segment > >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/verifier.h:136:52: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:810:30: required from 'void execute(DbFinder, TDelegate, seqan::Tag >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Tag; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:536:31: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment > >, seqan::InfixSegment>::Segment(const seqan::Segment > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String > >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment > >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment > >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(Iter >, VSTree > >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = Preorder]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:377:17: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = Preorder; TDfsOrder = Preorder_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:1880:20: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index, Alloc > >, Owner > >, IndexSa > >; TSpec = Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:527:18: required from 'bool seqan::_moveIteratorsDown(Finder_, Index, Backtracking >&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:432:27: required from 'bool seqan::_pushState(Finder_, Index, Backtracking >&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:1311:31: required from 'void seqan::_find(Finder_, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_; TDelegate = DbFinder, Alloc > >, Owner > >, Index, Alloc > >, Owner > >, IndexSa > >, Tag, Writer, Alloc > >, Owner > >, void>, Db, Alloc > >, Owner > >, Tag >, Tag >, Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:611:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:516:39: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared 'constexpr seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 630 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(Iter >, VSTree > >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = Truncated]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:377:17: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = Truncated; TDfsOrder = Preorder_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:1880:20: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index, Alloc > >, Owner > >, IndexSa > >; TSpec = Truncated]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:527:52: required from 'bool seqan::_moveIteratorsDown(Finder_, Index, Backtracking >&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:432:27: required from 'bool seqan::_pushState(Finder_, Index, Backtracking >&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:1311:31: required from 'void seqan::_find(Finder_, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_; TDelegate = DbFinder, Alloc > >, Owner > >, Index, Alloc > >, Owner > >, IndexSa > >, Tag, Writer, Alloc > >, Owner > >, void>, Db, Alloc > >, Owner > >, Tag >, Tag >, Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:611:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:516:39: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared 'constexpr seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 630 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(Iter >, VSTree > >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = Preorder]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:377:17: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = Preorder; TDfsOrder = Preorder_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:1880:20: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index, Alloc > >, Owner > >, IndexSa > >; TSpec = Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:527:18: required from 'bool seqan::_moveIteratorsDown(Finder_, Index, Backtracking >&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:432:27: required from 'bool seqan::_pushState(Finder_, Index, Backtracking >&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:1311:31: required from 'void seqan::_find(Finder_, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_; TDelegate = DbFinder, Alloc > >, Owner > >, Index, Alloc > >, Owner > >, IndexSa > >, Tag, Writer, Alloc > >, Owner > >, void>, Db, Alloc > >, Owner > >, Tag >, Tag >, Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:611:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:524:39: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared 'constexpr seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 630 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(Iter >, VSTree > >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = Truncated]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:377:17: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = Truncated; TDfsOrder = Preorder_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:1880:20: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index, Alloc > >, Owner > >, IndexSa > >; TSpec = Truncated]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:527:52: required from 'bool seqan::_moveIteratorsDown(Finder_, Index, Backtracking >&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:432:27: required from 'bool seqan::_pushState(Finder_, Index, Backtracking >&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:1311:31: required from 'void seqan::_find(Finder_, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_; TDelegate = DbFinder, Alloc > >, Owner > >, Index, Alloc > >, Owner > >, IndexSa > >, Tag, Writer, Alloc > >, Owner > >, void>, Db, Alloc > >, Owner > >, Tag >, Tag >, Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:611:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:524:39: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared 'constexpr seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 630 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(Iter >, VSTree > >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = Preorder]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:377:17: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = Preorder; TDfsOrder = Preorder_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:1880:20: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index > >, Owner > >, IndexSa > >; TSpec = Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:527:18: required from 'bool seqan::_moveIteratorsDown(Finder_, Index, Backtracking >&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:432:27: required from 'bool seqan::_pushState(Finder_, Index, Backtracking >&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:1311:31: required from 'void seqan::_find(Finder_, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_; TDelegate = DbFinder > >, Owner > >, Index > >, Owner > >, IndexSa > >, Tag, Writer > >, Owner > >, void>, Db > >, Owner > >, Tag >, Tag >, Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:611:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:456:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:544:39: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] 630 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(Iter >, VSTree > >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = Truncated]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:377:17: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = Truncated; TDfsOrder = Preorder_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:1880:20: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index > >, Owner > >, IndexSa > >; TSpec = Truncated]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:527:52: required from 'bool seqan::_moveIteratorsDown(Finder_, Index, Backtracking >&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:432:27: required from 'bool seqan::_pushState(Finder_, Index, Backtracking >&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:1311:31: required from 'void seqan::_find(Finder_, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_; TDelegate = DbFinder > >, Owner > >, Index > >, Owner > >, IndexSa > >, Tag, Writer > >, Owner > >, void>, Db > >, Owner > >, Tag >, Tag >, Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:611:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:456:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:544:39: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] 630 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(Iter >, VSTree > >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = Preorder]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:377:17: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = Preorder; TDfsOrder = Preorder_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:1880:20: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index > >, Owner > >, IndexSa > >; TSpec = Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:527:18: required from 'bool seqan::_moveIteratorsDown(Finder_, Index, Backtracking >&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:432:27: required from 'bool seqan::_pushState(Finder_, Index, Backtracking >&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:1311:31: required from 'void seqan::_find(Finder_, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_; TDelegate = DbFinder > >, Owner > >, Index > >, Owner > >, IndexSa > >, Tag, Writer > >, Owner > >, void>, Db > >, Owner > >, Tag >, Tag >, Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:611:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:456:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:552:39: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] 630 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(Iter >, VSTree > >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = Truncated]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:377:17: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = Truncated; TDfsOrder = Preorder_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:1880:20: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index > >, Owner > >, IndexSa > >; TSpec = Truncated]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:527:52: required from 'bool seqan::_moveIteratorsDown(Finder_, Index, Backtracking >&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:432:27: required from 'bool seqan::_pushState(Finder_, Index, Backtracking >&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:1311:31: required from 'void seqan::_find(Finder_, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_; TDelegate = DbFinder > >, Owner > >, Index > >, Owner > >, IndexSa > >, Tag, Writer > >, Owner > >, void>, Db > >, Owner > >, Tag >, Tag >, Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:611:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:456:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:552:39: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] 630 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc > >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc > >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc > >, InfixSegment>; typename Iterator >::Type = Iter, Alloc > >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc > >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc > >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc > >, InfixSegment>; typename Iterator >::Type = Iter, Alloc > >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1515:66: required from 'unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment, Alloc > >, InfixSegment>; TSeq2 = Segment, Alloc > >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/verifier.h:136:52: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:810:30: required from 'void execute(DbFinder, TDelegate, seqan::Tag >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Tag; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:508:31: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc > >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String > >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment > >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment > >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment > >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment > >, InfixSegment>; typename Iterator >::Type = Iter > >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment > >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter > >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment > >, InfixSegment>; typename Iterator >::Type = Iter > >, InfixSegment>, AdaptorIterator > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1515:66: required from 'unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment > >, InfixSegment>; TSeq2 = Segment > >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/verifier.h:136:52: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:810:30: required from 'void execute(DbFinder, TDelegate, seqan::Tag >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Tag; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:536:31: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment > >, seqan::InfixSegment>::Segment(const seqan::Segment > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String > >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/writer.h:132:10: required from 'void _writeRecord(Writer&, const TString1&, const TString2&) [with TDb = Db, seqan::Alloc > >, seqan::Owner > >, void>; TDbQuery = Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >; TSpec = seqan::Tag; TString1 = seqan::Segment >, seqan::InfixSegment>; TString2 = seqan::Segment >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/writer.h:150:17: required from 'void _write(Writer&, typename seqan::Size::Type, typename seqan::Size::Type) [with TDb = Db, seqan::Alloc > >, seqan::Owner > >, void>; TDbQuery = Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >; TSpec = seqan::Tag; typename seqan::Size::Type = unsigned int; typename seqan::Size::Type = unsigned int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/writer.h:98:15: required from 'void Writer::operator()(typename seqan::Size::Type, typename seqan::Size::Type) [with TDb = Db, seqan::Alloc > >, seqan::Owner > >, void>; TDbQuery = Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >; TSpec = seqan::Tag; typename seqan::Size::Type = unsigned int; typename seqan::Size::Type = unsigned int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/verifier.h:142:13: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:810:30: required from 'void execute(DbFinder, TDelegate, seqan::Tag >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Tag; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:508:31: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/writer.h:132:10: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/writer.h:98:15: required from 'void Writer::operator()(typename seqan::Size::Type, typename seqan::Size::Type) [with TDb = Db, seqan::Alloc > >, seqan::Owner > >, void>; TDbQuery = Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >; TSpec = seqan::Tag; typename seqan::Size::Type = unsigned int; typename seqan::Size::Type = unsigned int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/verifier.h:142:13: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:810:30: required from 'void execute(DbFinder, TDelegate, seqan::Tag >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Tag; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:508:31: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc > >; TString = String, Alloc > >; TSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc > >; TSequence = String, Alloc > >; TSetSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:198:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:516:39: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_aggregate.h:58, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:98: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc > >; TString = String, Alloc > >; TSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc > >; TSequence = String, Alloc > >; TSetSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:198:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:524:39: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc > >; TString = String > >; TSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc > >; TSequence = String > >; TSetSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:198:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:456:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:544:39: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc > >; TString = String > >; TSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc > >; TSequence = String > >; TSetSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:198:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:456:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:552:39: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:56: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 5, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:414:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:516:39: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 5, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 4, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:415:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:516:39: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 4, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:432:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:516:39: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:443:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:516:39: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:243:12: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:516:39: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 5, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:414:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:524:39: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 5, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 4, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:415:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:524:39: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 4, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:432:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:524:39: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:443:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:524:39: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:414:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:456:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:544:39: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:415:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:456:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:544:39: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:432:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:456:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:544:39: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:443:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:456:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:544:39: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:414:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:456:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:552:39: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:415:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:456:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:552:39: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:432:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:456:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:552:39: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:443:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:456:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:552:39: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:516:39: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:516:39: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:524:39: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:524:39: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:456:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:544:39: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:456:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:544:39: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:456:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:552:39: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:456:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:552:39: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:516:39: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:516:39: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:516:39: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:516:39: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:173:12: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:516:39: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:312:20: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:516:39: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:312:20: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:516:39: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = SorterSpec, Tuple, Tag >, int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender3.h:123:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:218:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:376:49: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:516:39: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:447:21: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:465:13: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:516:39: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:447:21: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:465:13: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:524:39: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:447:21: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:465:13: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:456:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:544:39: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:447:21: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:465:13: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:456:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:552:39: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:218:20: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:516:39: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:218:20: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:516:39: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended, Tuple >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:302:21: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:320:13: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:516:39: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple, Tag >; TConfig = MapperConfigSize<_skew3NMapExtended, Tuple, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger3.h:111:17: required from 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:329:13: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/search.cpp:516:39: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ [ 82%] Linking CXX executable ../../bin/s4_search cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/searchjoin && /usr/bin/cmake -E cmake_link_script CMakeFiles/s4_search.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/s4_search.dir/search.cpp.o -o ../../bin/s4_search -lrt In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function 'eraseBack': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551424' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function 'eraseBack': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function 'eraseBack': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551424' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function 'eraseBack': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function 'eraseBack': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551424' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function 'eraseBack': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function 'eraseBack': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551424' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function 'eraseBack': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:424:21: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:433:21: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:424:21: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:433:21: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:424:21: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:433:21: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:424:21: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:433:21: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'append' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1330:13: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function 'append': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'append' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1330:13: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function 'append': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:280:21: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:290:21: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from '_toText' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function '_toText': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:328:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'process.isra': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from '_toHtml' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/tool_doc.h:285:34: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551568' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function '_toHtml': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:328:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'process.isra': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++.isra' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger3.h:127:17: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'operator++.isra': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:328:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'process.isra': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:328:26, inlined from '__ct ' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20, inlined from '_createSuffixArrayPipelining.isra' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function '_createSuffixArrayPipelining.isra': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 82%] Built target s4_search make -f apps/searchjoin/CMakeFiles/s4_join.dir/build.make apps/searchjoin/CMakeFiles/s4_join.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/searchjoin /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/searchjoin/CMakeFiles/s4_join.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/searchjoin/CMakeFiles/s4_join.dir/build.make apps/searchjoin/CMakeFiles/s4_join.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 82%] Building CXX object apps/searchjoin/CMakeFiles/s4_join.dir/join.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/searchjoin && /usr/bin/g++ -DSEARCHJOIN_HUGEDB=TRUE -DSEQAN_APP_VERSION=\"0.5.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/searchjoin/CMakeFiles/s4_join.dir/join.cpp.o -MF CMakeFiles/s4_join.dir/join.cpp.o.d -o CMakeFiles/s4_join.dir/join.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse.h:46, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:58: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/parallel/base.h:36, from /usr/include/c++/13/parallel/algobase.h:40, from /usr/include/c++/13/parallel/algorithm:36, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:48: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:42, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h:43, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:61: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find.h:47, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:46: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:47: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:76: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:91: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:102: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:107: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:110: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:111: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:114: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:121: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:125: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:131: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:188: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:355:10: required from 'void index(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:264:10: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:319:37: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h:764:19: warning: implicitly-declared 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] 764 | dbIndex.index = TIndex(db.text); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:142: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag]' 88 | Index(Index const & other) : | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:344:10: required from 'void index(DbFinder&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:264:10: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:323:41: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h:764:19: warning: implicitly-declared 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] 764 | dbIndex.index = TIndex(db.text); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag]' 88 | Index(Index const & other) : | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h: In instantiation of 'void buildQuery(DbIndex >, seqan::Tag >&, Db&, TSeedLength) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TDbSpec = void; TSeedLength = unsigned int]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:374:15: required from 'void prepare(DbFinder&, Db&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:279:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:323:41: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h:888:32: warning: implicitly-declared 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] 888 | dbIndex.index[seedSet] = TIndex(db.text); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag]' 88 | Index(Index const & other) : | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:355:10: required from 'void index(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:264:10: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:332:37: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h:764:19: warning: implicitly-declared 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] 764 | dbIndex.index = TIndex(db.text); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag]' 88 | Index(Index const & other) : | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:344:10: required from 'void index(DbFinder&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:264:10: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:336:41: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h:764:19: warning: implicitly-declared 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] 764 | dbIndex.index = TIndex(db.text); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag]' 88 | Index(Index const & other) : | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h: In instantiation of 'void buildQuery(DbIndex >, seqan::Tag >&, Db&, TSeedLength) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TDbSpec = void; TSeedLength = unsigned int]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:374:15: required from 'void prepare(DbFinder&, Db&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:279:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:336:41: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h:888:32: warning: implicitly-declared 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] 888 | dbIndex.index[seedSet] = TIndex(db.text); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag]' 88 | Index(Index const & other) : | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:355:10: required from 'void index(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:264:10: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:357:37: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h:764:19: warning: implicitly-declared 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] 764 | dbIndex.index = TIndex(db.text); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag]' 88 | Index(Index const & other) : | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:344:10: required from 'void index(DbFinder&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:264:10: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:361:41: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h:764:19: warning: implicitly-declared 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] 764 | dbIndex.index = TIndex(db.text); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag]' 88 | Index(Index const & other) : | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h: In instantiation of 'void buildQuery(DbIndex >, seqan::Tag >&, Db&, TSeedLength) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TDbSpec = void; TSeedLength = unsigned int]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:374:15: required from 'void prepare(DbFinder&, Db&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:279:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:361:41: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h:888:32: warning: implicitly-declared 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] 888 | dbIndex.index[seedSet] = TIndex(db.text); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag]' 88 | Index(Index const & other) : | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:355:10: required from 'void index(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:264:10: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:370:37: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h:764:19: warning: implicitly-declared 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] 764 | dbIndex.index = TIndex(db.text); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag]' 88 | Index(Index const & other) : | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:344:10: required from 'void index(DbFinder&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:264:10: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:374:41: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h:764:19: warning: implicitly-declared 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] 764 | dbIndex.index = TIndex(db.text); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag]' 88 | Index(Index const & other) : | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h: In instantiation of 'void buildQuery(DbIndex >, seqan::Tag >&, Db&, TSeedLength) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TDbSpec = void; TSeedLength = unsigned int]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:374:15: required from 'void prepare(DbFinder&, Db&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:279:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:374:41: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/db.h:888:32: warning: implicitly-declared 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] 888 | dbIndex.index[seedSet] = TIndex(db.text); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag]' 88 | Index(Index const & other) : | ^~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:138: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(Iter > >&) [with TIndex = Index, Alloc > >, Owner > >, IndexSa > >; TSpec = Preorder]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:311:18: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:323:41: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:1731:24: warning: implicitly-declared 'constexpr seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 1731 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(Iter > >&) [with TIndex = Index, Alloc > >, Owner > >, IndexSa > >; TSpec = Preorder]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:311:18: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:336:41: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:1731:24: warning: implicitly-declared 'constexpr seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 1731 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(Iter > >&) [with TIndex = Index > >, Owner > >, IndexSa > >; TSpec = Preorder]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:311:18: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:361:41: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:1731:24: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] 1731 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(Iter > >&) [with TIndex = Index > >, Owner > >, IndexSa > >; TSpec = Preorder]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:311:18: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:374:41: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:1731:24: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] 1731 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index, Alloc > >, Owner > >, IndexSa > >; TSpec = TopDown<>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(Iter >&) [with TIndex = Index, Alloc > >, Owner > >, IndexSa > >; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:312:10: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:323:41: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index, Alloc > >, Owner > >, IndexSa > >; TSpec = TopDown<>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(Iter >&) [with TIndex = Index, Alloc > >, Owner > >, IndexSa > >; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:312:10: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:336:41: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index > >, Owner > >, IndexSa > >; TSpec = TopDown<>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(Iter >&) [with TIndex = Index > >, Owner > >, IndexSa > >; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:312:10: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:361:41: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index > >, Owner > >, IndexSa > >; TSpec = TopDown<>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(Iter >&) [with TIndex = Index > >, Owner > >, IndexSa > >; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:312:10: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:374:41: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:94, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:57: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc > >, InfixSegment>; typename Iterator >::Type = Iter, Alloc > >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc > >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc > >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc > >, InfixSegment>; typename Iterator >::Type = Iter, Alloc > >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1515:66: required from 'unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment, Alloc > >, InfixSegment>; TSeq2 = Segment, Alloc > >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/verifier.h:136:52: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >; TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = void; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:791:30: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Tag; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Tag; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:311:29: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:96: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc > >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_iterator.h:80, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:86, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:56: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/writer.h:132:10: required from 'void _writeRecord(Writer&, const TString1&, const TString2&) [with TDb = Db, seqan::Alloc > >, seqan::Owner > >, void>; TDbQuery = Db, seqan::Alloc > >, seqan::Owner > >, void>; TSpec = seqan::Tag; TString1 = seqan::Segment >, seqan::InfixSegment>; TString2 = seqan::Segment >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/writer.h:197:21: required from 'bool close(Writer >&) [with TDb = Db, seqan::Alloc > >, seqan::Owner > >, void>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:293:10: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Tag; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:311:29: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment > >, InfixSegment>; typename Iterator >::Type = Iter > >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment > >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter > >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment > >, InfixSegment>; typename Iterator >::Type = Iter > >, InfixSegment>, AdaptorIterator > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1515:66: required from 'unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment > >, InfixSegment>; TSeq2 = Segment > >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/verifier.h:136:52: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >; TText = seqan::StringSet > >, seqan::Owner > >; TSpec = void; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:791:30: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Tag; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Tag; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:349:29: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment > >, seqan::InfixSegment>::Segment(const seqan::Segment > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String > >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment > >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment > >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(Iter >, VSTree > >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = Preorder]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:377:17: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = Preorder; TDfsOrder = Preorder_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:1880:20: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index, Alloc > >, Owner > >, IndexSa > >; TSpec = Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:527:18: required from 'bool seqan::_moveIteratorsDown(Finder_, Index, Backtracking >&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:432:27: required from 'bool seqan::_pushState(Finder_, Index, Backtracking >&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:1311:31: required from 'void seqan::_find(Finder_, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_; TDelegate = DbFinder, Alloc > >, Owner > >, Index, Alloc > >, Owner > >, IndexSa > >, void, Writer, Alloc > >, Owner > >, void>, Db, Alloc > >, Owner > >, void>, Tag >, Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:611:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:323:41: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared 'constexpr seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 630 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(Iter >, VSTree > >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = Truncated]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:377:17: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = Truncated; TDfsOrder = Preorder_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:1880:20: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index, Alloc > >, Owner > >, IndexSa > >; TSpec = Truncated]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:527:52: required from 'bool seqan::_moveIteratorsDown(Finder_, Index, Backtracking >&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:432:27: required from 'bool seqan::_pushState(Finder_, Index, Backtracking >&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:1311:31: required from 'void seqan::_find(Finder_, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_; TDelegate = DbFinder, Alloc > >, Owner > >, Index, Alloc > >, Owner > >, IndexSa > >, void, Writer, Alloc > >, Owner > >, void>, Db, Alloc > >, Owner > >, void>, Tag >, Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:611:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:323:41: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared 'constexpr seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 630 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(Iter >, VSTree > >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = Preorder]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:377:17: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = Preorder; TDfsOrder = Preorder_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:1880:20: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index, Alloc > >, Owner > >, IndexSa > >; TSpec = Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:527:18: required from 'bool seqan::_moveIteratorsDown(Finder_, Index, Backtracking >&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:432:27: required from 'bool seqan::_pushState(Finder_, Index, Backtracking >&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:1311:31: required from 'void seqan::_find(Finder_, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_; TDelegate = DbFinder, Alloc > >, Owner > >, Index, Alloc > >, Owner > >, IndexSa > >, void, Writer, Alloc > >, Owner > >, void>, Db, Alloc > >, Owner > >, void>, Tag >, Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:611:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:336:41: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared 'constexpr seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 630 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(Iter >, VSTree > >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = Truncated]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:377:17: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = Truncated; TDfsOrder = Preorder_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:1880:20: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index, Alloc > >, Owner > >, IndexSa > >; TSpec = Truncated]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:527:52: required from 'bool seqan::_moveIteratorsDown(Finder_, Index, Backtracking >&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:432:27: required from 'bool seqan::_pushState(Finder_, Index, Backtracking >&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:1311:31: required from 'void seqan::_find(Finder_, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_; TDelegate = DbFinder, Alloc > >, Owner > >, Index, Alloc > >, Owner > >, IndexSa > >, void, Writer, Alloc > >, Owner > >, void>, Db, Alloc > >, Owner > >, void>, Tag >, Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:611:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:336:41: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared 'constexpr seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 630 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(Iter >, VSTree > >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = Preorder]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:377:17: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = Preorder; TDfsOrder = Preorder_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:1880:20: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index > >, Owner > >, IndexSa > >; TSpec = Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:527:18: required from 'bool seqan::_moveIteratorsDown(Finder_, Index, Backtracking >&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:432:27: required from 'bool seqan::_pushState(Finder_, Index, Backtracking >&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:1311:31: required from 'void seqan::_find(Finder_, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_; TDelegate = DbFinder > >, Owner > >, Index > >, Owner > >, IndexSa > >, void, Writer > >, Owner > >, void>, Db > >, Owner > >, void>, Tag >, Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:611:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:361:41: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] 630 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(Iter >, VSTree > >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = Truncated]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:377:17: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = Truncated; TDfsOrder = Preorder_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:1880:20: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index > >, Owner > >, IndexSa > >; TSpec = Truncated]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:527:52: required from 'bool seqan::_moveIteratorsDown(Finder_, Index, Backtracking >&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:432:27: required from 'bool seqan::_pushState(Finder_, Index, Backtracking >&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:1311:31: required from 'void seqan::_find(Finder_, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_; TDelegate = DbFinder > >, Owner > >, Index > >, Owner > >, IndexSa > >, void, Writer > >, Owner > >, void>, Db > >, Owner > >, void>, Tag >, Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:611:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:361:41: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] 630 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(Iter >, VSTree > >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = Preorder]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:377:17: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = Preorder; TDfsOrder = Preorder_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:1880:20: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index > >, Owner > >, IndexSa > >; TSpec = Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:527:18: required from 'bool seqan::_moveIteratorsDown(Finder_, Index, Backtracking >&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:432:27: required from 'bool seqan::_pushState(Finder_, Index, Backtracking >&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:1311:31: required from 'void seqan::_find(Finder_, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_; TDelegate = DbFinder > >, Owner > >, Index > >, Owner > >, IndexSa > >, void, Writer > >, Owner > >, void>, Db > >, Owner > >, void>, Tag >, Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:611:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:374:41: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] 630 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(Iter >, VSTree > >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = Truncated]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:377:17: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = Truncated; TDfsOrder = Preorder_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:1880:20: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index > >, Owner > >, IndexSa > >; TSpec = Truncated]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:527:52: required from 'bool seqan::_moveIteratorsDown(Finder_, Index, Backtracking >&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:432:27: required from 'bool seqan::_pushState(Finder_, Index, Backtracking >&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find2_backtracking.h:1311:31: required from 'void seqan::_find(Finder_, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_; TDelegate = DbFinder > >, Owner > >, Index > >, Owner > >, IndexSa > >, void, Writer > >, Owner > >, void>, Db > >, Owner > >, void>, Tag >, Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:611:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:374:41: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] 630 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc > >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc > >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc > >, InfixSegment>; typename Iterator >::Type = Iter, Alloc > >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc > >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc > >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc > >, InfixSegment>; typename Iterator >::Type = Iter, Alloc > >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1515:66: required from 'unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment, Alloc > >, InfixSegment>; TSeq2 = Segment, Alloc > >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/verifier.h:136:52: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >; TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = void; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:791:30: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Tag; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Tag; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:311:29: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc > >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, StreamIterator > >; TContainer = Segment >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/writer.h:132:10: required from 'void _writeRecord(Writer&, const TString1&, const TString2&) [with TDb = Db, seqan::Alloc > >, seqan::Owner > >, void>; TDbQuery = Db, seqan::Alloc > >, seqan::Owner > >, void>; TSpec = seqan::Tag; TString1 = seqan::Segment >, seqan::InfixSegment>; TString2 = seqan::Segment >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/writer.h:197:21: required from 'bool close(Writer >&) [with TDb = Db, seqan::Alloc > >, seqan::Owner > >, void>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:293:10: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Tag; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:311:29: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String > >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment > >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment > >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment > >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment > >, InfixSegment>; typename Iterator >::Type = Iter > >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment > >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter > >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment > >, InfixSegment>; typename Iterator >::Type = Iter > >, InfixSegment>, AdaptorIterator > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1515:66: required from 'unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment > >, InfixSegment>; TSeq2 = Segment > >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/verifier.h:136:52: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >; TText = seqan::StringSet > >, seqan::Owner > >; TSpec = void; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:791:30: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Tag; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Tag; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:349:29: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment > >, seqan::InfixSegment>::Segment(const seqan::Segment > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String > >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc > >; TString = String, Alloc > >; TSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc > >; TSequence = String, Alloc > >; TSetSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:198:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:323:41: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_aggregate.h:58, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:98: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc > >; TString = String, Alloc > >; TSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc > >; TSequence = String, Alloc > >; TSetSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:198:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:336:41: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc > >; TString = String > >; TSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc > >; TSequence = String > >; TSetSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:198:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:361:41: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc > >; TString = String > >; TSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc > >; TSequence = String > >; TSetSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:198:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:374:41: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:56: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 5, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:414:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:323:41: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 5, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 4, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:415:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:323:41: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 4, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:432:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:323:41: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:443:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:323:41: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:243:12: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:323:41: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 5, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:414:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:336:41: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 5, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 4, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:415:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:336:41: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 4, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:432:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:336:41: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:443:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:336:41: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:414:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:361:41: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:415:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:361:41: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:432:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:361:41: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:443:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:361:41: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:414:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:374:41: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:415:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:374:41: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:432:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:374:41: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:443:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:374:41: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:323:41: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:323:41: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:336:41: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:336:41: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:361:41: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:361:41: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:374:41: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:374:41: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:323:41: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:323:41: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:323:41: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:323:41: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:173:12: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:323:41: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:312:20: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:323:41: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:312:20: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:323:41: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = SorterSpec, Tuple, Tag >, int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender3.h:123:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:218:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:376:49: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:323:41: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:447:21: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:465:13: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:323:41: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:447:21: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:465:13: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:336:41: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:447:21: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:465:13: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:361:41: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:447:21: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:465:13: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:374:41: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:218:20: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:323:41: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:218:20: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:323:41: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended, Tuple >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:302:21: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:320:13: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:323:41: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple, Tag >; TConfig = MapperConfigSize<_skew3NMapExtended, Tuple, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger3.h:111:17: required from 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:329:13: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin/join.cpp:323:41: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ [ 84%] Linking CXX executable ../../bin/s4_join cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/searchjoin && /usr/bin/cmake -E cmake_link_script CMakeFiles/s4_join.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/s4_join.dir/join.cpp.o -o ../../bin/s4_join -lrt In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function 'eraseBack': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551424' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function 'eraseBack': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:424:21: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:433:21: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function 'eraseBack': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551424' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function 'eraseBack': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:424:21: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:433:21: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function 'eraseBack': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551424' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function 'eraseBack': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:424:21: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:433:21: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function 'eraseBack': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551424' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function 'eraseBack': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:424:21: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:433:21: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'append' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1330:13: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function 'append': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:280:21: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:290:21: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:328:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'process.isra': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++.isra' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger3.h:127:17: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'operator++.isra': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'append' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1330:13: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function 'append': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:328:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'process.isra': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from '_toText' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function '_toText': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from '_toHtml' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/tool_doc.h:285:34: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551568' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function '_toHtml': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:328:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'process.isra': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:328:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'process.isra': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 84%] Built target s4_join make -f apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build.make apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqan_tcoffee /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/seqan_tcoffee /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build.make apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 85%] Building CXX object apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/seqan_tcoffee.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/seqan_tcoffee && /usr/bin/g++ -DSEQAN_APP_VERSION=\"1.13.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/seqan_tcoffee.cpp.o -MF CMakeFiles/seqan_tcoffee.dir/seqan_tcoffee.cpp.o.d -o CMakeFiles/seqan_tcoffee.dir/seqan_tcoffee.