# These are problematic, sometimes they randomly fail or hang %bcond_with xvfb_tests # Does not support python2 at all %global srcname fslpy %global desc \ The fslpy project is a FSL programming library written in Python. It is used by \ FSLeyes. Name: python-%{srcname} Version: 3.4.0 Release: 1%{?dist} Summary: The FSL Python Library License: ASL 2.0 URL: https://pypi.python.org/pypi/%{srcname} Source0: %pypi_source BuildArch: noarch BuildRequires: python3-devel BuildRequires: dcm2niix BuildRequires: %{py3_dist coverage} BuildRequires: %{py3_dist deprecation} BuildRequires: %{py3_dist h5py} BuildRequires: %{py3_dist mock} BuildRequires: %{py3_dist numpy} BuildRequires: %{py3_dist nibabel} > 2.2.1 BuildRequires: %{py3_dist pytest pytest-cov} BuildRequires: %{py3_dist pillow} BuildRequires: %{py3_dist scipy} BuildRequires: %{py3_dist setuptools} BuildRequires: %{py3_dist sphinx} BuildRequires: %{py3_dist wxpython} BuildRequires: xorg-x11-server-Xvfb %description %{desc} %{?python_enable_dependency_generator} %package -n python3-%{srcname} Summary: %{summary} %py_provides python3-%{srcname} %description -n python3-%{srcname} %{desc} %package doc Summary: %{summary} BuildRequires: %{py3_dist sphinx_rtd_theme} %description doc This package contains documentation for %{name}. %prep %autosetup -n %{srcname}-%{version} rm -rfv %{srcname}.egg-info # For the dep generator to pick up cat requirements-extra.txt >> requirements.txt # Remove * from versions, rpm dep generator can't handle it: # https://bugzilla.redhat.com/show_bug.cgi?id=1758141 # Fixed in F32+, but keeping it here for F31 sed -i -e 's/numpy.*/numpy>=1.0,<2.0/' -e 's/six.*/six>=1.0,<2.0/' -e 's/wxpython.*/wxpython>=4.0,<5.0/' -e '/dataclasses/ d' requirements.txt # remove unneeded shebangs find . -type f -name "*.py" -exec sed -i '/^#![ ]*\/usr\/bin\/env python$/ d' {} 2>/dev/null ';' # some scripts have the shebang, so we correct these find . -type f -name "*.py" -exec sed -i 's/#![ ]*\/usr\/bin\/env python$/#!\/usr\/bin\/python3/' {} 2>/dev/null ';' %build %py3_build # Build documentation PYTHONPATH=. sphinx-build-3 doc html # Remove build artefacts rm -frv html/.buildinfo rm -frv html/.doctrees %install %py3_install # Remove test packages that are installed in site packages rm -rfv %{buildroot}/%{python3_sitelib}/tests/ %check # For F < 33: ppc64le bug with numpy, pillow # https://bugzilla.redhat.com/show_bug.cgi?id=1738752 # https://lists.fedoraproject.org/archives/list/devel@lists.fedoraproject.org/message/BEKJIVVK4D73RAV6C26ZBV47S4R7DULX/ %if 0%{?fedora} >= 33 %if %{with xvfb_tests} # From https://git.fmrib.ox.ac.uk/fsl/fslpy/blob/master/.ci/test_template.sh xvfb-run pytest-3 tests/test_idle.py sleep 10 # Sometimes fails, sometimes passes xvfb-run pytest-3 tests/test_platform.py || exit 0 %endif # Ignore tests that have already been done # Ignore immv_imcp because it requires a "nobody" user # Ignore tests that require downloading data. # Ignore tests requiring trimesh # Ignore test using dcm2niix # Ignore failing test: https://github.com/pauldmccarthy/fslpy/issues/10 pytest-3 tests -m "not longtest" \ --ignore=tests/test_idle.py --ignore=tests/test_platform.py \ --ignore=tests/test_immv_imcp.py --ignore=tests/test_atlases.py \ --ignore=tests/test_atlases_query.py \ --ignore=tests/test_scripts/test_atlasq_list_summary.py \ --ignore=tests/test_scripts/test_atlasq_ohi.py \ --ignore=tests/test_scripts/test_atlasq_query.py --ignore=tests/test_callfsl.py \ --ignore=tests/test_mesh.py --ignore=tests/test_dicom.py \ --ignore=tests/test_parse_data.py \ --ignore=tests/test_scripts/test_fsl_apply_x5.py %endif %files -n python3-%{srcname} %license LICENSE COPYRIGHT %doc README.rst %{python3_sitelib}/fsl %{python3_sitelib}/%{srcname}-%{version}-py%{python3_version}.egg-info %{_bindir}/atlasq %{_bindir}/atlasquery %{_bindir}/fsl_apply_x5 %{_bindir}/fsl_ents %{_bindir}/fsl_convert_x5 %{_bindir}/imcp %{_bindir}/imglob %{_bindir}/immv %{_bindir}/resample_image %{_bindir}/Text2Vest %{_bindir}/Vest2Text %{_bindir}/fsl_abspath %{_bindir}/imln %{_bindir}/imrm %{_bindir}/imtest %{_bindir}/remove_ext %files doc %license LICENSE COPYRIGHT %doc html %changelog * Sat Nov 28 2020 Ankur Sinha - 3.4.0-1 - Update to 3.4.0 * Sun Oct 18 2020 Ankur Sinha - 3.3.3-1 - Update to latest patch release * Thu Oct 01 2020 Ankur Sinha - 3.3.0-2 - Disable tests to make it build on F32 ppc * Thu Oct 01 2020 Ankur Sinha - 3.3.0-1 - Update to latest release * Mon Sep 07 2020 Ankur Sinha - 3.2.2-3 - Use quotes * Mon Sep 07 2020 Ankur Sinha - 3.2.2-2 - Add workaround to fix tests * Fri Sep 04 2020 Ankur Sinha - 3.2.2-1 - Update to new release * Mon Jul 06 2020 Ankur Sinha - 3.2.0-4 - Include patch to dump data * Fri Jul 03 2020 Ankur Sinha - 3.2.0-3 - Remove dataclasses that is part of Python 3.7+ - rhbz#1851358 * Thu Jun 25 2020 Ankur Sinha - 3.2.0-2 - Explicitly BR setuptools * Sun Jun 21 2020 Ankur Sinha - 3.2.0-1 - Update to 3.2.0 * Fri May 01 2020 Ankur Sinha - 3.0.1-1 - Update to 3.0.1 * Fri Feb 21 2020 Ankur Sinha - 2.8.1-1 - Update to 2.8.1 * Thu Jan 30 2020 Ankur Sinha - 2.8.0-2 - Temporarily patch requirements to work around dep-generator-bug - https://bugzilla.redhat.com/show_bug.cgi?id=1758141 * Thu Jan 30 2020 Ankur Sinha - 2.8.0-1 - Update to 2.8.0 - drops rtree=0.8.3 requirement (#1794617) - enable fixed tests * Thu Jan 30 2020 Fedora Release Engineering - 2.7.0-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild * Thu Nov 14 2019 Aniket Pradhan - 2.7.0-1 - Update to 2.7.0 * Mon Oct 28 2019 Ankur Sinha - 2.6.2-1 - Update to 2.6.2 * Mon Sep 23 2019 Aniket Pradhan - 2.6.1-1 - Update to 2.6.1 * Sat Aug 31 2019 Ankur Sinha - 2.5.0-2 - Disable failing test on f32 * Sat Aug 31 2019 Ankur Sinha - 2.5.0-1 - Update to 2.5.0 - Disable failing tests * Mon Aug 19 2019 Miro Hrončok - 2.3.1-3 - Rebuilt for Python 3.8 * Fri Jul 26 2019 Fedora Release Engineering - 2.3.1-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_31_Mass_Rebuild * Fri Jul 5 2019 Luis M. Segundo - 2.3.1-1 - Update to 2.3.1 * Mon May 27 2019 Ankur Sinha - 2.2.0-2 - Disable failing test for F29 - https://github.com/pauldmccarthy/fslpy/issues/4 - Update all branches to ensure update path is correct * Mon May 27 2019 Ankur Sinha - 2.2.0-1 - Update to 2.2.0 - Use dep generator - Update ignored test locations * Sun Apr 14 2019 Ankur Sinha - 2.1.0-1 - Update to 2.1.0 * Sun Apr 14 2019 Ankur Sinha - 2.0.1-2 - Add BR to build docs correctly * Wed Apr 10 2019 Ankur Sinha - 2.0.1-1 - Update to 2.0.1 * Sat Feb 02 2019 Fedora Release Engineering - 1.12.0-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_30_Mass_Rebuild * Thu Nov 08 2018 Ankur Sinha - 1.12.0-3 - Fix doc build on < F30 - Fix test by requiring higher nibabel * Thu Nov 08 2018 Ankur Sinha - 1.12.0-2 - Correct shebangs - Move Requires to the sub package * Thu Nov 01 2018 Ankur Sinha - 1.12.0-1 - Initial build