%global _description %{expand: Arbor is a high-performance library for Computational Neuroscience simulations. Some key features include: - Asynchronous spike exchange that overlaps compute and communication. - Efficient sampling of voltage and current on all back ends. - Efficient implementation of all features on GPU. - Reporting of memory and energy consumption (when available on platform). - An API for addition of new cell types, e.g. LIF and Poisson spike generators. - Validation tests against numeric/analytic models and NEURON. Documentation is available at https://arbor.readthedocs.io/en/latest/ } # Best to start with the serial version when debugging build failures %bcond_without mpich %bcond_without openmpi %bcond_without tests #%%global commit fb5d4ea736282dce14c3284bc5db748b082db957 #%%global checkoutdate 20200225 #%%global shortcommit %%(c=%%{commit}; echo ${c:0:7}) Name: arbor Version: 0.3 Release: 7%{?dist} Summary: Multi-compartment neural network simulation library License: BSD URL: https://github.com/arbor-sim/%{name} %if 0%{?commit:1} Source0: %{url}/archive/%{commit}/%{name}-%{shortcommit}.tar.gz %else Source0: %{url}/archive/v%{version}/%{name}-%{version}.tar.gz %endif # Use the system copy of pybind11 # https://github.com/arbor-sim/arbor/issues/915 Patch0: %{name}-0001-Use-system-pybind11.patch # This patch changes ext/CMakeLists.txt for automatically using tinyopt libraries by cmake command. Patch1: %{name}-tinyopt_cmake.patch # Random123 does not support these ExcludeArch: mips64r2 mips32r2 s390 s390x BuildRequires: cmake BuildRequires: gcc-c++ BuildRequires: git-core BuildRequires: gtest-devel BuildRequires: json-devel BuildRequires: libunwind-devel BuildRequires: pybind11-devel BuildRequires: python3-devel BuildRequires: python3-setuptools BuildRequires: Random123-devel BuildRequires: tclap-devel Provides: python3-%{name} = %{version}-%{release} %{?python_provide:%python_provide python3-%{name}} # For validation, but we don't have these BRs # BuildRequires: julia julia-sundials julia-unitful julia-JSON %description %{_description} %package devel Summary: Development files for %{name} Requires: %{name}%{?_isa} = %{version}-%{release} Provides: %{name}-static = %{version}-%{release} %description devel %{_description} %package doc # Does not require the main package, since it may be installed by people using # the MPI builds Summary: Documentation for %{name} BuildRequires: python3-sphinx BuildRequires: python3-sphinx_rtd_theme %description doc %{_description} %if %{with mpich} %package mpich Summary: MPICH build for %{name} BuildRequires: mpich-devel BuildRequires: rpm-mpi-hooks BuildRequires: python3-mpi4py-mpich Requires: mpich Requires: python3-mpich Requires: python3-mpi4py-mpich Provides: python3-%{name}-mpich = %{version}-%{release} %{?python_provide:%python_provide python3-%{name}-mpich} %description mpich %{_description} %package mpich-devel Summary: Development files for %{name}-mpich Requires: %{name}-mpich%{?_isa} = %{version}-%{release} Provides: %{name}-mpich-static = %{version}-%{release} %description mpich-devel %{_description} %endif %if %{with openmpi} %package openmpi Summary: OpenMPI build for %{name} BuildRequires: openmpi-devel BuildRequires: rpm-mpi-hooks BuildRequires: python3-mpi4py-openmpi Requires: openmpi Requires: python3-openmpi Requires: python3-mpi4py-openmpi Provides: python3-%{name}-openmpi = %{version}-%{release} %{?python_provide:%python_provide python3-%{name}-openmpi} %description openmpi %{_description} %package openmpi-devel Summary: Development files for %{name}-openmpi Requires: %{name}-openmpi%{?