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqan_tcoffee/seqan_tcoffee.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score.h:43, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_msa.h:37, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqan_tcoffee/seqan_tcoffee.cpp:23: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/debug_test_system.h:150, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqan_tcoffee/seqan_tcoffee.cpp:22: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_msa.h:39: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_msa.h:41: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_msa.h:44: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_msa/graph_align_tcoffee_base.h:304:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 304 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqan_tcoffee/seqan_tcoffee.cpp:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:56, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_msa.h:40: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h: In instantiation of 'void seqan::findIntervalsExcludeTouching(String&, const Graph&, const TPropertyMap&, TValue) [with TSpec = Directed >; TPropertyMap = String > > > >; TValue = long unsigned int; TCargo = Pair >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:571:49: required from 'void seqan::matchRefinement(TAlignmentString&, StringSet&, TScore&, TOutGraph&, typename Size::Type>::Type, TAnnotation&, Tag) [with TAlignmentString = String >; TAnnotation = bool; TOutGraph = Graph, Alloc<> >, Dependent > >, long unsigned int, Tag > >; TSequence = String, Alloc<> >; TSetSpec = Dependent >; TScore = long unsigned int; TTagSpec = TagExactRefinement_; typename Size::Type>::Type = long unsigned int; typename Value::Type = Fragment<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:678:20: required from 'void seqan::matchRefinement(TFragmentString&, StringSet&, TOutGraph&) [with TFragmentString = String >; TOutGraph = Graph, Alloc<> >, Dependent > >, long unsigned int, Tag > >; TSequence = String, Alloc<> >; TSetSpec = Dependent >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_msa/graph_align_tcoffee_base.h:191:20: required from 'void seqan::buildAlignmentGraph(String&, Graph >&, FrequencyCounting) [with TFragment = Fragment<>; TSpec1 = Alloc<>; TStringSet = StringSet, Alloc<> >, Dependent > >; TCargo = long unsigned int; TSpec = Tag; FrequencyCounting = const Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_msa/graph_align_tcoffee_msa.h:178:24: required from 'void seqan::evaluateAlignment(const MsaOptions&) [with TAlphabet = SimpleType; TScore = Score, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqan_tcoffee/seqan_tcoffee.cpp:281:26: required from 'void _initMsaParams(seqan::ArgumentParser&, TScore&) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqan_tcoffee/seqan_tcoffee.cpp:305:29: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:1667:18: warning: implicitly-declared 'seqan::IntervalTreeNode > > >& seqan::IntervalTreeNode > > >::operator=(const seqan::IntervalTreeNode > > >&)' is deprecated [-Wdeprecated-copy] 1667 | act_prop = property(pm, act_knot); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode > > >' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:1679:23: warning: implicitly-declared 'seqan::IntervalTreeNode > > >& seqan::IntervalTreeNode > > >::operator=(const seqan::IntervalTreeNode > > >&)' is deprecated [-Wdeprecated-copy] 1679 | next_prop = property(pm, targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode > > >' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:1701:27: warning: implicitly-declared 'seqan::IntervalTreeNode > > >& seqan::IntervalTreeNode > > >::operator=(const seqan::IntervalTreeNode > > >&)' is deprecated [-Wdeprecated-copy] 1701 | next_prop = property(pm, targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode > > >' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqan_tcoffee/seqan_tcoffee.cpp:46:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqan_tcoffee/seqan_tcoffee.cpp:66:19: required from 'void customizedMsaAlignment(const seqan::MsaOptions&) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqan_tcoffee/seqan_tcoffee.cpp:290:31: required from 'void _initMsaParams(seqan::ArgumentParser&, TScore&) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqan_tcoffee/seqan_tcoffee.cpp:305:29: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:58: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqan_tcoffee/seqan_tcoffee.cpp:46:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqan_tcoffee/seqan_tcoffee.cpp:66:19: required from 'void customizedMsaAlignment(const seqan::MsaOptions&) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqan_tcoffee/seqan_tcoffee.cpp:290:31: required from 'void _initMsaParams(seqan::ArgumentParser&, TScore&) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqan_tcoffee/seqan_tcoffee.cpp:305:29: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqan_tcoffee/seqan_tcoffee.cpp:46:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqan_tcoffee/seqan_tcoffee.cpp:66:19: required from 'void customizedMsaAlignment(const seqan::MsaOptions&) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqan_tcoffee/seqan_tcoffee.cpp:290:31: required from 'void _initMsaParams(seqan::ArgumentParser&, TScore&) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqan_tcoffee/seqan_tcoffee.cpp:305:29: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqan_tcoffee/seqan_tcoffee.cpp:46:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqan_tcoffee/seqan_tcoffee.cpp:66:19: required from 'void customizedMsaAlignment(const seqan::MsaOptions&) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqan_tcoffee/seqan_tcoffee.cpp:290:31: required from 'void _initMsaParams(seqan::ArgumentParser&, TScore&) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqan_tcoffee/seqan_tcoffee.cpp:305:29: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqan_tcoffee/seqan_tcoffee.cpp:46:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqan_tcoffee/seqan_tcoffee.cpp:66:19: required from 'void customizedMsaAlignment(const seqan::MsaOptions&) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqan_tcoffee/seqan_tcoffee.cpp:290:31: required from 'void _initMsaParams(seqan::ArgumentParser&, TScore&) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqan_tcoffee/seqan_tcoffee.cpp:305:29: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqan_tcoffee/seqan_tcoffee.cpp:46:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqan_tcoffee/seqan_tcoffee.cpp:66:19: required from 'void customizedMsaAlignment(const seqan::MsaOptions&) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqan_tcoffee/seqan_tcoffee.cpp:290:31: required from 'void _initMsaParams(seqan::ArgumentParser&, TScore&) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqan_tcoffee/seqan_tcoffee.cpp:305:29: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqan_tcoffee/seqan_tcoffee.cpp:46:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqan_tcoffee/seqan_tcoffee.cpp:66:19: required from 'void customizedMsaAlignment(const seqan::MsaOptions&) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqan_tcoffee/seqan_tcoffee.cpp:290:31: required from 'void _initMsaParams(seqan::ArgumentParser&, TScore&) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqan_tcoffee/seqan_tcoffee.cpp:305:29: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119: In function 'seqan::lexicalCast > >(seqan::String > const&)int', inlined from 'seqan::read, seqan::Tag, seqan::Iter, std::char_traits >, seqan::StreamIterator > > >(seqan::Score, seqan::Tag > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:140:79, inlined from 'seqan::read, seqan::Tag, seqan::Iter, std::char_traits >, seqan::StreamIterator > > >(seqan::Score, seqan::Tag > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:155:9, inlined from 'seqan::loadScoreMatrix, seqan::Tag >(seqan::Score, seqan::Tag > >&, char const*)bool [clone .isra.0]' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score/score_matrix_io.h:183:9: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::loadScoreMatrix, seqan::Tag >(seqan::Score, seqan::Tag > >&, char const*)bool [clone .isra.0]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned long': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const long unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned long const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)int', inlined from 'seqan::read >, seqan::Fragment > >, seqan::Alloc, int, seqan::Alloc, seqan::StringSet >, seqan::Owner > > >(std::basic_ifstream >&, seqan::String > >, seqan::Alloc >&, seqan::String >&, seqan::StringSet >, seqan::Owner > > const&, seqan::Tag)void [clone .isra.0]' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_msa/graph_align_tcoffee_io.h:209:58: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::read >, seqan::Fragment > >, seqan::Alloc, int, seqan::Alloc, seqan::StringSet >, seqan::Owner > > >(std::basic_ifstream >&, seqan::String > >, seqan::Alloc >&, seqan::String >&, seqan::StringSet >, seqan::Owner > > const&, seqan::Tag)void [clone .isra.0]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ [ 85%] Linking CXX executable ../../bin/seqan_tcoffee cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/seqan_tcoffee && /usr/bin/cmake -E cmake_link_script CMakeFiles/seqan_tcoffee.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/seqan_tcoffee.dir/seqan_tcoffee.cpp.o -o ../../bin/seqan_tcoffee -lrt In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from '_toText' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function '_toText': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'obtainId' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_idmanager.h:166:15, inlined from 'addVertex' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:525:36, inlined from '_createVertices' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_interface.h:704:67, inlined from '_copyGraph' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:274:32, inlined from '_copyGraph' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:300:15, inlined from '__ct ' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:87:23, inlined from 'construct' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9, inlined from 'valueConstruct' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28, inlined from '_arrayConstructMoveDefault' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:511:23, inlined from '_arrayConstructMovePointer' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:1055:31, inlined from 'arrayConstructMove' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:1064:31, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1683:27, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_.constprop.isra' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function 'resize_.constprop.isra': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'obtainId' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_idmanager.h:166:15, inlined from 'addVertex' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:525:36, inlined from '_createVertices' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_interface.h:704:67, inlined from '_copyGraph' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:276:32, inlined from '_copyGraph' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:300:15, inlined from '__ct ' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:87:23, inlined from 'construct' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9, inlined from 'valueConstruct' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28, inlined from '_arrayConstructMoveDefault' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:511:23, inlined from '_arrayConstructMovePointer' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:1055:31, inlined from 'arrayConstructMove' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:1064:31, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1683:27, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_.constprop.isra' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function 'resize_.constprop.isra': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 85%] Built target seqan_tcoffee make -f apps/seqcons2/CMakeFiles/seqcons2.dir/build.make apps/seqcons2/CMakeFiles/seqcons2.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/seqcons2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/seqcons2/CMakeFiles/seqcons2.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/seqcons2/CMakeFiles/seqcons2.dir/build.make apps/seqcons2/CMakeFiles/seqcons2.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 87%] Building CXX object apps/seqcons2/CMakeFiles/seqcons2.dir/seqcons.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/seqcons2 && /usr/bin/g++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/seqcons2/CMakeFiles/seqcons2.dir/seqcons.cpp.o -MF CMakeFiles/seqcons2.dir/seqcons.cpp.o.d -o CMakeFiles/seqcons2.dir/seqcons.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse.h:46, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons.cpp:37: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/stdexcept:39, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons.cpp:35: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 87%] Building CXX object apps/seqcons2/CMakeFiles/seqcons2.dir/seqcons_app.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/seqcons2 && /usr/bin/g++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/seqcons2/CMakeFiles/seqcons2.dir/seqcons_app.cpp.o -MF CMakeFiles/seqcons2.dir/seqcons_app.cpp.o.d -o CMakeFiles/seqcons2.dir/seqcons_app.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign.h:45, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:40: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/unique_ptr.h:37, from /usr/include/c++/13/memory:78, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.h:38, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:35: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign.h:47: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:41: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_msa.h:44, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign.h:48: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_msa/graph_align_tcoffee_base.h:304:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 304 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus.h:59: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_library.h:88:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 88 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_library.h:99:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::unary_function >, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:42, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/overlap_info_computation.h:38, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus.h:65: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:47: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:76: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:91: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:102: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:107: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:110: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:111: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:114: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:121: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:125: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:131: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:188: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:90: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps, Alloc<> >, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; TDifference = long unsigned int]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:1618:57: required from 'void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_fstream; TContigGaps = Gaps, Alloc<> >, AnchorGaps, Alloc<> > > >; TReadGaps = Gaps >, AnchorGaps, Alloc<> > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_fstream; TSpec = void; TConfig = FragmentStoreConfig; TContigId = unsigned int; TPos = int; TNum = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:145:27: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 773 | Iter > > result = lhs; | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 775 | return result; | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score.h:43, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:45: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:58: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:116:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; typename Reference > > >::Type = Proxy, Alloc<> >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, AnchorGaps, Alloc<> > > >; TSpec = GapsIterator, Alloc<> > > >; typename Reference >::Type = Proxy, Alloc<> >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:1628:32: required from 'void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_fstream; TContigGaps = Gaps, Alloc<> >, AnchorGaps, Alloc<> > > >; TReadGaps = Gaps >, AnchorGaps, Alloc<> > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_fstream; TSpec = void; TConfig = FragmentStoreConfig; TContigId = unsigned int; TPos = int; TNum = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:145:27: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:205:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 205 | return TProxy(it); | ^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_iterator.h:87, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:86, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign.h:44: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]' 88 | Proxy(TIterator const _it) | ~~~~~~~~~~~~~~~~^~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps >, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; typename Reference > > >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps >, AnchorGaps, Alloc<> > > >; TSpec = GapsIterator, Alloc<> > > >; typename Reference >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:1628:55: required from 'void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_fstream; TContigGaps = Gaps, Alloc<> >, AnchorGaps, Alloc<> > > >; TReadGaps = Gaps >, AnchorGaps, Alloc<> > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_fstream; TSpec = void; TConfig = FragmentStoreConfig; TContigId = unsigned int; TPos = int; TNum = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:145:27: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:205:12: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 205 | return TProxy(it); | ^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]' 88 | Proxy(TIterator const _it) | ~~~~~~~~~~~~~~~~^~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign.h:55: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h: In instantiation of 'void seqan::AnsonMyersRealignmentRound_::_subtractReadAlignment(unsigned int, unsigned int&, TProfileString&, seqan::ExtractProfileInfo_&, TAlignedReadElement, int, const seqan::WindowClippingInfo_&) [with TFragmentStore = seqan::FragmentStore<>; TProfileString = seqan::String >, seqan::Alloc<> >; TAlignedReadElement = seqan::AlignedReadStoreElement, void>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:1138:9: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:314:20: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:404:32: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 404 | for (TReadGapsIter itR2 = itR; itR2 != itREnd; ++itR2) | ^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:116:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:205:12: required from 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; typename Reference > > >::Type = Proxy, Alloc<> >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, AnchorGaps, Alloc<> > > >; TSpec = GapsIterator, Alloc<> > > >; typename Reference >::Type = Proxy, Alloc<> >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:1628:32: required from 'void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_fstream; TContigGaps = Gaps, Alloc<> >, AnchorGaps, Alloc<> > > >; TReadGaps = Gaps >, AnchorGaps, Alloc<> > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_fstream; TSpec = void; TConfig = FragmentStoreConfig; TContigId = unsigned int; TPos = int; TNum = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:145:27: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:89:15: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 89 | : data_iterator(_it) | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:205:12: required from 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps >, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; typename Reference > > >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps >, AnchorGaps, Alloc<> > > >; TSpec = GapsIterator, Alloc<> > > >; typename Reference >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:1628:55: required from 'void seqan::_printRead(TStream&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_fstream; TContigGaps = Gaps, Alloc<> >, AnchorGaps, Alloc<> > > >; TReadGaps = Gaps >, AnchorGaps, Alloc<> > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_fstream; TSpec = void; TConfig = FragmentStoreConfig; TContigId = unsigned int; TPos = int; TNum = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:145:27: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:89:15: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 89 | : data_iterator(_it) | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:116:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h: In instantiation of 'seqan::ModifiedString::ModifiedString(THost_&&, typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type*) [with THost_ = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; THost = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >; TSpec = seqan::Tag; typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type = void; typename seqan::RemoveReference::Type = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >; typename seqan::RemoveReference::Type = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_shortcuts.h:340:12: required from 'typename seqan::ReverseComplementString::Type seqan::reverseComplementString(const THost&) [with THost = Segment, Alloc<> >, InfixSegment>; typename ReverseComplementString::Type = ModifiedString, Alloc<> >, InfixSegment>, ModView > > >, Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:936:80: required from 'void seqan::setPrimaryMatch(BamAlignmentRecord&, FragmentStore&, const TAlignedRead&, const TAlignQuality&, TBamIOFunctor&, bool) [with TSpec = void; TConfig = FragmentStoreConfig; TAlignedRead = AlignedReadStoreElement, void>; TAlignQuality = AlignQualityStoreElement; TBamIOFunctor = BamAlignFunctorDefault]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:1109:20: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:1118:17: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:153:21: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:140:13: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 140 | _host(std::forward(host)), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:96: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement >; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:223:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:223: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat) [with TIndex = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSpec = void]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/overlap_info_computation.h:370:17: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/overlap_info_computation.h:334:30: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/overlap_info_computation.h:163:34: required from 'void seqan::OverlapInfoComputation_::run(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner.h:160:22: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:296:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h:518:35: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 518 | indexShape(host(pattern)) = pattern.shape; | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:87: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; TDifference = unsigned int]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:679:35: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, const Tag&) [with T = Gaps, Alloc<> >, InfixSegment>, AnchorGaps, Alloc<> > > >; TPos = unsigned int; TTag = Standard_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:395:33: required from 'void seqan::AnsonMyersRealignmentRound_::_subtractReadAlignment(unsigned int, unsigned int&, TProfileString&, seqan::ExtractProfileInfo_&, TAlignedReadElement, int, const seqan::WindowClippingInfo_&) [with TFragmentStore = seqan::FragmentStore<>; TProfileString = seqan::String >, seqan::Alloc<> >; TAlignedReadElement = seqan::AlignedReadStoreElement, void>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:1138:9: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:314:20: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 773 | Iter > > result = lhs; | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 775 | return result; | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; typename Reference > > >::Type = Proxy, Alloc<> >, InfixSegment>, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, InfixSegment>, AnchorGaps, Alloc<> > > >; TSpec = GapsIterator, Alloc<> > > >; typename Reference >::Type = Proxy, Alloc<> >, InfixSegment>, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:408:48: required from 'void seqan::AnsonMyersRealignmentRound_::_subtractReadAlignment(unsigned int, unsigned int&, TProfileString&, seqan::ExtractProfileInfo_&, TAlignedReadElement, int, const seqan::WindowClippingInfo_&) [with TFragmentStore = seqan::FragmentStore<>; TProfileString = seqan::String >, seqan::Alloc<> >; TAlignedReadElement = seqan::AlignedReadStoreElement, void>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:1138:9: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:314:20: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:205:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 205 | return TProxy(it); | ^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]' 88 | Proxy(TIterator const _it) | ~~~~~~~~~~~~~~~~^~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_iterator.h:80: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:98:7: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(const ModifiedString >&, Tag) [with THost = ModifiedString, Alloc<> >, InfixSegment>, ModView > > >; TTagSpec = Standard_; typename Iterator >, const Tag >::Type = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, ModView > > >, Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:811:66: required from 'void seqan::_fillBamSeqAndQual(TSeq&, TQual&, const TRead&) [with TSeq = String, Alloc<> >; TQual = String >; TRead = ModifiedString, Alloc<> >, InfixSegment>, ModView > > >, Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:936:31: required from 'void seqan::setPrimaryMatch(BamAlignmentRecord&, FragmentStore&, const TAlignedRead&, const TAlignQuality&, TBamIOFunctor&, bool) [with TSpec = void; TConfig = FragmentStoreConfig; TAlignedRead = AlignedReadStoreElement, void>; TAlignQuality = AlignQualityStoreElement; TBamIOFunctor = BamAlignFunctorDefault]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:1109:20: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:1118:17: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:153:21: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:223:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find.h:55, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:46: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = const Segment, Alloc<> >, InfixSegment>; TSpec = Pigeonhole<>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h:969:48: required from 'bool seqan::find(Finder >&, Pattern >&, double) [with THaystack = const Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/overlap_info_computation.h:377:20: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/overlap_info_computation.h:334:30: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/overlap_info_computation.h:163:34: required from 'void seqan::OverlapInfoComputation_::run(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner.h:160:22: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:296:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:599:38: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 599 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:105: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_builder.h:376:20: required from 'void seqan::ConsensusBuilder_::run(TFragmentStore&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner.h:170:20: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:296:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1342 | TTargetValue temp_copy(std::forward(_value)); //temp copy because resize could invalidate _value | ^~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:94: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:369:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:279:37: required from 'void seqan::AnsonMyersRealignmentRound_::_getReadAsProfile(TProfileString&, TAlignedReadElement&) [with TFragmentStore = seqan::FragmentStore<>; TProfileString = seqan::String >, seqan::Alloc<> >; TAlignedReadElement = seqan::AlignedReadStoreElement, void>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:1020:13: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:314:20: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:520:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:504:15: required from 'typename seqan::Iterator::Type>::Type seqan::end(const T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:280:33: required from 'void seqan::AnsonMyersRealignmentRound_::_getReadAsProfile(TProfileString&, TAlignedReadElement&) [with TFragmentStore = seqan::FragmentStore<>; TProfileString = seqan::String >, seqan::Alloc<> >; TAlignedReadElement = seqan::AlignedReadStoreElement, void>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:1020:13: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:314:20: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 486 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:205:12: required from 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; typename Reference > > >::Type = Proxy, Alloc<> >, InfixSegment>, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, InfixSegment>, AnchorGaps, Alloc<> > > >; TSpec = GapsIterator, Alloc<> > > >; typename Reference >::Type = Proxy, Alloc<> >, InfixSegment>, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:408:48: required from 'void seqan::AnsonMyersRealignmentRound_::_subtractReadAlignment(unsigned int, unsigned int&, TProfileString&, seqan::ExtractProfileInfo_&, TAlignedReadElement, int, const seqan::WindowClippingInfo_&) [with TFragmentStore = seqan::FragmentStore<>; TProfileString = seqan::String >, seqan::Alloc<> >; TAlignedReadElement = seqan::AlignedReadStoreElement, void>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:1138:9: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:314:20: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:89:15: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 89 | : data_iterator(_it) | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps, Alloc<> >, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; TDifference = unsigned int]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:679:35: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, const Tag&) [with T = Gaps, Alloc<> >, AnchorGaps, Alloc<> > > >; TPos = unsigned int; TTag = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:661:16: required from 'typename seqan::Iterator::Type>::Type seqan::iter(T&, TPos) [with T = Gaps, Alloc<> >, AnchorGaps, Alloc<> > > >; TPos = unsigned int; typename Iterator::Type>::Type = Iter, Alloc<> >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_anchor.h:466:20: required from 'void seqan::insertGaps(Gaps >&, TPosition, TCount) [with TSequence = String, Alloc<> >; TGapAnchors = String, Alloc<> >; TPosition = unsigned int; TCount = unsigned int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:930:19: required from 'void seqan::AnsonMyersRealigner_::_endContig(unsigned int) [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:697:5: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:314:20: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 773 | Iter > > result = lhs; | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 775 | return result; | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, InfixSegment>, ModView > > >, Tag >, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; typename Reference > > >::Type = Proxy, Alloc<> >, InfixSegment>, ModView > > >, Tag >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, InfixSegment>, ModView > > >, Tag >, AnchorGaps, Alloc<> > > >; TSpec = GapsIterator, Alloc<> > > >; typename Reference >::Type = Proxy, Alloc<> >, InfixSegment>, ModView > > >, Tag >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/cigar.h:209:39: required from 'unsigned int seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String >; TGaps1 = Gaps, Alloc<> >, AnchorGaps, Alloc<> > > >; TGaps2 = Gaps, Alloc<> >, InfixSegment>, ModView > > >, Tag >, AnchorGaps, Alloc<> > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/cigar.h:572:29: required from 'void seqan::alignAndGetCigarString(TCigar&, TMDString&, const TContig&, const TReadSeq&, TAlignedRead&, TErrors&, BamAlignFunctorDefault&) [with TCigar = String >; TMDString = String >; TContig = ContigStoreElement, Alloc<> >, GapAnchor, void>; TReadSeq = Segment, Alloc<> >, InfixSegment>; TAlignedRead = const AlignedReadStoreElement, void>; TErrors = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:905:27: required from 'void seqan::setPrimaryMatch(BamAlignmentRecord&, FragmentStore&, const TAlignedRead&, const TAlignQuality&, TBamIOFunctor&, bool) [with TSpec = void; TConfig = FragmentStoreConfig; TAlignedRead = AlignedReadStoreElement, void>; TAlignQuality = AlignQualityStoreElement; TBamIOFunctor = BamAlignFunctorDefault]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:1109:20: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:1118:17: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:153:21: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:205:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 205 | return TProxy(it); | ^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:88:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]' 88 | Proxy(TIterator const _it) | ~~~~~~~~~~~~~~~~^~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement >; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:140:13: required from 'seqan::ModifiedString::ModifiedString(THost_&&, typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type*) [with THost_ = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; THost = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >; TSpec = seqan::Tag; typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type = void; typename seqan::RemoveReference::Type = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >; typename seqan::RemoveReference::Type = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_shortcuts.h:340:12: required from 'typename seqan::ReverseComplementString::Type seqan::reverseComplementString(const THost&) [with THost = Segment, Alloc<> >, InfixSegment>; typename ReverseComplementString::Type = ModifiedString, Alloc<> >, InfixSegment>, ModView > > >, Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:936:80: required from 'void seqan::setPrimaryMatch(BamAlignmentRecord&, FragmentStore&, const TAlignedRead&, const TAlignQuality&, TBamIOFunctor&, bool) [with TSpec = void; TConfig = FragmentStoreConfig; TAlignedRead = AlignedReadStoreElement, void>; TAlignQuality = AlignQualityStoreElement; TBamIOFunctor = BamAlignFunctorDefault]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:1109:20: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:1118:17: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:153:21: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h:229:32: required from 'seqan::Finder >::Finder(THaystack&) [with THaystack = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/overlap_info_computation.h:376:23: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/overlap_info_computation.h:334:30: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/overlap_info_computation.h:163:34: required from 'void seqan::OverlapInfoComputation_::run(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner.h:160:22: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:296:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::host(Finder&) [with THaystack = const Segment, Alloc<> >, InfixSegment>; TSpec = Pigeonhole<>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h:932:36: required from 'bool seqan::_firstNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Pigeonhole<> >; TIndex = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h:975:34: required from 'bool seqan::find(Finder >&, Pattern >&, double) [with THaystack = const Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/overlap_info_computation.h:377:20: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/overlap_info_computation.h:334:30: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/overlap_info_computation.h:163:34: required from 'void seqan::OverlapInfoComputation_::run(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner.h:160:22: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:296:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:585:38: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 585 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, TIntegral) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = const SimpleType*; TSpec = Tag; TIntegral = long unsigned int]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h:941:46: required from 'bool seqan::_firstNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Pigeonhole<> >; TIndex = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h:975:34: required from 'bool seqan::find(Finder >&, Pattern >&, double) [with THaystack = const Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/overlap_info_computation.h:377:20: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/overlap_info_computation.h:334:30: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/overlap_info_computation.h:163:34: required from 'void seqan::OverlapInfoComputation_::run(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner.h:160:22: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:296:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:577:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 577 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:56: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h: In instantiation of 'void seqan::findIntervalsExcludeTouching(String&, const Graph&, const TPropertyMap&, TValue) [with TSpec = Directed >; TPropertyMap = String > > > >; TValue = long unsigned int; TCargo = Pair >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:571:49: required from 'void seqan::matchRefinement(TAlignmentString&, StringSet&, TScore&, TOutGraph&, typename Size::Type>::Type, TAnnotation&, Tag) [with TAlignmentString = String >; TAnnotation = bool; TOutGraph = Graph, Alloc<> >, InfixSegment>, Dependent > >, unsigned int, Tag > >; TSequence = Segment, Alloc<> >, InfixSegment>; TSetSpec = Dependent >; TScore = unsigned int; TTagSpec = TagExactRefinement_; typename Size::Type>::Type = long unsigned int; typename Value::Type = Fragment<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:678:20: required from 'void seqan::matchRefinement(TFragmentString&, StringSet&, TOutGraph&) [with TFragmentString = String >; TOutGraph = Graph, Alloc<> >, InfixSegment>, Dependent > >, unsigned int, Tag > >; TSequence = Segment, Alloc<> >, InfixSegment>; TSetSpec = Dependent >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_msa/graph_align_tcoffee_base.h:136:20: required from 'void seqan::buildAlignmentGraph(String&, String&, Graph >&, FractionalScore) [with TFragment = Fragment<>; TSpec1 = Alloc<>; TScoreValue = int; TSpec2 = Alloc<>; TStringSet = StringSet, Alloc<> >, InfixSegment>, Dependent > >; TCargo = unsigned int; TSpec = Tag; FractionalScore = const Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_msa/graph_align_tcoffee_base.h:272:24: required from 'void seqan::buildAlignmentGraph(String&, String&, Graph >&, const TScore&, ReScore) [with TFragment = Fragment<>; TSpec1 = Alloc<>; TScoreValue = int; TSpec2 = Alloc<>; TStringSet = StringSet, Alloc<> >, InfixSegment>, Dependent > >; TCargo = unsigned int; TSpec = Tag; TScore = Score >; ReScore = const Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_builder.h:384:24: required from 'void seqan::ConsensusBuilder_::run(TFragmentStore&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner.h:170:20: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:296:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:1667:18: warning: implicitly-declared 'seqan::IntervalTreeNode > > >& seqan::IntervalTreeNode > > >::operator=(const seqan::IntervalTreeNode > > >&)' is deprecated [-Wdeprecated-copy] 1667 | act_prop = property(pm, act_knot); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode > > >' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:1679:23: warning: implicitly-declared 'seqan::IntervalTreeNode > > >& seqan::IntervalTreeNode > > >::operator=(const seqan::IntervalTreeNode > > >&)' is deprecated [-Wdeprecated-copy] 1679 | next_prop = property(pm, targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode > > >' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:1701:27: warning: implicitly-declared 'seqan::IntervalTreeNode > > >& seqan::IntervalTreeNode > > >::operator=(const seqan::IntervalTreeNode > > >&)' is deprecated [-Wdeprecated-copy] 1701 | next_prop = property(pm, targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode > > >' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps, Alloc<> >, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; TDifference = long int]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:679:35: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, const Tag&) [with T = Gaps, Alloc<> >, AnchorGaps, Alloc<> > > >; TPos = long int; TTag = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:661:16: required from 'typename seqan::Iterator::Type>::Type seqan::iter(T&, TPos) [with T = Gaps, Alloc<> >, AnchorGaps, Alloc<> > > >; TPos = long int; typename Iterator::Type>::Type = Iter, Alloc<> >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_anchor.h:466:20: required from 'void seqan::insertGaps(Gaps >&, TPosition, TCount) [with TSequence = String, Alloc<> >; TGapAnchors = String, Alloc<> >; TPosition = long int; TCount = unsigned int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_builder.h:295:23: required from 'bool seqan::alignmentGraphToFragmentStore(TFragmentStore&, const Graph, TCargo, TSpec> >&, const Graph >&, const String >&, const String >&, unsigned int, bool) [with TFragmentStore = FragmentStore<>; TSequence = Segment, Alloc<> >, InfixSegment>; TCargo = unsigned int; TSetSpec = Dependent >; TSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_builder.h:427:34: required from 'void seqan::ConsensusBuilder_::run(TFragmentStore&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner.h:170:20: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:296:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 773 | Iter > > result = lhs; | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 775 | return result; | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:205:12: required from 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps, Alloc<> >, InfixSegment>, ModView > > >, Tag >, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; typename Reference > > >::Type = Proxy, Alloc<> >, InfixSegment>, ModView > > >, Tag >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps, Alloc<> >, InfixSegment>, ModView > > >, Tag >, AnchorGaps, Alloc<> > > >; TSpec = GapsIterator, Alloc<> > > >; typename Reference >::Type = Proxy, Alloc<> >, InfixSegment>, ModView > > >, Tag >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/cigar.h:209:39: required from 'unsigned int seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String >; TGaps1 = Gaps, Alloc<> >, AnchorGaps, Alloc<> > > >; TGaps2 = Gaps, Alloc<> >, InfixSegment>, ModView > > >, Tag >, AnchorGaps, Alloc<> > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/cigar.h:572:29: required from 'void seqan::alignAndGetCigarString(TCigar&, TMDString&, const TContig&, const TReadSeq&, TAlignedRead&, TErrors&, BamAlignFunctorDefault&) [with TCigar = String >; TMDString = String >; TContig = ContigStoreElement, Alloc<> >, GapAnchor, void>; TReadSeq = Segment, Alloc<> >, InfixSegment>; TAlignedRead = const AlignedReadStoreElement, void>; TErrors = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:905:27: required from 'void seqan::setPrimaryMatch(BamAlignmentRecord&, FragmentStore&, const TAlignedRead&, const TAlignQuality&, TBamIOFunctor&, bool) [with TSpec = void; TConfig = FragmentStoreConfig; TAlignedRead = AlignedReadStoreElement, void>; TAlignQuality = AlignQualityStoreElement; TBamIOFunctor = BamAlignFunctorDefault]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:1076:24: required from 'void seqan::writeAlignments(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:1109:20: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&, TBamIOFunctor&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig; TBamIOFunctor = BamAlignFunctorDefault]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:1118:17: required from 'void seqan::writeRecords(FormattedFile, Tag, TSpec>&, FragmentStore&) [with TSpec = void; TFSSpec = void; TFSConfig = FragmentStoreConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:153:21: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h:89:15: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 89 | : data_iterator(_it) | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/overlap_info_computation.h:352:20: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/overlap_info_computation.h:334:30: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/overlap_info_computation.h:163:34: required from 'void seqan::OverlapInfoComputation_::run(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner.h:160:22: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:296:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1342 | TTargetValue temp_copy(std::forward(_value)); //temp copy because resize could invalidate _value | ^~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_fundamental.h:82, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1348:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_builder.h:376:20: required from 'void seqan::ConsensusBuilder_::run(TFragmentStore&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner.h:170:20: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:296:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1354:27: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_builder.h:376:20: required from 'void seqan::ConsensusBuilder_::run(TFragmentStore&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner.h:170:20: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:296:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, TIntegral) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag; TIntegral = long int]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:162:56: required from 'typename seqan::Source > > >::Type seqan::source(Iter > >&) [with TGaps = const Gaps, Alloc<> >, InfixSegment>, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; typename Source > > >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:183:24: required from 'typename seqan::GetValue > > >::Type seqan::getValue(Iter > >&) [with TGaps = const Gaps, Alloc<> >, InfixSegment>, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; typename GetValue > > >::Type = ModifiedAlphabet, ModExpand<'-'> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_base.h:950:54: required from 'void seqan::write(TTarget&, const Gaps&) [with TTarget = Iter, StreamIterator > >; TSource = Segment, Alloc<> >, InfixSegment>; TSpec = AnchorGaps, Alloc<> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_base.h:965:10: required from 'TTarget& seqan::operator<<(TTarget&, const Gaps&) [with TTarget = std::basic_ostream; TSource = Segment, Alloc<> >, InfixSegment>; TSpec = AnchorGaps, Alloc<> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:363:40: required from 'void seqan::AnsonMyersRealignmentRound_::_computeReadClippingInfo(seqan::WindowClippingInfo_&, const TAlignedReadElement&, unsigned int, unsigned int) [with TFragmentStore = seqan::FragmentStore<>; TAlignedReadElement = seqan::AlignedReadStoreElement, void>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:1067:9: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:314:20: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:577:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 577 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; TDifference = int]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:679:35: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, const Tag&) [with T = Gaps, Alloc<> >, InfixSegment>, AnchorGaps, Alloc<> > > >; TPos = int; TTag = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:661:16: required from 'typename seqan::Iterator::Type>::Type seqan::iter(T&, TPos) [with T = Gaps, Alloc<> >, InfixSegment>, AnchorGaps, Alloc<> > > >; TPos = int; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_anchor.h:466:20: required from 'void seqan::insertGaps(Gaps >&, TPosition, TCount) [with TSequence = Segment, Alloc<> >, InfixSegment>; TGapAnchors = String, Alloc<> >; TPosition = int; TCount = unsigned int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_base.h:513:15: required from 'void seqan::insertGap(Gaps&, TPosition) [with TSequence = Segment, Alloc<> >, InfixSegment>; TSpec = AnchorGaps, Alloc<> > >; TPosition = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:1610:30: required from 'void seqan::AnsonMyersRealignmentRound_::_updateAlignments(unsigned int, unsigned int&, TProfileString&, seqan::Gaps::Type>::Type>::Type> > >&, seqan::Gaps::Type>&, seqan::ExtractProfileInfo_&, const seqan::WindowClippingInfo_&, const TAlignedReadIter&) [with TFragmentStore = seqan::FragmentStore<>; TProfileString = seqan::String >, seqan::Alloc<> >; typename seqan::BaseAlphabet::Type>::Type>::Type = seqan::SimpleType; typename seqan::Value::Type>::Type = seqan::SimpleType; typename seqan::Value::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename TFragmentStore::TReadSeqStore = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TAlignedReadIter = seqan::AlignedReadStoreElement, void>*]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:1321:9: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:314:20: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 773 | Iter > > result = lhs; | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 775 | return result; | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; TDifference = long int]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:679:35: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, const Tag&) [with T = Gaps, Alloc<> >, InfixSegment>, AnchorGaps, Alloc<> > > >; TPos = long int; TTag = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:661:16: required from 'typename seqan::Iterator::Type>::Type seqan::iter(T&, TPos) [with T = Gaps, Alloc<> >, InfixSegment>, AnchorGaps, Alloc<> > > >; TPos = long int; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_anchor.h:466:20: required from 'void seqan::insertGaps(Gaps >&, TPosition, TCount) [with TSequence = Segment, Alloc<> >, InfixSegment>; TGapAnchors = String, Alloc<> >; TPosition = long int; TCount = long int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2236:27: required from 'void seqan::_alignedReadsInsertGaps(TAlignedReadIter, TAlignedReadIter, TPos, TSize, TReadSeqStore&) [with TAlignedReadIter = AlignedReadStoreElement, void>*; TPos = long int; TSize = long int; TReadSeqStore = StringSet, Alloc<> >, Owner > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2321:40: required from 'void seqan::_twoWayMergeAlignments(TContigGapsGlobal&, TContigGapsPW&, TReadGaps&, TAlignedReadIter, TAlignedReadIter, TAlignedReadIter, TAlignedReadIter, TReadSeqStore&) [with TContigGapsGlobal = Gaps, AnchorGaps, Alloc<> > > >; TContigGapsPW = Gaps, AnchorGaps, Alloc<> >, InfixSegment> > >; TReadGaps = Gaps, Alloc<> >, InfixSegment>, AnchorGaps, Alloc<> > > >; TAlignedReadIter = AlignedReadStoreElement, void>*; TReadSeqStore = StringSet, Alloc<> >, Owner > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2437:31: required from 'void seqan::convertPairWiseToGlobalAlignment(FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigGapsString = StringSet, Alloc<> >, Owner > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(FragmentStore&, BamIOContext&, TForwardIter&, const TFormat&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&, const FragStoreImportFlags&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:261:20: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 773 | Iter > > result = lhs; | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 775 | return result; | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h:229:32: required from 'seqan::Finder >::Finder(THaystack&) [with THaystack = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/overlap_info_computation.h:376:23: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/overlap_info_computation.h:334:30: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/overlap_info_computation.h:163:34: required from 'void seqan::OverlapInfoComputation_::run(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner.h:160:22: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:296:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:385:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:162:17: required from 'typename seqan::Source > > >::Type seqan::source(Iter > >&) [with TGaps = const Gaps, Alloc<> >, InfixSegment>, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; typename Source > > >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:183:24: required from 'typename seqan::GetValue > > >::Type seqan::getValue(Iter > >&) [with TGaps = const Gaps, Alloc<> >, InfixSegment>, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; typename GetValue > > >::Type = ModifiedAlphabet, ModExpand<'-'> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_base.h:950:54: required from 'void seqan::write(TTarget&, const Gaps&) [with TTarget = Iter, StreamIterator > >; TSource = Segment, Alloc<> >, InfixSegment>; TSpec = AnchorGaps, Alloc<> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_base.h:965:10: required from 'TTarget& seqan::operator<<(TTarget&, const Gaps&) [with TTarget = std::basic_ostream; TSource = Segment, Alloc<> >, InfixSegment>; TSpec = AnchorGaps, Alloc<> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:363:40: required from 'void seqan::AnsonMyersRealignmentRound_::_computeReadClippingInfo(seqan::WindowClippingInfo_&, const TAlignedReadElement&, unsigned int, unsigned int) [with TFragmentStore = seqan::FragmentStore<>; TAlignedReadElement = seqan::AlignedReadStoreElement, void>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:1067:9: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:314:20: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:343:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 343 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>; TValue2 = const Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:887:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Segment, Alloc<> >, InfixSegment>; TSource = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:135:20: required from 'seqan::Holder >::Holder(const THostValue&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THostValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_anchor.h:165:9: required from 'seqan::Gaps >::Gaps(const TGapAnchors&) [with TSource = seqan::Tag; TGapAnchors = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2393:29: required from 'void seqan::convertPairWiseToGlobalAlignment(FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigGapsString = StringSet, Alloc<> >, Owner > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(FragmentStore&, BamIOContext&, TForwardIter&, const TFormat&, const FragStoreImportFlags&) [with TSpec = void; TConfig = FragmentStoreConfig; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > > >; TStorageSpec = Dependent >; TForwardIter = Iter >, StreamIterator > >; TFormat = TagSelector, TagList > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&, const FragStoreImportFlags&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(FragmentStore&, FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = FragmentStoreConfig; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:261:20: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1348:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/overlap_info_computation.h:352:20: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/overlap_info_computation.h:334:30: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/overlap_info_computation.h:163:34: required from 'void seqan::OverlapInfoComputation_::run(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner.h:160:22: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:296:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1354:27: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/overlap_info_computation.h:352:20: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/overlap_info_computation.h:334:30: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/overlap_info_computation.h:163:34: required from 'void seqan::OverlapInfoComputation_::run(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner.h:160:22: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:296:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_fundamental.h:72: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; TSource = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; typename DisableIf > >::Type = void]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; TValue2 = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; typename Reference > >::Type = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:339:17: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Pigeonhole<>; typename Host >::Type = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h:463:41: required from 'void seqan::_patternInit(Pattern >&, TFloat) [with TIndex = Index, Alloc<> >, InfixSegment>, Dependent > >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/overlap_info_computation.h:370:17: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/overlap_info_computation.h:334:30: required from 'void seqan::OverlapInfoComputation_::buildAllToAllOverlapInfos(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/overlap_info_computation.h:163:34: required from 'void seqan::OverlapInfoComputation_::run(std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner.h:160:22: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:296:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 110 | target = source; | ~~~~~~~^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:92: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = const seqan::StringSet, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Dependent > >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>]' 143 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:86:11: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 86 | class Index > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Dependent > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' first required here 110 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = const SimpleType*; TSpec = Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:624:58: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:99:44: required from 'TScoreValue seqan::globalAlignment(Align&, const Score&, const AlignConfig&, int, int, const TAlgoTag&) [with TSequence = Segment, Alloc<> >, InfixSegment>; TAlignSpec = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = true; bool LEFT = true; bool RIGHT = true; bool BOTTOM = true; TACSpec = Tag; TAlgoTag = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/overlapper.h:354:24: required from 'bool seqan::Overlapper_::computeOverlap(seqan::Overlap_&, TFragments&, const TSequence&, const TSequence&, const seqan::OverlapCandidate_&) const [with TFragments = seqan::String >; TSequence = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_builder.h:138:38: required from 'void seqan::ConsensusBuilder_::computeOverlaps(TFragments&, seqan::String&, seqan::Graph >&, const TFragmentStore&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>; TFragments = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_builder.h:370:5: required from 'void seqan::ConsensusBuilder_::run(TFragmentStore&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner.h:170:20: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:296:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = const SimpleType*; TSpec = Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:631:62: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:99:44: required from 'TScoreValue seqan::globalAlignment(Align&, const Score&, const AlignConfig&, int, int, const TAlgoTag&) [with TSequence = Segment, Alloc<> >, InfixSegment>; TAlignSpec = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = true; bool LEFT = true; bool RIGHT = true; bool BOTTOM = true; TACSpec = Tag; TAlgoTag = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/overlapper.h:354:24: required from 'bool seqan::Overlapper_::computeOverlap(seqan::Overlap_&, TFragments&, const TSequence&, const TSequence&, const seqan::OverlapCandidate_&) const [with TFragments = seqan::String >; TSequence = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_builder.h:138:38: required from 'void seqan::ConsensusBuilder_::computeOverlaps(TFragments&, seqan::String&, seqan::Graph >&, const TFragmentStore&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>; TFragments = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_builder.h:370:5: required from 'void seqan::ConsensusBuilder_::run(TFragmentStore&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner.h:170:20: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:296:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:586:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 586 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, TIntegral) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = const SimpleType*; TSpec = Tag; TIntegral = long int]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:634:69: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:99:44: required from 'TScoreValue seqan::globalAlignment(Align&, const Score&, const AlignConfig&, int, int, const TAlgoTag&) [with TSequence = Segment, Alloc<> >, InfixSegment>; TAlignSpec = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = true; bool LEFT = true; bool RIGHT = true; bool BOTTOM = true; TACSpec = Tag; TAlgoTag = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/overlapper.h:354:24: required from 'bool seqan::Overlapper_::computeOverlap(seqan::Overlap_&, TFragments&, const TSequence&, const TSequence&, const seqan::OverlapCandidate_&) const [with TFragments = seqan::String >; TSequence = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_builder.h:138:38: required from 'void seqan::ConsensusBuilder_::computeOverlaps(TFragments&, seqan::String&, seqan::Graph >&, const TFragmentStore&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>; TFragments = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_builder.h:370:5: required from 'void seqan::ConsensusBuilder_::run(TFragmentStore&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner.h:170:20: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:296:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:577:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 577 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:744:24: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:99:44: required from 'TScoreValue seqan::globalAlignment(Align&, const Score&, const AlignConfig&, int, int, const TAlgoTag&) [with TSequence = Segment, Alloc<> >, InfixSegment>; TAlignSpec = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = true; bool LEFT = true; bool RIGHT = true; bool BOTTOM = true; TACSpec = Tag; TAlgoTag = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/overlapper.h:354:24: required from 'bool seqan::Overlapper_::computeOverlap(seqan::Overlap_&, TFragments&, const TSequence&, const TSequence&, const seqan::OverlapCandidate_&) const [with TFragments = seqan::String >; TSequence = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_builder.h:138:38: required from 'void seqan::ConsensusBuilder_::computeOverlaps(TFragments&, seqan::String&, seqan::Graph >&, const TFragmentStore&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>; TFragments = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_builder.h:370:5: required from 'void seqan::ConsensusBuilder_::run(TFragmentStore&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner.h:170:20: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:296:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:520:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:650:29: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/overlapper.h:354:24: required from 'bool seqan::Overlapper_::computeOverlap(seqan::Overlap_&, TFragments&, const TSequence&, const TSequence&, const seqan::OverlapCandidate_&) const [with TFragments = seqan::String >; TSequence = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_builder.h:138:38: required from 'void seqan::ConsensusBuilder_::computeOverlaps(TFragments&, seqan::String&, seqan::Graph >&, const TFragmentStore&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>; TFragments = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_builder.h:370:5: required from 'void seqan::ConsensusBuilder_::run(TFragmentStore&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner.h:170:20: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(FragmentStore&, const ConsensusAlignmentOptions&) [with TSpec = void; TConfig = FragmentStoreConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:296:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 486 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:382:27: required from 'void seqan::_computeTrack(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSeqHValue&, const TSeqVValue&, const TSeqVIterator&, const TSeqVIterator&, const TScoringScheme&, TDPCell&, TDPCell&, const TColumnDescriptor&, const TDPProfile&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSeqHValue = ConsensusScoreSequenceEntry >, Alloc<> > >; TSeqVValue = ConsensusScoreSequenceEntry, Alloc<> >, InfixSegment> >; TSeqVIterator = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; TScoringScheme = Score >, Score > > >; TDPCell = DPCell_ >; TColumnDescriptor = MetaColumnDescriptor, Tag >; TDPProfile = DPProfile_ >, Tag, TracebackOn, Tag > >, Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:453:18: required from 'void seqan::_computeTrack(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSeqHValue&, const TSeqVValue&, const TSeqVIterator&, const TSeqVIterator&, const TScoringScheme&, const TColumnDescriptor&, const TDPProfile&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSeqHValue = ConsensusScoreSequenceEntry >, Alloc<> > >; TSeqVValue = ConsensusScoreSequenceEntry, Alloc<> >, InfixSegment> >; TSeqVIterator = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; TScoringScheme = Score >, Score > > >; TColumnDescriptor = MetaColumnDescriptor, Tag >; TDPProfile = DPProfile_ >, Tag, TracebackOn, Tag > >, Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:515:18: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = String >, Alloc<> >; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >, Score > > >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = String >, Alloc<> >; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >, Score > > >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = String >, Alloc<> >; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = WeightedConsensusScore >, Score > >; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:639:20: required from 'void seqan::_readToProfileAlignment(TProfileGaps&, TReadGaps&, const TConsensusScore&, const TAlignConfig&, int&, int&, const TAlgoTag&) [with TProfileGaps = Gaps >, Alloc<> >, Tag >; TReadGaps = Gaps, Alloc<> >, InfixSegment>, Tag >; TConsensusScore = Score >, Score > > >; TAlignConfig = AlignConfig; TAlgoTag = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:657:36: required from 'void seqan::_readToProfileAlignment(TProfileGaps&, TReadGaps&, const TConsensusScore&, const TAlignConfig&, int&, int&, bool) [with TProfileGaps = Gaps >, Alloc<> >, Tag >; TReadGaps = Gaps, Alloc<> >, InfixSegment>, Tag >; TConsensusScore = Score >, Score > > >; TAlignConfig = AlignConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:1209:36: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = FragmentStoreConfig]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp:314:20: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned short': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned short const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned int': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)int', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int &' to 'seqan::BadLexicalCast::BadLexicalCast(int const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)unsigned int', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast(unsigned int const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)short', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, char*>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int &' to 'seqan::BadLexicalCast::BadLexicalCast(short const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)unsigned short', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, char*>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast(unsigned short const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, char*>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char &' to 'seqan::BadLexicalCast::BadLexicalCast(char const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)unsigned char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, unsigned char, seqan::TagList >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, char*>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char &' to 'seqan::BadLexicalCast::BadLexicalCast(unsigned char const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)signed char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(signed char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(signed char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, signed char>(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'seqan::tagApply >, char*>, unsigned char, seqan::TagList >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char &' to 'seqan::BadLexicalCast::BadLexicalCast(signed char const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)int', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, seqan::String >&>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)short', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, seqan::String >&>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, seqan::String >&>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(short const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, seqan::String >&>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char &' to 'seqan::BadLexicalCast::BadLexicalCast > >(char const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(unsigned char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(unsigned char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned char, seqan::TagList >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, seqan::String >&>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned char const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)signed char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(signed char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(signed char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, seqan::String >&>, signed char>(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned char, seqan::TagList >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char &' to 'seqan::BadLexicalCast::BadLexicalCast > >(signed char const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned short', inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:277:40, inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent >, seqan::TagList, void> >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::TagSelector, void> > const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:231:19, inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent >, seqan::TagList, seqan::TagList, void> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::TagSelector, seqan::TagList, void> > > const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:233:19, inlined from 'seqan::_readOneAlignment, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::String, seqan::Alloc >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent >, seqan::Iter, std::char_traits >, seqan::StreamIterator > >, seqan::TagSelector, seqan::TagList, void> > > >(seqan::FragmentStore >&, seqan::StringSet, seqan::Alloc >, seqan::Owner > >&, seqan::String, seqan::Alloc >&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::TagSelector, seqan::TagList, void> > > const&, seqan::FragStoreSAMContext > >&, seqan::FragStoreImportFlags const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:573:15: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_readOneAlignment, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::String, seqan::Alloc >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent >, seqan::Iter, std::char_traits >, seqan::StreamIterator > >, seqan::TagSelector, seqan::TagList, void> > > >(seqan::FragmentStore >&, seqan::StringSet, seqan::Alloc >, seqan::Owner > >&, seqan::String, seqan::Alloc >&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::TagSelector, seqan::TagList, void> > > const&, seqan::FragStoreSAMContext > >&, seqan::FragStoreImportFlags const&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned short const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned int', inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:320:50, inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent >, seqan::TagList, void> >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::TagSelector, void> > const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:231:19, inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent >, seqan::TagList, seqan::TagList, void> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::TagSelector, seqan::TagList, void> > > const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:233:19, inlined from 'seqan::_readOneAlignment, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::String, seqan::Alloc >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent >, seqan::Iter, std::char_traits >, seqan::StreamIterator > >, seqan::TagSelector, seqan::TagList, void> > > >(seqan::FragmentStore >&, seqan::StringSet, seqan::Alloc >, seqan::Owner > >&, seqan::String, seqan::Alloc >&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::TagSelector, seqan::TagList, void> > > const&, seqan::FragStoreSAMContext > >&, seqan::FragStoreImportFlags const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:573:15: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_readOneAlignment, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::String, seqan::Alloc >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent >, seqan::Iter, std::char_traits >, seqan::StreamIterator > >, seqan::TagSelector, seqan::TagList, void> > > >(seqan::FragmentStore >&, seqan::StringSet, seqan::Alloc >, seqan::Owner > >&, seqan::String, seqan::Alloc >&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::TagSelector, seqan::TagList, void> > > const&, seqan::FragStoreSAMContext > >&, seqan::FragStoreImportFlags const&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)int', inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:363:43, inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent >, seqan::TagList, void> >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::TagSelector, void> > const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:231:19, inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent >, seqan::TagList, seqan::TagList, void> > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::TagSelector, seqan::TagList, void> > > const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:233:19, inlined from 'seqan::_readOneAlignment, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::String, seqan::Alloc >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent >, seqan::Iter, std::char_traits >, seqan::StreamIterator > >, seqan::TagSelector, seqan::TagList, void> > > >(seqan::FragmentStore >&, seqan::StringSet, seqan::Alloc >, seqan::Owner > >&, seqan::String, seqan::Alloc >&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::TagSelector, seqan::TagList, void> > > const&, seqan::FragStoreSAMContext > >&, seqan::FragStoreImportFlags const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h:573:15: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_readOneAlignment, seqan::StringSet, seqan::Alloc >, seqan::Owner > >, seqan::String, seqan::Alloc >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent >, seqan::Iter, std::char_traits >, seqan::StreamIterator > >, seqan::TagSelector, seqan::TagList, void> > > >(seqan::FragmentStore >&, seqan::StringSet, seqan::Alloc >, seqan::Owner > >&, seqan::String, seqan::Alloc >&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::TagSelector, seqan::TagList, void> > > const&, seqan::FragStoreSAMContext > >&, seqan::FragStoreImportFlags const&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ [ 89%] Building CXX object apps/seqcons2/CMakeFiles/seqcons2.dir/seqcons_options.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/seqcons2 && /usr/bin/g++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/seqcons2/CMakeFiles/seqcons2.dir/seqcons_options.cpp.o -MF CMakeFiles/seqcons2.dir/seqcons_options.cpp.o.d -o CMakeFiles/seqcons2.dir/seqcons_options.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_options.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse.h:46, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_options.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_options.cpp:35: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_options.h:39: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 89%] Linking CXX executable ../../bin/seqcons2 cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/seqcons2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/seqcons2.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/seqcons2.dir/seqcons.cpp.o CMakeFiles/seqcons2.dir/seqcons_app.cpp.o CMakeFiles/seqcons2.dir/seqcons_options.cpp.o -o ../../bin/seqcons2 -lrt -lz In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'obtainId' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_idmanager.h:166:15: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function 'obtainId': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'obtainId' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_idmanager.h:166:15, inlined from 'addVertex' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:525:36, inlined from 'convertAlignment.constprop.isra' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align/graph_impl_align.h:1519:52: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function 'convertAlignment.constprop.isra': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from '_toText' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function '_toText': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'obtainId' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_idmanager.h:166:15, inlined from 'addVertex' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_undirected.h:357:36, inlined from '_createVertices' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_interface.h:704:67, inlined from '_copyGraph.constprop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_undirected.h:164:32: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function '_copyGraph.constprop': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'obtainId' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_idmanager.h:166:15, inlined from 'addEdge' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_undirected.h:402:22, inlined from '_copyGraph.constprop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_undirected.h:167:44: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function '_copyGraph.constprop': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'obtainId' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_idmanager.h:166:15, inlined from 'addEdge' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_undirected.h:402:22, inlined from 'addEdge' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_undirected.h:424:32, inlined from 'addEdge' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align/graph_impl_align.h:593:19, inlined from 'tripletLibraryExtension' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_msa/graph_align_tcoffee_base.h:385:16: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function 'tripletLibraryExtension': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'obtainId' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_idmanager.h:166:15, inlined from 'addVertex' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_undirected.h:357:36, inlined from '_resizeWithRespectToDistance' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_msa/graph_align_tcoffee_library.h:871:41, inlined from 'run' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_builder.h:367:33: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'run': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'obtainId' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_idmanager.h:166:15, inlined from 'addVertex' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:525:36, inlined from 'heaviestIncreasingSubsequence' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_lis_his.h:423:18, inlined from 'heaviestCommonSubsequence' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align/graph_impl_align.h:2038:58, inlined from 'progressiveAlignment' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_msa/graph_align_tcoffee_progressive.h:172:38: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function 'progressiveAlignment': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'obtainId' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_idmanager.h:166:15, inlined from 'addEdge' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_undirected.h:402:22, inlined from 'addEdge' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align/graph_impl_align.h:581:19, inlined from '_createAlignmentGraph' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_msa/graph_align_tcoffee_progressive.h:106:24, inlined from 'progressiveAlignment' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_msa/graph_align_tcoffee_progressive.h:179:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function 'progressiveAlignment': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 89%] Built target seqcons2 make -f apps/sgip/CMakeFiles/sgip.dir/build.make apps/sgip/CMakeFiles/sgip.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sgip /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/sgip /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/sgip/CMakeFiles/sgip.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/sgip/CMakeFiles/sgip.dir/build.make apps/sgip/CMakeFiles/sgip.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 90%] Building CXX object apps/sgip/CMakeFiles/sgip.dir/sgip.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/sgip && /usr/bin/g++ -DSEQAN_APP_VERSION=\"1.4.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/sgip/CMakeFiles/sgip.dir/sgip.cpp.o -MF CMakeFiles/sgip.dir/sgip.cpp.o.d -o CMakeFiles/sgip.dir/sgip.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sgip/sgip.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types.h:43, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sgip/sgip.cpp:29: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/debug_test_system.h:150, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sgip/sgip.cpp:27: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sgip/sgip_base.h:33, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sgip/sgip.cpp:33: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 90%] Linking CXX executable ../../bin/sgip cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/sgip && /usr/bin/cmake -E cmake_link_script CMakeFiles/sgip.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/sgip.dir/sgip.cpp.o -o ../../bin/sgip -lrt In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'obtainId' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_idmanager.h:166:15, inlined from 'addVertex' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_undirected.h:357:36, inlined from '_createVertices' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_interface.h:704:67, inlined from 'addEdges' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_interface.h:735:43, inlined from '_createUndir' at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sgip/sgip_base.h:358:13: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function '_createUndir': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'obtainId' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_idmanager.h:166:15, inlined from 'addVertex' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_undirected.h:357:36, inlined from '_createVertices' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_interface.h:704:67, inlined from 'addEdges' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_interface.h:736:29, inlined from '_createUndir' at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sgip/sgip_base.h:358:13: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function '_createUndir': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'obtainId' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_idmanager.h:166:15, inlined from 'addEdge' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_undirected.h:402:22, inlined from 'addEdges' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_interface.h:740:16, inlined from '_createUndir' at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sgip/sgip_base.h:358:13: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function '_createUndir': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from '_toHtml' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/tool_doc.h:285:34: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551568' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function '_toHtml': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'obtainId' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_idmanager.h:166:15, inlined from 'addVertex' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:525:36, inlined from '_createVertices' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_interface.h:704:67, inlined from 'addEdges' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_interface.h:735:43, inlined from '_createGraph.isra' at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sgip/sgip.h:99:13: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function '_createGraph.isra': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'obtainId' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_idmanager.h:166:15, inlined from 'addVertex' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:525:36, inlined from '_createVertices' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_interface.h:704:67, inlined from 'addEdges' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_interface.h:736:29, inlined from '_createGraph.isra' at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sgip/sgip.h:99:13: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function '_createGraph.isra': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'obtainId' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_idmanager.h:166:15, inlined from 'addEdge' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:604:22, inlined from 'addEdges' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_interface.h:740:16, inlined from '_createGraph.isra' at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sgip/sgip.h:99:13: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function '_createGraph.isra': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from '_toText' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function '_toText': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 90%] Built target sgip make -f apps/snp_store/CMakeFiles/snp_store.dir/build.make apps/snp_store/CMakeFiles/snp_store.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/snp_store /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/snp_store/CMakeFiles/snp_store.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/snp_store/CMakeFiles/snp_store.dir/build.make apps/snp_store/CMakeFiles/snp_store.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 92%] Building CXX object apps/snp_store/CMakeFiles/snp_store.dir/snp_store.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/snp_store && /usr/bin/g++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/snp_store/CMakeFiles/snp_store.dir/snp_store.cpp.o -MF CMakeFiles/snp_store.dir/snp_store.cpp.o.d -o CMakeFiles/snp_store.dir/snp_store.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.cpp:32: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_tree.h:65, from /usr/include/c++/13/map:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:58, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.cpp:31: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.cpp:33: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.cpp:34: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_msa.h:44, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.cpp:35: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_msa/graph_align_tcoffee_base.h:304:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 304 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus.h:59: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_library.h:88:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 88 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_library.h:99:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::unary_function >, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:42, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus/overlap_info_computation.h:38, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/consensus.h:65: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:47: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:76: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:91: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:102: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:107: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:110: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:111: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:114: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:121: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:125: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:131: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:188: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.cpp:53: /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.h:356:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 356 | public ::std::binary_function < typename Value::Type, typename Value::Type, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.h:405:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 405 | struct LessPosLen : public ::std::binary_function < TPosLen, TPosLen, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.h:420:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 420 | public ::std::binary_function < typename Value::Type, typename Value::Type, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.h:468:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 468 | struct LessId : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.h:481:37: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 481 | struct LessGPos : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.h:504:40: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 504 | struct LessGPosEnd : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.h:523:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 523 | struct LessGPosEndOa : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.h:545:36: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 545 | struct HigherQ : public ::std::binary_function < TQual, TQual, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_aggregate.h:54, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:98, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:74: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/pair_base.h: In instantiation of 'seqan::Pair::Pair(const T1&, const T2&) [with T1 = unsigned int; T2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.h:5148:46: required from 'void seqan::dumpShortIndelPolymorphismsBatch(TFragmentStore&, TReadCigars&, TGenome&, TGenomeName, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TFile&, TOptions&) [with TFragmentStore = FragmentStore; TReadCigars = StringSet > >; TGenome = String, Alloc<> >; TGenomeName = String >; TFile = std::basic_ofstream; TOptions = SNPCallingOptions<>; typename TFragmentStore::TContigPos = long int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.cpp:971:74: required from 'int detectSNPs(seqan::SNPCallingOptions&) [with TSpec = seqan::SNPCallingSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.cpp:1412:28: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/pair_base.h:120:53: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 120 | Pair(T1 const & _i1, T2 const & _i2) : i1(_i1), i2(_i2) {} | ^~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:96: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score.h:43, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align.h:45: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.cpp:77:18: required from 'bool loadGenomes(TGenomeSet&, seqan::StringSet > >&, std::map >, TGenomeSetSize>&, TGenomeNames&) [with TGenomeSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TGenomeSetSize = long unsigned int; TGenomeNames = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.cpp:670:56: required from 'int detectSNPs(seqan::SNPCallingOptions&) [with TSpec = seqan::SNPCallingSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.cpp:1412:28: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:90: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps, Alloc<> >, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; TDifference = long int]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:679:35: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, const Tag&) [with T = Gaps, Alloc<> >, AnchorGaps, Alloc<> > > >; TPos = long int; TTag = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:661:16: required from 'typename seqan::Iterator::Type>::Type seqan::iter(T&, TPos) [with T = Gaps, Alloc<> >, AnchorGaps, Alloc<> > > >; TPos = long int; typename Iterator::Type>::Type = Iter, Alloc<> >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.h:4057:36: required from 'void seqan::dumpVariantsRealignBatch(TFragmentStore&, TReadCigars&, const TReadCounts&, TGenomeName, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TFile&, TFile&, TOptions&) [with TFragmentStore = FragmentStore; TReadCounts = String >; TReadCigars = StringSet > >; TGenomeName = String >; TFile = std::basic_ofstream; TOptions = SNPCallingOptions<>; typename TFragmentStore::TContigPos = long int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.h:2477:41: required from 'void seqan::dumpVariantsRealignBatchWrap(TFragmentStore&, TReadCigars&, const TReadCounts&, TGenomeName, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TFile&, TFile&, TOptions&) [with TFragmentStore = FragmentStore; TReadCigars = StringSet > >; TReadCounts = String >; TGenomeName = String >; TFile = std::basic_ofstream; TOptions = SNPCallingOptions<>; typename TFragmentStore::TContigPos = long int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.cpp:986:53: required from 'int detectSNPs(seqan::SNPCallingOptions&) [with TSpec = seqan::SNPCallingSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.cpp:1412:28: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 773 | Iter > > result = lhs; | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 775 | return result; | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.cpp:77:18: required from 'bool loadGenomes(TGenomeSet&, seqan::StringSet > >&, std::map >, TGenomeSetSize>&, TGenomeNames&) [with TGenomeSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TGenomeSetSize = long unsigned int; TGenomeNames = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.cpp:670:56: required from 'int detectSNPs(seqan::SNPCallingOptions&) [with TSpec = seqan::SNPCallingSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.cpp:1412:28: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = const Gaps, Alloc<> >, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; TDifference = long int]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:689:35: required from 'typename seqan::Iterator >::Type seqan::iter(const T&, TPos, const Tag&) [with T = Gaps, Alloc<> >, AnchorGaps, Alloc<> > > >; TPos = long int; TTag = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:669:16: required from 'typename seqan::Iterator::Type>::Type seqan::iter(const T&, TPos) [with T = Gaps, Alloc<> >, AnchorGaps, Alloc<> > > >; TPos = long int; typename Iterator::Type>::Type = Iter, Alloc<> >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_anchor.h:451:22: required from 'bool seqan::isGap(const Gaps >&, TPosition) [with TSequence = String, Alloc<> >; TGapAnchors = String, Alloc<> >; TPosition = long int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.h:4418:72: required from 'void seqan::dumpVariantsRealignBatch(TFragmentStore&, TReadCigars&, const TReadCounts&, TGenomeName, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TFile&, TFile&, TOptions&) [with TFragmentStore = FragmentStore; TReadCounts = String >; TReadCigars = StringSet > >; TGenomeName = String >; TFile = std::basic_ofstream; TOptions = SNPCallingOptions<>; typename TFragmentStore::TContigPos = long int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.h:2477:41: required from 'void seqan::dumpVariantsRealignBatchWrap(TFragmentStore&, TReadCigars&, const TReadCounts&, TGenomeName, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TFile&, TFile&, TOptions&) [with TFragmentStore = FragmentStore; TReadCigars = StringSet > >; TReadCounts = String >; TGenomeName = String >; TFile = std::basic_ofstream; TOptions = SNPCallingOptions<>; typename TFragmentStore::TContigPos = long int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.cpp:986:53: required from 'int detectSNPs(seqan::SNPCallingOptions&) [with TSpec = seqan::SNPCallingSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.cpp:1412:28: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 773 | Iter > > result = lhs; | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = const seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 775 | return result; | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = const seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.cpp:77:18: required from 'bool loadGenomes(TGenomeSet&, seqan::StringSet > >&, std::map >, TGenomeSetSize>&, TGenomeNames&) [with TGenomeSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TGenomeSetSize = long unsigned int; TGenomeNames = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.cpp:670:56: required from 'int detectSNPs(seqan::SNPCallingOptions&) [with TSpec = seqan::SNPCallingSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.cpp:1412:28: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.cpp:77:18: required from 'bool loadGenomes(TGenomeSet&, seqan::StringSet > >&, std::map >, TGenomeSetSize>&, TGenomeNames&) [with TGenomeSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TGenomeSetSize = long unsigned int; TGenomeNames = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.cpp:670:56: required from 'int detectSNPs(seqan::SNPCallingOptions&) [with TSpec = seqan::SNPCallingSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.cpp:1412:28: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.cpp:77:18: required from 'bool loadGenomes(TGenomeSet&, seqan::StringSet > >&, std::map >, TGenomeSetSize>&, TGenomeNames&) [with TGenomeSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TGenomeSetSize = long unsigned int; TGenomeNames = seqan::StringSet > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.cpp:670:56: required from 'int detectSNPs(seqan::SNPCallingOptions&) [with TSpec = seqan::SNPCallingSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store/snp_store.cpp:1412:28: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned int': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned short': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned short const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)int', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int &' to 'seqan::BadLexicalCast::BadLexicalCast(int const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)unsigned int', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast(unsigned int const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)short', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, char*>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int &' to 'seqan::BadLexicalCast::BadLexicalCast(short const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)unsigned short', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, char*>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast(unsigned short const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, char*>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char &' to 'seqan::BadLexicalCast::BadLexicalCast(char const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)unsigned char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, unsigned char, seqan::TagList >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, char*>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char &' to 'seqan::BadLexicalCast::BadLexicalCast(unsigned char const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)signed char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(signed char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(signed char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, signed char>(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'seqan::tagApply >, char*>, unsigned char, seqan::TagList >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char &' to 'seqan::BadLexicalCast::BadLexicalCast(signed char const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)int', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, seqan::String >&>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)short', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, seqan::String >&>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, seqan::String >&>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(short const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, seqan::String >&>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char &' to 'seqan::BadLexicalCast::BadLexicalCast > >(char const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(unsigned char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(unsigned char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned char, seqan::TagList >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, seqan::String >&>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned char const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)signed char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(signed char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(signed char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, seqan::String >&>, signed char>(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned char, seqan::TagList >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char &' to 'seqan::BadLexicalCast::BadLexicalCast > >(signed char const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned short', inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void [clone .isra.0]' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:277:40: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void [clone .isra.0]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned short const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned short', inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void [clone .isra.0]' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:306:44: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void [clone .isra.0]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned short const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned int', inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void [clone .isra.0]' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:320:50: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void [clone .isra.0]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)int', inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void [clone .isra.0]' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:363:43: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void [clone .isra.0]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ [ 92%] Linking CXX executable ../../bin/snp_store cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/snp_store && /usr/bin/cmake -E cmake_link_script CMakeFiles/snp_store.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/snp_store.dir/snp_store.cpp.o -o ../../bin/snp_store -lrt -lz In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'obtainId' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_idmanager.h:166:15, inlined from 'addVertex' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:525:36, inlined from '_createVertices' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_interface.h:704:67, inlined from '_copyGraph' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:274:32, inlined from '_copyGraph' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:300:15, inlined from '__ct ' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:87:23, inlined from '__ct_base ' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:358:7: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function '__ct_base ': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'obtainId' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_idmanager.h:166:15, inlined from 'addVertex' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:525:36, inlined from '_createVertices' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_interface.h:704:67, inlined from '_copyGraph' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:276:32, inlined from '_copyGraph' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:300:15, inlined from '__ct ' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_directed.h:87:23, inlined from '__ct_base ' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/interval_tree.h:358:7: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function '__ct_base ': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from '_toText' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function '_toText': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 92%] Built target snp_store make -f apps/splazers/CMakeFiles/splazers.dir/build.make apps/splazers/CMakeFiles/splazers.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/splazers /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/splazers/CMakeFiles/splazers.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/splazers/CMakeFiles/splazers.dir/build.make apps/splazers/CMakeFiles/splazers.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 92%] Building CXX object apps/splazers/CMakeFiles/splazers.dir/splazers.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/splazers && /usr/bin/g++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/splazers/CMakeFiles/splazers.dir/splazers.cpp.o -MF CMakeFiles/splazers.dir/splazers.cpp.o.d -o CMakeFiles/splazers.dir/splazers.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse.h:46, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:49: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/debug_test_system.h:150, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse.h:44: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find.h:47, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:28, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:50: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:29: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:50, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/bam_sam.h:39, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:55: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:42, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:47: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:76: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:91: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:102: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:107: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:110: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:111: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:114: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:121: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:125: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:131: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:188: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:676:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 676 | struct LessRNoGPos : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:704:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 704 | struct LessRNoGEndPos : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:730:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 730 | struct LessErrors : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:748:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 748 | struct LessSplicedScore : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:770:45: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 770 | struct LessSplicedScoreGPos : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:51: /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/outputFormat.h:126:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 126 | struct LessGPosRNo : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:59: /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:513:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 513 | struct LessPairErrors : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:604:11: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:58: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h: In instantiation of 'seqan::ModifiedString::ModifiedString(THost_&&, typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type*) [with THost_ = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; THost = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >; TSpec = seqan::Tag; typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type = void; typename seqan::RemoveReference::Type = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >; typename seqan::RemoveReference::Type = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_shortcuts.h:340:12: required from 'typename seqan::ReverseComplementString::Type seqan::reverseComplementString(const THost&) [with THost = Segment, Alloc<> >, InfixSegment>; typename ReverseComplementString::Type = ModifiedString, Alloc<> >, InfixSegment>, ModView > > >, Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/outputFormat.h:1591:40: required from 'void seqan::dumpMatches(TMatches&, const TGenomeNames&, StringSet > >&, std::map, unsigned int> >&, const TReads&, const TReadRegions&, TCounts&, const TReadNames&, CharString, CharString, RazerSOptions&) [with TMatches = String >; TGenomeNames = StringSet > >; TReads = StringSet, Alloc<> >, Owner > >; TReadRegions = String > > >; TReadNames = StringSet > >; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:281:14: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:140:13: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 140 | _host(std::forward(host)), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:96: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement >; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:604:11: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:210:11: required from 'bool seqan::loadReadsSam(TReadSet&, TNameSet&, TReadRegions&, const char*, TRazerSOptions&) [with TReadSet = StringSet, Alloc<> >, Owner > >; TNameSet = StringSet > >; TReadRegions = String > > >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:190:21: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:604:11: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:604:11: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h: In instantiation of 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal, TSufPrefSpec) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet, Alloc<> >, Owner > >; TMyersPatterns = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec<>; TSufPrefSpec = LongestSuffix; SwiftSemiGlobal = Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2543:21: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TOriReadSet = StringSet, Alloc<> >, Owner > >; TReadIndexL = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2237:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, UngappedShape<0> >; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:3072:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2169:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:666:22: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 666 | TGenomeInfix oriInf = inf; | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:674:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 674 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h: In instantiation of 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal, TSufPrefSpec) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet, Alloc<> >, Owner > >; TMyersPatterns = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec<>; TSufPrefSpec = LongestPrefix; SwiftSemiGlobal = Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2591:20: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TOriReadSet = StringSet, Alloc<> >, Owner > >; TReadIndexL = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2237:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, UngappedShape<0> >; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:3072:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2169:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:666:22: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 666 | TGenomeInfix oriInf = inf; | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:674:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 674 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h: In instantiation of 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet, Alloc<> >, Owner > >; TMyersPatterns = String, Alloc<> >, Myers > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:763:21: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:1028:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2122:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2195:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:1430:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1430 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h: In instantiation of 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet, Alloc<> >, Owner > >; TMyersPatterns = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:1658:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:1979:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2125:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2195:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:1430:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1430 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement >; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:140:13: required from 'seqan::ModifiedString::ModifiedString(THost_&&, typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type*) [with THost_ = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; THost = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >; TSpec = seqan::Tag; typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type = void; typename seqan::RemoveReference::Type = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >; typename seqan::RemoveReference::Type = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_shortcuts.h:340:12: required from 'typename seqan::ReverseComplementString::Type seqan::reverseComplementString(const THost&) [with THost = Segment, Alloc<> >, InfixSegment>; typename ReverseComplementString::Type = ModifiedString, Alloc<> >, InfixSegment>, ModView > > >, Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/outputFormat.h:1591:40: required from 'void seqan::dumpMatches(TMatches&, const TGenomeNames&, StringSet > >&, std::map, unsigned int> >&, const TReads&, const TReadRegions&, TCounts&, const TReadNames&, CharString, CharString, RazerSOptions&) [with TMatches = String >; TGenomeNames = StringSet > >; TReads = StringSet, Alloc<> >, Owner > >; TReadRegions = String > > >; TReadNames = StringSet > >; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:281:14: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:604:11: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:94: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment, Alloc<> >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter >, StreamIterator > >; TContainer = Segment, Alloc<> >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const Segment&) [with TStream = VirtualStream >; THost = const String, Alloc<> >; TSpec = InfixSegment]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/outputFormat.h:900:12: required from 'void seqan::dumpMatches(TMatches&, const TGenomeNames&, StringSet > >&, std::map, unsigned int> >&, const TReads&, const TReadRegions&, TCounts&, const TReadNames&, CharString, CharString, RazerSOptions&) [with TMatches = String >; TGenomeNames = StringSet > >; TReads = StringSet, Alloc<> >, Owner > >; TReadRegions = String > > >; TReadNames = StringSet > >; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:281:14: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_iterator.h:80, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:86: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:98:7: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(const ModifiedString >&, Tag) [with THost = ModifiedString, Alloc<> >, InfixSegment>, ModView > > >; TTagSpec = Rooted_; typename Iterator >, const Tag >::Type = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, ModView > > >, Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const ModifiedString, Alloc<> >, InfixSegment>, ModView > > >, Tag >; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, ModView > > >, Tag >; typename Iterator >::Type = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, ModView > > >, Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter >, StreamIterator > >; TContainer = ModifiedString, Alloc<> >, InfixSegment>, ModView > > >, Tag >; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:801:10: required from 'TStream& seqan::operator<<(TStream&, const ModifiedString&) [with TStream = VirtualStream >; THost = ModifiedString, Alloc<> >, InfixSegment>, ModView > > >; TSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/outputFormat.h:1591:14: required from 'void seqan::dumpMatches(TMatches&, const TGenomeNames&, StringSet > >&, std::map, unsigned int> >&, const TReads&, const TReadRegions&, TCounts&, const TReadNames&, CharString, CharString, RazerSOptions&) [with TMatches = String >; TGenomeNames = StringSet > >; TReads = StringSet, Alloc<> >, Owner > >; TReadRegions = String > > >; TReadNames = StringSet > >; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:281:14: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:604:11: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:385:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:395:32: required from 'seqan::Finder >::Finder(THaystack&, TRepeatSize, TPeriodSize) [with TRepeatSize = int; TPeriodSize = int; THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2419:16: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TOriReadSet = StringSet, Alloc<> >, Owner > >; TReadIndexL = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2237:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, UngappedShape<0> >; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:3039:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2169:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:343:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 343 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find.h:55: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = Swift > >; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1928:77: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2454:13: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TOriReadSet = StringSet, Alloc<> >, Owner > >; TReadIndexL = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2237:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, UngappedShape<0> >; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:3039:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2169:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:599:38: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 599 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:222: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1929:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2454:13: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TOriReadSet = StringSet, Alloc<> >, Owner > >; TReadIndexL = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2237:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, OneGappedShape>; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:3041:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2169:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 752 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:87: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1929:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2454:13: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TOriReadSet = StringSet, Alloc<> >, Owner > >; TReadIndexL = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2237:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, GappedShape > >; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:3043:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2169:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 752 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/cyclic_shape.