_isa} = %{version}-%{release} Provides: %{name}-openmpi-static = %{version}-%{release} %description openmpi-devel %{_description} %endif %prep %if 0%{?commit:1} %autosetup -n %{name}-%{commit} -S git %else %autosetup -p1 %endif # Do not build external libraries # tclap and json and random123 sed -i -e 's/ ext-random123//' CMakeLists.txt # Remove ext folders, unbundle libraries rm -vrf ext/google-benchmark ext/json ext/random123 ext/sphinx_rtd_theme mv ext/tinyopt/LICENSE ext/tinyopt/LICENSE-tinyopt # Disable doc build: we built it ourselves sed -i '/add_subdirectory(doc)/ d' CMakeLists.txt # tclap and json are both header only find . -type f -name "CMakeLists.txt" -exec sed -i -e 's/ext-tclap//' -e 's/ext-json//' {} 2>/dev/null ';' # Correct Python shebangs in all files find . -type f -name "*" -exec sed -i 's|^#![ ]*/usr/bin/env.*python.*$|#!/usr/bin/python3|' {} 2>/dev/null ';' # We set it, remove the hard coded bits from CMakeLists.txt sed -i '/set(arb_pyexecdir/ d' python/CMakeLists.txt # builddir for serial mkdir build-serial %if %{with mpich} mkdir build-mpich %endif %if %{with openmpi} mkdir build-openmpi %endif %build # Best to use && so that if anything in the chain fails, the build also fails # straight away %global do_cmake_config %{expand: \ echo echo "*** BUILDING %{name}-%{version}$MPI_COMPILE_TYPE ***" echo pushd build$MPI_COMPILE_TYPE && cmake \\\ -DCMAKE_C_FLAGS_RELEASE:STRING="-DNDEBUG" \\\ -DCMAKE_CXX_FLAGS_RELEASE:STRING="-DNDEBUG" \\\ -DCMAKE_Fortran_FLAGS_RELEASE:STRING="-DNDEBUG" \\\ -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON \\\ -DCMAKE_INSTALL_PREFIX:PATH=$MPI_HOME \\\ -DINCLUDE_INSTALL_DIR:PATH=$MPI_INCLUDE \\\ -DLIB_INSTALL_DIR:PATH=$MPI_LIB \\\ -DSYSCONF_INSTALL_DIR:PATH=%{_sysconfdir} \\\ -DSHARE_INSTALL_PREFIX:PATH=%{_datadir} \\\ -DCMAKE_SKIP_RPATH:BOOL=ON \\\ -DCMAKE_BUILD_TYPE:STRING="release" \\\ %ifarch x86_64 i686 aarch64 -DARB_VECTORIZE:BOOL=ON \\\ %else -DARB_VECTORIZE:BOOL=OFF \\\ %endif %ifarch %{power64} -DARB_ARCH=power8 \\\ %endif -DARB_WITH_MPI:BOOL=$MPI_YES \\\ -DARB_WITH_GPU:BOOL=OFF \\\ %ifnarch armv7hl -DARB_ARCH:STRING="native" \\\ %endif -DCMAKE_INSTALL_LIBDIR=%{_lib} \\\ -DARB_WITH_PYTHON:BOOL=ON \\\ -Darb_pyexecdir:STRING=$MPI_PYTHON3_SITEARCH \\\ %if "%{_lib}" == "lib64" -DLIB_SUFFIX=64 .. && %else -DLIB_SUFFIX="" .. && %endif popd || exit -1; # Upstream only supports static libraries # https://github.com/arbor-sim/arbor/issues/916 # -DBUILD_SHARED_LIBS:BOOL=ON \\\ # Missing BRs # -DARB_BUILD_VALIDATION_DATA:BOOL=ON \\\ } %global do_make_build %{expand: \ %make_build -C build$MPI_COMPILE_TYPE || exit -1 %make_build -C build$MPI_COMPILE_TYPE tests || exit -1 } # Build serial version, dummy arguments %global __cc gcc %global __cxx g++ %set_build_flags export MPI_SUFFIX="" export MPI_HOME=%{_prefix} export MPI_INCLUDE=%{_includedir} export MPI_LIB=%{_libdir} export MPI_YES=OFF export MPI_COMPILE_TYPE="-serial" export MPI_PYTHON3_SITEARCH=%{python3_sitearch} %{do_cmake_config} %{do_make_build} # Manually make docs in the serial build sphinx-build-%{python3_version} -b html doc html # Remove uneeded dotfiles rm -rfv html/{.buildinfo,.doctrees} # Build mpich version %if %{with mpich} %{_mpich_load} %global __cc mpicc %global __cxx mpicxx %set_build_flags export CC=mpicc export CXX=mpicxx export FC=mpif90 export F77=mpif77 export MPI_YES=ON export MPI_COMPILE_TYPE="-mpich" %{do_cmake_config} %{do_make_build} %{_mpich_unload} %endif # Build OpenMPI version %if %{with openmpi} %{_openmpi_load} %global __cc mpicc %global __cxx mpicxx %set_build_flags export CC=mpicc export CXX=mpicxx export FC=mpif90 export F77=mpif77 export MPI_YES=ON # Python 3 export MPI_COMPILE_TYPE="-openmpi" %{do_cmake_config} %{do_make_build} %{_openmpi_unload} %endif %install # Install everything %global do_install %{expand: \ echo echo "*** INSTALLING %{name}-%{version}$MPI_COMPILE_TYPE ***" echo %make_install -C build$MPI_COMPILE_TYPE || exit -1 } # install serial version export MPI_SUFFIX="" export MPI_HOME=%{_prefix} export MPI_BIN=%{_bindir} export MPI_YES=OFF export MPI_COMPILE_TYPE="-serial" %{do_install} # Install MPICH version %if %{with mpich} %{_mpich_load} export MPI_COMPILE_TYPE="-mpich" %{do_install} # Place in correct mpi libdir %if "%{_lib}" == "lib64" mv -v $RPM_BUILD_ROOT/%{_libdir}/mpich/lib64 $RPM_BUILD_ROOT/$MPI_LIB/ %endif pushd $RPM_BUILD_ROOT/$MPI_BIN mv -v modcc{,$MPI_SUFFIX} -v popd %{_mpich_unload} %endif # Install OpenMPI version %if %{with openmpi} %{_openmpi_load} export MPI_COMPILE_TYPE="-openmpi" %{do_install} # Correct location %if "%{_lib}" == "lib64" mv -v $RPM_BUILD_ROOT/%{_libdir}/openmpi/lib64 $RPM_BUILD_ROOT/$MPI_LIB/ %endif pushd $RPM_BUILD_ROOT/$MPI_BIN mv -v modcc{,$MPI_SUFFIX} -v popd %{_openmpi_unload} %endif %if %{with tests} %check # Run for serial only. our builders are not using MPI # these tests segfault, filter out pushd build-serial ./bin/unit --gtest_filter=-*mc_event_delivery*:*fvm_lowered*:*mc_cell_group* popd %endif %files %license LICENSE ext/tinyopt/LICENSE-tinyopt %doc README.md %{_bindir}/modcc %{python3_sitearch}/%{name} %files devel %{_includedir}/%{name} %{_includedir}/%{name}env %{_libdir}/cmake/%{name} %{_libdir}/libarbor.a %{_libdir}/libarborenv.a %files doc %license LICENSE %doc html %if %{with mpich} %files mpich %doc README.md %license LICENSE ext/tinyopt/LICENSE-tinyopt %{_libdir}/mpich/bin/modcc_mpich %{python3_sitearch}/mpich/%{name} %files mpich-devel %{_libdir}/mpich/include/%{name} %{_libdir}/mpich/include/%{name}env %{_libdir}/mpich/lib/cmake/%{name} %{_libdir}/mpich/lib/libarbor.a %{_libdir}/mpich/lib/libarborenv.a %endif %if %{with openmpi} %files openmpi %doc README.md %license LICENSE ext/tinyopt/LICENSE-tinyopt %{_libdir}/openmpi/bin/modcc_openmpi %{python3_sitearch}/openmpi/%{name} %files openmpi-devel %{_libdir}/openmpi/include/%{name} %{_libdir}/openmpi/include/%{name}env %{_libdir}/openmpi/lib/cmake/%{name} %{_libdir}/openmpi/lib/libarbor.a %{_libdir}/openmpi/lib/libarborenv.a %endif %changelog * Mon Oct 05 2020 Ankur Sinha - 0.3-7 - Explicitly require setuptools * Fri Aug 28 2020 Jeff Law - 0.3-6 - Re-enable LTO - Do not force -march=native on armv7hl so that build architecture does not bleed into the binaries. This should probably be done on all targets * Sat Aug 01 2020 Fedora Release Engineering - 0.3-5 - Second attempt - Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild * Mon Jul 27 2020 Jeff Law - 0.3-4 - Disable LTO for armv7hl build * Mon Jul 27 2020 Fedora Release Engineering - 0.3-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild * Sun Jun 28 2020 Ankur Sinha - 0.3-2 - Update build flags to ensure CC and CXX are set correctly - https://lists.fedoraproject.org/archives/list/scitech@lists.fedoraproject.org/thread/BNKLXKY4O7BOTZ7LH7XDUTQO6FG2UWUT/#BNKLXKY4O7BOTZ7LH7XDUTQO6FG2UWUT * Mon Jun 08 2020 Antonio Trande - 0.3-2 - Move Provides lines to runtime packages - Add patch for using tinyopt libraries * Sat Jun 06 2020 Antonio Trande - 0.3-1 - Release 0.3 * Tue May 26 2020 Miro Hrončok - 0.2.2-8.20200225gitfb5d4ea736282dce14c3284bc5db748b082db957 - Rebuilt for Python 3.9 * Thu Apr 02 2020 Björn Esser - 0.2.2-7.20200225gitfb5d4ea736282dce14c3284bc5db748b082db957 - Fix string quoting for rpm >= 4.16 * Wed Feb 26 2020 Ankur Sinha - 0.2.2-5.20200226gitfb5d4ea736282dce14c3284bc5db748b082db957 - Use new snapshot that fixes errors on 32 bit systems - No longer excludes i686 and armv7hl - Drop unneeded patch. * Sun Feb 23 2020 Ankur Sinha - 0.2.2-5.20200223gitf12f934f365d9e68f01bfd857982be80da2ddd10 - Build from latest upstream snapshot - Freshen patch - Add exclude arches * Tue Jan 28 2020 Fedora Release Engineering - 0.2.2-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild * Tue Dec 10 2019 Ankur Sinha - 0.2.2-3 - Enable tests - Add patch for test crash * Mon Dec 09 2019 Ankur Sinha - 0.2.2-2 - Remove arch info in provides for static - Temporarily disable tests - use python3-devel - Add documentation in separate sub-package - add python3-{mpich,openmpi} as requires that own MPI_PYTHON3_SITEARCH directories - Improve summaries for sub-packages to please rpmlint * Sat Dec 07 2019 Ankur Sinha - 0.2.2-1 - Update to latest release * Sun Jan 13 2019 Ankur Sinha - 0.1-1 - Initial rpm package