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:68: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = Swift > >; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1928:77: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2454:13: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TOriReadSet = StringSet, Alloc<> >, Owner > >; TReadIndexL = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2237:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, UngappedShape<0> >; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:3072:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2169:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:599:38: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 599 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:118:25: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:674:19: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal, TSufPrefSpec) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet, Alloc<> >, Owner > >; TMyersPatterns = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec<>; TSufPrefSpec = LongestSuffix; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2543:21: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TOriReadSet = StringSet, Alloc<> >, Owner > >; TReadIndexL = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2237:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, UngappedShape<0> >; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:3072:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2169:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1929:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2454:13: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TOriReadSet = StringSet, Alloc<> >, Owner > >; TReadIndexL = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2237:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, OneGappedShape>; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:3074:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2169:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 752 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1929:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2454:13: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TOriReadSet = StringSet, Alloc<> >, Owner > >; TReadIndexL = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2237:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, GappedShape > >; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:3076:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2169:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 752 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:385:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:395:32: required from 'seqan::Finder >::Finder(THaystack&, TRepeatSize, TPeriodSize) [with TRepeatSize = int; TPeriodSize = int; THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:671:16: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:1028:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2122:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2184:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:343:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 343 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = Swift > >; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1928:77: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:705:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:1028:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2122:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2184:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:599:38: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 599 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1929:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:705:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:1028:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2122:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2187:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 752 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1929:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:705:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:1028:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2122:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2190:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 752 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = Swift > >; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1928:77: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:705:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:1028:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2122:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2195:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:599:38: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 599 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:118:25: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:1430:19: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet, Alloc<> >, Owner > >; TMyersPatterns = String, Alloc<> >, Myers > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:763:21: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:1028:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2122:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2195:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1929:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:705:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:1028:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2122:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2198:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 752 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1929:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:705:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:1028:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2122:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2201:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:752:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 752 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::host(Finder&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = Swift > >; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1866:36: required from 'bool seqan::_firstNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1934:34: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2454:13: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TOriReadSet = StringSet, Alloc<> >, Owner > >; TReadIndexL = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2237:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, UngappedShape<0> >; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:3039:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2169:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:585:38: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 585 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, TIntegral) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag; TIntegral = long unsigned int]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1876:41: required from 'bool seqan::_firstNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1934:34: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2454:13: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TOriReadSet = StringSet, Alloc<> >, Owner > >; TReadIndexL = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2237:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, UngappedShape<0> >; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:3039:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2169:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:577:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 577 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(const Finder&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = Swift > >; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:910:21: required from 'typename seqan::Parameter_::Type>::Type seqan::haystack(const TObject&) [with TObject = Finder, Alloc<> >, InfixSegment>, Swift > > >; typename Parameter_::Type>::Type = Segment, Alloc<> >, InfixSegment>; typename Haystack::Type = const Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1682:38: required from 'seqan::Pair > >::Type> seqan::positionRange(const Finder >&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = Tag >; typename Position > >::Type = long unsigned int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1693:25: required from 'seqan::Pair > >::Type> seqan::positionRange(Finder >&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = Tag >; typename Position > >::Type = long unsigned int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2489:26: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TOriReadSet = StringSet, Alloc<> >, Owner > >; TReadIndexL = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2237:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, UngappedShape<0> >; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:3039:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2169:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:606:38: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 606 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::host(Finder&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = Swift > >; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1866:36: required from 'bool seqan::_firstNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1934:34: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2454:13: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TOriReadSet = StringSet, Alloc<> >, Owner > >; TReadIndexL = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2237:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, UngappedShape<0> >; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:3072:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2169:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:585:38: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 585 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(const Finder&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = Swift > >; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:910:21: required from 'typename seqan::Parameter_::Type>::Type seqan::haystack(const TObject&) [with TObject = Finder, Alloc<> >, InfixSegment>, Swift > > >; typename Parameter_::Type>::Type = Segment, Alloc<> >, InfixSegment>; typename Haystack::Type = const Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1682:38: required from 'seqan::Pair > >::Type> seqan::positionRange(const Finder >&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = Tag >; typename Position > >::Type = long unsigned int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1693:25: required from 'seqan::Pair > >::Type> seqan::positionRange(Finder >&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = Tag >; typename Position > >::Type = long unsigned int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2489:26: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TOriReadSet = StringSet, Alloc<> >, Owner > >; TReadIndexL = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2237:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, UngappedShape<0> >; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:3072:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2169:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:606:38: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 606 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_iterator.h:72:7: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(ModifiedString >&, Tag) [with THost = Segment, Alloc<> >, InfixSegment>; TTagSpec = Rooted_; typename Iterator >, const Tag >::Type = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:301:30: required from 'seqan::Finder::Finder(THaystack&) [with THaystack = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:675:19: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal, TSufPrefSpec) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet, Alloc<> >, Owner > >; TMyersPatterns = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec<>; TSufPrefSpec = LongestSuffix; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2543:21: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TOriReadSet = StringSet, Alloc<> >, Owner > >; TReadIndexL = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2237:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, UngappedShape<0> >; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:3072:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2169:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::host(Finder&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = Swift > >; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1866:36: required from 'bool seqan::_firstNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1934:34: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:705:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:1028:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2122:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2184:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:585:38: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 585 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, TIntegral) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag; TIntegral = long unsigned int]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1876:41: required from 'bool seqan::_firstNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1934:34: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:705:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:1028:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2122:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2184:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:577:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 577 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, TIntegral) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag; TIntegral = unsigned int]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1845:48: required from 'bool seqan::_nextNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1965:37: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:705:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:1028:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2122:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2184:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:577:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 577 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::host(Finder&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = Swift > >; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1866:36: required from 'bool seqan::_firstNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1934:34: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:705:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:1028:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2122:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2195:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:585:38: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 585 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_iterator.h:72:7: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(ModifiedString >&, Tag) [with THost = Segment, Alloc<> >, InfixSegment>; TTagSpec = Rooted_; typename Iterator >, const Tag >::Type = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:301:30: required from 'seqan::Finder::Finder(THaystack&) [with THaystack = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:1432:19: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet, Alloc<> >, Owner > >; TMyersPatterns = String, Alloc<> >, Myers > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:763:21: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:1028:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2122:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2195:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:520:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:663:20: required from 'typename seqan::Iterator, const seqan::Tag >::Type seqan::end(ModifiedString&, Tag) [with THost = const Segment, Alloc<> >, InfixSegment>; TSpec = ModView > >; TTagSpec = Rooted_; typename Iterator, const Tag >::Type = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, ModView > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_reverse.h:458:102: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(const ModifiedString >&, Tag) [with THost = ModifiedString, Alloc<> >, InfixSegment>, ModView > > >; TTagSpec = Rooted_; typename Iterator >, const Tag >::Type = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, ModView > > >, Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const ModifiedString, Alloc<> >, InfixSegment>, ModView > > >, Tag >; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, ModView > > >, Tag >; typename Iterator >::Type = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, ModView > > >, Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter >, StreamIterator > >; TContainer = ModifiedString, Alloc<> >, InfixSegment>, ModView > > >, Tag >; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:801:10: required from 'TStream& seqan::operator<<(TStream&, const ModifiedString&) [with TStream = VirtualStream >; THost = ModifiedString, Alloc<> >, InfixSegment>, ModView > > >; TSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/outputFormat.h:1591:14: required from 'void seqan::dumpMatches(TMatches&, const TGenomeNames&, StringSet > >&, std::map, unsigned int> >&, const TReads&, const TReadRegions&, TCounts&, const TReadNames&, CharString, CharString, RazerSOptions&) [with TMatches = String >; TGenomeNames = StringSet > >; TReads = StringSet, Alloc<> >, Owner > >; TReadRegions = String > > >; TReadNames = StringSet > >; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:281:14: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 486 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_fundamental.h:72, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSource = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; typename DisableIf > >::Type = void]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TValue2 = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; typename Reference > >::Type = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:339:17: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Swift > >; typename Host >::Type = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2383:33: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TOriReadSet = StringSet, Alloc<> >, Owner > >; TReadIndexL = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2237:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, UngappedShape<0> >; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:3039:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2169:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 110 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note: because 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::StringSet, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::UngappedShape<0> >; TSpec = seqan::Tag]' 278 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSource = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; typename DisableIf > >::Type = void]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TValue2 = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; typename Reference > >::Type = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:339:17: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Swift > >; typename Host >::Type = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2384:33: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TOriReadSet = StringSet, Alloc<> >, Owner > >; TReadIndexL = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2237:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, OneGappedShape>; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:3041:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2169:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 110 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note: because 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::StringSet, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>; TSpec = seqan::Tag]' 278 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:229:7: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 229 | class Index > { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' first required here 110 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSource = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; typename DisableIf > >::Type = void]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TValue2 = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; typename Reference > >::Type = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:339:17: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSpec = Swift > >; typename Host >::Type = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2384:33: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TOriReadSet = StringSet, Alloc<> >, Owner > >; TReadIndexL = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2237:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, GappedShape > >; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:3043:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2169:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note: because 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::StringSet, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::GappedShape > >; TSpec = seqan::Tag]' 278 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:229:7: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 229 | class Index > { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method 'seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' first required here 110 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = void; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1603:45: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, void>; TNeedle = Segment, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1636:16: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&, int) [with TFinder = Finder, Alloc<> >, InfixSegment>, void>; TNeedle = Segment, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1654:16: required from 'bool seqan::find(TFinder&, Pattern >&, int) [with TFinder = Finder, Alloc<> >, InfixSegment>, void>; TNeedle = Segment, Alloc<> >, InfixSegment>; TSpec = FindInfix; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:652:13: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal, TSufPrefSpec) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet, Alloc<> >, Owner > >; TMyersPatterns = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec<>; TSufPrefSpec = LongestSuffix; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2543:21: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TOriReadSet = StringSet, Alloc<> >, Owner > >; TReadIndexL = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2237:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, UngappedShape<0> >; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:3072:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2169:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:599:38: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 599 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:512:23: required from 'typename seqan::Iterator >::Type seqan::end(T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_reverse.h:469:24: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(ModifiedString >&, Tag) [with THost = Segment, Alloc<> >, InfixSegment>; TTagSpec = Rooted_; typename Iterator >, const Tag >::Type = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:301:30: required from 'seqan::Finder::Finder(THaystack&) [with THaystack = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:675:19: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal, TSufPrefSpec) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet, Alloc<> >, Owner > >; TMyersPatterns = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec<>; TSufPrefSpec = LongestSuffix; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2543:21: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TOriReadSet = StringSet, Alloc<> >, Owner > >; TReadIndexL = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2237:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, UngappedShape<0> >; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:3072:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2169:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:478:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 478 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:105: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment, Alloc<> >, InfixSegment>&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:1717:14: required from 'bool seqan::combineLeftRight(TMatch&, TMatch&, TRead&, TGenome&, RazerSOptions&, char, SwiftSemiGlobal) [with TMatch = ReadMatch; TRead = const Segment, Alloc<> >, InfixSegment>; TGenome = String, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2701:25: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TOriReadSet = StringSet, Alloc<> >, Owner > >; TReadIndexL = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2237:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, UngappedShape<0> >; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:3072:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2169:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1342 | TTargetValue temp_copy(std::forward(_value)); //temp copy because resize could invalidate _value | ^~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSource = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; typename DisableIf > >::Type = void]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TValue2 = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; typename Reference > >::Type = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:339:17: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Swift > >; typename Host >::Type = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:652:32: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:1028:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2122:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2184:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 110 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note: because 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::UngappedShape<0> >; TSpec = seqan::Tag]' 278 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSource = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; typename DisableIf > >::Type = void]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TValue2 = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; typename Reference > >::Type = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:339:17: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Swift > >; typename Host >::Type = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:652:32: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:1028:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2122:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2187:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 110 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note: because 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>; TSpec = seqan::Tag]' 278 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:229:7: warning: implicitly-declared 'constexpr seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 229 | class Index > { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' first required here 110 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSource = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; typename DisableIf > >::Type = void]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TValue2 = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; typename Reference > >::Type = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:339:17: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Swift > >; typename Host >::Type = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:652:32: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:1028:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2122:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2190:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:278:5: note: because 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::GappedShape > >; TSpec = seqan::Tag]' 278 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:229:7: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 229 | class Index > { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: note: synthesized method 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' first required here 110 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = void; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1603:45: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, void>; TNeedle = String, Alloc<> >; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1636:16: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&, int) [with TFinder = Finder, Alloc<> >, InfixSegment>, void>; TNeedle = String, Alloc<> >; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1654:16: required from 'bool seqan::find(TFinder&, Pattern >&, int) [with TFinder = Finder, Alloc<> >, InfixSegment>, void>; TNeedle = String, Alloc<> >; TSpec = FindInfix; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:1414:13: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet, Alloc<> >, Owner > >; TMyersPatterns = String, Alloc<> >, Myers > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:763:21: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:1028:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2122:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2195:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:599:38: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 599 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:512:23: required from 'typename seqan::Iterator >::Type seqan::end(T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_reverse.h:469:24: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(ModifiedString >&, Tag) [with THost = Segment, Alloc<> >, InfixSegment>; TTagSpec = Rooted_; typename Iterator >, const Tag >::Type = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:301:30: required from 'seqan::Finder::Finder(THaystack&) [with THaystack = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:1432:19: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet, Alloc<> >, Owner > >; TMyersPatterns = String, Alloc<> >, Myers > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:763:21: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:1028:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2122:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2195:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:478:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 478 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:369:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1845:33: required from 'bool seqan::_nextNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1965:37: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2454:13: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TOriReadSet = StringSet, Alloc<> >, Owner > >; TReadIndexL = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2237:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, UngappedShape<0> >; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:3039:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2169:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:61: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_iterator.h: In instantiation of 'typename seqan::Container >::Type seqan::container(ModifiedIterator&) [with THost = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; TSpec = Tag; typename Container >::Type = ModifiedString, Alloc<> >, InfixSegment>, Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:599:21: required from 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = ModifiedString, Alloc<> >, InfixSegment>, Tag >; TSpec = void; typename Parameter_::Type = ModifiedString, Alloc<> >, InfixSegment>, Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1603:45: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Tag >, void>; TNeedle = ModifiedString, Alloc<> >, InfixSegment>, Tag >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1636:16: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&, int) [with TFinder = Finder, Alloc<> >, InfixSegment>, Tag >, void>; TNeedle = ModifiedString, Alloc<> >, InfixSegment>, Tag >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1654:16: required from 'bool seqan::find(TFinder&, Pattern >&, int) [with TFinder = Finder, Alloc<> >, InfixSegment>, Tag >, void>; TNeedle = ModifiedString, Alloc<> >, InfixSegment>, Tag >; TSpec = FindPrefix; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:688:13: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal, TSufPrefSpec) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet, Alloc<> >, Owner > >; TMyersPatterns = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec<>; TSufPrefSpec = LongestSuffix; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2543:21: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TOriReadSet = StringSet, Alloc<> >, Owner > >; TReadIndexL = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2237:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, UngappedShape<0> >; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:3072:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2169:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_iterator.h:278:16: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 278 | TContainer cont(container(host(me))); | ^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:369:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1845:33: required from 'bool seqan::_nextNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1965:37: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h:1913:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:705:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:1028:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2122:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2184:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_iterator.h: In instantiation of 'typename seqan::Container >::Type seqan::container(ModifiedIterator&) [with THost = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; TSpec = Tag; typename Container >::Type = ModifiedString, Alloc<> >, InfixSegment>, Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:599:21: required from 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = ModifiedString, Alloc<> >, InfixSegment>, Tag >; TSpec = void; typename Parameter_::Type = ModifiedString, Alloc<> >, InfixSegment>, Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1603:45: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Tag >, void>; TNeedle = ModifiedString, Alloc<> >, InfixSegment>, Tag >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1636:16: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&, int) [with TFinder = Finder, Alloc<> >, InfixSegment>, Tag >, void>; TNeedle = ModifiedString, Alloc<> >, InfixSegment>, Tag >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1654:16: required from 'bool seqan::find(TFinder&, Pattern >&, int) [with TFinder = Finder, Alloc<> >, InfixSegment>, Tag >, void>; TNeedle = ModifiedString, Alloc<> >, InfixSegment>, Tag >; TSpec = FindPrefix; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:1437:13: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet, Alloc<> >, Owner > >; TMyersPatterns = String, Alloc<> >, Myers > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:763:21: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:1028:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2122:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2195:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_iterator.h:278:16: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 278 | TContainer cont(container(host(me))); | ^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_fundamental.h:82: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1348:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2701:25: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TOriReadSet = StringSet, Alloc<> >, Owner > >; TReadIndexL = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2237:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, UngappedShape<0> >; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:3072:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2169:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1354:27: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2701:25: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TOriReadSet = StringSet, Alloc<> >, Owner > >; TReadIndexL = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index, Alloc<> >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:2237:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, UngappedShape<0> >; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:3072:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2169:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>; TValue2 = const Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:887:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Segment, Alloc<> >, InfixSegment>; TSource = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:135:20: required from 'seqan::Holder >::Holder(const THostValue&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THostValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_wotd.h:259:13: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:671:16: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index, Alloc<> >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String, Alloc<> >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_matepairs.h:1028:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2122:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers.h:2184:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet, Alloc<> >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:250:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/splazers.cpp:717:23: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned int': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned short': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned short const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)int', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int &' to 'seqan::BadLexicalCast::BadLexicalCast(int const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)unsigned int', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast(unsigned int const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)short', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, char*>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int &' to 'seqan::BadLexicalCast::BadLexicalCast(short const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)unsigned short', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, char*>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast(unsigned short const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, char*>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char &' to 'seqan::BadLexicalCast::BadLexicalCast(char const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)unsigned char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(unsigned char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, unsigned char, seqan::TagList >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, char*>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char &' to 'seqan::BadLexicalCast::BadLexicalCast(unsigned char const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast(char* const&)signed char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(signed char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, char*>::operator()(signed char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, char*>, signed char>(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'seqan::tagApply >, char*>, unsigned char, seqan::TagList >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, char*>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, char*>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:151:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char &' to 'seqan::BadLexicalCast::BadLexicalCast(signed char const&, char* const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)int', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:21, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(int)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, seqan::String >&>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)short', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(short)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, seqan::String >&>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, seqan::String >&>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(short const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, seqan::String >&>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const char &' to 'seqan::BadLexicalCast::BadLexicalCast > >(char const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(unsigned char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(unsigned char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned char, seqan::TagList >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:627:13, inlined from 'seqan::tagApply >, seqan::String >&>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned char &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned char const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)signed char', inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(signed char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:82:47, inlined from 'seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>::operator()(signed char)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:77:10, inlined from 'seqan::tagApply >, seqan::String >&>, signed char>(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:620:16, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned char, seqan::TagList >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, char, seqan::TagList > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned short, seqan::TagList > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, short, seqan::TagList > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, float, seqan::TagList > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, unsigned int, seqan::TagList > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::tagApply >, seqan::String >&>, int, seqan::TagList > > > > > > >(seqan::AppendTagsSamToBamOneTagHelper_ >, seqan::String >&>&, seqan::TagList > > > > > > >)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h:629:20, inlined from 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_sam_conversion.h:166:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::_appendTagsSamToBamOneTag >, seqan::Iter > const, seqan::AdaptorIterator > > >(seqan::String >&, seqan::Iter > const, seqan::AdaptorIterator > >&, seqan::String >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const signed char &' to 'seqan::BadLexicalCast::BadLexicalCast > >(signed char const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned short', inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:277:40, inlined from 'seqan::readRecord(seqan::BamAlignmentRecord&, seqan::FormattedFile, seqan::Tag, void>&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:241:15, inlined from 'seqan::loadReadsSam, seqan::Alloc >, seqan::Owner > >, seqan::StringSet >, seqan::Owner > >, seqan::String >, void>, seqan::Alloc >, seqan::RazerSOptions > >(seqan::StringSet, seqan::Alloc >, seqan::Owner > >&, seqan::StringSet >, seqan::Owner > >&, seqan::String >, void>, seqan::Alloc >&, char const*, seqan::RazerSOptions >&)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:236:19: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::loadReadsSam, seqan::Alloc >, seqan::Owner > >, seqan::StringSet >, seqan::Owner > >, seqan::String >, void>, seqan::Alloc >, seqan::RazerSOptions > >(seqan::StringSet, seqan::Alloc >, seqan::Owner > >&, seqan::StringSet >, seqan::Owner > >&, seqan::String >, void>, seqan::Alloc >&, char const*, seqan::RazerSOptions >&)bool': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned short const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned short', inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:306:44, inlined from 'seqan::readRecord(seqan::BamAlignmentRecord&, seqan::FormattedFile, seqan::Tag, void>&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:241:15, inlined from 'seqan::loadReadsSam, seqan::Alloc >, seqan::Owner > >, seqan::StringSet >, seqan::Owner > >, seqan::String >, void>, seqan::Alloc >, seqan::RazerSOptions > >(seqan::StringSet, seqan::Alloc >, seqan::Owner > >&, seqan::StringSet >, seqan::Owner > >&, seqan::String >, void>, seqan::Alloc >&, char const*, seqan::RazerSOptions >&)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:236:19: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::loadReadsSam, seqan::Alloc >, seqan::Owner > >, seqan::StringSet >, seqan::Owner > >, seqan::String >, void>, seqan::Alloc >, seqan::RazerSOptions > >(seqan::StringSet, seqan::Alloc >, seqan::Owner > >&, seqan::StringSet >, seqan::Owner > >&, seqan::String >, void>, seqan::Alloc >&, char const*, seqan::RazerSOptions >&)bool': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const short unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned short const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned int', inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:320:50, inlined from 'seqan::readRecord(seqan::BamAlignmentRecord&, seqan::FormattedFile, seqan::Tag, void>&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:241:15, inlined from 'seqan::loadReadsSam, seqan::Alloc >, seqan::Owner > >, seqan::StringSet >, seqan::Owner > >, seqan::String >, void>, seqan::Alloc >, seqan::RazerSOptions > >(seqan::StringSet, seqan::Alloc >, seqan::Owner > >&, seqan::StringSet >, seqan::Owner > >&, seqan::String >, void>, seqan::Alloc >&, char const*, seqan::RazerSOptions >&)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:236:19: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::loadReadsSam, seqan::Alloc >, seqan::Owner > >, seqan::StringSet >, seqan::Owner > >, seqan::String >, void>, seqan::Alloc >, seqan::RazerSOptions > >(seqan::StringSet, seqan::Alloc >, seqan::Owner > >&, seqan::StringSet >, seqan::Owner > >&, seqan::String >, void>, seqan::Alloc >&, char const*, seqan::RazerSOptions >&)bool': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)int', inlined from 'seqan::readRecord, std::char_traits >, seqan::StreamIterator > >, seqan::StringSet >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >(seqan::BamAlignmentRecord&, seqan::BamIOContext >, seqan::Owner > >, seqan::NameStoreCache >, seqan::Owner > >, seqan::String > >, seqan::Dependent > >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&, seqan::Tag const&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/read_sam.h:363:43, inlined from 'seqan::readRecord(seqan::BamAlignmentRecord&, seqan::FormattedFile, seqan::Tag, void>&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:241:15, inlined from 'seqan::loadReadsSam, seqan::Alloc >, seqan::Owner > >, seqan::StringSet >, seqan::Owner > >, seqan::String >, void>, seqan::Alloc >, seqan::RazerSOptions > >(seqan::StringSet, seqan::Alloc >, seqan::Owner > >&, seqan::StringSet >, seqan::Owner > >&, seqan::String >, void>, seqan::Alloc >&, char const*, seqan::RazerSOptions >&)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/razers_spliced.h:236:19: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::loadReadsSam, seqan::Alloc >, seqan::Owner > >, seqan::StringSet >, seqan::Owner > >, seqan::String >, void>, seqan::Alloc >, seqan::RazerSOptions > >(seqan::StringSet, seqan::Alloc >, seqan::Owner > >&, seqan::StringSet >, seqan::Owner > >&, seqan::String >, void>, seqan::Alloc >&, char const*, seqan::RazerSOptions >&)bool': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned int', inlined from 'seqan::parseGappedParams >, seqan::RazerSSpec >(seqan::RazerSOptions >&, std::basic_fstream >&, seqan::ParamChooserOptions&)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/paramChooser.h:829:51, inlined from 'seqan::chooseParams >(seqan::RazerSOptions >&, seqan::ParamChooserOptions&)bool' at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers/paramChooser.h:1107:20: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'seqan::chooseParams >(seqan::RazerSOptions >&, seqan::ParamChooserOptions&)bool': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned int const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ [ 93%] Linking CXX executable ../../bin/splazers cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/splazers && /usr/bin/cmake -E cmake_link_script CMakeFiles/splazers.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/splazers.dir/splazers.cpp.o -o ../../bin/splazers -lrt In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'obtainId' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_idmanager.h:166:15, inlined from 'addVertex' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_types/graph_impl_undirected.h:357:36, inlined from 'addVertex' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_align/graph_impl_align.h:500:37: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function 'addVertex': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 93%] Built target splazers make -f apps/stellar/CMakeFiles/stellar.dir/build.make apps/stellar/CMakeFiles/stellar.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/stellar /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/stellar/CMakeFiles/stellar.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/stellar/CMakeFiles/stellar.dir/build.make apps/stellar/CMakeFiles/stellar.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 93%] Building CXX object apps/stellar/CMakeFiles/stellar.dir/stellar.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/stellar && /usr/bin/g++ -DSEQAN_APP_VERSION=\"1.4.11\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/stellar/CMakeFiles/stellar.dir/stellar.cpp.o -MF CMakeFiles/stellar.dir/stellar.cpp.o.d -o CMakeFiles/stellar.dir/stellar.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse.h:46, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:24: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/debug_test_system.h:150, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse.h:44: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:42, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:25: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find.h:47, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:46: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:47: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:76: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:91: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:102: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:107: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:110: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:111: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:114: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:121: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:125: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:131: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:188: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:50, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/bam_sam.h:39, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:55: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:30, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:28: /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar_types.h:155:32: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 155 | struct LessPos : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar_types.h:207:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 207 | struct LessLength : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:127:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:685:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:677:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 677 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:96, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:58: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:690:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 690 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:60:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:685:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:677:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 677 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:690:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 690 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:685:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:677:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 677 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:690:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 690 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:68:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:685:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:677:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 677 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:690:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 690 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:687:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:677:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 677 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:690:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 690 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:60:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:687:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:677:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 677 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:690:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 690 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:687:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:677:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 677 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:690:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 690 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:68:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:687:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:677:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 677 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:690:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 690 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:689:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:677:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 677 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:690:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 690 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:60:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:689:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:677:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 677 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:690:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 690 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:689:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:677:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 677 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:690:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 690 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:68:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:689:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:677:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 677 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:690:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 690 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:691:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:677:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 677 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:690:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 690 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:60:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:691:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:677:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 677 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:690:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 690 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:691:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:677:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 677 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:690:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 690 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:68:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:691:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:677:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 677 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:690:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 690 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:693:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:677:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 677 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:690:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 690 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:60:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:693:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:677:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 677 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:690:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 690 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:693:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:677:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 677 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:690:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 690 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:68:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:693:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:677:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 677 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:690:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 690 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:695:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:677:47: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 677 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:690:74: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 690 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:60:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:695:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:677:47: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 677 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:690:74: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 690 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:695:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:677:47: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 677 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:690:74: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 690 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:68:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:695:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:677:47: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 677 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:690:74: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 690 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:102:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 102 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:241:14: required from 'bool _importSequences(const seqan::CharString&, const seqan::CharString&, seqan::StringSet >&, seqan::StringSet >&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:618:26: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:685:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:103:29: required from 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:677:33: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:685:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h: In instantiation of 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:614:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:685:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:194:24: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 194 | TAlign ali(align); | ^~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:97: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:103:29: required from 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:677:33: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:687:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h: In instantiation of 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:614:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:687:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:194:24: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 194 | TAlign ali(align); | ^~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:103:29: required from 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:677:33: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:689:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h: In instantiation of 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:614:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:689:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:194:24: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 194 | TAlign ali(align); | ^~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:103:29: required from 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:677:33: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:691:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h: In instantiation of 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:614:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:691:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:194:24: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 194 | TAlign ali(align); | ^~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:103:29: required from 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:677:33: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:693:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h: In instantiation of 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:614:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:693:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:194:24: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 194 | TAlign ali(align); | ^~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:103:29: required from 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:677:33: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:695:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h: In instantiation of 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:614:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:695:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:194:24: warning: implicitly-declared 'seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 194 | TAlign ali(align); | ^~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:241:14: required from 'bool _importSequences(const seqan::CharString&, const seqan::CharString&, seqan::StringSet >&, seqan::StringSet >&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:618:26: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:685:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_smart_pointer.h:47, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_allocator.h:46, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:74: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(const T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:202:32: required from 'typename seqan::Parameter_::Type seqan::host(const Segment&) [with THost_ = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:577:88: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:685:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_type.h:365:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 365 | return _object; | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(const T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:202:32: required from 'typename seqan::Parameter_::Type seqan::host(const Segment&) [with THost_ = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:577:88: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:687:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_type.h:365:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 365 | return _object; | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(const T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:202:32: required from 'typename seqan::Parameter_::Type seqan::host(const Segment&) [with THost_ = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:577:88: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:689:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_type.h:365:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 365 | return _object; | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(const T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:202:32: required from 'typename seqan::Parameter_::Type seqan::host(const Segment&) [with THost_ = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:577:88: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:691:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_type.h:365:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 365 | return _object; | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(const T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:202:32: required from 'typename seqan::Parameter_::Type seqan::host(const Segment&) [with THost_ = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:577:88: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:693:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_type.h:365:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 365 | return _object; | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(const T&) [with T = Segment >, InfixSegment>; typename Parameter_::Type = Segment >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:202:32: required from 'typename seqan::Parameter_::Type seqan::host(const Segment&) [with THost_ = Segment >, InfixSegment>; typename Parameter_::Type = Segment >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:577:88: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:695:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_type.h:365:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 365 | return _object; | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:241:14: required from 'bool _importSequences(const seqan::CharString&, const seqan::CharString&, seqan::StringSet >&, seqan::StringSet >&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:618:26: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:685:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:241:14: required from 'bool _importSequences(const seqan::CharString&, const seqan::CharString&, seqan::StringSet >&, seqan::StringSet >&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:618:26: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:685:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:195:32: required from 'typename seqan::Parameter_::Type seqan::host(Segment&) [with THost_ = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar_extension.h:773:28: required from 'void integrateAlign(seqan::Align&, const seqan::Align, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec1 = seqan::Tag; TSpec2 = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:467:16: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:685:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_type.h:358:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 358 | return _object; | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:195:32: required from 'typename seqan::Parameter_::Type seqan::host(Segment&) [with THost_ = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar_extension.h:773:28: required from 'void integrateAlign(seqan::Align&, const seqan::Align, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec1 = seqan::Tag; TSpec2 = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:467:16: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:687:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_type.h:358:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 358 | return _object; | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:195:32: required from 'typename seqan::Parameter_::Type seqan::host(Segment&) [with THost_ = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar_extension.h:773:28: required from 'void integrateAlign(seqan::Align&, const seqan::Align, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec1 = seqan::Tag; TSpec2 = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:467:16: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:689:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_type.h:358:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 358 | return _object; | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:195:32: required from 'typename seqan::Parameter_::Type seqan::host(Segment&) [with THost_ = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar_extension.h:773:28: required from 'void integrateAlign(seqan::Align&, const seqan::Align, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec1 = seqan::Tag; TSpec2 = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:467:16: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:691:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_type.h:358:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 358 | return _object; | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:195:32: required from 'typename seqan::Parameter_::Type seqan::host(Segment&) [with THost_ = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar_extension.h:773:28: required from 'void integrateAlign(seqan::Align&, const seqan::Align, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec1 = seqan::Tag; TSpec2 = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:467:16: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:693:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_type.h:358:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 358 | return _object; | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(T&) [with T = Segment >, InfixSegment>; typename Parameter_::Type = Segment >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:195:32: required from 'typename seqan::Parameter_::Type seqan::host(Segment&) [with THost_ = Segment >, InfixSegment>; typename Parameter_::Type = Segment >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar_extension.h:773:28: required from 'void integrateAlign(seqan::Align&, const seqan::Align, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String >; TSpec1 = seqan::Tag; TSpec2 = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:467:16: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:695:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_type.h:358:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 358 | return _object; | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:241:14: required from 'bool _importSequences(const seqan::CharString&, const seqan::CharString&, seqan::StringSet >&, seqan::StringSet >&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:618:26: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:685:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:190: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In instantiation of 'void seqan::_alignBandedSmithWatermanDeclump(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, const TScore&, TScoreValue, TDiagonal, TDiagonal) [with TScoreValue = int; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScore = Score >; TDiagonal = int]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:570:37: required from 'TScoreValue seqan::_localAlignmentNext(LocalAlignmentFinder&, Gaps&, Gaps&, const TScore&, TScoreValue, TDiagonal, TDiagonal, const BandedWatermanEggert&) [with TScoreValue = int; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecH = Tag; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecV = Tag; TScore = Score >; TDiagonal = int; BandedWatermanEggert = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/local_alignment_enumeration_banded.h:109:35: required from 'bool seqan::nextLocalAlignment(Gaps&, Gaps&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecH = Tag; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecV = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/local_alignment_enumeration_banded.h:121:30: required from 'bool seqan::nextLocalAlignment(Align&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequence = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TAlignSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:607:30: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:685:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:287:20: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 287 | matIt2 = matIt - diagonalWidth; | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_iterator.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:86: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:105: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&; TExpand = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TTargetSpec = Alloc<>; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String, Alloc<> >, InfixSegment>, InfixSegment>, Tag >, Alloc<> >&; TSource = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:217:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:614:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:685:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 1342 | TTargetValue temp_copy(std::forward(_value)); //temp copy because resize could invalidate _value | ^~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In instantiation of 'void seqan::_alignBandedSmithWatermanDeclump(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, const TScore&, TScoreValue, TDiagonal, TDiagonal) [with TScoreValue = int; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScore = Score >; TDiagonal = int]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:570:37: required from 'TScoreValue seqan::_localAlignmentNext(LocalAlignmentFinder&, Gaps&, Gaps&, const TScore&, TScoreValue, TDiagonal, TDiagonal, const BandedWatermanEggert&) [with TScoreValue = int; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecH = Tag; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecV = Tag; TScore = Score >; TDiagonal = int; BandedWatermanEggert = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/local_alignment_enumeration_banded.h:109:35: required from 'bool seqan::nextLocalAlignment(Gaps&, Gaps&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecH = Tag; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecV = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/local_alignment_enumeration_banded.h:121:30: required from 'bool seqan::nextLocalAlignment(Align&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequence = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TAlignSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:607:30: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:687:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:287:20: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 287 | matIt2 = matIt - diagonalWidth; | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&; TExpand = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TTargetSpec = Alloc<>; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String, Alloc<> >, InfixSegment>, InfixSegment>, Tag >, Alloc<> >&; TSource = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:217:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:614:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:687:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 1342 | TTargetValue temp_copy(std::forward(_value)); //temp copy because resize could invalidate _value | ^~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In instantiation of 'void seqan::_alignBandedSmithWatermanDeclump(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, const TScore&, TScoreValue, TDiagonal, TDiagonal) [with TScoreValue = int; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScore = Score >; TDiagonal = int]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:570:37: required from 'TScoreValue seqan::_localAlignmentNext(LocalAlignmentFinder&, Gaps&, Gaps&, const TScore&, TScoreValue, TDiagonal, TDiagonal, const BandedWatermanEggert&) [with TScoreValue = int; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecH = Tag; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecV = Tag; TScore = Score >; TDiagonal = int; BandedWatermanEggert = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/local_alignment_enumeration_banded.h:109:35: required from 'bool seqan::nextLocalAlignment(Gaps&, Gaps&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecH = Tag; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecV = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/local_alignment_enumeration_banded.h:121:30: required from 'bool seqan::nextLocalAlignment(Align&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequence = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TAlignSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:607:30: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:689:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:287:20: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 287 | matIt2 = matIt - diagonalWidth; | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&; TExpand = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TTargetSpec = Alloc<>; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String, Alloc<> >, InfixSegment>, InfixSegment>, Tag >, Alloc<> >&; TSource = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:217:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:614:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:689:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 1342 | TTargetValue temp_copy(std::forward(_value)); //temp copy because resize could invalidate _value | ^~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In instantiation of 'void seqan::_alignBandedSmithWatermanDeclump(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, const TScore&, TScoreValue, TDiagonal, TDiagonal) [with TScoreValue = int; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScore = Score >; TDiagonal = int]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:570:37: required from 'TScoreValue seqan::_localAlignmentNext(LocalAlignmentFinder&, Gaps&, Gaps&, const TScore&, TScoreValue, TDiagonal, TDiagonal, const BandedWatermanEggert&) [with TScoreValue = int; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecH = Tag; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecV = Tag; TScore = Score >; TDiagonal = int; BandedWatermanEggert = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/local_alignment_enumeration_banded.h:109:35: required from 'bool seqan::nextLocalAlignment(Gaps&, Gaps&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecH = Tag; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecV = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/local_alignment_enumeration_banded.h:121:30: required from 'bool seqan::nextLocalAlignment(Align&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequence = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TAlignSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:607:30: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:691:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:287:20: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 287 | matIt2 = matIt - diagonalWidth; | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&; TExpand = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TTargetSpec = Alloc<>; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String, Alloc<> >, InfixSegment>, InfixSegment>, Tag >, Alloc<> >&; TSource = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:217:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:614:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:691:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 1342 | TTargetValue temp_copy(std::forward(_value)); //temp copy because resize could invalidate _value | ^~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In instantiation of 'void seqan::_alignBandedSmithWatermanDeclump(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, const TScore&, TScoreValue, TDiagonal, TDiagonal) [with TScoreValue = int; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScore = Score >; TDiagonal = int]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:570:37: required from 'TScoreValue seqan::_localAlignmentNext(LocalAlignmentFinder&, Gaps&, Gaps&, const TScore&, TScoreValue, TDiagonal, TDiagonal, const BandedWatermanEggert&) [with TScoreValue = int; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecH = Tag; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecV = Tag; TScore = Score >; TDiagonal = int; BandedWatermanEggert = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/local_alignment_enumeration_banded.h:109:35: required from 'bool seqan::nextLocalAlignment(Gaps&, Gaps&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecH = Tag; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecV = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/local_alignment_enumeration_banded.h:121:30: required from 'bool seqan::nextLocalAlignment(Align&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequence = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TAlignSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:607:30: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:693:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:287:20: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 287 | matIt2 = matIt - diagonalWidth; | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&; TExpand = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TTargetSpec = Alloc<>; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String, Alloc<> >, InfixSegment>, InfixSegment>, Tag >, Alloc<> >&; TSource = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:217:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:614:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:693:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 1342 | TTargetValue temp_copy(std::forward(_value)); //temp copy because resize could invalidate _value | ^~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In instantiation of 'void seqan::_alignBandedSmithWatermanDeclump(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, const TScore&, TScoreValue, TDiagonal, TDiagonal) [with TScoreValue = int; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScore = Score >; TDiagonal = int]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:570:37: required from 'TScoreValue seqan::_localAlignmentNext(LocalAlignmentFinder&, Gaps&, Gaps&, const TScore&, TScoreValue, TDiagonal, TDiagonal, const BandedWatermanEggert&) [with TScoreValue = int; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TGapsSpecH = Tag; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TGapsSpecV = Tag; TScore = Score >; TDiagonal = int; BandedWatermanEggert = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/local_alignment_enumeration_banded.h:109:35: required from 'bool seqan::nextLocalAlignment(Gaps&, Gaps&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TGapsSpecH = Tag; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TGapsSpecV = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/local_alignment_enumeration_banded.h:121:30: required from 'bool seqan::nextLocalAlignment(Align&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequence = Segment >, InfixSegment>, InfixSegment>; TAlignSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:607:30: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:695:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:287:20: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] 287 | matIt2 = matIt - diagonalWidth; | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&; TExpand = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Align >, InfixSegment>, InfixSegment>, Tag >; TTargetSpec = Alloc<>; TValue = Align >, InfixSegment>, InfixSegment>, Tag >&; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String >, InfixSegment>, InfixSegment>, Tag >, Alloc<> >&; TSource = Align >, InfixSegment>, InfixSegment>, Tag >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:217:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:614:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:695:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared 'seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 1342 | TTargetValue temp_copy(std::forward(_value)); //temp copy because resize could invalidate _value | ^~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:241:14: required from 'bool _importSequences(const seqan::CharString&, const seqan::CharString&, seqan::StringSet >&, seqan::StringSet >&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:618:26: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:685:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_fundamental.h:72, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TSource = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; typename DisableIf > >::Type = void]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TValue2 = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; typename Reference > >::Type = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:339:17: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TSpec = Swift >; typename Host >::Type = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:395:16: required from 'typename seqan::Needle >::Type& seqan::needle(Pattern&) [with TNeedle = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TSpec = Swift >; typename Needle >::Type = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:687:78: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:685:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 110 | target = source; | ~~~~~~~^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:92: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because 'seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TShapeSpec = seqan::UngappedShape<0>]' 143 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TSource = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; typename DisableIf > >::Type = void]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TValue2 = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; typename Reference > >::Type = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:339:17: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TSpec = Swift >; typename Host >::Type = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:395:16: required from 'typename seqan::Needle >::Type& seqan::needle(Pattern&) [with TNeedle = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TSpec = Swift >; typename Needle >::Type = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:687:78: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:687:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 110 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because 'seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TShapeSpec = seqan::UngappedShape<0>]' 143 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TSource = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; typename DisableIf > >::Type = void]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TValue2 = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; typename Reference > >::Type = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:339:17: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TSpec = Swift >; typename Host >::Type = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:395:16: required from 'typename seqan::Needle >::Type& seqan::needle(Pattern&) [with TNeedle = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TSpec = Swift >; typename Needle >::Type = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:687:78: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:689:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 110 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because 'seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TShapeSpec = seqan::UngappedShape<0>]' 143 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TSource = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; typename DisableIf > >::Type = void]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TValue2 = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; typename Reference > >::Type = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:339:17: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TSpec = Swift >; typename Host >::Type = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:395:16: required from 'typename seqan::Needle >::Type& seqan::needle(Pattern&) [with TNeedle = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TSpec = Swift >; typename Needle >::Type = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:687:78: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:691:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 110 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because 'seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TShapeSpec = seqan::UngappedShape<0>]' 143 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TSource = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; typename DisableIf > >::Type = void]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TValue2 = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; typename Reference > >::Type = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:339:17: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TSpec = Swift >; typename Host >::Type = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:395:16: required from 'typename seqan::Needle >::Type& seqan::needle(Pattern&) [with TNeedle = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TSpec = Swift >; typename Needle >::Type = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:687:78: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:693:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 110 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because 'seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TShapeSpec = seqan::UngappedShape<0>]' 143 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = Index >, Dependent > >, IndexQGram, Tag > >; TSource = Index >, Dependent > >, IndexQGram, Tag > >; typename DisableIf > >::Type = void]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index >, Dependent > >, IndexQGram, Tag > >; TValue2 = Index >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Index >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index >, Dependent > >, IndexQGram, Tag > >; typename Reference > >::Type = Index >, Dependent > >, IndexQGram, Tag > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:339:17: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index >, Dependent > >, IndexQGram, Tag > >; TSpec = Swift >; typename Host >::Type = Index >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_pattern_base.h:395:16: required from 'typename seqan::Needle >::Type& seqan::needle(Pattern&) [with TNeedle = Index >, Dependent > >, IndexQGram, Tag > >; TSpec = Swift >; typename Needle >::Type = Index >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:687:78: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:695:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >& seqan::Index >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >::operator=(const seqan::Index >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 110 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because 'seqan::Index >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet >, seqan::Dependent > >; TShapeSpec = seqan::UngappedShape<0>]' 143 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:241:14: required from 'bool _importSequences(const seqan::CharString&, const seqan::CharString&, seqan::StringSet >&, seqan::StringSet >&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:618:26: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:685:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_fundamental.h:82: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >*; TParam = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >*; TParam = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1348:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TTargetSpec = Alloc<>; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String, Alloc<> >, InfixSegment>, InfixSegment>, Tag >, Alloc<> >&; TSource = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:217:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:614:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:685:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >*; TParam = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >*; TParam = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1354:27: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TTargetSpec = Alloc<>; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String, Alloc<> >, InfixSegment>, InfixSegment>, Tag >, Alloc<> >&; TSource = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:217:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:614:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:685:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >*; TParam = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >*; TParam = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1348:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TTargetSpec = Alloc<>; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String, Alloc<> >, InfixSegment>, InfixSegment>, Tag >, Alloc<> >&; TSource = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:217:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:614:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:687:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >*; TParam = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >*; TParam = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1354:27: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TTargetSpec = Alloc<>; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String, Alloc<> >, InfixSegment>, InfixSegment>, Tag >, Alloc<> >&; TSource = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:217:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:614:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:687:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >*; TParam = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >*; TParam = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1348:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TTargetSpec = Alloc<>; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String, Alloc<> >, InfixSegment>, InfixSegment>, Tag >, Alloc<> >&; TSource = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:217:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:614:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:689:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >*; TParam = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >*; TParam = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1354:27: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TTargetSpec = Alloc<>; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String, Alloc<> >, InfixSegment>, InfixSegment>, Tag >, Alloc<> >&; TSource = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:217:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:614:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:689:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >*; TParam = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >*; TParam = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1348:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TTargetSpec = Alloc<>; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String, Alloc<> >, InfixSegment>, InfixSegment>, Tag >, Alloc<> >&; TSource = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:217:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:614:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:691:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >*; TParam = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >*; TParam = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1354:27: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TTargetSpec = Alloc<>; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String, Alloc<> >, InfixSegment>, InfixSegment>, Tag >, Alloc<> >&; TSource = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:217:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:614:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:691:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >*; TParam = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >*; TParam = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1348:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TTargetSpec = Alloc<>; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String, Alloc<> >, InfixSegment>, InfixSegment>, Tag >, Alloc<> >&; TSource = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:217:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:614:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:693:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >*; TParam = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >*; TParam = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1354:27: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TTargetSpec = Alloc<>; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String, Alloc<> >, InfixSegment>, InfixSegment>, Tag >, Alloc<> >&; TSource = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:217:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:614:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:693:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >*; TParam = seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Align >, InfixSegment>, InfixSegment>, Tag >*; TParam = Align >, InfixSegment>, InfixSegment>, Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1348:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Align >, InfixSegment>, InfixSegment>, Tag >; TTargetSpec = Alloc<>; TValue = Align >, InfixSegment>, InfixSegment>, Tag >&; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String >, InfixSegment>, InfixSegment>, Tag >, Alloc<> >&; TSource = Align >, InfixSegment>, InfixSegment>, Tag >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:217:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:614:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:695:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >*; TParam = seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Align >, InfixSegment>, InfixSegment>, Tag >*; TParam = Align >, InfixSegment>, InfixSegment>, Tag >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1354:27: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Align >, InfixSegment>, InfixSegment>, Tag >; TTargetSpec = Alloc<>; TValue = Align >, InfixSegment>, InfixSegment>, Tag >&; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = String >, InfixSegment>, InfixSegment>, Tag >, Alloc<> >&; TSource = Align >, InfixSegment>, InfixSegment>, Tag >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:217:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:614:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:695:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>, InfixSegment>&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TValue2 = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:604:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:685:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment, Alloc<> >, InfixSegment>&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar_extension.h:396:13: required from 'void _fillMatrixBestEndsLeft(TMatrix&, seqan::String&, const seqan::Segment&, const seqan::Segment&, TSeed&, TSeed&, const TScore&) [with TMatrix = seqan::String >; TPossEnd = ExtensionEndPosition; TSequence = seqan::String, seqan::Alloc<> >; TSeed = seqan::Seed >; TScore = seqan::Score >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar_extension.h:697:26: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:633:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:685:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1342 | TTargetValue temp_copy(std::forward(_value)); //temp copy because resize could invalidate _value | ^~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_iterator.h:80: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:624:58: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:99:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:685:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:631:62: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:99:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:685:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:586:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 586 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, TIntegral) [with TContainer = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType*; TSpec = Tag; TIntegral = long int]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:634:69: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:99:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:685:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:577:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 577 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:744:24: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:99:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:685:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>, InfixSegment>&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TValue2 = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:604:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:687:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment, Alloc<> >, InfixSegment>&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar_extension.h:396:13: required from 'void _fillMatrixBestEndsLeft(TMatrix&, seqan::String&, const seqan::Segment&, const seqan::Segment&, TSeed&, TSeed&, const TScore&) [with TMatrix = seqan::String >; TPossEnd = ExtensionEndPosition; TSequence = seqan::String, seqan::Alloc<> >; TSeed = seqan::Seed >; TScore = seqan::Score >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar_extension.h:697:26: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:633:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:687:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1342 | TTargetValue temp_copy(std::forward(_value)); //temp copy because resize could invalidate _value | ^~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:624:58: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:99:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:687:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:631:62: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:99:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:687:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:586:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 586 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, TIntegral) [with TContainer = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType*; TSpec = Tag; TIntegral = long int]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:634:69: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:99:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:687:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:577:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 577 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:744:24: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:99:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:687:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>, InfixSegment>&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TValue2 = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:604:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:689:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment, Alloc<> >, InfixSegment>&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar_extension.h:396:13: required from 'void _fillMatrixBestEndsLeft(TMatrix&, seqan::String&, const seqan::Segment&, const seqan::Segment&, TSeed&, TSeed&, const TScore&) [with TMatrix = seqan::String >; TPossEnd = ExtensionEndPosition; TSequence = seqan::String, seqan::Alloc<> >; TSeed = seqan::Seed >; TScore = seqan::Score >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar_extension.h:697:26: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:633:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:689:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1342 | TTargetValue temp_copy(std::forward(_value)); //temp copy because resize could invalidate _value | ^~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:624:58: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:99:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:689:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:631:62: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:99:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:689:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:586:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 586 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, TIntegral) [with TContainer = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType*; TSpec = Tag; TIntegral = long int]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:634:69: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:99:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:689:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:577:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 577 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:744:24: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:99:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:689:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>, InfixSegment>&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TValue2 = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:604:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:691:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment, Alloc<> >, InfixSegment>&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar_extension.h:396:13: required from 'void _fillMatrixBestEndsLeft(TMatrix&, seqan::String&, const seqan::Segment&, const seqan::Segment&, TSeed&, TSeed&, const TScore&) [with TMatrix = seqan::String >; TPossEnd = ExtensionEndPosition; TSequence = seqan::String, seqan::Alloc<> >; TSeed = seqan::Seed >; TScore = seqan::Score >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar_extension.h:697:26: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:633:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:691:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1342 | TTargetValue temp_copy(std::forward(_value)); //temp copy because resize could invalidate _value | ^~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:624:58: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:99:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:691:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:631:62: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:99:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:691:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:586:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 586 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, TIntegral) [with TContainer = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType*; TSpec = Tag; TIntegral = long int]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:634:69: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:99:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:691:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:577:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 577 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:744:24: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:99:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:691:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>, InfixSegment>&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TValue2 = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:604:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:693:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment, Alloc<> >, InfixSegment>&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar_extension.h:396:13: required from 'void _fillMatrixBestEndsLeft(TMatrix&, seqan::String&, const seqan::Segment&, const seqan::Segment&, TSeed&, TSeed&, const TScore&) [with TMatrix = seqan::String >; TPossEnd = ExtensionEndPosition; TSequence = seqan::String, seqan::Alloc<> >; TSeed = seqan::Seed >; TScore = seqan::Score >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar_extension.h:697:26: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:633:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:693:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1342 | TTargetValue temp_copy(std::forward(_value)); //temp copy because resize could invalidate _value | ^~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:624:58: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:99:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:693:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:631:62: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:99:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:693:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:586:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 586 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, TIntegral) [with TContainer = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType*; TSpec = Tag; TIntegral = long int]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:634:69: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:99:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:693:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:577:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 577 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:744:24: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:99:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:693:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>*; TParam = const seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>&]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment >, InfixSegment>, InfixSegment>*; TParam = const Segment >, InfixSegment>, InfixSegment>&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder >, InfixSegment>, InfixSegment>, Tag >; TValue = Segment >, InfixSegment>, InfixSegment>; typename Value::Type = Segment >, InfixSegment>, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment >, InfixSegment>, InfixSegment>; TValue2 = Segment >, InfixSegment>, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(Holder >&) [with TValue = Segment >, InfixSegment>, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:863:15: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:604:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:695:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment >, seqan::InfixSegment>&; TExpand = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment >, InfixSegment>&; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment >, InfixSegment>; TString2 = Segment >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet >, InfixSegment>, Owner<> >&; TSource = Segment >, InfixSegment>&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar_extension.h:396:13: required from 'void _fillMatrixBestEndsLeft(TMatrix&, seqan::String&, const seqan::Segment&, const seqan::Segment&, TSeed&, TSeed&, const TScore&) [with TMatrix = seqan::String >; TPossEnd = ExtensionEndPosition; TSequence = seqan::String >; TSeed = seqan::Seed >; TScore = seqan::Score >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar_extension.h:697:26: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:633:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:695:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1342 | TTargetValue temp_copy(std::forward(_value)); //temp copy because resize could invalidate _value | ^~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment >, InfixSegment>, InfixSegment>; TIterator = char*; TSpec = Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:624:58: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:99:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:695:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, int) [with TContainer = Segment >, InfixSegment>, InfixSegment>; TIterator = char*; TSpec = Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:631:62: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:99:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:695:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:586:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 586 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, TIntegral) [with TContainer = Segment >, InfixSegment>, InfixSegment>; TIterator = char*; TSpec = Tag; TIntegral = long int]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:634:69: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:99:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:695:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:577:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 577 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:744:24: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:99:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:695:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:94: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:624:41: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:99:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:685:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:520:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:650:29: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:99:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:685:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 486 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:624:41: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:99:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:687:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:520:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:650:29: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:99:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:687:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 486 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:624:41: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:99:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:689:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:520:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:650:29: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:99:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:689:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 486 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:624:41: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:99:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:691:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:520:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:650:29: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:99:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:691:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 486 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:624:41: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:99:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:693:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:520:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:650:29: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:99:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:693:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 486 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, InfixSegment>, AdaptorIterator > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:624:41: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:99:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:695:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment >, InfixSegment>, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:520:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, InfixSegment>, AdaptorIterator > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:650:29: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:99:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:695:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 486 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1348:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment, Alloc<> >, InfixSegment>&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar_extension.h:396:13: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:633:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:685:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1354:27: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment, Alloc<> >, InfixSegment>&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar_extension.h:396:13: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:633:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:685:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = Segment, Alloc<> >, InfixSegment>; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:647:12: required from 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:624:58: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:685:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1348:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment, Alloc<> >, InfixSegment>&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar_extension.h:396:13: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:633:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:687:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1354:27: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment, Alloc<> >, InfixSegment>&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar_extension.h:396:13: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:633:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:687:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = Segment, Alloc<> >, InfixSegment>; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:647:12: required from 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:624:58: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:687:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1348:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment, Alloc<> >, InfixSegment>&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar_extension.h:396:13: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:633:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:689:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1354:27: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment, Alloc<> >, InfixSegment>&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar_extension.h:396:13: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:633:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:689:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = Segment, Alloc<> >, InfixSegment>; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:647:12: required from 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:624:58: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:689:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1348:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment, Alloc<> >, InfixSegment>&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar_extension.h:396:13: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:633:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:691:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1354:27: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment, Alloc<> >, InfixSegment>&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar_extension.h:396:13: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:633:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:691:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = Segment, Alloc<> >, InfixSegment>; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:647:12: required from 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:624:58: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:691:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1348:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment, Alloc<> >, InfixSegment>&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar_extension.h:396:13: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:633:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:693:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1354:27: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment, Alloc<> >, InfixSegment>&; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet, Alloc<> >, InfixSegment>, Owner<> >&; TSource = Segment, Alloc<> >, InfixSegment>&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar_extension.h:396:13: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:633:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:693:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = Segment, Alloc<> >, InfixSegment>; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:647:12: required from 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:624:58: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:693:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment >, seqan::InfixSegment>*; TParam = seqan::Segment >, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment >, InfixSegment>*; TParam = Segment >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1348:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment >, seqan::InfixSegment>&; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment >, InfixSegment>&; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment >, InfixSegment>; TString2 = Segment >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet >, InfixSegment>, Owner<> >&; TSource = Segment >, InfixSegment>&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar_extension.h:396:13: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:633:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:695:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment >, seqan::InfixSegment>*; TParam = const seqan::Segment >, seqan::InfixSegment>&]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment >, InfixSegment>*; TParam = const Segment >, InfixSegment>&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1354:27: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment >, seqan::InfixSegment>&; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(String&, TValue&&, Tag) [with TTargetValue = Segment >, InfixSegment>; TTargetSpec = Alloc<>; TValue = const Segment >, InfixSegment>&; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment >, InfixSegment>; TString2 = Segment >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = StringSet >, InfixSegment>, Owner<> >&; TSource = Segment >, InfixSegment>&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar_extension.h:396:13: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:633:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:56:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:695:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = Segment >, InfixSegment>; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:647:12: required from 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment >, InfixSegment>, InfixSegment>; TIterator = char*; TSpec = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:624:58: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_<>; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_<>; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_<>; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:458:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.h:705:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:64:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:174:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:655:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar/stellar.cpp:695:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment >, seqan::InfixSegment>]' 143 | operator = (Segment const & source) | ^~~~~~~~ [ 95%] Linking CXX executable ../../bin/stellar cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/stellar && /usr/bin/cmake -E cmake_link_script CMakeFiles/stellar.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/stellar.dir/stellar.cpp.o -o ../../bin/stellar -lrt In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function 'pop': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from '_goUp' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_wotd.h:915:22: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function '_goUp': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from '_toText' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function '_toText': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 95%] Built target stellar make -f apps/tree_recon/CMakeFiles/tree_recon.dir/build.make apps/tree_recon/CMakeFiles/tree_recon.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/tree_recon /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/tree_recon /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/tree_recon/CMakeFiles/tree_recon.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/tree_recon/CMakeFiles/tree_recon.dir/build.make apps/tree_recon/CMakeFiles/tree_recon.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 95%] Building CXX object apps/tree_recon/CMakeFiles/tree_recon.dir/tree_recon.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/tree_recon && /usr/bin/g++ -DSEQAN_APP_VERSION=\"1.4.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/tree_recon/CMakeFiles/tree_recon.dir/tree_recon.cpp.o -MF CMakeFiles/tree_recon.dir/tree_recon.cpp.o.d -o CMakeFiles/tree_recon.dir/tree_recon.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/tree_recon/tree_recon.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:62, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score.h:43, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_msa.h:37, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/tree_recon/tree_recon.cpp:19: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/debug_test_system.h:150, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/tree_recon/tree_recon.cpp:18: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_msa.h:39: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_msa.h:41: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_msa.h:44: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_msa/graph_align_tcoffee_base.h:304:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 304 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:119: In function 'seqan::lexicalCast > >(seqan::String > const&)unsigned long', inlined from 'readPhylipMatrix >, seqan::String >, seqan::Alloc >, seqan::Iter, std::char_traits >, seqan::StreamIterator > > >(seqan::String >&, seqan::String >, seqan::Alloc >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&)void' at /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/tree_recon/tree_recon.cpp:54:40: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:255:9: warning: 'target' may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h: In function 'readPhylipMatrix >, seqan::String >, seqan::Alloc >, seqan::Iter, std::char_traits >, seqan::StreamIterator > > >(seqan::String >&, seqan::String >, seqan::Alloc >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&)void': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type 'const long unsigned int &' to 'seqan::BadLexicalCast::BadLexicalCast > >(unsigned long const&, seqan::String > const&)' declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h:253:13: note: 'target' declared here 253 | TTarget target; | ^~~~~~ [ 96%] Linking CXX executable ../../bin/tree_recon cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/tree_recon && /usr/bin/cmake -E cmake_link_script CMakeFiles/tree_recon.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/tree_recon.dir/tree_recon.cpp.o -o ../../bin/tree_recon -lrt In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from '_toText' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function '_toText': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 96%] Built target tree_recon make -f apps/yara/CMakeFiles/yara_indexer.dir/build.make apps/yara/CMakeFiles/yara_indexer.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/yara /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/yara/CMakeFiles/yara_indexer.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/yara/CMakeFiles/yara_indexer.dir/build.make apps/yara/CMakeFiles/yara_indexer.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 96%] Building CXX object apps/yara/CMakeFiles/yara_indexer.dir/indexer.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/yara && /usr/bin/g++ -DSEQAN_APP_VERSION=\"0.9.11\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/yara/CMakeFiles/yara_indexer.dir/indexer.cpp.o -MF CMakeFiles/yara_indexer.dir/indexer.cpp.o.d -o CMakeFiles/yara_indexer.dir/indexer.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:42, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:50: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/debug_test_system.h:150, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:48: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find.h:47, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:46: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:47: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:76: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:91: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:102: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:107: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:110: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:111: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:114: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:121: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:125: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:131: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:188: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/store_seqs.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:56: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:50, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/bam_sam.h:39, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:55: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score.h:43, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find.h:45: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:49: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:94: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/store_seqs.h:209:34: required from 'void trimSeqNames(SeqStore&) [with TSpec = void; TConfig = YaraContigsConfig<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:201:21: required from 'void loadContigs(YaraIndexer&) [with TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:357:16: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:96: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_iterator.h:80, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:86: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:195:14: required from 'void loadContigs(YaraIndexer&) [with TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:357:16: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:195:14: required from 'void loadContigs(YaraIndexer&) [with TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:357:16: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/store_seqs.h:209:34: required from 'void trimSeqNames(SeqStore&) [with TSpec = void; TConfig = YaraContigsConfig<>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:201:21: required from 'void loadContigs(YaraIndexer&) [with TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:357:16: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:195:14: required from 'void loadContigs(YaraIndexer&) [with TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:357:16: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:195:14: required from 'void loadContigs(YaraIndexer&) [with TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:357:16: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:195:14: required from 'void loadContigs(YaraIndexer&) [with TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:357:16: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, External > >; TString = String, Alloc<> >; TSpec = Owner > > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String >, External > >; TText = StringSet, Alloc<> >, Owner > > > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:198:34: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > > > >, seqan::FMIndex > > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:267:53: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = unsigned int; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:303:55: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:316:42: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned char; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:333:27: required from 'void saveIndex(YaraIndexer&) [with TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:360:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_aggregate.h:58, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:98: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, External > >; TString = String, Alloc<> >; TSpec = Owner > > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, False) [with TSA = String >, External > >; TText = StringSet, Alloc<> >, Owner > > > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:198:34: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > > > >, seqan::FMIndex > > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:267:53: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TContigsSum = unsigned int; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:303:55: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:316:42: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = short unsigned int; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:337:28: required from 'void saveIndex(YaraIndexer&) [with TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:360:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:56: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 5, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:414:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > > > >, seqan::FMIndex > > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:267:53: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = unsigned int; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:303:55: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:316:42: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned char; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:333:27: required from 'void saveIndex(YaraIndexer&) [with TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:360:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 5, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 4, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:415:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > > > >, seqan::FMIndex > > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:267:53: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = unsigned int; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:303:55: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:316:42: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned char; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:333:27: required from 'void saveIndex(YaraIndexer&) [with TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:360:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 4, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:432:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > > > >, seqan::FMIndex > > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:267:53: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = unsigned int; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:303:55: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:316:42: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned char; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:333:27: required from 'void saveIndex(YaraIndexer&) [with TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:360:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:443:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > > > >, seqan::FMIndex > > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:267:53: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = unsigned int; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:303:55: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:316:42: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned char; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:333:27: required from 'void saveIndex(YaraIndexer&) [with TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:360:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:243:12: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > > > >, seqan::FMIndex > > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:267:53: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = unsigned int; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:303:55: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:316:42: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned char; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:333:27: required from 'void saveIndex(YaraIndexer&) [with TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:360:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 5, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:414:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > > > >, seqan::FMIndex > > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:267:53: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TContigsSum = unsigned int; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:303:55: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:316:42: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = short unsigned int; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:337:28: required from 'void saveIndex(YaraIndexer&) [with TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:360:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 5, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 4, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:415:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > > > >, seqan::FMIndex > > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:267:53: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TContigsSum = unsigned int; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:303:55: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:316:42: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = short unsigned int; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:337:28: required from 'void saveIndex(YaraIndexer&) [with TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:360:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 4, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:432:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > > > >, seqan::FMIndex > > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:267:53: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TContigsSum = unsigned int; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:303:55: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:316:42: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = short unsigned int; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:337:28: required from 'void saveIndex(YaraIndexer&) [with TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:360:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:443:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:107:22: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > > > >, seqan::FMIndex > > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:267:53: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TContigsSum = unsigned int; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:303:55: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:316:42: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = short unsigned int; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:337:28: required from 'void saveIndex(YaraIndexer&) [with TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:360:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > > > >, seqan::FMIndex > > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:267:53: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = unsigned int; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:303:55: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:316:42: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned char; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:333:27: required from 'void saveIndex(YaraIndexer&) [with TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:360:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > > > >, seqan::FMIndex > > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:267:53: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = unsigned int; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:303:55: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:316:42: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned char; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:333:27: required from 'void saveIndex(YaraIndexer&) [with TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:360:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > > > >, seqan::FMIndex > > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:267:53: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TContigsSum = unsigned int; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:303:55: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:316:42: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = short unsigned int; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:337:28: required from 'void saveIndex(YaraIndexer&) [with TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:360:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > > > >, seqan::FMIndex > > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:267:53: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TContigsSum = unsigned int; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:303:55: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:316:42: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = short unsigned int; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:337:28: required from 'void saveIndex(YaraIndexer&) [with TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:360:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > > > >, seqan::FMIndex > > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:267:53: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = unsigned int; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:303:55: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:316:42: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned char; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:333:27: required from 'void saveIndex(YaraIndexer&) [with TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:360:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > > > >, seqan::FMIndex > > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:267:53: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = unsigned int; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:303:55: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:316:42: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned char; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:333:27: required from 'void saveIndex(YaraIndexer&) [with TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:360:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > > > >, seqan::FMIndex > > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:267:53: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = unsigned int; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:303:55: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:316:42: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned char; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:333:27: required from 'void saveIndex(YaraIndexer&) [with TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:360:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > > > >, seqan::FMIndex > > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:267:53: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = unsigned int; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:303:55: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:316:42: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned char; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:333:27: required from 'void saveIndex(YaraIndexer&) [with TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:360:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:173:12: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > > > >, seqan::FMIndex > > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:267:53: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = unsigned int; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:303:55: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:316:42: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned char; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:333:27: required from 'void saveIndex(YaraIndexer&) [with TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:360:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:312:20: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > > > >, seqan::FMIndex > > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:267:53: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = unsigned int; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:303:55: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:316:42: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned char; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:333:27: required from 'void saveIndex(YaraIndexer&) [with TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:360:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:312:20: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > > > >, seqan::FMIndex > > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:267:53: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = unsigned int; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:303:55: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:316:42: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned char; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:333:27: required from 'void saveIndex(YaraIndexer&) [with TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:360:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = SorterSpec, Tuple, Tag >, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender3.h:123:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, long unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:218:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:376:49: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > > > >, seqan::FMIndex > > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:267:53: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = unsigned int; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:303:55: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:316:42: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned char; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:333:27: required from 'void saveIndex(YaraIndexer&) [with TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:360:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:447:21: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:465:13: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > > > >, seqan::FMIndex > > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:267:53: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = unsigned int; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:303:55: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:316:42: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned char; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:333:27: required from 'void saveIndex(YaraIndexer&) [with TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:360:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:447:21: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:465:13: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > > > >, seqan::FMIndex > > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:267:53: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TContigsSum = unsigned int; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:303:55: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:316:42: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = short unsigned int; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:337:28: required from 'void saveIndex(YaraIndexer&) [with TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:360:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, long unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:218:20: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > > > >, seqan::FMIndex > > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:267:53: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = unsigned int; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:303:55: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:316:42: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned char; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:333:27: required from 'void saveIndex(YaraIndexer&) [with TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:360:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, long unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:218:20: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > > > >, seqan::FMIndex > > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:267:53: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = unsigned int; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:303:55: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:316:42: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned char; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:333:27: required from 'void saveIndex(YaraIndexer&) [with TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:360:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended, Tuple >, Tag >, long unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:302:21: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:320:13: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > > > >, seqan::FMIndex > > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:267:53: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = unsigned int; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:303:55: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:316:42: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned char; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:333:27: required from 'void saveIndex(YaraIndexer&) [with TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:360:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple, Tag >; TConfig = MapperConfigSize<_skew3NMapExtended, Tuple, Tag >, long unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger3.h:111:17: required from 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:329:13: [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > > > >, seqan::FMIndex > > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:267:53: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = unsigned int; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:303:55: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:316:42: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned char; TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:333:27: required from 'void saveIndex(YaraIndexer&) [with TSpec = void; TConfig = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/indexer.cpp:360:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ [ 98%] Linking CXX executable ../../bin/yara_indexer cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/yara && /usr/bin/cmake -E cmake_link_script CMakeFiles/yara_indexer.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/yara_indexer.dir/indexer.cpp.o -o ../../bin/yara_indexer -lrt -lz -lbz2 In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from '_toText' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function '_toText': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:280:21: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:290:21: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'append' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1330:13: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function 'append': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:424:21: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:433:21: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'append' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1330:13: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function 'append': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:424:21: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:433:21: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:328:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'process.isra': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:328:26: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'process.isra': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++.isra' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger3.h:127:17: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function 'operator++.isra': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 98%] Built target yara_indexer make -f apps/yara/CMakeFiles/yara_mapper.dir/build.make apps/yara/CMakeFiles/yara_mapper.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/yara /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/yara/CMakeFiles/yara_mapper.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make -f apps/yara/CMakeFiles/yara_mapper.dir/build.make apps/yara/CMakeFiles/yara_mapper.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 98%] Building CXX object apps/yara/CMakeFiles/yara_mapper.dir/mapper.cpp.o cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/yara && /usr/bin/g++ -DSEQAN_APP_VERSION=\"0.9.11\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-seqan-v2.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/yara/CMakeFiles/yara_mapper.dir/mapper.cpp.o -MF CMakeFiles/yara_mapper.dir/mapper.cpp.o.d -o CMakeFiles/yara_mapper.dir/mapper.cpp.o -c /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:59, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:42, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:59: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:79:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 79 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/random:42, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:51: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:113:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 113 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:147:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 147 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:219:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 219 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:228:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 228 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:237:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 237 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:246:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 246 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:255:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 255 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:264:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 264 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:276:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 276 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_functors.h:287:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 287 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:79: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:393:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 393 | struct PosLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file.h:92: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/file/string_external.h:1338:41: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1338 | struct testIODone : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:45:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:54:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pipe_filter.h:63:35: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:351:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 351 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_mapper.h:457:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 457 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:42:46: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:57:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:206:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 206 | struct insertBucket : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/pipe/pool_sorter.h:321:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 321 | struct insertBucket : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:48, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find.h:47, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:46: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:325:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 325 | public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/graph_algorithms/kruskal.h:63:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct LessPairI1_ : public std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:47: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/misc/set.h:373:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:76: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:340:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | struct FibreLess: public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:646:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 646 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_base.h:660:68: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 660 | struct FunctorGlobalize : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:91: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:666:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 666 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:714:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 714 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:782:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 782 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:851:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 851 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:885:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 885 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:933:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 933 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1814:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1814 | struct _qgramComp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h:1833:13: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1833 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:102: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:46:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h:85:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:107: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:110: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:110:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h:143:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:111: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:114: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h:141:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:121: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:59:38: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h:164:43: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:125: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_bwt.h:144:44: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:131: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h:556:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 556 | public std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index.h:188: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/index/repeat_base.h:120:38: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 120 | struct RepeatLess_ : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:52, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/store_seqs.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:69: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fasta_fastq.h:221:39: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 221 | struct QualityExtractor : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align.h:88, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io.h:50, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/bam_sam.h:39, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:55: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:224:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gap_anchor.h:234:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 234 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io/fai_index.h:41, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/seq_io.h:73: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:352:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 352 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:362:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 362 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:372:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 372 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:382:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:392:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 392 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_align.h:402:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 402 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:2155:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2155 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:91: /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In function 'void rankMatches(Mapper&, const TReadSeqs&)': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_function.h:1438: /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream.h:75, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/score.h:43, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find.h:45: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:98, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:58: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:75: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Sam_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:95: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const char*; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Bam_]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_index_bai.h:699:14: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of 'void rankMatches(Mapper&, const TReadSeqs&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1326:16: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; Strata = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18: required from 'void mapReads(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17: required from 'void runMapper(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14: required from 'void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of 'void rankMatches(Mapper&, const TReadSeqs&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1326:16: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; Strata = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18: required from 'void mapReads(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17: required from 'void runMapper(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14: required from 'void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = long unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:351:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of 'void rankMatches(Mapper&, const TReadSeqs&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1326:16: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; Strata = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18: required from 'void mapReads(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17: required from 'void runMapper(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14: required from 'void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TContigsSum = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:381:34: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of 'void rankMatches(Mapper&, const TReadSeqs&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1326:16: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; Strata = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18: required from 'void mapReads(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17: required from 'void runMapper(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14: required from 'void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TContigsSum = long unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:351:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:381:34: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of 'void rankMatches(Mapper&, const TReadSeqs&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1267:16: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, All) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; All = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18: required from 'void mapReads(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17: required from 'void runMapper(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14: required from 'void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:402:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of 'void rankMatches(Mapper&, const TReadSeqs&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1267:16: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, All) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; All = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18: required from 'void mapReads(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17: required from 'void runMapper(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14: required from 'void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = long unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:351:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:402:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of 'void rankMatches(Mapper&, const TReadSeqs&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1267:16: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, All) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; All = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18: required from 'void mapReads(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17: required from 'void runMapper(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14: required from 'void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TContigsSum = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:381:34: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:402:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of 'void rankMatches(Mapper&, const TReadSeqs&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1267:16: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, All) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; All = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18: required from 'void mapReads(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17: required from 'void runMapper(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14: required from 'void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TContigsSum = long unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:351:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:381:34: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:402:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of 'void rankMatches(Mapper&, const TReadSeqs&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1326:16: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; Strata = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18: required from 'void mapReads(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17: required from 'void runMapper(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14: required from 'void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of 'void rankMatches(Mapper&, const TReadSeqs&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1326:16: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; Strata = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18: required from 'void mapReads(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17: required from 'void runMapper(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14: required from 'void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = long unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:351:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of 'void rankMatches(Mapper&, const TReadSeqs&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1326:16: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; Strata = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18: required from 'void mapReads(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17: required from 'void runMapper(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14: required from 'void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TContigsSum = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:381:34: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of 'void rankMatches(Mapper&, const TReadSeqs&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1326:16: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; Strata = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18: required from 'void mapReads(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17: required from 'void runMapper(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14: required from 'void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TContigsSum = long unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:351:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:381:34: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of 'void rankMatches(Mapper&, const TReadSeqs&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1267:16: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, All) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; All = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18: required from 'void mapReads(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17: required from 'void runMapper(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14: required from 'void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:402:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of 'void rankMatches(Mapper&, const TReadSeqs&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1267:16: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, All) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; All = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18: required from 'void mapReads(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17: required from 'void runMapper(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14: required from 'void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = long unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:351:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:402:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of 'void rankMatches(Mapper&, const TReadSeqs&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1267:16: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, All) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; All = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18: required from 'void mapReads(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17: required from 'void runMapper(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14: required from 'void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TContigsSum = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:381:34: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:402:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of 'void rankMatches(Mapper&, const TReadSeqs&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1267:16: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, All) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; All = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18: required from 'void mapReads(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17: required from 'void runMapper(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14: required from 'void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TContigsSum = long unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:351:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:381:34: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:402:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of 'void rankMatches(Mapper&, const TReadSeqs&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1326:16: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; Strata = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18: required from 'void mapReads(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17: required from 'void runMapper(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14: required from 'void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:425:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of 'void rankMatches(Mapper&, const TReadSeqs&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1326:16: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; Strata = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18: required from 'void mapReads(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17: required from 'void runMapper(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14: required from 'void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = long unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:351:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:425:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of 'void rankMatches(Mapper&, const TReadSeqs&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1326:16: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; Strata = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18: required from 'void mapReads(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17: required from 'void runMapper(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14: required from 'void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TContigsSum = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:381:34: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:425:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of 'void rankMatches(Mapper&, const TReadSeqs&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1326:16: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; Strata = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18: required from 'void mapReads(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17: required from 'void runMapper(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14: required from 'void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TContigsSum = long unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:351:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:381:34: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:425:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of 'void rankMatches(Mapper&, const TReadSeqs&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1267:16: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, All) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; All = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18: required from 'void mapReads(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17: required from 'void runMapper(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14: required from 'void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:402:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:425:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of 'void rankMatches(Mapper&, const TReadSeqs&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1267:16: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, All) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; All = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18: required from 'void mapReads(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17: required from 'void runMapper(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14: required from 'void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = long unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:351:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:402:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:425:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of 'void rankMatches(Mapper&, const TReadSeqs&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1267:16: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, All) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; All = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18: required from 'void mapReads(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17: required from 'void runMapper(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14: required from 'void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TContigsSum = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:381:34: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:402:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:425:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of 'void rankMatches(Mapper&, const TReadSeqs&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1267:16: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, All) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; All = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18: required from 'void mapReads(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17: required from 'void runMapper(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14: required from 'void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TContigsSum = long unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:351:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:381:34: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:402:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:425:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of 'void rankMatches(Mapper&, const TReadSeqs&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1326:16: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; Strata = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18: required from 'void mapReads(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17: required from 'void runMapper(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14: required from 'void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:425:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of 'void rankMatches(Mapper&, const TReadSeqs&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1326:16: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; Strata = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18: required from 'void mapReads(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17: required from 'void runMapper(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14: required from 'void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = long unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:351:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:425:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of 'void rankMatches(Mapper&, const TReadSeqs&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1326:16: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; Strata = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18: required from 'void mapReads(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17: required from 'void runMapper(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14: required from 'void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TContigsSum = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:381:34: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:425:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of 'void rankMatches(Mapper&, const TReadSeqs&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1326:16: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; Strata = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18: required from 'void mapReads(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17: required from 'void runMapper(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14: required from 'void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TContigsSum = long unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:351:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:381:34: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:425:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of 'void rankMatches(Mapper&, const TReadSeqs&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1267:16: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, All) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; All = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18: required from 'void mapReads(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17: required from 'void runMapper(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14: required from 'void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:402:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:425:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of 'void rankMatches(Mapper&, const TReadSeqs&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1267:16: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, All) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; All = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18: required from 'void mapReads(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17: required from 'void runMapper(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14: required from 'void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = long unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:351:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:402:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:425:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of 'void rankMatches(Mapper&, const TReadSeqs&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1267:16: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, All) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; All = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18: required from 'void mapReads(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17: required from 'void runMapper(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14: required from 'void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TContigsSum = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:381:34: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:402:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:425:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of 'void rankMatches(Mapper&, const TReadSeqs&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1267:16: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, All) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; All = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18: required from 'void mapReads(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17: required from 'void runMapper(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14: required from 'void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TContigsSum = long unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:351:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:381:34: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:402:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:425:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:946:46: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 946 | removeIf(libraryLengths, std::bind2nd(std::greater(), 6.0 * libraryMedian), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:958:61: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus; _Tp = float]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 958 | transform(libraryDiffs, libraryLengths, std::bind2nd(std::minus(), libraryMean), typename TTraits::TThreading()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of 'void _verifyMatchesImpl(Mapper&, PairedEnd) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>; PairedEnd = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1081:23: required from 'void verifyMatches(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1328:22: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; Strata = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18: required from 'void mapReads(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17: required from 'void runMapper(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14: required from 'void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1109:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 1109 | setHost(me.matesSetByCoord, me.matesByCoord); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:97: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >, seqan::Alloc<> >]' 129 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:140: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note: initializing argument 2 of 'void seqan::setHost(StringSet >&, typename Parameter_::Type) [with THost = Segment >, Alloc<> >, SuffixSegment>; TSpec = Segment >, Alloc<> >, SuffixSegment>; typename Parameter_::Type = Segment >, Alloc<> >, SuffixSegment>]' 294 | inline void setHost(StringSet > & me, typename Parameter_::Type host) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of 'void _verifyMatchesImpl(Mapper&, PairedEnd) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>; PairedEnd = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1081:23: required from 'void verifyMatches(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1328:22: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; Strata = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18: required from 'void mapReads(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17: required from 'void runMapper(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14: required from 'void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = long unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:351:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1109:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 1109 | setHost(me.matesSetByCoord, me.matesByCoord); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >, seqan::Alloc<> >]' 129 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note: initializing argument 2 of 'void seqan::setHost(StringSet >&, typename Parameter_::Type) [with THost = Segment >, Alloc<> >, SuffixSegment>; TSpec = Segment >, Alloc<> >, SuffixSegment>; typename Parameter_::Type = Segment >, Alloc<> >, SuffixSegment>]' 294 | inline void setHost(StringSet > & me, typename Parameter_::Type host) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of 'void _verifyMatchesImpl(Mapper&, PairedEnd) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>; PairedEnd = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1081:23: required from 'void verifyMatches(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1328:22: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; Strata = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18: required from 'void mapReads(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17: required from 'void runMapper(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14: required from 'void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TContigsSum = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:381:34: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1109:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 1109 | setHost(me.matesSetByCoord, me.matesByCoord); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >, seqan::Alloc<> >]' 129 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note: initializing argument 2 of 'void seqan::setHost(StringSet >&, typename Parameter_::Type) [with THost = Segment >, Alloc<> >, SuffixSegment>; TSpec = Segment >, Alloc<> >, SuffixSegment>; typename Parameter_::Type = Segment >, Alloc<> >, SuffixSegment>]' 294 | inline void setHost(StringSet > & me, typename Parameter_::Type host) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of 'void _verifyMatchesImpl(Mapper&, PairedEnd) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>; PairedEnd = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1081:23: required from 'void verifyMatches(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1328:22: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; Strata = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18: required from 'void mapReads(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17: required from 'void runMapper(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14: required from 'void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TContigsSum = long unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:351:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:381:34: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1109:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 1109 | setHost(me.matesSetByCoord, me.matesByCoord); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >, seqan::Alloc<> >]' 129 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note: initializing argument 2 of 'void seqan::setHost(StringSet >&, typename Parameter_::Type) [with THost = Segment >, Alloc<> >, SuffixSegment>; TSpec = Segment >, Alloc<> >, SuffixSegment>; typename Parameter_::Type = Segment >, Alloc<> >, SuffixSegment>]' 294 | inline void setHost(StringSet > & me, typename Parameter_::Type host) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of 'void _verifyMatchesImpl(Mapper&, PairedEnd) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>; PairedEnd = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1081:23: required from 'void verifyMatches(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1269:22: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, All) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; All = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18: required from 'void mapReads(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17: required from 'void runMapper(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14: required from 'void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:402:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1109:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 1109 | setHost(me.matesSetByCoord, me.matesByCoord); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >, seqan::Alloc<> >]' 129 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note: initializing argument 2 of 'void seqan::setHost(StringSet >&, typename Parameter_::Type) [with THost = Segment >, Alloc<> >, SuffixSegment>; TSpec = Segment >, Alloc<> >, SuffixSegment>; typename Parameter_::Type = Segment >, Alloc<> >, SuffixSegment>]' 294 | inline void setHost(StringSet > & me, typename Parameter_::Type host) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of 'void _verifyMatchesImpl(Mapper&, PairedEnd) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>; PairedEnd = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1081:23: required from 'void verifyMatches(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1269:22: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, All) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; All = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18: required from 'void mapReads(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17: required from 'void runMapper(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14: required from 'void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = long unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:351:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:402:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1109:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 1109 | setHost(me.matesSetByCoord, me.matesByCoord); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >, seqan::Alloc<> >]' 129 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note: initializing argument 2 of 'void seqan::setHost(StringSet >&, typename Parameter_::Type) [with THost = Segment >, Alloc<> >, SuffixSegment>; TSpec = Segment >, Alloc<> >, SuffixSegment>; typename Parameter_::Type = Segment >, Alloc<> >, SuffixSegment>]' 294 | inline void setHost(StringSet > & me, typename Parameter_::Type host) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of 'void _verifyMatchesImpl(Mapper&, PairedEnd) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>; PairedEnd = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1081:23: required from 'void verifyMatches(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1269:22: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, All) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; All = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18: required from 'void mapReads(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17: required from 'void runMapper(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14: required from 'void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TContigsSum = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:381:34: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:402:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1109:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 1109 | setHost(me.matesSetByCoord, me.matesByCoord); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >, seqan::Alloc<> >]' 129 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note: initializing argument 2 of 'void seqan::setHost(StringSet >&, typename Parameter_::Type) [with THost = Segment >, Alloc<> >, SuffixSegment>; TSpec = Segment >, Alloc<> >, SuffixSegment>; typename Parameter_::Type = Segment >, Alloc<> >, SuffixSegment>]' 294 | inline void setHost(StringSet > & me, typename Parameter_::Type host) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of 'void _verifyMatchesImpl(Mapper&, PairedEnd) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>; PairedEnd = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1081:23: required from 'void verifyMatches(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1269:22: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, All) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; All = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18: required from 'void mapReads(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17: required from 'void runMapper(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14: required from 'void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TContigsSum = long unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:351:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:381:34: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:402:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1109:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 1109 | setHost(me.matesSetByCoord, me.matesByCoord); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >, seqan::Alloc<> >]' 129 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note: initializing argument 2 of 'void seqan::setHost(StringSet >&, typename Parameter_::Type) [with THost = Segment >, Alloc<> >, SuffixSegment>; TSpec = Segment >, Alloc<> >, SuffixSegment>; typename Parameter_::Type = Segment >, Alloc<> >, SuffixSegment>]' 294 | inline void setHost(StringSet > & me, typename Parameter_::Type host) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of 'void _verifyMatchesImpl(Mapper&, PairedEnd) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>; PairedEnd = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1081:23: required from 'void verifyMatches(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1328:22: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; Strata = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18: required from 'void mapReads(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17: required from 'void runMapper(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14: required from 'void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:425:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1109:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 1109 | setHost(me.matesSetByCoord, me.matesByCoord); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >, seqan::Alloc<> >]' 129 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note: initializing argument 2 of 'void seqan::setHost(StringSet >&, typename Parameter_::Type) [with THost = Segment >, Alloc<> >, SuffixSegment>; TSpec = Segment >, Alloc<> >, SuffixSegment>; typename Parameter_::Type = Segment >, Alloc<> >, SuffixSegment>]' 294 | inline void setHost(StringSet > & me, typename Parameter_::Type host) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of 'void _verifyMatchesImpl(Mapper&, PairedEnd) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>; PairedEnd = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1081:23: required from 'void verifyMatches(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1328:22: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; Strata = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18: required from 'void mapReads(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17: required from 'void runMapper(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14: required from 'void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = long unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:351:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:425:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1109:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 1109 | setHost(me.matesSetByCoord, me.matesByCoord); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >, seqan::Alloc<> >]' 129 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note: initializing argument 2 of 'void seqan::setHost(StringSet >&, typename Parameter_::Type) [with THost = Segment >, Alloc<> >, SuffixSegment>; TSpec = Segment >, Alloc<> >, SuffixSegment>; typename Parameter_::Type = Segment >, Alloc<> >, SuffixSegment>]' 294 | inline void setHost(StringSet > & me, typename Parameter_::Type host) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of 'void _verifyMatchesImpl(Mapper&, PairedEnd) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>; PairedEnd = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1081:23: required from 'void verifyMatches(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1328:22: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; Strata = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18: required from 'void mapReads(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17: required from 'void runMapper(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14: required from 'void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TContigsSum = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:381:34: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:425:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1109:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 1109 | setHost(me.matesSetByCoord, me.matesByCoord); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >, seqan::Alloc<> >]' 129 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note: initializing argument 2 of 'void seqan::setHost(StringSet >&, typename Parameter_::Type) [with THost = Segment >, Alloc<> >, SuffixSegment>; TSpec = Segment >, Alloc<> >, SuffixSegment>; typename Parameter_::Type = Segment >, Alloc<> >, SuffixSegment>]' 294 | inline void setHost(StringSet > & me, typename Parameter_::Type host) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of 'void _verifyMatchesImpl(Mapper&, PairedEnd) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>; PairedEnd = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1081:23: required from 'void verifyMatches(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1328:22: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; Strata = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18: required from 'void mapReads(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17: required from 'void runMapper(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14: required from 'void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TContigsSum = long unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:351:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:381:34: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:425:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1109:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 1109 | setHost(me.matesSetByCoord, me.matesByCoord); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >, seqan::Alloc<> >]' 129 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note: initializing argument 2 of 'void seqan::setHost(StringSet >&, typename Parameter_::Type) [with THost = Segment >, Alloc<> >, SuffixSegment>; TSpec = Segment >, Alloc<> >, SuffixSegment>; typename Parameter_::Type = Segment >, Alloc<> >, SuffixSegment>]' 294 | inline void setHost(StringSet > & me, typename Parameter_::Type host) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of 'void _verifyMatchesImpl(Mapper&, PairedEnd) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>; PairedEnd = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1081:23: required from 'void verifyMatches(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1269:22: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, All) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; All = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18: required from 'void mapReads(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17: required from 'void runMapper(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14: required from 'void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:402:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:425:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1109:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 1109 | setHost(me.matesSetByCoord, me.matesByCoord); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >, seqan::Alloc<> >]' 129 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note: initializing argument 2 of 'void seqan::setHost(StringSet >&, typename Parameter_::Type) [with THost = Segment >, Alloc<> >, SuffixSegment>; TSpec = Segment >, Alloc<> >, SuffixSegment>; typename Parameter_::Type = Segment >, Alloc<> >, SuffixSegment>]' 294 | inline void setHost(StringSet > & me, typename Parameter_::Type host) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of 'void _verifyMatchesImpl(Mapper&, PairedEnd) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>; PairedEnd = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1081:23: required from 'void verifyMatches(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1269:22: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, All) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; All = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18: required from 'void mapReads(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17: required from 'void runMapper(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14: required from 'void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = long unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:351:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:402:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:425:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1109:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 1109 | setHost(me.matesSetByCoord, me.matesByCoord); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >, seqan::Alloc<> >]' 129 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note: initializing argument 2 of 'void seqan::setHost(StringSet >&, typename Parameter_::Type) [with THost = Segment >, Alloc<> >, SuffixSegment>; TSpec = Segment >, Alloc<> >, SuffixSegment>; typename Parameter_::Type = Segment >, Alloc<> >, SuffixSegment>]' 294 | inline void setHost(StringSet > & me, typename Parameter_::Type host) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of 'void _verifyMatchesImpl(Mapper&, PairedEnd) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>; PairedEnd = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1081:23: required from 'void verifyMatches(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1269:22: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, All) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; All = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18: required from 'void mapReads(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17: required from 'void runMapper(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14: required from 'void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TContigsSum = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:381:34: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:402:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:425:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1109:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 1109 | setHost(me.matesSetByCoord, me.matesByCoord); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >, seqan::Alloc<> >]' 129 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note: initializing argument 2 of 'void seqan::setHost(StringSet >&, typename Parameter_::Type) [with THost = Segment >, Alloc<> >, SuffixSegment>; TSpec = Segment >, Alloc<> >, SuffixSegment>; typename Parameter_::Type = Segment >, Alloc<> >, SuffixSegment>]' 294 | inline void setHost(StringSet > & me, typename Parameter_::Type host) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h: In instantiation of 'void _verifyMatchesImpl(Mapper&, PairedEnd) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>; PairedEnd = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1081:23: required from 'void verifyMatches(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1269:22: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, All) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; All = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18: required from 'void mapReads(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17: required from 'void runMapper(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14: required from 'void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TContigsSum = long unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:351:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:381:34: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:402:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:425:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1109:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 1109 | setHost(me.matesSetByCoord, me.matesByCoord); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >, seqan::Alloc<> >]' 129 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:294:94: note: initializing argument 2 of 'void seqan::setHost(StringSet >&, typename Parameter_::Type) [with THost = Segment >, Alloc<> >, SuffixSegment>; TSpec = Segment >, Alloc<> >, SuffixSegment>; typename Parameter_::Type = Segment >, Alloc<> >, SuffixSegment>]' 294 | inline void setHost(StringSet > & me, typename Parameter_::Type host) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_smart_pointer.h:47, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_allocator.h:46, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:74, from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:57: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(const T&) [with T = Segment >, InfixSegment>; typename Parameter_::Type = Segment >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:205:36: required from 'typename seqan::Parameter_::Type seqan::cargo(const ModifiedString >&) [with THost = String >, Alloc<> >; TPositions = Segment >, InfixSegment>; typename Parameter_::Type = Segment >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:309:23: required from 'bool seqan::empty(const ModifiedString >&) [with THost = String >, Alloc<> >; TPositions = Segment >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:858:18: required from 'void rankMatches(Mapper&, const TReadSeqs&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1326:16: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; Strata = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18: required from 'void mapReads(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_type.h:365:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 365 | return _object; | ^~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:96: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String >, Alloc<> >; TSpec = SuffixSegment; typename Pointer_ >::Type = Segment >, Alloc<> >, SuffixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:296:30: required from 'void seqan::setHost(StringSet >&, typename Parameter_::Type) [with THost = Segment >, Alloc<> >, SuffixSegment>; TSpec = Segment >, Alloc<> >, SuffixSegment>; typename Parameter_::Type = Segment >, Alloc<> >, SuffixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1109:12: required from 'void _verifyMatchesImpl(Mapper&, PairedEnd) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>; PairedEnd = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1081:23: required from 'void verifyMatches(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1328:22: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; Strata = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18: required from 'void mapReads(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >, seqan::Alloc<> >]' 129 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String >, Alloc<> >; TSpec = SuffixSegment; typename Pointer_ >::Type = Segment >, Alloc<> >, SuffixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:296:30: required from 'void seqan::setHost(StringSet >&, typename Parameter_::Type) [with THost = Segment >, Alloc<> >, SuffixSegment>; TSpec = Segment >, Alloc<> >, SuffixSegment>; typename Parameter_::Type = Segment >, Alloc<> >, SuffixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1109:12: required from 'void _verifyMatchesImpl(Mapper&, PairedEnd) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>; PairedEnd = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1081:23: required from 'void verifyMatches(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1328:22: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; Strata = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18: required from 'void mapReads(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:351:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >, seqan::Alloc<> >]' 129 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String >, Alloc<> >; TSpec = SuffixSegment; typename Pointer_ >::Type = Segment >, Alloc<> >, SuffixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:296:30: required from 'void seqan::setHost(StringSet >&, typename Parameter_::Type) [with THost = Segment >, Alloc<> >, SuffixSegment>; TSpec = Segment >, Alloc<> >, SuffixSegment>; typename Parameter_::Type = Segment >, Alloc<> >, SuffixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1109:12: required from 'void _verifyMatchesImpl(Mapper&, PairedEnd) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>; PairedEnd = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1081:23: required from 'void verifyMatches(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1328:22: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; Strata = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18: required from 'void mapReads(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:381:34: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >, seqan::Alloc<> >]' 129 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String >, Alloc<> >; TSpec = SuffixSegment; typename Pointer_ >::Type = Segment >, Alloc<> >, SuffixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:296:30: required from 'void seqan::setHost(StringSet >&, typename Parameter_::Type) [with THost = Segment >, Alloc<> >, SuffixSegment>; TSpec = Segment >, Alloc<> >, SuffixSegment>; typename Parameter_::Type = Segment >, Alloc<> >, SuffixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1109:12: required from 'void _verifyMatchesImpl(Mapper&, PairedEnd) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>; PairedEnd = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1081:23: required from 'void verifyMatches(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1328:22: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; Strata = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18: required from 'void mapReads(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1405:17: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:351:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:381:34: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >, seqan::Alloc<> >]' 129 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFastq_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/file_prefetched.h:151:13: required from 'bool seqan::open(PrefetchedFile >&, const char*) [with TFile = FormattedFile, Tag >; TRecords = SeqStore >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:408:14: required from 'void _openReadsImpl(Mapper&, SingleEnd) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>; SingleEnd = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:402:19: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_iterator.h:80, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:86: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, TIntegral) [with TContainer = Segment, Alloc<> >, Owner > >, PrefixSegment>; TIterator = Iter, Alloc<> >, Owner > >, CountingIteratorImpl_ > >; TSpec = Tag; TIntegral = long unsigned int]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_algorithms.h:244:37: required from 'void seqan::iterate(TContainer&, TFunctor, const Tag&, Parallel) [with TContainer = Segment, Alloc<> >, Owner > >, PrefixSegment>; TFunctor = ReadsClassifier, Tag, Tag, unsigned char, unsigned int, unsigned int, MMap<>, 3> > >; TIterTag = Rooted_; Parallel = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_classifier.h:114:12: required from 'void _classifyReadsImpl(ReadsClassifier&, Strata) [with TSpec = void; TConfig = MapperTraits, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; Strata = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_classifier.h:76:27: required from 'ReadsClassifier::ReadsClassifier(TReadsContext&, THits&, const TSeeds&, const Options&) [with TSpec = void; TConfig = MapperTraits, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; TReadsContext = ReadsContext, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; THits = seqan::String >, seqan::Alloc<> >; TSeeds = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >, seqan::Segment, seqan::Alloc<> >, seqan::Owner > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:656:17: required from 'void classifyReads(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1288:18: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; Strata = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:577:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::Owner > >, seqan::PrefixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::Owner > >, seqan::PrefixSegment>&)' is deprecated [-Wdeprecated-copy] 577 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::Owner > >, seqan::PrefixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::Owner > >, seqan::PrefixSegment>; TIterator = seqan::Iter, seqan::Alloc<> >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::Owner > >, seqan::PrefixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(T&) [with T = Segment >, Alloc<> >, SuffixSegment>; typename Parameter_::Type = Segment >, Alloc<> >, SuffixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:279:31: required from 'typename seqan::Parameter_::Type seqan::host(StringSet >&) [with THost = Segment >, Alloc<> >, SuffixSegment>; TSpec = Segment >, Alloc<> >, SuffixSegment>; typename Parameter_::Type = Segment >, Alloc<> >, SuffixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/bits_bucket.h:182:17: required from 'void seqan::bucket(StringSet >&, const TKeyGetter&, TMaxKey, const TThreading&) [with THost = Segment >, Alloc<> >, SuffixSegment>; TSpec = Segment >, Alloc<> >, SuffixSegment>; TKeyGetter = Getter >, const Tag >; TMaxKey = long unsigned int; TThreading = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1110:11: required from 'void _verifyMatchesImpl(Mapper&, PairedEnd) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>; PairedEnd = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1081:23: required from 'void verifyMatches(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1328:22: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; Strata = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_type.h:358:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 358 | return _object; | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >, seqan::Alloc<> >]' 129 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(T&) [with T = Segment >, Alloc<> >, SuffixSegment>; typename Parameter_::Type = Segment >, Alloc<> >, SuffixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:279:31: required from 'typename seqan::Parameter_::Type seqan::host(StringSet >&) [with THost = Segment >, Alloc<> >, SuffixSegment>; TSpec = Segment >, Alloc<> >, SuffixSegment>; typename Parameter_::Type = Segment >, Alloc<> >, SuffixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/bits_bucket.h:182:17: required from 'void seqan::bucket(StringSet >&, const TKeyGetter&, TMaxKey, const TThreading&) [with THost = Segment >, Alloc<> >, SuffixSegment>; TSpec = Segment >, Alloc<> >, SuffixSegment>; TKeyGetter = Getter >, const Tag >; TMaxKey = long unsigned int; TThreading = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1110:11: required from 'void _verifyMatchesImpl(Mapper&, PairedEnd) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>; PairedEnd = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1081:23: required from 'void verifyMatches(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1328:22: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; Strata = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:351:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_type.h:358:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 358 | return _object; | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >, seqan::Alloc<> >]' 129 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(T&) [with T = Segment >, Alloc<> >, SuffixSegment>; typename Parameter_::Type = Segment >, Alloc<> >, SuffixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:279:31: required from 'typename seqan::Parameter_::Type seqan::host(StringSet >&) [with THost = Segment >, Alloc<> >, SuffixSegment>; TSpec = Segment >, Alloc<> >, SuffixSegment>; typename Parameter_::Type = Segment >, Alloc<> >, SuffixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/bits_bucket.h:182:17: required from 'void seqan::bucket(StringSet >&, const TKeyGetter&, TMaxKey, const TThreading&) [with THost = Segment >, Alloc<> >, SuffixSegment>; TSpec = Segment >, Alloc<> >, SuffixSegment>; TKeyGetter = Getter >, const Tag >; TMaxKey = long unsigned int; TThreading = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1110:11: required from 'void _verifyMatchesImpl(Mapper&, PairedEnd) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>; PairedEnd = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1081:23: required from 'void verifyMatches(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1328:22: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; Strata = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:381:34: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_type.h:358:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 358 | return _object; | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >, seqan::Alloc<> >]' 129 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(T&) [with T = Segment >, Alloc<> >, SuffixSegment>; typename Parameter_::Type = Segment >, Alloc<> >, SuffixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:279:31: required from 'typename seqan::Parameter_::Type seqan::host(StringSet >&) [with THost = Segment >, Alloc<> >, SuffixSegment>; TSpec = Segment >, Alloc<> >, SuffixSegment>; typename Parameter_::Type = Segment >, Alloc<> >, SuffixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/bits_bucket.h:182:17: required from 'void seqan::bucket(StringSet >&, const TKeyGetter&, TMaxKey, const TThreading&) [with THost = Segment >, Alloc<> >, SuffixSegment>; TSpec = Segment >, Alloc<> >, SuffixSegment>; TKeyGetter = Getter >, const Tag >; TMaxKey = long unsigned int; TThreading = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1110:11: required from 'void _verifyMatchesImpl(Mapper&, PairedEnd) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>; PairedEnd = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1081:23: required from 'void verifyMatches(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1328:22: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; Strata = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1237:18: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:351:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:381:34: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_type.h:358:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] 358 | return _object; | ^~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >, seqan::Alloc<> >]' 129 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = TagFasta_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/file_prefetched.h:151:13: required from 'bool seqan::open(PrefetchedFile >&, const char*) [with TFile = FormattedFile, Tag >; TRecords = SeqStore >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:408:14: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence.h:94: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment, Alloc<> >, Owner > >, PrefixSegment>; typename Iterator >::Type = Iter, Alloc<> >, Owner > >, PrefixSegment>, AdaptorIterator, Alloc<> >, Owner > >, CountingIteratorImpl_ > >, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:385:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(T&, Tag) [with T = Segment, Alloc<> >, Owner > >, PrefixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, Owner > >, PrefixSegment>, AdaptorIterator, Alloc<> >, Owner > >, CountingIteratorImpl_ > >, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, Owner > >, PrefixSegment>; typename Iterator >::Type = Iter, Alloc<> >, Owner > >, PrefixSegment>, AdaptorIterator, Alloc<> >, Owner > >, CountingIteratorImpl_ > >, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_algorithms.h:244:24: required from 'void seqan::iterate(TContainer&, TFunctor, const Tag&, Parallel) [with TContainer = Segment, Alloc<> >, Owner > >, PrefixSegment>; TFunctor = ReadsClassifier, Tag, Tag, unsigned char, unsigned int, unsigned int, MMap<>, 3> > >; TIterTag = Rooted_; Parallel = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_classifier.h:114:12: required from 'void _classifyReadsImpl(ReadsClassifier&, Strata) [with TSpec = void; TConfig = MapperTraits, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; Strata = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_classifier.h:76:27: required from 'ReadsClassifier::ReadsClassifier(TReadsContext&, THits&, const TSeeds&, const Options&) [with TSpec = void; TConfig = MapperTraits, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; TReadsContext = ReadsContext, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; THits = seqan::String >, seqan::Alloc<> >; TSeeds = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >, seqan::Segment, seqan::Alloc<> >, seqan::Owner > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:656:17: required from 'void classifyReads(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1288:18: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:343:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::Owner > >, seqan::PrefixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::Owner > >, seqan::PrefixSegment>&)' is deprecated [-Wdeprecated-copy] 343 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::Owner > >, seqan::PrefixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::Owner > >, seqan::PrefixSegment>; TIterator = seqan::Iter, seqan::Alloc<> >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::Owner > >, seqan::PrefixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, std::char_traits >, StreamIterator > >; TContainer = Segment >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/write_sam.h:114:14: required from 'void seqan::write(TTarget&, const BamHeader&, const BamIOContext&, const Sam&) [with TTarget = Iter, std::char_traits >, StreamIterator > >; TNameStore = StringSet >, Owner > > >; TNameStoreCache = NameStoreCache >, Owner > > >, String > >; TStorageSpec = Dependent >; BamHeader = String; Sam = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:293:14: required from 'void seqan::write(TTarget&, const BamHeader&, BamIOContext&, const TagSelector&) [with TTarget = Iter, std::char_traits >, StreamIterator > >; TNameStore = StringSet >, Owner > > >; TNameStoreCache = NameStoreCache >, Owner > > >, String > >; TStorageSpec = Dependent >; TTagList = TagList >; BamHeader = String]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/bam_file.h:295:14: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Embl_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(FormattedFile&, const char*, int) [with TFileFormat = Tag; TDirection = Tag; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/file_prefetched.h:151:13: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14: required from 'void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const StringSet, Alloc<> >, Owner > >; TSpec = PrefixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, Owner > >, PrefixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::Owner > >, seqan::PrefixSegment>; TIterator = seqan::Iter, seqan::Alloc<> >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::Owner > >, seqan::PrefixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:577:12: required from 'seqan::Iter > seqan::operator+(const Iter >&, TIntegral) [with TContainer = Segment, Alloc<> >, Owner > >, PrefixSegment>; TIterator = Iter, Alloc<> >, Owner > >, CountingIteratorImpl_ > >; TSpec = Tag; TIntegral = long unsigned int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_algorithms.h:244:37: required from 'void seqan::iterate(TContainer&, TFunctor, const Tag&, Parallel) [with TContainer = Segment, Alloc<> >, Owner > >, PrefixSegment>; TFunctor = ReadsClassifier, Tag, Tag, unsigned char, unsigned int, unsigned int, MMap<>, 3> > >; TIterTag = Rooted_; Parallel = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_classifier.h:114:12: required from 'void _classifyReadsImpl(ReadsClassifier&, Strata) [with TSpec = void; TConfig = MapperTraits, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; Strata = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_classifier.h:76:27: required from 'ReadsClassifier::ReadsClassifier(TReadsContext&, THits&, const TSeeds&, const Options&) [with TSpec = void; TConfig = MapperTraits, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; TReadsContext = ReadsContext, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; THits = seqan::String >, seqan::Alloc<> >; TSeeds = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >, seqan::Segment, seqan::Alloc<> >, seqan::Owner > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:656:17: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::Owner > >, seqan::PrefixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::Owner > >, seqan::PrefixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::Owner > >, seqan::PrefixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:216:27: required from 'void seqan::setCargo(ModifiedString >&, typename Parameter_::Type) [with THost = String >, Alloc<> >; TPositions = Segment >, InfixSegment>; typename Parameter_::Type = Segment >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_position.h:357:13: required from 'typename seqan::Infix > >::Type seqan::infix(ModifiedString >&, TPosBegin, TPosEnd) [with THost = String >, Alloc<> >; TPositions = String >; TPosBegin = long unsigned int; TPosEnd = long unsigned int; typename Infix > >::Type = ModifiedString >, Alloc<> >, ModPos >, InfixSegment> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:649:17: required from 'typename seqan::Infix::Type seqan::infixWithLength(T&&, TPosBegin, TSize) [with T = ModifiedString >, Alloc<> >, ModPos > > >; TPosBegin = long unsigned int; TSize = long unsigned int; typename Infix::Type = ModifiedString >, Alloc<> >, ModPos >, InfixSegment> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h:489:27: required from 'typename seqan::InfixOnValue::Type seqan::value(const StringSet >&, TPos) [with THost = ModifiedString >, Alloc<> >, ModPos > > >; TSpec = ModifiedString >, Alloc<> >, ModPos > > >; TPos = long unsigned int; typename InfixOnValue::Type = const ModifiedString >, Alloc<> >, ModPos >, InfixSegment> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h:215:17: required from 'typename seqan::Reference > > >::Type seqan::value(const Iter > >&) [with TContainer = const StringSet >, Alloc<> >, ModPos > > >, Segment >, Alloc<> >, ModPos > > >, InfixSegment> >; typename Reference > > >::Type = const ModifiedString >, Alloc<> >, ModPos >, InfixSegment> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:885:53: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = GenBank_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = Tag; TDirection = Tag; TSpec = void; TThrowExceptions = False]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:739:17: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1397:14: required from 'void runMapper(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14: required from 'void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:90: /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_writer.h: In instantiation of 'void setQual(seqan::BamAlignmentRecord&, const TString&) [with TString = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_writer.h:455:12: required from 'void _fillReadSeqQual(MatchesWriter&, TReadSeqId) [with TSpec = void; Traits = MapperTraits, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; TReadSeqId = long unsigned int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_writer.h:305:21: required from 'void _writeMappedRead(MatchesWriter&, TReadId, const TMatch&, SingleEnd) [with TSpec = void; Traits = MapperTraits, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; TReadId = long unsigned int; TMatch = Match >; SingleEnd = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_writer.h:236:25: required from 'void _writeMatchesImpl(MatchesWriter&, const TMatchIt&) [with TSpec = void; Traits = MapperTraits, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; TMatchIt = seqan::Iter >, seqan::Alloc<> >, seqan::ModPos > > >, seqan::ModPos > > >, seqan::CountingIteratorImpl_ > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_writer.h:102:26: required from 'void MatchesWriter::operator()(const TIterator&) [with TIterator = seqan::Iter >, seqan::Alloc<> >, seqan::ModPos > > >, seqan::ModPos > > >, seqan::CountingIteratorImpl_ > >; TSpec = void; Traits = MapperTraits, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_algorithms.h:248:14: required from 'void seqan::iterate(TContainer&, TFunctor, const Tag&, Parallel) [with TContainer = const ModifiedString >, Alloc<> >, ModPos > > >, ModPos > > >; TFunctor = MatchesWriter, Tag, Tag, unsigned char, unsigned int, unsigned int, MMap<>, 3> > >; TIterTag = Standard_; Parallel = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_writer.h:96:16: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_writer.h:164:16: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 164 | TQualities qual(string); | ^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::QualityExtractor >; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:81: /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/find_extender.h: In instantiation of 'bool _extendLeft(Extender, TSpec>&, THaystackInfix&, TNeedleInfix&, THaystackPos&, TErrors&, TMaxErrors) [with THaystack = seqan::StringSet, seqan::Packed > >, seqan::Owner > > >; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void; THaystackInfix = seqan::Segment, seqan::Packed > >, seqan::InfixSegment>; TNeedleInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THaystackPos = seqan::Pair >; TErrors = long unsigned int; TMaxErrors = long unsigned int]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/find_extender.h:413:25: required from 'void extend(Extender&, const TNeedle&, THaystackPos, THaystackPos, TNeedlePos, TNeedlePos, TErrors, TMaxErrors, TDelegate&&) [with THaystack = seqan::StringSet, seqan::Packed > >, seqan::Owner > > >; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TDistance = seqan::Tag; TSpec = void; THaystackPos = seqan::Pair >; TNeedlePos = long unsigned int; TErrors = long unsigned int; TMaxErrors = long unsigned int; TDelegate = HitsExtender, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_extender.h:216:15: required from 'void _extendHitImpl(HitsExtender&, const THitsIterator&, const TStrategy&) [with TSpec = void; Traits = MapperTraits, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; THitsIterator = const Hit >*; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_extender.h:112:23: required from 'void HitsExtender::operator()(const THitsIterator&) [with THitsIterator = const Hit >*; TSpec = void; Traits = MapperTraits, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_algorithms.h:248:14: required from 'void seqan::iterate(TContainer&, TFunctor, const Tag&, Parallel) [with TContainer = const String >, Alloc<> >; TFunctor = HitsExtender, Tag, Tag, unsigned char, unsigned int, unsigned int, MMap<>, 3> > >; TIterTag = Standard_; Parallel = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_extender.h:134:12: required from 'void _extendHitsImpl(HitsExtender&, const TStrategy&) [with TSpec = void; Traits = MapperTraits, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_extender.h:106:24: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:402:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/find_extender.h:220:25: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 220 | TNeedleInfixRev needleInfixRev(needleInfix); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:62: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/find_extender.h:221:27: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Packed > >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Packed > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 221 | THaystackInfixRev haystackInfixRev(haystackInfix); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Packed > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Packed > >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Packed > >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Packed > >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/find_extender.h:241:21: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 241 | TNeedleInfixRev needleInfixRev(needleInfix); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/find_extender.h:242:23: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Packed > >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Packed > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 242 | THaystackInfixRev haystackInfixRev(haystackInfix); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Packed > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Packed > >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Packed > >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Packed > >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/find_extender.h: In instantiation of 'bool _extendRight(Extender, TSpec>&, THaystackInfix&, TNeedleInfix&, THaystackPos&, TErrors&, TMaxErrors) [with THaystack = seqan::StringSet, seqan::Packed > >, seqan::Owner > > >; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void; THaystackInfix = seqan::Segment, seqan::Packed > >, seqan::InfixSegment>; TNeedleInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THaystackPos = seqan::Pair >; TErrors = long unsigned int; TMaxErrors = long unsigned int]': /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/find_extender.h:429:26: required from 'void extend(Extender&, const TNeedle&, THaystackPos, THaystackPos, TNeedlePos, TNeedlePos, TErrors, TMaxErrors, TDelegate&&) [with THaystack = seqan::StringSet, seqan::Packed > >, seqan::Owner > > >; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TDistance = seqan::Tag; TSpec = void; THaystackPos = seqan::Pair >; TNeedlePos = long unsigned int; TErrors = long unsigned int; TMaxErrors = long unsigned int; TDelegate = HitsExtender, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_extender.h:216:15: required from 'void _extendHitImpl(HitsExtender&, const THitsIterator&, const TStrategy&) [with TSpec = void; Traits = MapperTraits, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; THitsIterator = const Hit >*; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_extender.h:112:23: required from 'void HitsExtender::operator()(const THitsIterator&) [with THitsIterator = const Hit >*; TSpec = void; Traits = MapperTraits, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_algorithms.h:248:14: required from 'void seqan::iterate(TContainer&, TFunctor, const Tag&, Parallel) [with TContainer = const String >, Alloc<> >; TFunctor = HitsExtender, Tag, Tag, unsigned char, unsigned int, unsigned int, MMap<>, 3> > >; TIterTag = Standard_; Parallel = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_extender.h:134:12: required from 'void _extendHitsImpl(HitsExtender&, const TStrategy&) [with TSpec = void; Traits = MapperTraits, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_extender.h:106:24: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:402:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/find_extender.h:311:20: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Packed > >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Packed > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 311 | THaystackInfix haystackPrefix(haystackInfix); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Packed > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Packed > >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/find_extender.h:312:18: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 312 | TNeedleInfix needlePrefix(needleInfix); | ^~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename RemoveReference::Type = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const Segment >, InfixSegment>; TDirection = Tag; typename DisableIf >, typename Iterator >::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = Iter, std::char_traits >, StreamIterator > >; TContainer = Segment >, InfixSegment>; typename EnableIf >, And >, Not::Type> > > > >, void>::Type = void; typename Value::Type = char]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/bam_io/write_sam.h:114:14: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, Tag) [with TFilename = Segment; TFormat_ = Raw_]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, TagSelector&) [with TFilename = Segment; TTagList = TagList, TagList, TagList, TagList, TagList, TagList, TagList > > > > > > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h:722:37: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:402:19: required from 'void openReads(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1397:14: required from 'void runMapper(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.h:1432:14: required from 'void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::QualityExtractor >; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_writer.h:164:16: required from 'void setQual(seqan::BamAlignmentRecord&, const TString&) [with TString = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_writer.h:455:12: required from 'void _fillReadSeqQual(MatchesWriter&, TReadSeqId) [with TSpec = void; Traits = MapperTraits, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; TReadSeqId = long unsigned int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_writer.h:305:21: required from 'void _writeMappedRead(MatchesWriter&, TReadId, const TMatch&, SingleEnd) [with TSpec = void; Traits = MapperTraits, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; TReadId = long unsigned int; TMatch = Match >; SingleEnd = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_writer.h:236:25: required from 'void _writeMatchesImpl(MatchesWriter&, const TMatchIt&) [with TSpec = void; Traits = MapperTraits, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; TMatchIt = seqan::Iter >, seqan::Alloc<> >, seqan::ModPos > > >, seqan::ModPos > > >, seqan::CountingIteratorImpl_ > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_writer.h:102:26: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:118:25: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/find_extender.h:220:25: required from 'bool _extendLeft(Extender, TSpec>&, THaystackInfix&, TNeedleInfix&, THaystackPos&, TErrors&, TMaxErrors) [with THaystack = seqan::StringSet, seqan::Packed > >, seqan::Owner > > >; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void; THaystackInfix = seqan::Segment, seqan::Packed > >, seqan::InfixSegment>; TNeedleInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THaystackPos = seqan::Pair >; TErrors = long unsigned int; TMaxErrors = long unsigned int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/find_extender.h:413:25: required from 'void extend(Extender&, const TNeedle&, THaystackPos, THaystackPos, TNeedlePos, TNeedlePos, TErrors, TMaxErrors, TDelegate&&) [with THaystack = seqan::StringSet, seqan::Packed > >, seqan::Owner > > >; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TDistance = seqan::Tag; TSpec = void; THaystackPos = seqan::Pair >; TNeedlePos = long unsigned int; TErrors = long unsigned int; TMaxErrors = long unsigned int; TDelegate = HitsExtender, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_extender.h:216:15: required from 'void _extendHitImpl(HitsExtender&, const THitsIterator&, const TStrategy&) [with TSpec = void; Traits = MapperTraits, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; THitsIterator = const Hit >*; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_extender.h:112:23: required from 'void HitsExtender::operator()(const THitsIterator&) [with THitsIterator = const Hit >*; TSpec = void; Traits = MapperTraits, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_algorithms.h:248:14: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:402:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String, Packed > >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Packed > >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:118:25: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Packed > >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Packed > >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/find_extender.h:221:27: required from 'bool _extendLeft(Extender, TSpec>&, THaystackInfix&, TNeedleInfix&, THaystackPos&, TErrors&, TMaxErrors) [with THaystack = seqan::StringSet, seqan::Packed > >, seqan::Owner > > >; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void; THaystackInfix = seqan::Segment, seqan::Packed > >, seqan::InfixSegment>; TNeedleInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THaystackPos = seqan::Pair >; TErrors = long unsigned int; TMaxErrors = long unsigned int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/find_extender.h:413:25: required from 'void extend(Extender&, const TNeedle&, THaystackPos, THaystackPos, TNeedlePos, TNeedlePos, TErrors, TMaxErrors, TDelegate&&) [with THaystack = seqan::StringSet, seqan::Packed > >, seqan::Owner > > >; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TDistance = seqan::Tag; TSpec = void; THaystackPos = seqan::Pair >; TNeedlePos = long unsigned int; TErrors = long unsigned int; TMaxErrors = long unsigned int; TDelegate = HitsExtender, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_extender.h:216:15: required from 'void _extendHitImpl(HitsExtender&, const THitsIterator&, const TStrategy&) [with TSpec = void; Traits = MapperTraits, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; THitsIterator = const Hit >*; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_extender.h:112:23: required from 'void HitsExtender::operator()(const THitsIterator&) [with THitsIterator = const Hit >*; TSpec = void; Traits = MapperTraits, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/parallel/parallel_algorithms.h:248:14: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:402:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Packed > >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Packed > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 443 | return me; | ^~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Packed > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Packed > >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Packed > >, seqan::InfixSegment>; TIterator = seqan::Iter, seqan::Packed > >, seqan::Packed > >; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_iterator.h:72:7: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(ModifiedString >&, Tag) [with THost = Segment, Packed > >, InfixSegment>; TTagSpec = Rooted_; typename Iterator >, const Tag >::Type = ModifiedIterator, Packed > >, InfixSegment>, AdaptorIterator, Packed > >, Packed > >, Tag > >, Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:301:30: required from 'seqan::Finder::Finder(THaystack&) [with THaystack = seqan::ModifiedString, seqan::Packed > >, seqan::InfixSegment>, seqan::Tag >; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/find_extender.h:243:17: required from 'bool _extendLeft(Extender, TSpec>&, THaystackInfix&, TNeedleInfix&, THaystackPos&, TErrors&, TMaxErrors) [with THaystack = seqan::StringSet, seqan::Packed > >, seqan::Owner > > >; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void; THaystackInfix = seqan::Segment, seqan::Packed > >, seqan::InfixSegment>; TNeedleInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THaystackPos = seqan::Pair >; TErrors = long unsigned int; TMaxErrors = long unsigned int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/find_extender.h:413:25: required from 'void extend(Extender&, const TNeedle&, THaystackPos, THaystackPos, TNeedlePos, TNeedlePos, TErrors, TMaxErrors, TDelegate&&) [with THaystack = seqan::StringSet, seqan::Packed > >, seqan::Owner > > >; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TDistance = seqan::Tag; TSpec = void; THaystackPos = seqan::Pair >; TNeedlePos = long unsigned int; TErrors = long unsigned int; TMaxErrors = long unsigned int; TDelegate = HitsExtender, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_extender.h:216:15: required from 'void _extendHitImpl(HitsExtender&, const THitsIterator&, const TStrategy&) [with TSpec = void; Traits = MapperTraits, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; THitsIterator = const Hit >*; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_extender.h:112:23: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:402:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Packed > >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Packed > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Packed > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Packed > >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment, Packed > >, InfixSegment>; typename Iterator >::Type = Iter, Packed > >, InfixSegment>, AdaptorIterator, Packed > >, Packed > >, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:385:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(T&, Tag) [with T = Segment, Packed > >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Packed > >, InfixSegment>, AdaptorIterator, Packed > >, Packed > >, Tag > >; typename RemoveReference::Type = Segment, Packed > >, InfixSegment>; typename Iterator >::Type = Iter, Packed > >, InfixSegment>, AdaptorIterator, Packed > >, Packed > >, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:301:30: required from 'seqan::Finder::Finder(THaystack&) [with THaystack = seqan::Segment, seqan::Packed > >, seqan::InfixSegment>; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/find_extender.h:317:18: required from 'bool _extendRight(Extender, TSpec>&, THaystackInfix&, TNeedleInfix&, THaystackPos&, TErrors&, TMaxErrors) [with THaystack = seqan::StringSet, seqan::Packed > >, seqan::Owner > > >; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void; THaystackInfix = seqan::Segment, seqan::Packed > >, seqan::InfixSegment>; TNeedleInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THaystackPos = seqan::Pair >; TErrors = long unsigned int; TMaxErrors = long unsigned int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/find_extender.h:429:26: required from 'void extend(Extender&, const TNeedle&, THaystackPos, THaystackPos, TNeedlePos, TNeedlePos, TErrors, TMaxErrors, TDelegate&&) [with THaystack = seqan::StringSet, seqan::Packed > >, seqan::Owner > > >; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TDistance = seqan::Tag; TSpec = void; THaystackPos = seqan::Pair >; TNeedlePos = long unsigned int; TErrors = long unsigned int; TMaxErrors = long unsigned int; TDelegate = HitsExtender, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_extender.h:216:15: required from 'void _extendHitImpl(HitsExtender&, const THitsIterator&, const TStrategy&) [with TSpec = void; Traits = MapperTraits, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; THitsIterator = const Hit >*; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_extender.h:112:23: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:402:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:343:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Packed > >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Packed > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 343 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Packed > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Packed > >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Packed > >, seqan::InfixSegment>; TIterator = seqan::Iter, seqan::Packed > >, seqan::Packed > >; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Packed > >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(T&, Rooted) [with T = Segment, Packed > >, InfixSegment>; typename Iterator >::Type = Iter, Packed > >, InfixSegment>, AdaptorIterator, Packed > >, Packed > >, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:512:23: required from 'typename seqan::Iterator >::Type seqan::end(T&, Tag) [with T = Segment, Packed > >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Packed > >, InfixSegment>, AdaptorIterator, Packed > >, Packed > >, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_reverse.h:469:24: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(ModifiedString >&, Tag) [with THost = Segment, Packed > >, InfixSegment>; TTagSpec = Rooted_; typename Iterator >, const Tag >::Type = ModifiedIterator, Packed > >, InfixSegment>, AdaptorIterator, Packed > >, Packed > >, Tag > >, Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:301:30: required from 'seqan::Finder::Finder(THaystack&) [with THaystack = seqan::ModifiedString, seqan::Packed > >, seqan::InfixSegment>, seqan::Tag >; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/find_extender.h:243:17: required from 'bool _extendLeft(Extender, TSpec>&, THaystackInfix&, TNeedleInfix&, THaystackPos&, TErrors&, TMaxErrors) [with THaystack = seqan::StringSet, seqan::Packed > >, seqan::Owner > > >; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void; THaystackInfix = seqan::Segment, seqan::Packed > >, seqan::InfixSegment>; TNeedleInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THaystackPos = seqan::Pair >; TErrors = long unsigned int; TMaxErrors = long unsigned int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/find_extender.h:413:25: required from 'void extend(Extender&, const TNeedle&, THaystackPos, THaystackPos, TNeedlePos, TNeedlePos, TErrors, TMaxErrors, TDelegate&&) [with THaystack = seqan::StringSet, seqan::Packed > >, seqan::Owner > > >; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TDistance = seqan::Tag; TSpec = void; THaystackPos = seqan::Pair >; TNeedlePos = long unsigned int; TErrors = long unsigned int; TMaxErrors = long unsigned int; TDelegate = HitsExtender, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> > >&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_extender.h:216:15: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:402:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:478:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Packed > >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Packed > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 478 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Packed > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Packed > >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Packed > >, seqan::InfixSegment>; TIterator = seqan::Iter, seqan::Packed > >, seqan::Packed > >; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Packed > >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/basic_fundamental.h:82, from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Packed > >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Packed > >, seqan::InfixSegment>&]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Packed > >, InfixSegment>*; TParam = const Segment, Packed > >, InfixSegment>&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Packed > >, InfixSegment>, Tag >; TValue = Segment, Packed > >, InfixSegment>; typename Value::Type = Segment, Packed > >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Packed > >, InfixSegment>; TValue2 = const Segment, Packed > >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:887:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Segment, Packed > >, InfixSegment>; TSource = Segment, Packed > >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:135:20: required from 'seqan::Holder >::Holder(const THostValue&) [with TValue = seqan::Segment, seqan::Packed > >, seqan::InfixSegment>; THostValue = seqan::Segment, seqan::Packed > >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_anchor.h:175:9: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Packed > >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Packed > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Packed > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Packed > >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = const Segment, Alloc<> >, InfixSegment>&]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>; TValue2 = const Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:887:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Segment, Alloc<> >, InfixSegment>; TSource = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h:135:20: required from 'seqan::Holder >::Holder(const THostValue&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THostValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/gaps_anchor.h:175:9: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = const SimpleType*; TSpec = Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:624:58: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Packed > >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Packed > >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Packed > >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Packed > >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:176:44: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, const AlignConfig&, int, int, const TAlgoTag&) [with TSequenceH = Segment, Packed > >, InfixSegment>; TGapsSpecH = AnchorGaps > >; TSequenceV = Segment, Alloc<> >, InfixSegment>; TGapsSpecV = AnchorGaps > >; TScoreValue = int; TScoreSpec = Tag; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = Tag; TAlgoTag = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_aligner.h:146:27: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, int) [with TContainer = Segment, Packed > >, InfixSegment>; TIterator = Iter, Packed > >, Packed > >; TSpec = Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:631:62: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Packed > >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Packed > >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Packed > >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Packed > >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:176:44: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, const AlignConfig&, int, int, const TAlgoTag&) [with TSequenceH = Segment, Packed > >, InfixSegment>; TGapsSpecH = AnchorGaps > >; TSequenceV = Segment, Alloc<> >, InfixSegment>; TGapsSpecV = AnchorGaps > >; TScoreValue = int; TScoreSpec = Tag; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = Tag; TAlgoTag = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_aligner.h:146:27: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:586:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Packed > >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Packed > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 586 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Packed > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Packed > >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Packed > >, seqan::InfixSegment>; TIterator = seqan::Iter, seqan::Packed > >, seqan::Packed > >; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Packed > >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, TIntegral) [with TContainer = Segment, Packed > >, InfixSegment>; TIterator = Iter, Packed > >, Packed > >; TSpec = Tag; TIntegral = long int]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:634:69: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Packed > >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Packed > >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Packed > >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Packed > >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:176:44: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, const AlignConfig&, int, int, const TAlgoTag&) [with TSequenceH = Segment, Packed > >, InfixSegment>; TGapsSpecH = AnchorGaps > >; TSequenceV = Segment, Alloc<> >, InfixSegment>; TGapsSpecV = AnchorGaps > >; TScoreValue = int; TScoreSpec = Tag; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = Tag; TAlgoTag = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_aligner.h:146:27: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:577:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Packed > >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Packed > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 577 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Packed > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Packed > >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Packed > >, seqan::InfixSegment>; TIterator = seqan::Iter, seqan::Packed > >, seqan::Packed > >; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Packed > >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Packed > >, InfixSegment>; TIterator = Iter, Packed > >, Packed > >; TSpec = Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:650:46: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Packed > >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Packed > >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Packed > >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Packed > >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:176:44: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, const AlignConfig&, int, int, const TAlgoTag&) [with TSequenceH = Segment, Packed > >, InfixSegment>; TGapsSpecH = AnchorGaps > >; TSequenceV = Segment, Alloc<> >, InfixSegment>; TGapsSpecV = AnchorGaps > >; TScoreValue = int; TScoreSpec = Tag; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = Tag; TAlgoTag = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_aligner.h:146:27: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Packed > >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Packed > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Packed > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Packed > >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Packed > >, seqan::InfixSegment>; TIterator = seqan::Iter, seqan::Packed > >, seqan::Packed > >; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Packed > >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier.h:61: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_iterator.h: In instantiation of 'typename seqan::Container >::Type seqan::container(ModifiedIterator&) [with THost = Iter, Packed > >, InfixSegment>, AdaptorIterator, Packed > >, Packed > >, Tag > >; TSpec = Tag; typename Container >::Type = ModifiedString, Packed > >, InfixSegment>, Tag >]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_interface.h:430:24: required from 'void seqan::goEnd(TIterator&) [with TIterator = ModifiedIterator, Packed > >, InfixSegment>, AdaptorIterator, Packed > >, Packed > >, Tag > >, Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:737:10: required from 'void seqan::goEnd(Finder&) [with THaystack = ModifiedString, Packed > >, InfixSegment>, Tag >; TSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1537:18: required from 'bool seqan::find(TFinder&, const TNeedle&, PatternState_, True, TFindBeginPatternSpec> >&) [with TFinder = Finder, Packed > >, InfixSegment>, Tag >, void>; TNeedle = ModifiedString, Alloc<> >, InfixSegment>, Tag >; TNeedle2 = ModifiedString, Alloc<> >, InfixSegment>, Tag >; TSpec = FindPrefix; TFinderCSP = NMatchesNone_; TPatternCSP = NMatchesNone_; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1646:16: required from 'bool seqan::find(TFinder&, const TNeedle&, PatternState_ >&, int) [with TFinder = Finder, Packed > >, InfixSegment>, Tag >, void>; TNeedle = ModifiedString, Alloc<> >, InfixSegment>, Tag >; TNeedle2 = ModifiedString, Alloc<> >, InfixSegment>, Tag >; TSpec = AlignTextBanded; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/find_extender.h:246:16: required from 'bool _extendLeft(Extender, TSpec>&, THaystackInfix&, TNeedleInfix&, THaystackPos&, TErrors&, TMaxErrors) [with THaystack = seqan::StringSet, seqan::Packed > >, seqan::Owner > > >; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void; THaystackInfix = seqan::Segment, seqan::Packed > >, seqan::InfixSegment>; TNeedleInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THaystackPos = seqan::Pair >; TErrors = long unsigned int; TMaxErrors = long unsigned int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/find_extender.h:413:25: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:402:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_iterator.h:278:16: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Packed > >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Packed > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 278 | TContainer cont(container(host(me))); | ^~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Packed > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Packed > >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Packed > >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Packed > >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find.h:55: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = Segment, Packed > >, InfixSegment>; TSpec = void; typename Parameter_::Type = Segment, Packed > >, InfixSegment>]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:989:66: required from 'bool seqan::_patternInitSmallStateBanded(TFinder&, const TNeedle2&, PatternState_, True, TFindBeginPatternSpec> >&) [with TFinder = Finder, Packed > >, InfixSegment>, void>; TNeedle = Segment, Alloc<> >, InfixSegment>; TNeedle2 = Segment, Alloc<> >, InfixSegment>; TSpec = FindPrefix; TFinderCSP = NMatchesNone_; TPatternCSP = NMatchesNone_; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1181:44: required from 'bool seqan::_stateInit(TFinder&, const TNeedle&, PatternState_, True, TFindBeginPatternSpec> >&) [with TFinder = Finder, Packed > >, InfixSegment>, void>; TNeedle = Segment, Alloc<> >, InfixSegment>; TNeedle2 = Segment, Alloc<> >, InfixSegment>; TSpec = FindPrefix; TFinderCSP = NMatchesNone_; TPatternCSP = NMatchesNone_; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1535:24: required from 'bool seqan::find(TFinder&, const TNeedle&, PatternState_, True, TFindBeginPatternSpec> >&) [with TFinder = Finder, Packed > >, InfixSegment>, void>; TNeedle = Segment, Alloc<> >, InfixSegment>; TNeedle2 = Segment, Alloc<> >, InfixSegment>; TSpec = FindPrefix; TFinderCSP = NMatchesNone_; TPatternCSP = NMatchesNone_; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1646:16: required from 'bool seqan::find(TFinder&, const TNeedle&, PatternState_ >&, int) [with TFinder = Finder, Packed > >, InfixSegment>, void>; TNeedle = Segment, Alloc<> >, InfixSegment>; TNeedle2 = Segment, Alloc<> >, InfixSegment>; TSpec = AlignTextBanded; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/find_extender.h:320:16: required from 'bool _extendRight(Extender, TSpec>&, THaystackInfix&, TNeedleInfix&, THaystackPos&, TErrors&, TMaxErrors) [with THaystack = seqan::StringSet, seqan::Packed > >, seqan::Owner > > >; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void; THaystackInfix = seqan::Segment, seqan::Packed > >, seqan::InfixSegment>; TNeedleInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THaystackPos = seqan::Pair >; TErrors = long unsigned int; TMaxErrors = long unsigned int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/find_extender.h:429:26: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:402:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_base.h:599:38: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Packed > >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Packed > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 599 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Packed > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Packed > >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = const SimpleType*; TSpec = Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:993:52: required from 'void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Packed > >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:612:32: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Packed > >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Packed > >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Packed > >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Packed > >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:176:44: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:586:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 586 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, TIntegral) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = const SimpleType*; TSpec = Tag; TIntegral = long int]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:994:55: required from 'void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Packed > >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:612:32: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Packed > >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Packed > >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Packed > >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Packed > >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:176:44: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:577:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 577 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:624:41: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Packed > >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Packed > >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Packed > >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Packed > >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:176:44: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Packed > >, InfixSegment>; typename Iterator >::Type = Iter, Packed > >, InfixSegment>, AdaptorIterator, Packed > >, Packed > >, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Packed > >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Packed > >, InfixSegment>, AdaptorIterator, Packed > >, Packed > >, Tag > >; typename RemoveReference::Type = Segment, Packed > >, InfixSegment>; typename Iterator >::Type = Iter, Packed > >, InfixSegment>, AdaptorIterator, Packed > >, Packed > >, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:631:45: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Packed > >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Packed > >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Packed > >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Packed > >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:176:44: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Packed > >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Packed > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Packed > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Packed > >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Packed > >, seqan::InfixSegment>; TIterator = seqan::Iter, seqan::Packed > >, seqan::Packed > >; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Packed > >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment, Packed > >, InfixSegment>; typename Iterator >::Type = Iter, Packed > >, InfixSegment>, AdaptorIterator, Packed > >, Packed > >, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:520:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment, Packed > >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Packed > >, InfixSegment>, AdaptorIterator, Packed > >, Packed > >, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:650:29: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Packed > >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Packed > >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Packed > >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Packed > >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:176:44: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Packed > >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Packed > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 486 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Packed > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Packed > >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Packed > >, seqan::InfixSegment>; TIterator = seqan::Iter, seqan::Packed > >, seqan::Packed > >; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Packed > >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:381:19: required from 'void seqan::_computeTrack(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSeqHValue&, const TSeqVValue&, const TSeqVIterator&, const TSeqVIterator&, const TScoringScheme&, TDPCell&, TDPCell&, const TColumnDescriptor&, const TDPProfile&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSeqHValue = SimpleType; TSeqVValue = SimpleType; TSeqVIterator = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; TScoringScheme = Score >; TDPCell = DPCell_ >; TColumnDescriptor = MetaColumnDescriptor, Tag >; TDPProfile = DPProfile_ >, Tag, TracebackOn, Tag > >, Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:891:38: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Packed > >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWiseBanded = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Packed > >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Packed > >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&, const TGapModel&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Packed > >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; TGapModel = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/global_alignment_banded.h:176:44: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_iterator.h:72:7: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(const ModifiedString >&, Tag) [with THost = Segment, Alloc<> >, InfixSegment>; TTagSpec = Standard_; typename Iterator >, const Tag >::Type = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_lexical.h:287:63: required from 'void seqan::compare_(Lexical&, TLeft&, TRight&) [with TSpec = long unsigned int; TLeft = const ModifiedString, Packed > >, InfixSegment>, Tag >; TRight = const ModifiedString, Alloc<> >, InfixSegment>, Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_lexical.h:323:13: required from 'void seqan::compare(Lexical&, const TLeft&, const TRight&) [with TSpec = long unsigned int; TLeft = ModifiedString, Packed > >, InfixSegment>, Tag >; TRight = ModifiedString, Alloc<> >, InfixSegment>, Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_lexical.h:170:16: required from 'seqan::Lexical::Lexical(const TLeft&, const TRight&) [with TLeft = seqan::ModifiedString, seqan::Packed > >, seqan::InfixSegment>, seqan::Tag >; TRight = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >; TSpec = long unsigned int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_lexical.h:750:38: required from 'typename seqan::Size::Type seqan::lcpLength(const TLeft&, const TRight&) [with TLeft = ModifiedString, Packed > >, InfixSegment>, Tag >; TRight = ModifiedString, Alloc<> >, InfixSegment>, Tag >; typename Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/find_extender.h:222:24: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:402:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:124:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 124 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:509:41: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Packed > >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Packed > >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Packed > >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/find_verifier.h:112:39: required from 'void verify(Verifier >&, const TNeedle&, THaystackPos, THaystackPos, TErrors, TErrors, TDelegate&) [with THaystack = seqan::StringSet, seqan::Packed > >, seqan::Owner > > >; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THaystackPos = seqan::Pair >; TErrors = long unsigned int; TDelegate = AnchorsVerifier, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_verifier.h:193:11: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 351 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:520:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:510:37: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Packed > >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Packed > >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Packed > >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/find_verifier.h:112:39: required from 'void verify(Verifier >&, const TNeedle&, THaystackPos, THaystackPos, TErrors, TErrors, TDelegate&) [with THaystack = seqan::StringSet, seqan::Packed > >, seqan::Owner > > >; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THaystackPos = seqan::Pair >; TErrors = long unsigned int; TDelegate = AnchorsVerifier, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper_verifier.h:193:11: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 486 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:512:23: required from 'typename seqan::Iterator >::Type seqan::end(T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_reverse.h:458:102: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(const ModifiedString >&, Tag) [with THost = Segment, Alloc<> >, InfixSegment>; TTagSpec = Standard_; typename Iterator >, const Tag >::Type = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_lexical.h:287:63: required from 'void seqan::compare_(Lexical&, TLeft&, TRight&) [with TSpec = long unsigned int; TLeft = const ModifiedString, Packed > >, InfixSegment>, Tag >; TRight = const ModifiedString, Alloc<> >, InfixSegment>, Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_lexical.h:323:13: required from 'void seqan::compare(Lexical&, const TLeft&, const TRight&) [with TSpec = long unsigned int; TLeft = ModifiedString, Packed > >, InfixSegment>, Tag >; TRight = ModifiedString, Alloc<> >, InfixSegment>, Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_lexical.h:170:16: required from 'seqan::Lexical::Lexical(const TLeft&, const TRight&) [with TLeft = seqan::ModifiedString, seqan::Packed > >, seqan::InfixSegment>, seqan::Tag >; TRight = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >; TSpec = long unsigned int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_lexical.h:750:38: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:402:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:478:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 478 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:385:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename DisableIf::Type> >, typename Iterator >::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename RemoveReference::Type = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/modifier/modifier_reverse.h:503:103: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::end(const ModifiedString >&, Tag) [with THost = Segment, Alloc<> >, InfixSegment>; TTagSpec = Standard_; typename Iterator >, const Tag >::Type = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:994:21: required from 'bool seqan::_patternInitSmallStateBanded(TFinder&, const TNeedle2&, PatternState_, True, TFindBeginPatternSpec> >&) [with TFinder = Finder, Packed > >, InfixSegment>, Tag >, void>; TNeedle = ModifiedString, Alloc<> >, InfixSegment>, Tag >; TNeedle2 = ModifiedString, Alloc<> >, InfixSegment>, Tag >; TSpec = FindPrefix; TFinderCSP = NMatchesNone_; TPatternCSP = NMatchesNone_; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1181:44: required from 'bool seqan::_stateInit(TFinder&, const TNeedle&, PatternState_, True, TFindBeginPatternSpec> >&) [with TFinder = Finder, Packed > >, InfixSegment>, Tag >, void>; TNeedle = ModifiedString, Alloc<> >, InfixSegment>, Tag >; TNeedle2 = ModifiedString, Alloc<> >, InfixSegment>, Tag >; TSpec = FindPrefix; TFinderCSP = NMatchesNone_; TPatternCSP = NMatchesNone_; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1535:24: required from 'bool seqan::find(TFinder&, const TNeedle&, PatternState_, True, TFindBeginPatternSpec> >&) [with TFinder = Finder, Packed > >, InfixSegment>, Tag >, void>; TNeedle = ModifiedString, Alloc<> >, InfixSegment>, Tag >; TNeedle2 = ModifiedString, Alloc<> >, InfixSegment>, Tag >; TSpec = FindPrefix; TFinderCSP = NMatchesNone_; TPatternCSP = NMatchesNone_; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h:1646:16: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:402:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:343:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 343 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]': /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:382:27: required from 'void seqan::_computeTrack(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSeqHValue&, const TSeqVValue&, const TSeqVIterator&, const TSeqVIterator&, const TScoringScheme&, TDPCell&, TDPCell&, const TColumnDescriptor&, const TDPProfile&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSeqHValue = SimpleType; TSeqVValue = SimpleType; TSeqVIterator = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; TScoringScheme = Score >; TDPCell = DPCell_ >; TColumnDescriptor = MetaColumnDescriptor, Tag >; TDPProfile = DPProfile_ >, Tag, TracebackOn, Tag > >, Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:453:18: required from 'void seqan::_computeTrack(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSeqHValue&, const TSeqVValue&, const TSeqVIterator&, const TSeqVIterator&, const TScoringScheme&, const TColumnDescriptor&, const TDPProfile&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSeqHValue = SimpleType; TSeqVValue = SimpleType; TSeqVIterator = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; TScoringScheme = Score >; TColumnDescriptor = MetaColumnDescriptor, Tag >; TDPProfile = DPProfile_ >, Tag, TracebackOn, Tag > >, Tag >]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:515:18: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&, const NavigateColumnWise&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag, String >, Alloc<> > >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_, String >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Packed > >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoringScheme = Score >; TBand = DPBandConfig >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; NavigateColumnWise = Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBandConfig&, const DPProfile_&) [with TDPScoreValue = DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = String >, Alloc<> >; TTraceMatHost = String; TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Packed > >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapScheme = Tag; TTraceFlag = TracebackOn, Tag > >; TExecPolicy = Tag; typename Value::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(DPContext, TTraceValue, TScoreMat, TTraceMat>&, String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const AlignConfig2&) [with TScoreValue = int; TGapSpec = Tag; TTraceValue = unsigned char; TScoreMat = String >, Alloc<> >; TTraceMat = String; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TDPScoutStateSpec = Tag; TSequenceH = Segment, Packed > >, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>; TScoreValue2 = int; TScoreSpec = Tag; TDPType = GlobalAlignment_<>; TBand = DPBandConfig >; TFreeEndGaps = FreeEndGaps_; TTraceConfig = TracebackOn, Tag > >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/find_verifier.h:112:39: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:415:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara/mapper.cpp:422:24: required from here /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 647 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ [100%] Linking CXX executable ../../bin/yara_mapper cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/yara && /usr/bin/cmake -E cmake_link_script CMakeFiles/yara_mapper.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -W -Wall -pedantic -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/yara_mapper.dir/mapper.cpp.o -o ../../bin/yara_mapper -lrt -lz -lbz2 In function 'allocate', inlined from '_allocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1532:28, inlined from '_reallocateStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1577:30, inlined from '_reserveStorage' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1679:83, inlined from 'reserve' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h:1785:50, inlined from 'resize' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1149:18, inlined from 'eraseBack' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/sequence/sequence_interface.h:1259:11, inlined from '_toText' at /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function '_toText': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [100%] Built target yara_mapper make[1]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/CMakeFiles 0 + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.jVP5RG + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64 ++ dirname /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd seqan-seqan-v2.4.0 + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64 'INSTALL=/usr/bin/install -p' -C build/library make: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/library' /usr/bin/cmake -S/builddir/build/BUILD/seqan-seqan-v2.4.0 -B/builddir/build/BUILD/seqan-seqan-v2.4.0/build/library --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/seqan-seqan-v2.4.0/build/library/CMakeFiles /builddir/build/BUILD/seqan-seqan-v2.4.0/build/library//CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/library' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/library' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/seqan-seqan-v2.4.0/build/library/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/library' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/library' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/share/doc/seqan2/LICENSE -- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/share/doc/seqan2/README.rst -- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/share/doc/seqan2/CHANGELOG.rst -- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/lib64/pkgconfig/seqan-2.pc -- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/lib64/cmake/seqan2/seqan-config.cmake -- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/include/seqan2/seqan/align.h -- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/include/seqan2/seqan/align/align_base.h -- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/include/seqan2/seqan/align/align_cols.h -- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/include/seqan2/seqan/align/align_config.h -- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/include/seqan2/seqan/align/align_interface_wrapper.h -- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/include/seqan2/seqan/align/align_iterator_base.h -- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/include/seqan2/seqan/align/align_metafunctions.h -- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/include/seqan2/seqan/align/align_traceback.h -- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/include/seqan2/seqan/align/aligned_sequence_concept.h -- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/include/seqan2/seqan/align/alignment_algorithm_tags.h -- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/include/seqan2/seqan/align/alignment_operations.h -- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/include/seqan2/seqan/align/dp_algorithm_impl.h -- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/include/seqan2/seqan/align/dp_align_simd_helper.h -- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/include/seqan2/seqan/align/dp_band.h -- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/include/seqan2/seqan/align/dp_cell.h -- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/include/seqan2/seqan/align/dp_cell_affine.h -- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/include/seqan2/seqan/align/dp_cell_dynamic.h -- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/include/seqan2/seqan/align/dp_cell_linear.h -- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/include/seqan2/seqan/align/dp_context.h -- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/include/seqan2/seqan/align/dp_formula.h -- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/include/seqan2/seqan/align/dp_formula_affine.h -- Installing: 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Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/include/seqan2/seqan/align/dp_meta_info.h -- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/include/seqan2/seqan/align/dp_profile.h -- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/include/seqan2/seqan/align/dp_scout.h -- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/include/seqan2/seqan/align/dp_scout_simd.h -- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/include/seqan2/seqan/align/dp_setup.h -- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/include/seqan2/seqan/align/dp_trace_segment.h -- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/include/seqan2/seqan/align/dp_traceback_adaptor.h -- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/include/seqan2/seqan/align/dp_traceback_impl.h -- Installing: 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-- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/include/seqan2/seqan/vcf_io/vcf_header_record.h -- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/include/seqan2/seqan/vcf_io/vcf_io_context.h -- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/include/seqan2/seqan/vcf_io/vcf_record.h -- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/include/seqan2/seqan/vcf_io/write_vcf.h -- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/include/seqan2/seqan/version.h make: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/library' + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64 'INSTALL=/usr/bin/install -p' -C build/Release make: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/cmake -S/builddir/build/BUILD/seqan-seqan-v2.4.0 -B/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release 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apps/dfi/CMakeFiles/dfi.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/dfi /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/dfi /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/dfi/CMakeFiles/dfi.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/dfi/CMakeFiles/dfi.dir/build.make apps/dfi/CMakeFiles/dfi.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/dfi/CMakeFiles/dfi.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 4%] Built target dfi /usr/bin/make -f apps/fiona/CMakeFiles/compute_gain.dir/build.make apps/fiona/CMakeFiles/compute_gain.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fiona /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fiona/CMakeFiles/compute_gain.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/fiona/CMakeFiles/compute_gain.dir/build.make apps/fiona/CMakeFiles/compute_gain.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/fiona/CMakeFiles/compute_gain.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 6%] Built target compute_gain /usr/bin/make -f apps/fiona/CMakeFiles/fiona.dir/build.make apps/fiona/CMakeFiles/fiona.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fiona /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fiona/CMakeFiles/fiona.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/fiona/CMakeFiles/fiona.dir/build.make apps/fiona/CMakeFiles/fiona.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/fiona/CMakeFiles/fiona.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 7%] Built target fiona /usr/bin/make -f apps/fiona/CMakeFiles/fiona_illumina.dir/build.make apps/fiona/CMakeFiles/fiona_illumina.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fiona /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fiona /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fiona/CMakeFiles/fiona_illumina.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/fiona/CMakeFiles/fiona_illumina.dir/build.make apps/fiona/CMakeFiles/fiona_illumina.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/fiona/CMakeFiles/fiona_illumina.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 9%] Built target fiona_illumina /usr/bin/make -f apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build.make apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fx_tools /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fx_tools /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build.make apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 10%] Built target fx_bam_coverage /usr/bin/make -f apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build.make apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/fx_tools /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fx_tools /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build.make apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 12%] Built target fx_fastq_stats /usr/bin/make -f apps/gustaf/CMakeFiles/gustaf.dir/build.make apps/gustaf/CMakeFiles/gustaf.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/gustaf /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/gustaf/CMakeFiles/gustaf.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/gustaf/CMakeFiles/gustaf.dir/build.make apps/gustaf/CMakeFiles/gustaf.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/gustaf/CMakeFiles/gustaf.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 14%] Built target gustaf /usr/bin/make -f apps/gustaf/CMakeFiles/gustaf_mate_joining.dir/build.make apps/gustaf/CMakeFiles/gustaf_mate_joining.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/gustaf /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/gustaf /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/gustaf/CMakeFiles/gustaf_mate_joining.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/gustaf/CMakeFiles/gustaf_mate_joining.dir/build.make apps/gustaf/CMakeFiles/gustaf_mate_joining.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/gustaf/CMakeFiles/gustaf_mate_joining.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 15%] Built target gustaf_mate_joining /usr/bin/make -f apps/insegt/CMakeFiles/insegt.dir/build.make apps/insegt/CMakeFiles/insegt.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/insegt /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/insegt /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/insegt/CMakeFiles/insegt.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/insegt/CMakeFiles/insegt.dir/build.make apps/insegt/CMakeFiles/insegt.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/insegt/CMakeFiles/insegt.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 17%] Built target insegt /usr/bin/make -f apps/mason2/CMakeFiles/mason_sim.dir/build.make apps/mason2/CMakeFiles/mason_sim.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2/CMakeFiles/mason_sim.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/mason2/CMakeFiles/mason_sim.dir/build.make apps/mason2/CMakeFiles/mason_sim.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/mason2/CMakeFiles/mason_sim.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 25%] Built target mason_sim /usr/bin/make -f apps/mason2/CMakeFiles/mason_genome.dir/build.make apps/mason2/CMakeFiles/mason_genome.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2/CMakeFiles/mason_genome.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/mason2/CMakeFiles/mason_genome.dir/build.make apps/mason2/CMakeFiles/mason_genome.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/mason2/CMakeFiles/mason_genome.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 26%] Built target mason_genome /usr/bin/make -f apps/mason2/CMakeFiles/mason_methylation.dir/build.make apps/mason2/CMakeFiles/mason_methylation.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2/CMakeFiles/mason_methylation.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/mason2/CMakeFiles/mason_methylation.dir/build.make apps/mason2/CMakeFiles/mason_methylation.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/mason2/CMakeFiles/mason_methylation.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 28%] Built target mason_methylation /usr/bin/make -f apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build.make apps/mason2/CMakeFiles/mason_frag_sequencing.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build.make apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 29%] Built target mason_frag_sequencing /usr/bin/make -f apps/mason2/CMakeFiles/mason_variator.dir/build.make apps/mason2/CMakeFiles/mason_variator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2/CMakeFiles/mason_variator.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/mason2/CMakeFiles/mason_variator.dir/build.make apps/mason2/CMakeFiles/mason_variator.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/mason2/CMakeFiles/mason_variator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 31%] Built target mason_variator /usr/bin/make -f apps/mason2/CMakeFiles/mason_materializer.dir/build.make apps/mason2/CMakeFiles/mason_materializer.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2/CMakeFiles/mason_materializer.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/mason2/CMakeFiles/mason_materializer.dir/build.make apps/mason2/CMakeFiles/mason_materializer.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/mason2/CMakeFiles/mason_materializer.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 31%] Built target mason_materializer /usr/bin/make -f apps/mason2/CMakeFiles/mason_simulator.dir/build.make apps/mason2/CMakeFiles/mason_simulator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2/CMakeFiles/mason_simulator.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/mason2/CMakeFiles/mason_simulator.dir/build.make apps/mason2/CMakeFiles/mason_simulator.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/mason2/CMakeFiles/mason_simulator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 32%] Built target mason_simulator /usr/bin/make -f apps/mason2/CMakeFiles/mason_splicing.dir/build.make apps/mason2/CMakeFiles/mason_splicing.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2/CMakeFiles/mason_splicing.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/mason2/CMakeFiles/mason_splicing.dir/build.make apps/mason2/CMakeFiles/mason_splicing.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/mason2/CMakeFiles/mason_splicing.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 34%] Built target mason_splicing /usr/bin/make -f apps/mason2/CMakeFiles/mason_tests.dir/build.make apps/mason2/CMakeFiles/mason_tests.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/mason2/CMakeFiles/mason_tests.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/mason2/CMakeFiles/mason_tests.dir/build.make apps/mason2/CMakeFiles/mason_tests.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/mason2/CMakeFiles/mason_tests.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 35%] Built target mason_tests /usr/bin/make -f apps/micro_razers/CMakeFiles/micro_razers.dir/build.make apps/micro_razers/CMakeFiles/micro_razers.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/micro_razers /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/micro_razers /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/micro_razers/CMakeFiles/micro_razers.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/micro_razers/CMakeFiles/micro_razers.dir/build.make apps/micro_razers/CMakeFiles/micro_razers.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/micro_razers/CMakeFiles/micro_razers.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 37%] Built target micro_razers /usr/bin/make -f apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build.make apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/ngs_roi /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build.make apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 39%] Built target roi_plot_thumbnails /usr/bin/make -f apps/ngs_roi/CMakeFiles/bam2roi.dir/build.make apps/ngs_roi/CMakeFiles/bam2roi.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/ngs_roi /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/ngs_roi/CMakeFiles/bam2roi.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/ngs_roi/CMakeFiles/bam2roi.dir/build.make apps/ngs_roi/CMakeFiles/bam2roi.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/ngs_roi/CMakeFiles/bam2roi.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 42%] Built target bam2roi /usr/bin/make -f apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build.make apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/ngs_roi /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/ngs_roi /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build.make apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 45%] Built target roi_feature_projection /usr/bin/make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 46%] Built target pair_align_global_1111 /usr/bin/make -f apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 46%] Built target pair_align_lcs /usr/bin/make -f apps/pair_align/lib/CMakeFiles/pair_align_local.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_local.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_local.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/pair_align/lib/CMakeFiles/pair_align_local.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_local.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_local.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 46%] Built target pair_align_local /usr/bin/make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 48%] Built target pair_align_global_0000 /usr/bin/make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 48%] Built target pair_align_global_0001 /usr/bin/make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 50%] Built target pair_align_global_0010 /usr/bin/make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 50%] Built target pair_align_global_0011 /usr/bin/make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 51%] Built target pair_align_global_0100 /usr/bin/make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 51%] Built target pair_align_global_0101 /usr/bin/make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 53%] Built target pair_align_global_0110 /usr/bin/make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 53%] Built target pair_align_global_0111 /usr/bin/make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 53%] Built target pair_align_global_1000 /usr/bin/make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 54%] Built target pair_align_global_1001 /usr/bin/make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 54%] Built target pair_align_global_1010 /usr/bin/make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 56%] Built target pair_align_global_1011 /usr/bin/make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 56%] Built target pair_align_global_1100 /usr/bin/make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 57%] Built target pair_align_global_1101 /usr/bin/make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 57%] Built target pair_align_global_1110 /usr/bin/make -f apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 59%] Built target pair_align_lib /usr/bin/make -f apps/pair_align/CMakeFiles/pair_align.dir/build.make apps/pair_align/CMakeFiles/pair_align.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/pair_align /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/pair_align/CMakeFiles/pair_align.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/pair_align/CMakeFiles/pair_align.dir/build.make apps/pair_align/CMakeFiles/pair_align.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/pair_align/CMakeFiles/pair_align.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 60%] Built target pair_align /usr/bin/make -f apps/param_chooser/CMakeFiles/param_chooser.dir/build.make apps/param_chooser/CMakeFiles/param_chooser.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/param_chooser /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/param_chooser/CMakeFiles/param_chooser.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/param_chooser/CMakeFiles/param_chooser.dir/build.make apps/param_chooser/CMakeFiles/param_chooser.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/param_chooser/CMakeFiles/param_chooser.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 62%] Built target param_chooser /usr/bin/make -f apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build.make apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/param_chooser /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/param_chooser /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build.make apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 64%] Built target test_funcs_param_chooser /usr/bin/make -f apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build.make apps/rabema/CMakeFiles/rabema_prepare_sam.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rabema /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build.make apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 65%] Built target rabema_prepare_sam /usr/bin/make -f apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build.make apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rabema /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build.make apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 67%] Built target rabema_build_gold_standard /usr/bin/make -f apps/rabema/CMakeFiles/rabema_evaluate.dir/build.make apps/rabema/CMakeFiles/rabema_evaluate.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rabema /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rabema/CMakeFiles/rabema_evaluate.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/rabema/CMakeFiles/rabema_evaluate.dir/build.make apps/rabema/CMakeFiles/rabema_evaluate.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/rabema/CMakeFiles/rabema_evaluate.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 68%] Built target rabema_evaluate /usr/bin/make -f apps/rabema/CMakeFiles/rabema_do_search.dir/build.make apps/rabema/CMakeFiles/rabema_do_search.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rabema /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rabema /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rabema/CMakeFiles/rabema_do_search.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/rabema/CMakeFiles/rabema_do_search.dir/build.make apps/rabema/CMakeFiles/rabema_do_search.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/rabema/CMakeFiles/rabema_do_search.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 70%] Built target rabema_do_search /usr/bin/make -f apps/razers/CMakeFiles/razers.dir/build.make apps/razers/CMakeFiles/razers.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/razers /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/razers/CMakeFiles/razers.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/razers/CMakeFiles/razers.dir/build.make apps/razers/CMakeFiles/razers.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/razers/CMakeFiles/razers.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 71%] Built target razers /usr/bin/make -f apps/razers3/CMakeFiles/razers3.dir/build.make apps/razers3/CMakeFiles/razers3.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/razers3 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/razers3/CMakeFiles/razers3.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/razers3/CMakeFiles/razers3.dir/build.make apps/razers3/CMakeFiles/razers3.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/razers3/CMakeFiles/razers3.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 73%] Built target razers3 /usr/bin/make -f apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build.make apps/razers3/CMakeFiles/razers3_simulate_reads.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/razers3 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build.make apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 75%] Built target razers3_simulate_reads /usr/bin/make -f apps/razers3/CMakeFiles/razers3_quality2prob.dir/build.make apps/razers3/CMakeFiles/razers3_quality2prob.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/razers3 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/razers3 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/razers3/CMakeFiles/razers3_quality2prob.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/razers3/CMakeFiles/razers3_quality2prob.dir/build.make apps/razers3/CMakeFiles/razers3_quality2prob.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/razers3/CMakeFiles/razers3_quality2prob.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 76%] Built target razers3_quality2prob /usr/bin/make -f apps/rep_sep/CMakeFiles/rep_sep.dir/build.make apps/rep_sep/CMakeFiles/rep_sep.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/rep_sep /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rep_sep /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/rep_sep/CMakeFiles/rep_sep.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/rep_sep/CMakeFiles/rep_sep.dir/build.make apps/rep_sep/CMakeFiles/rep_sep.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/rep_sep/CMakeFiles/rep_sep.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 78%] Built target rep_sep /usr/bin/make -f apps/sak/CMakeFiles/sak.dir/build.make apps/sak/CMakeFiles/sak.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sak /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/sak /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/sak/CMakeFiles/sak.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/sak/CMakeFiles/sak.dir/build.make apps/sak/CMakeFiles/sak.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/sak/CMakeFiles/sak.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 79%] Built target sak /usr/bin/make -f apps/sam2matrix/CMakeFiles/sam2matrix.dir/build.make apps/sam2matrix/CMakeFiles/sam2matrix.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sam2matrix /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/sam2matrix /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/sam2matrix/CMakeFiles/sam2matrix.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/sam2matrix/CMakeFiles/sam2matrix.dir/build.make apps/sam2matrix/CMakeFiles/sam2matrix.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/sam2matrix/CMakeFiles/sam2matrix.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 81%] Built target sam2matrix /usr/bin/make -f apps/samcat/CMakeFiles/samcat.dir/build.make apps/samcat/CMakeFiles/samcat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/samcat /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/samcat /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/samcat/CMakeFiles/samcat.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/samcat/CMakeFiles/samcat.dir/build.make apps/samcat/CMakeFiles/samcat.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/samcat/CMakeFiles/samcat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 81%] Built target samcat /usr/bin/make -f apps/searchjoin/CMakeFiles/s4_search.dir/build.make apps/searchjoin/CMakeFiles/s4_search.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/searchjoin /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/searchjoin/CMakeFiles/s4_search.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/searchjoin/CMakeFiles/s4_search.dir/build.make apps/searchjoin/CMakeFiles/s4_search.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/searchjoin/CMakeFiles/s4_search.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 82%] Built target s4_search /usr/bin/make -f apps/searchjoin/CMakeFiles/s4_join.dir/build.make apps/searchjoin/CMakeFiles/s4_join.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/searchjoin /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/searchjoin /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/searchjoin/CMakeFiles/s4_join.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/searchjoin/CMakeFiles/s4_join.dir/build.make apps/searchjoin/CMakeFiles/s4_join.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/searchjoin/CMakeFiles/s4_join.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 84%] Built target s4_join /usr/bin/make -f apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build.make apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqan_tcoffee /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/seqan_tcoffee /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build.make apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 85%] Built target seqan_tcoffee /usr/bin/make -f apps/seqcons2/CMakeFiles/seqcons2.dir/build.make apps/seqcons2/CMakeFiles/seqcons2.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/seqcons2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/seqcons2 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/seqcons2/CMakeFiles/seqcons2.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/seqcons2/CMakeFiles/seqcons2.dir/build.make apps/seqcons2/CMakeFiles/seqcons2.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/seqcons2/CMakeFiles/seqcons2.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 89%] Built target seqcons2 /usr/bin/make -f apps/sgip/CMakeFiles/sgip.dir/build.make apps/sgip/CMakeFiles/sgip.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sgip /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/sgip /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/sgip/CMakeFiles/sgip.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/sgip/CMakeFiles/sgip.dir/build.make apps/sgip/CMakeFiles/sgip.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/sgip/CMakeFiles/sgip.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 90%] Built target sgip /usr/bin/make -f apps/snp_store/CMakeFiles/snp_store.dir/build.make apps/snp_store/CMakeFiles/snp_store.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/snp_store /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/snp_store /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/snp_store/CMakeFiles/snp_store.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/snp_store/CMakeFiles/snp_store.dir/build.make apps/snp_store/CMakeFiles/snp_store.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/snp_store/CMakeFiles/snp_store.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 92%] Built target snp_store /usr/bin/make -f apps/splazers/CMakeFiles/splazers.dir/build.make apps/splazers/CMakeFiles/splazers.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/splazers /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/splazers /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/splazers/CMakeFiles/splazers.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/splazers/CMakeFiles/splazers.dir/build.make apps/splazers/CMakeFiles/splazers.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/splazers/CMakeFiles/splazers.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 93%] Built target splazers /usr/bin/make -f apps/stellar/CMakeFiles/stellar.dir/build.make apps/stellar/CMakeFiles/stellar.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/stellar /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/stellar 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/usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/yara /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/yara/CMakeFiles/yara_indexer.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/yara/CMakeFiles/yara_indexer.dir/build.make apps/yara/CMakeFiles/yara_indexer.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/yara/CMakeFiles/yara_indexer.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 98%] Built target yara_indexer /usr/bin/make -f apps/yara/CMakeFiles/yara_mapper.dir/build.make apps/yara/CMakeFiles/yara_mapper.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/yara /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/yara /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/yara/CMakeFiles/yara_mapper.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/make -f apps/yara/CMakeFiles/yara_mapper.dir/build.make apps/yara/CMakeFiles/yara_mapper.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[2]: Nothing to be done for 'apps/yara/CMakeFiles/yara_mapper.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [100%] Built target yara_mapper make[1]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/alf -- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/libexec/seqan2/examples/alf/LICENSE -- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/libexec/seqan2/examples/alf/README -- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/libexec/seqan2/examples/alf/example/small.fasta -- Installing: 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/builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/libexec/seqan2/examples/razers3/example/reads.fa -- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/libexec/seqan2/examples/razers3/example/reads2.fa -- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/rep_sep -- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/libexec/seqan2/examples/rep_sep/LICENSE -- Installing: /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/libexec/seqan2/examples/rep_sep/README gmake[1]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/cmake -S/builddir/build/BUILD/seqan-seqan-v2.4.0 -B/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/gmake -f CMakeFiles/Makefile2 sak_doc gmake[2]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/cmake -S/builddir/build/BUILD/seqan-seqan-v2.4.0 -B/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/CMakeFiles 2 /usr/bin/gmake -f CMakeFiles/Makefile2 apps/sak/CMakeFiles/sak_doc.dir/all gmake[3]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/gmake -f CMakeFiles/seqan_library.dir/build.make CMakeFiles/seqan_library.dir/depend gmake[4]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/CMakeFiles/seqan_library.dir/DependInfo.cmake --color= gmake[4]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/gmake -f CMakeFiles/seqan_library.dir/build.make CMakeFiles/seqan_library.dir/build gmake[4]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' gmake[4]: Nothing to be done for 'CMakeFiles/seqan_library.dir/build'. gmake[4]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 0%] Built target seqan_library /usr/bin/gmake -f apps/sak/CMakeFiles/sak.dir/build.make apps/sak/CMakeFiles/sak.dir/depend gmake[4]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-seqan-v2.4.0 /builddir/build/BUILD/seqan-seqan-v2.4.0/apps/sak /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/sak 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/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/sak /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/sak/CMakeFiles/sak_doc.dir/DependInfo.cmake --color= gmake[4]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/gmake -f apps/sak/CMakeFiles/sak_doc.dir/build.make apps/sak/CMakeFiles/sak_doc.dir/build gmake[4]: Entering directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [ 50%] Generating README.sak.txt cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/sak && ../../bin/sak --export-help=txt > README.sak.txt [100%] Generating sak.1 cd /builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release/apps/sak && ../../bin/sak --export-help=man > sak.1 gmake[4]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' [100%] Built target sak_doc gmake[3]: Leaving directory '/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' /usr/bin/cmake -E cmake_progress_start 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'/builddir/build/BUILD/seqan-seqan-v2.4.0/build/Release' + chmod a+x /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/alf /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/bam2roi /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/bed_sort.sh /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/bisar /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/casbar /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/compute_gain /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/dfi /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/fiona /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/four2three /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/fx_bam_coverage /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/gff_sort.sh /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/gustaf /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/gustaf_mate_joining 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/builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/rabema_evaluate /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/rabema_prepare_sam /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/razers /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/razers3 /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/rep_sep /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/roi_feature_projection /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/roi_plot_9.sh /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/roi_plot_thumbnails /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/roi_sort.sh /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/s4_join /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/s4_search /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/sak /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/sam2matrix /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/samcat /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/seqan_tcoffee /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/seqcons2 /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/sgip /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/snp_store /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/splazers /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/stellar /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/tree_recon /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/yara_indexer /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/yara_mapper + ln -s /usr/share/seqan2/pdf_plot_helper/plot.awk /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/plot.awk + ln -s /usr/share/seqan2/pdf_plot_helper/ps2pswLinks.gawk /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/ps2pswLinks.gawk + rm -rf /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/libexec/seqan2/examples/ngs_roi/R + rm -f /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/share/doc/seqan2/LICENSE + rm -f /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/share/doc/seqan2/CHANGELOG.rst + rm -f /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/share/doc/seqan2/README.rst + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 2.4.0-18.fc38 --unique-debug-suffix -2.4.0-18.fc38.x86_64 --unique-debug-src-base seqan2-2.4.0-18.fc38.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/seqan-seqan-v2.4.0 extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/alf extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/bam2roi extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/bisar extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/casbar extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/compute_gain extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/dfi extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/fiona extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/four2three extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/fx_bam_coverage extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/gustaf extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/gustaf_mate_joining extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/insegt extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/mason_frag_sequencing extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/mason_genome extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/mason_materializer extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/mason_methylation extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/mason_simulator extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/mason_splicing extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/mason_variator extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/micro_razers extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/pair_align extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/param_chooser extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/rabema_build_gold_standard extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/rabema_evaluate extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/rabema_prepare_sam extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/razers extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/razers3 extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/rep_sep extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/roi_feature_projection extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/roi_plot_thumbnails extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/s4_join extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/s4_search extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/sak extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/sam2matrix extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/samcat extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/seqan_tcoffee extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/seqcons2 extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/sgip extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/snp_store extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/splazers extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/stellar extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/tree_recon extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/yara_indexer extracting debug info from /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/bin/yara_mapper original debug info size: 679524kB, size after compression: 536064kB /usr/bin/sepdebugcrcfix: Updated 44 CRC32s, 0 CRC32s did match. 23498 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs mangling shebang in /usr/bin/roi_plot_9.sh from /bin/bash to #!/usr/bin/bash mangling shebang in /usr/bin/roi_sort.sh from /bin/bash to #!/usr/bin/bash mangling shebang in /usr/bin/gff_sort.sh from /bin/bash to #!/usr/bin/bash mangling shebang in /usr/bin/bed_sort.sh from /bin/bash to #!/usr/bin/bash + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 + /usr/lib/rpm/redhat/brp-python-hardlink Processing files: seqan2-apps-2.4.0-18.fc38.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.jhPHNO + umask 022 + cd /builddir/build/BUILD + cd seqan-seqan-v2.4.0 + DOCDIR=/builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/share/doc/seqan2-apps + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/share/doc/seqan2-apps + cp -pr README.rst /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/share/doc/seqan2-apps + cp -pr CHANGELOG.rst /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/share/doc/seqan2-apps + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.zZvpnx + umask 022 + cd /builddir/build/BUILD + cd seqan-seqan-v2.4.0 + LICENSEDIR=/builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/share/licenses/seqan2-apps + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/share/licenses/seqan2-apps + cp -pr LICENSE /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/share/licenses/seqan2-apps + cp -pr apps/alf/alf-LICENSE apps/bs_tools/bs_tools-LICENSE apps/dfi/dfi-LICENSE apps/fiona/fiona-LICENSE apps/fx_tools/fx_tools-LICENSE apps/gustaf/gustaf-LICENSE apps/insegt/insegt-LICENSE apps/mason2/mason2-LICENSE apps/micro_razers/micro_razers-LICENSE apps/ngs_roi/ngs_roi-LICENSE apps/pair_align/pair_align-LICENSE apps/param_chooser/param_chooser-LICENSE apps/rabema/rabema-LICENSE apps/razers/razers-LICENSE apps/razers3/razers3-LICENSE apps/rep_sep/rep_sep-LICENSE apps/sak/sak-LICENSE apps/sam2matrix/sam2matrix-LICENSE apps/samcat/samcat-LICENSE apps/searchjoin/searchjoin-LICENSE apps/seqan_tcoffee/seqan_tcoffee-LICENSE apps/seqcons2/seqcons2-LICENSE apps/sgip/sgip-LICENSE apps/snp_store/snp_store-LICENSE apps/splazers/splazers-LICENSE apps/stellar/stellar-LICENSE apps/tree_recon/tree_recon-LICENSE apps/yara/yara-LICENSE /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/share/licenses/seqan2-apps + cp -pr apps/rabema/rabema-COPYING /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/share/licenses/seqan2-apps + RPM_EC=0 ++ jobs -p + exit 0 warning: absolute symlink: /usr/bin/plot.awk -> /usr/share/seqan2/pdf_plot_helper/plot.awk warning: absolute symlink: /usr/bin/ps2pswLinks.gawk -> /usr/share/seqan2/pdf_plot_helper/ps2pswLinks.gawk Provides: seqan = 0:2.4.0-18.fc38 seqan2-apps = 2.4.0-18.fc38 seqan2-apps(x86-64) = 2.4.0-18.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/bash libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgcc_s.so.1(GCC_3.4)(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(GOMP_4.5)(64bit) libgomp.so.1(OMP_1.0)(64bit) libgomp.so.1(OMP_2.0)(64bit) libgomp.so.1(OMP_3.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.23)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.11)(64bit) libstdc++.so.6(CXXABI_1.3.13)(64bit) libstdc++.so.6(CXXABI_1.3.2)(64bit) libstdc++.so.6(CXXABI_1.3.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.10)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.17)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.19)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.22)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libz.so.1()(64bit) rtld(GNU_HASH) Obsoletes: seqan <= 0:1.4.2 Processing files: seqan2-headers-2.4.0-18.fc38.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.1wyO9c + umask 022 + cd /builddir/build/BUILD + cd seqan-seqan-v2.4.0 + DOCDIR=/builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/share/doc/seqan2-headers + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/share/doc/seqan2-headers + cp -pr README.rst /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/share/doc/seqan2-headers + cp -pr CHANGELOG.rst /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/share/doc/seqan2-headers + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.MCg4T7 + umask 022 + cd /builddir/build/BUILD + cd seqan-seqan-v2.4.0 + LICENSEDIR=/builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/share/licenses/seqan2-headers + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/share/licenses/seqan2-headers + cp -pr include/seqan/LICENSE /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64/usr/share/licenses/seqan2-headers + RPM_EC=0 ++ jobs -p + exit 0 Provides: bundled(bzip2stream) bundled(zipstream) cmake(seqan) pkgconfig(seqan-2) = 2.4.0 seqan2-headers = 2.4.0-18.fc38 seqan2-headers(x86-64) = 2.4.0-18.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/pkg-config cmake-filesystem(x86-64) pkgconfig(zlib) Processing files: seqan2-examples-2.4.0-18.fc38.x86_64 Provides: seqan2-examples = 2.4.0-18.fc38 seqan2-examples(x86-64) = 2.4.0-18.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: seqan2-debugsource-2.4.0-18.fc38.x86_64 Provides: seqan2-debugsource = 2.4.0-18.fc38 seqan2-debugsource(x86-64) = 2.4.0-18.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: seqan2-apps-debuginfo-2.4.0-18.fc38.x86_64 Provides: debuginfo(build-id) = 005ee9340330e447caaea6e4e9f83846db5d5116 debuginfo(build-id) = 052c18fdb265b621517567e7176452d8c56d4ef1 debuginfo(build-id) = 09752ca3ee4024604653f51c3ca18769db8e8dce debuginfo(build-id) = 0aa29999818b8031dc337a3025a688520cb5508a debuginfo(build-id) = 0ae99d7b871b761b9e81ec6b3c77bef8db379ea7 debuginfo(build-id) = 2d1245c3567355cbcb6a8934d1aa52583146fd9a debuginfo(build-id) = 30ef953693bb50761863c9a802a94252a872502c debuginfo(build-id) = 357bfebe6847567087ec644f6ca2ffa2e5f8ee6b debuginfo(build-id) = 35ec548503ae128bcd3729b3494cf8323f87c0c0 debuginfo(build-id) = 36ab77ca78ea16c0e9b80472a32b4a8f63792d9f debuginfo(build-id) = 395ec6400e01dc84443033d462952a34bd0ec173 debuginfo(build-id) = 440701666199df83366fad4b6715035e1298e842 debuginfo(build-id) = 46be2cb00c68a5e21752c583a55d01c54e3b89b5 debuginfo(build-id) = 47de50115812ea4ef501c046b332f588917a9e49 debuginfo(build-id) = 4c1968cd4f596bf5c38d1a232f9c1dfa34fb3299 debuginfo(build-id) = 56067c6f2c0fa7e39d9ff802c87616337eba2206 debuginfo(build-id) = 6a7789f23047024cb576a747e1fa58128fee70a5 debuginfo(build-id) = 7a3581f4e1bbdcaf1853a74ed40dfc79f13e42e7 debuginfo(build-id) = 7abd042e15248186f381a5ee11d4a6a402a00d5b debuginfo(build-id) = 7b3a6f783d98c714a4c3468c23fa4187885b0378 debuginfo(build-id) = 83a5d24076f02d46b70adf804e7ad538034f4fda debuginfo(build-id) = 88a63dc0d8a387a837eba7a9df00b009d9598816 debuginfo(build-id) = 97a4ae78261ad6b4578961591a8a73b642881d52 debuginfo(build-id) = 9aa703b48a9b4875301a0d14ad3bf28bb3d21da0 debuginfo(build-id) = 9d1ca1ce6ac7bed3767cf140bfa88a962ff7ad9d debuginfo(build-id) = 9e0f70a78e9c554adbb588a58d11cc28852dd552 debuginfo(build-id) = a513bbe165ac1ed40f561d100ebd5f65fb24d7d2 debuginfo(build-id) = a719f264fb21f80fa73bc4c99a01df769286b22f debuginfo(build-id) = a7f29ff65ae8a94af525e3eec4e3723786e0bb6d debuginfo(build-id) = bb823ca35a405fbbec5b0d2ca13b59211e8793cb debuginfo(build-id) = bc57a1b0b9dff06a2eb03ee3da77337f030237e0 debuginfo(build-id) = bc5e6ab62f1d35d10a62d2779af7a4416c7784db debuginfo(build-id) = c61143f07f8d6b9a5423d3213dda7003c3829fb3 debuginfo(build-id) = d69a3a6014252e22b6723b88b5034e32825d1201 debuginfo(build-id) = d80cd1b0ddfa66f0861f593cb297c6f3eaa2f920 debuginfo(build-id) = ded97c0cb330b1073ee09f237d55288e288d81ba debuginfo(build-id) = e01cedaa5f6d332f1657f4c8de2ab465213f8695 debuginfo(build-id) = e14280b1b5ab0ff079632371d4a01277de99e280 debuginfo(build-id) = e450072b5cbafbbefcafffb2875e5bf46b80ef48 debuginfo(build-id) = e58ff35094b873a7f92304a200f564789d193b8e debuginfo(build-id) = e9df22200b030bbdd9dc21043f77307b61c962fd debuginfo(build-id) = f166887ab4e988fe2d597c484fde53b0075c48ca debuginfo(build-id) = f4ab43873526617d447b5b0d9ee01bc7e5f4af22 debuginfo(build-id) = fc93f9f768f1c318cd05518d4746ea96b122959b seqan2-apps-debuginfo = 2.4.0-18.fc38 seqan2-apps-debuginfo(x86-64) = 2.4.0-18.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: seqan2-debugsource(x86-64) = 2.4.0-18.fc38 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64 Wrote: /builddir/build/RPMS/seqan2-apps-2.4.0-18.fc38.x86_64.rpm Wrote: /builddir/build/RPMS/seqan2-headers-2.4.0-18.fc38.x86_64.rpm Wrote: /builddir/build/RPMS/seqan2-debugsource-2.4.0-18.fc38.x86_64.rpm Wrote: /builddir/build/RPMS/seqan2-examples-2.4.0-18.fc38.x86_64.rpm Wrote: /builddir/build/RPMS/seqan2-apps-debuginfo-2.4.0-18.fc38.x86_64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.TBFU04 + umask 022 + cd /builddir/build/BUILD + cd seqan-seqan-v2.4.0 + /usr/bin/rm -rf /builddir/build/BUILDROOT/seqan2-2.4.0-18.fc38.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.tP3gUT + umask 022 + cd /builddir/build/BUILD + rm -rf seqan-seqan-v2.4.0 seqan-seqan-v2.4.0.gemspec + RPM_EC=0 ++ jobs -p + exit 0 RPM build warnings: absolute symlink: /usr/bin/plot.awk -> /usr/share/seqan2/pdf_plot_helper/plot.awk absolute symlink: /usr/bin/ps2pswLinks.gawk -> /usr/share/seqan2/pdf_plot_helper/ps2pswLinks.gawk Finish: rpmbuild seqan2-2.4.0-18.fc38.src.rpm Finish: build phase for seqan2-2.4.0-18.fc38.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1674330935.721363/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-x86_64-1674330935.721363/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-x86_64-1674330935.721363/root/var/log/dnf.log INFO: Done(/var/lib/copr-rpmbuild/results/seqan2-2.4.0-18.fc38.src.rpm) Config(child) 57 minutes 48 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool