Warning: Permanently added '3.236.44.86' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/6683105-fedora-rawhide-x86_64 --chroot fedora-rawhide-x86_64 Version: 0.69 PID: 7834 Logging PID: 7835 Task: {'appstream': False, 'background': False, 'build_id': 6683105, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': '36e58e8584740f9aa6681c69793ebfb995c34263', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/thrnciar/python-requests-5b54aca4/ProDy', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'ProDy', 'package_version': '2.4.1-1', 'project_dirname': 'python-requests-5b54aca4', 'project_name': 'python-requests-5b54aca4', 'project_owner': 'thrnciar', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/thrnciar/python-requests-5b54aca4/fedora-rawhide-x86_64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}], 'sandbox': 'thrnciar/python-requests-5b54aca4--thrnciar', 'source_json': {}, 'source_type': None, 'submitter': 'thrnciar', 'tags': [], 'task_id': '6683105-fedora-rawhide-x86_64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/thrnciar/python-requests-5b54aca4/ProDy /var/lib/copr-rpmbuild/workspace/workdir-j3dmqnya/ProDy --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/thrnciar/python-requests-5b54aca4/ProDy', '/var/lib/copr-rpmbuild/workspace/workdir-j3dmqnya/ProDy', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-j3dmqnya/ProDy'... Running: git checkout 36e58e8584740f9aa6681c69793ebfb995c34263 -- cmd: ['git', 'checkout', '36e58e8584740f9aa6681c69793ebfb995c34263', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-j3dmqnya/ProDy rc: 0 stdout: stderr: Note: switching to '36e58e8584740f9aa6681c69793ebfb995c34263'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 36e58e8 automatic import of ProDy Running: copr-distgit-client sources cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-j3dmqnya/ProDy rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading ProDy-2.4.1.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o ProDy-2.4.1.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/thrnciar/python-requests-5b54aca4/ProDy/ProDy-2.4.1.tar.gz/md5/ed3fa7549c21d8c68ed832b970952fe4/ProDy-2.4.1.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated 100 25.9M 100 25.9M 0 0 10.2M 0 0:00:02 0:00:02 --:--:-- 10.2M INFO: Reading stdout from command: md5sum ProDy-2.4.1.tar.gz Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-j3dmqnya/ProDy/ProDy.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-j3dmqnya/ProDy --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1700744584.520255 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.2 starting (python version = 3.11.3, NVR = mock-5.2-1.fc38), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-j3dmqnya/ProDy/ProDy.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-j3dmqnya/ProDy --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1700744584.520255 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-j3dmqnya/ProDy/ProDy.spec) Config(fedora-rawhide-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 5.2 INFO: Mock Version: 5.2 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1700744584.520255/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using bootstrap image: registry.fedoraproject.org/fedora:rawhide INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide INFO: Copy content of container registry.fedoraproject.org/fedora:rawhide to /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1700744584.520255/root INFO: Checking that registry.fedoraproject.org/fedora:rawhide image matches host's architecture INFO: mounting registry.fedoraproject.org/fedora:rawhide with podman image mount INFO: image registry.fedoraproject.org/fedora:rawhide as /var/lib/containers/storage/overlay/2867afab974f7855400f2f3efe60e26946dde0e813e737eaca38ba651d113485/merged INFO: umounting image registry.fedoraproject.org/fedora:rawhide (/var/lib/containers/storage/overlay/2867afab974f7855400f2f3efe60e26946dde0e813e737eaca38ba651d113485/merged) with podman image umount INFO: Package manager dnf detected and used (fallback) INFO: Bootstrap image not marked ready Start(bootstrap): installing dnf tooling No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 137 kB/s | 4.3 kB 00:00 fedora 66 MB/s | 72 MB 00:01 Package python3-dnf-4.18.1-2.fc40.noarch is already installed. Dependencies resolved. ================================================================================ Package Arch Version Repository Size ================================================================================ Installing: python3-dnf-plugins-core noarch 4.4.3-1.fc40 fedora 317 k Installing dependencies: dbus-libs x86_64 1:1.14.10-1.fc40 fedora 155 k python3-dateutil noarch 1:2.8.2-11.fc40 fedora 356 k python3-dbus x86_64 1.3.2-4.fc39 fedora 157 k python3-distro noarch 1.8.0-6.fc39 fedora 49 k python3-six noarch 1.16.0-12.fc39 fedora 41 k python3-systemd x86_64 235-5.fc39 fedora 107 k Transaction Summary ================================================================================ Install 7 Packages Total download size: 1.2 M Installed size: 3.6 M Downloading Packages: (1/7): python3-dateutil-2.8.2-11.fc40.noarch.rp 18 MB/s | 356 kB 00:00 (2/7): python3-dbus-1.3.2-4.fc39.x86_64.rpm 7.5 MB/s | 157 kB 00:00 (3/7): dbus-libs-1.14.10-1.fc40.x86_64.rpm 7.2 MB/s | 155 kB 00:00 (4/7): python3-distro-1.8.0-6.fc39.noarch.rpm 23 MB/s | 49 kB 00:00 (5/7): python3-dnf-plugins-core-4.4.3-1.fc40.no 81 MB/s | 317 kB 00:00 (6/7): python3-six-1.16.0-12.fc39.noarch.rpm 11 MB/s | 41 kB 00:00 (7/7): python3-systemd-235-5.fc39.x86_64.rpm 41 MB/s | 107 kB 00:00 -------------------------------------------------------------------------------- Total 5.3 MB/s | 1.2 MB 00:00 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Installing : python3-systemd-235-5.fc39.x86_64 1/7 Installing : python3-six-1.16.0-12.fc39.noarch 2/7 Installing : python3-dateutil-1:2.8.2-11.fc40.noarch 3/7 Installing : python3-distro-1.8.0-6.fc39.noarch 4/7 Installing : dbus-libs-1:1.14.10-1.fc40.x86_64 5/7 Installing : python3-dbus-1.3.2-4.fc39.x86_64 6/7 Installing : python3-dnf-plugins-core-4.4.3-1.fc40.noarch 7/7 Running scriptlet: python3-dnf-plugins-core-4.4.3-1.fc40.noarch 7/7 Installed: dbus-libs-1:1.14.10-1.fc40.x86_64 python3-dateutil-1:2.8.2-11.fc40.noarch python3-dbus-1.3.2-4.fc39.x86_64 python3-distro-1.8.0-6.fc39.noarch python3-dnf-plugins-core-4.4.3-1.fc40.noarch python3-six-1.16.0-12.fc39.noarch python3-systemd-235-5.fc39.x86_64 Complete! Finish(bootstrap): installing dnf tooling Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1700744584.520255/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf detected and used (direct choice) Start: installing minimal buildroot with dnf No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 125 kB/s | 4.3 kB 00:00 fedora 54 MB/s | 72 MB 00:01 Dependencies resolved. ================================================================================ Package Arch Version Repo Size ================================================================================ Installing group/module packages: bash x86_64 5.2.21-2.fc40 fedora 1.8 M bzip2 x86_64 1.0.8-16.fc39 fedora 52 k coreutils x86_64 9.4-1.fc40 fedora 1.1 M cpio x86_64 2.14-5.fc40 fedora 280 k diffutils x86_64 3.10-3.fc39 fedora 398 k fedora-release-common noarch 40-0.20 fedora 20 k findutils x86_64 1:4.9.0-6.fc40 fedora 492 k gawk x86_64 5.2.2-2.fc39 fedora 1.1 M glibc-minimal-langpack x86_64 2.38.9000-22.fc40 fedora 81 k grep x86_64 3.11-5.fc40 fedora 298 k gzip x86_64 1.12-6.fc39 fedora 166 k info x86_64 7.1-1.fc40 fedora 184 k patch x86_64 2.7.6-22.fc39 fedora 125 k redhat-rpm-config noarch 271-1.fc40 fedora 81 k rpm-build x86_64 4.19.0-2.fc40 fedora 79 k sed x86_64 4.8-14.fc39 fedora 306 k shadow-utils x86_64 2:4.14.0-2.fc40 fedora 1.3 M tar x86_64 2:1.35-2.fc40 fedora 864 k unzip x86_64 6.0-62.fc39 fedora 184 k util-linux x86_64 2.39.2-1.fc40 fedora 1.2 M which x86_64 2.21-40.fc39 fedora 42 k xz x86_64 5.4.5-1.fc40 fedora 557 k Installing dependencies: alternatives x86_64 1.25-1.fc39 fedora 39 k ansible-srpm-macros noarch 1-11.fc39 fedora 21 k audit-libs x86_64 3.1.2-5.fc40 fedora 117 k authselect x86_64 1.4.3-1.fc40 fedora 149 k authselect-libs x86_64 1.4.3-1.fc40 fedora 249 k basesystem noarch 11-18.fc39 fedora 7.2 k binutils x86_64 2.41-14.fc40 fedora 6.3 M binutils-gold x86_64 2.41-14.fc40 fedora 797 k bzip2-libs x86_64 1.0.8-16.fc39 fedora 41 k ca-certificates noarch 2023.2.62_v7.0.401-4.fc40 fedora 863 k coreutils-common x86_64 9.4-1.fc40 fedora 2.1 M cracklib x86_64 2.9.11-2.fc39 fedora 94 k crypto-policies noarch 20231113-1.gitb402e82.fc40 fedora 99 k curl x86_64 8.4.0-1.fc40 fedora 362 k cyrus-sasl-lib x86_64 2.1.28-11.fc39 fedora 793 k debugedit x86_64 5.0-11.fc40 fedora 77 k dwz x86_64 0.15-3.fc39 fedora 134 k ed x86_64 1.19-4.fc39 fedora 79 k efi-srpm-macros noarch 5-9.fc39 fedora 22 k elfutils x86_64 0.190-2.fc40 fedora 551 k elfutils-debuginfod-client x86_64 0.190-2.fc40 fedora 39 k elfutils-default-yama-scope noarch 0.190-2.fc40 fedora 14 k elfutils-libelf x86_64 0.190-2.fc40 fedora 195 k elfutils-libs x86_64 0.190-2.fc40 fedora 260 k fedora-gpg-keys noarch 40-0.2 fedora 130 k fedora-release noarch 40-0.20 fedora 9.3 k fedora-release-identity-basic noarch 40-0.20 fedora 10 k fedora-repos noarch 40-0.2 fedora 9.3 k fedora-repos-rawhide noarch 40-0.2 fedora 8.9 k file x86_64 5.45-1.fc40 fedora 49 k file-libs x86_64 5.45-1.fc40 fedora 763 k filesystem x86_64 3.18-6.fc39 fedora 1.1 M fonts-srpm-macros noarch 1:2.0.5-12.fc39 fedora 26 k forge-srpm-macros noarch 0.1.0-1.fc40 fedora 18 k fpc-srpm-macros noarch 1.3-8.fc39 fedora 7.4 k gdb-minimal x86_64 13.2-11.fc40 fedora 4.2 M gdbm x86_64 1:1.23-4.fc39 fedora 155 k gdbm-libs x86_64 1:1.23-4.fc39 fedora 56 k ghc-srpm-macros noarch 1.6.1-3.fc40 fedora 8.1 k glibc x86_64 2.38.9000-22.fc40 fedora 2.2 M glibc-common x86_64 2.38.9000-22.fc40 fedora 363 k glibc-gconv-extra x86_64 2.38.9000-22.fc40 fedora 1.7 M gmp x86_64 1:6.2.1-5.fc39 fedora 313 k gnat-srpm-macros noarch 6-3.fc39 fedora 8.8 k go-srpm-macros noarch 3.3.1-1.fc40 fedora 28 k jansson x86_64 2.13.1-7.fc39 fedora 44 k kernel-srpm-macros noarch 1.0-20.fc39 fedora 10 k keyutils-libs x86_64 1.6.1-7.fc39 fedora 31 k krb5-libs x86_64 1.21.2-2.fc40 fedora 765 k libacl x86_64 2.3.1-10.fc40 fedora 23 k libarchive x86_64 3.7.2-1.fc40 fedora 408 k libattr x86_64 2.5.1-9.fc40 fedora 18 k libblkid x86_64 2.39.2-1.fc40 fedora 116 k libbrotli x86_64 1.1.0-1.fc40 fedora 336 k libcap x86_64 2.69-1.fc40 fedora 83 k libcap-ng x86_64 0.8.3-8.fc40 fedora 32 k libcom_err x86_64 1.47.0-2.fc39 fedora 26 k libcurl x86_64 8.4.0-1.fc40 fedora 343 k libeconf x86_64 0.5.2-1.fc40 fedora 30 k libevent x86_64 2.1.12-9.fc39 fedora 258 k libfdisk x86_64 2.39.2-1.fc40 fedora 162 k libffi x86_64 3.4.4-4.fc39 fedora 40 k libgcc x86_64 13.2.1-5.fc40 fedora 112 k libgomp x86_64 13.2.1-5.fc40 fedora 321 k libidn2 x86_64 2.3.4-3.fc39 fedora 117 k libmount x86_64 2.39.2-1.fc40 fedora 154 k libnghttp2 x86_64 1.58.0-1.fc40 fedora 76 k libnsl2 x86_64 2.0.0-6.fc39 fedora 30 k libpkgconf x86_64 1.9.5-2.fc39 fedora 38 k libpsl x86_64 0.21.2-4.fc39 fedora 63 k libpwquality x86_64 1.4.5-6.fc39 fedora 120 k libselinux x86_64 3.6-0.rc1.1.fc40 fedora 87 k libsemanage x86_64 3.6-0.rc1.1.fc40 fedora 116 k libsepol x86_64 3.6-0.rc1.1.fc40 fedora 340 k libsigsegv x86_64 2.14-5.fc39 fedora 27 k libsmartcols x86_64 2.39.2-1.fc40 fedora 67 k libssh x86_64 0.10.5-2.fc39 fedora 211 k libssh-config noarch 0.10.5-2.fc39 fedora 9.2 k libstdc++ x86_64 13.2.1-5.fc40 fedora 864 k libtasn1 x86_64 4.19.0-3.fc39 fedora 74 k libtirpc x86_64 1.3.4-0.fc40 fedora 94 k libunistring x86_64 1.1-5.fc40 fedora 543 k libutempter x86_64 1.2.1-10.fc39 fedora 26 k libuuid x86_64 2.39.2-1.fc40 fedora 28 k libverto x86_64 0.3.2-6.fc39 fedora 20 k libxcrypt x86_64 4.4.36-2.fc39 fedora 119 k libxml2 x86_64 2.12.0-1.fc40 fedora 698 k libzstd x86_64 1.5.5-4.fc39 fedora 309 k lua-libs x86_64 5.4.6-3.fc39 fedora 133 k lua-srpm-macros noarch 1-9.fc39 fedora 8.6 k lz4-libs x86_64 1.9.4-4.fc39 fedora 67 k mpfr x86_64 4.2.1-1.fc40 fedora 343 k ncurses-base noarch 6.4-8.20231001.fc40 fedora 88 k ncurses-libs x86_64 6.4-8.20231001.fc40 fedora 338 k ocaml-srpm-macros noarch 9-1.fc40 fedora 9.0 k openblas-srpm-macros noarch 2-14.fc39 fedora 7.5 k openldap x86_64 2.6.6-1.fc39 fedora 255 k openssl-libs x86_64 1:3.1.4-1.fc40 fedora 2.2 M p11-kit x86_64 0.25.3-1.fc40 fedora 522 k p11-kit-trust x86_64 0.25.3-1.fc40 fedora 142 k package-notes-srpm-macros noarch 0.5-9.fc39 fedora 11 k pam x86_64 1.5.3-8.fc40 fedora 547 k pam-libs x86_64 1.5.3-8.fc40 fedora 57 k pcre2 x86_64 10.42-2.fc40 fedora 233 k pcre2-syntax noarch 10.42-2.fc40 fedora 143 k perl-srpm-macros noarch 1-51.fc39 fedora 8.0 k pkgconf x86_64 1.9.5-2.fc39 fedora 42 k pkgconf-m4 noarch 1.9.5-2.fc39 fedora 14 k pkgconf-pkg-config x86_64 1.9.5-2.fc39 fedora 9.6 k popt x86_64 1.19-3.fc39 fedora 66 k publicsuffix-list-dafsa noarch 20230812-1.fc40 fedora 57 k pyproject-srpm-macros noarch 1.10.0-1.fc40 fedora 14 k python-srpm-macros noarch 3.12-4.fc40 fedora 25 k qt5-srpm-macros noarch 5.15.11-1.fc40 fedora 8.3 k qt6-srpm-macros noarch 6.6.0-1.fc40 fedora 8.7 k readline x86_64 8.2-4.fc39 fedora 213 k rpm x86_64 4.19.0-2.fc40 fedora 538 k rpm-build-libs x86_64 4.19.0-2.fc40 fedora 96 k rpm-libs x86_64 4.19.0-2.fc40 fedora 312 k rpm-sequoia x86_64 1.5.0-1.fc40 fedora 883 k rust-srpm-macros noarch 25.2-2.fc40 fedora 13 k setup noarch 2.14.4-1.fc39 fedora 154 k sqlite-libs x86_64 3.44.0-1.fc40 fedora 692 k systemd-libs x86_64 255~rc3-1.fc40 fedora 702 k util-linux-core x86_64 2.39.2-1.fc40 fedora 493 k xxhash-libs x86_64 0.8.2-1.fc39 fedora 37 k xz-libs x86_64 5.4.5-1.fc40 fedora 108 k zip x86_64 3.0-39.fc40 fedora 266 k zlib x86_64 1.2.13-5.fc40 fedora 94 k zstd x86_64 1.5.5-4.fc39 fedora 482 k Installing Groups: Buildsystem building group Transaction Summary ================================================================================ Install 152 Packages Total download size: 52 M Installed size: 180 M Downloading Packages: (1/152): alternatives-1.25-1.fc39.x86_64.rpm 3.2 MB/s | 39 kB 00:00 (2/152): ansible-srpm-macros-1-11.fc39.noarch.r 1.5 MB/s | 21 kB 00:00 (3/152): authselect-1.4.3-1.fc40.x86_64.rpm 47 MB/s | 149 kB 00:00 (4/152): audit-libs-3.1.2-5.fc40.x86_64.rpm 6.5 MB/s | 117 kB 00:00 (5/152): authselect-libs-1.4.3-1.fc40.x86_64.rp 59 MB/s | 249 kB 00:00 (6/152): basesystem-11-18.fc39.noarch.rpm 2.3 MB/s | 7.2 kB 00:00 (7/152): binutils-gold-2.41-14.fc40.x86_64.rpm 204 MB/s | 797 kB 00:00 (8/152): bzip2-1.0.8-16.fc39.x86_64.rpm 13 MB/s | 52 kB 00:00 (9/152): bash-5.2.21-2.fc40.x86_64.rpm 128 MB/s | 1.8 MB 00:00 (10/152): bzip2-libs-1.0.8-16.fc39.x86_64.rpm 5.9 MB/s | 41 kB 00:00 (11/152): ca-certificates-2023.2.62_v7.0.401-4. 95 MB/s | 863 kB 00:00 (12/152): coreutils-9.4-1.fc40.x86_64.rpm 95 MB/s | 1.1 MB 00:00 (13/152): binutils-2.41-14.fc40.x86_64.rpm 172 MB/s | 6.3 MB 00:00 (14/152): coreutils-common-9.4-1.fc40.x86_64.rp 144 MB/s | 2.1 MB 00:00 (15/152): cpio-2.14-5.fc40.x86_64.rpm 23 MB/s | 280 kB 00:00 (16/152): cracklib-2.9.11-2.fc39.x86_64.rpm 31 MB/s | 94 kB 00:00 (17/152): crypto-policies-20231113-1.gitb402e82 31 MB/s | 99 kB 00:00 (18/152): curl-8.4.0-1.fc40.x86_64.rpm 82 MB/s | 362 kB 00:00 (19/152): cyrus-sasl-lib-2.1.28-11.fc39.x86_64. 137 MB/s | 793 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(152/152): zstd-1.5.5-4.fc39.x86_64.rpm 95 MB/s | 482 kB 00:00 -------------------------------------------------------------------------------- Total 147 MB/s | 52 MB 00:00 fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0xA15B79CC: Userid : "Fedora (40) " Fingerprint: 115D F9AE F857 853E E844 5D0A 0727 707E A15B 79CC From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-40-primary Key imported successfully fedora 1.6 MB/s | 1.6 kB 00:00 GPG key at file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-40-primary (0xA15B79CC) is already installed fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0x18B8E74C: Userid : "Fedora (39) " Fingerprint: E8F2 3996 F232 1864 0CB4 4CBE 75CF 5AC4 18B8 E74C From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-39-primary Key imported successfully Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.18-6.fc39.x86_64 1/1 Preparing : 1/1 Installing : libgcc-13.2.1-5.fc40.x86_64 1/152 Running scriptlet: libgcc-13.2.1-5.fc40.x86_64 1/152 Installing : crypto-policies-20231113-1.gitb402e82.fc40.noarc 2/152 Running scriptlet: crypto-policies-20231113-1.gitb402e82.fc40.noarc 2/152 Installing : fedora-release-identity-basic-40-0.20.noarch 3/152 Installing : fedora-repos-rawhide-40-0.2.noarch 4/152 Installing : fedora-gpg-keys-40-0.2.noarch 5/152 Installing : fedora-repos-40-0.2.noarch 6/152 Installing : fedora-release-common-40-0.20.noarch 7/152 Installing : fedora-release-40-0.20.noarch 8/152 Installing : setup-2.14.4-1.fc39.noarch 9/152 warning: /etc/hosts created as /etc/hosts.rpmnew Running scriptlet: setup-2.14.4-1.fc39.noarch 9/152 Installing : filesystem-3.18-6.fc39.x86_64 10/152 Installing : basesystem-11-18.fc39.noarch 11/152 Installing : rust-srpm-macros-25.2-2.fc40.noarch 12/152 Installing : qt6-srpm-macros-6.6.0-1.fc40.noarch 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mpfr-4.2.1-1.fc40.x86_64 46/152 Installing : dwz-0.15-3.fc39.x86_64 47/152 Installing : unzip-6.0-62.fc39.x86_64 48/152 Installing : file-libs-5.45-1.fc40.x86_64 49/152 Installing : file-5.45-1.fc40.x86_64 50/152 Installing : alternatives-1.25-1.fc39.x86_64 51/152 Installing : jansson-2.13.1-7.fc39.x86_64 52/152 Installing : libcap-ng-0.8.3-8.fc40.x86_64 53/152 Installing : audit-libs-3.1.2-5.fc40.x86_64 54/152 Installing : pam-libs-1.5.3-8.fc40.x86_64 55/152 Installing : libcap-2.69-1.fc40.x86_64 56/152 Installing : systemd-libs-255~rc3-1.fc40.x86_64 57/152 Installing : libcom_err-1.47.0-2.fc39.x86_64 58/152 Installing : libsepol-3.6-0.rc1.1.fc40.x86_64 59/152 Installing : libsmartcols-2.39.2-1.fc40.x86_64 60/152 Installing : libtasn1-4.19.0-3.fc39.x86_64 61/152 Installing : libunistring-1.1-5.fc40.x86_64 62/152 Installing : libidn2-2.3.4-3.fc39.x86_64 63/152 Installing : lua-libs-5.4.6-3.fc39.x86_64 64/152 Installing : pcre2-10.42-2.fc40.x86_64 65/152 Installing : libselinux-3.6-0.rc1.1.fc40.x86_64 66/152 Installing : sed-4.8-14.fc39.x86_64 67/152 Installing : grep-3.11-5.fc40.x86_64 68/152 Installing : findutils-1:4.9.0-6.fc40.x86_64 69/152 Installing : xz-5.4.5-1.fc40.x86_64 70/152 Installing : libmount-2.39.2-1.fc40.x86_64 71/152 Installing : util-linux-core-2.39.2-1.fc40.x86_64 72/152 Installing : libsemanage-3.6-0.rc1.1.fc40.x86_64 73/152 Installing : shadow-utils-2:4.14.0-2.fc40.x86_64 74/152 Running scriptlet: libutempter-1.2.1-10.fc39.x86_64 75/152 Installing : libutempter-1.2.1-10.fc39.x86_64 75/152 Installing : tar-2:1.35-2.fc40.x86_64 76/152 Installing : libpsl-0.21.2-4.fc39.x86_64 77/152 Installing : zip-3.0-39.fc40.x86_64 78/152 Installing : zstd-1.5.5-4.fc39.x86_64 79/152 Installing : cyrus-sasl-lib-2.1.28-11.fc39.x86_64 80/152 Installing : gdbm-1:1.23-4.fc39.x86_64 81/152 Installing : libfdisk-2.39.2-1.fc40.x86_64 82/152 Installing : bzip2-1.0.8-16.fc39.x86_64 83/152 Installing : libxml2-2.12.0-1.fc40.x86_64 84/152 Installing : sqlite-libs-3.44.0-1.fc40.x86_64 85/152 Installing : ed-1.19-4.fc39.x86_64 86/152 Installing : patch-2.7.6-22.fc39.x86_64 87/152 Installing : elfutils-default-yama-scope-0.190-2.fc40.noarch 88/152 Running scriptlet: elfutils-default-yama-scope-0.190-2.fc40.noarch 88/152 Installing : cpio-2.14-5.fc40.x86_64 89/152 Installing : diffutils-3.10-3.fc39.x86_64 90/152 Installing : keyutils-libs-1.6.1-7.fc39.x86_64 91/152 Installing : libbrotli-1.1.0-1.fc40.x86_64 92/152 Installing : libffi-3.4.4-4.fc39.x86_64 93/152 Installing : p11-kit-0.25.3-1.fc40.x86_64 94/152 Installing : p11-kit-trust-0.25.3-1.fc40.x86_64 95/152 Running scriptlet: p11-kit-trust-0.25.3-1.fc40.x86_64 95/152 Installing : libgomp-13.2.1-5.fc40.x86_64 96/152 Installing : libnghttp2-1.58.0-1.fc40.x86_64 97/152 Installing : libpkgconf-1.9.5-2.fc39.x86_64 98/152 Installing : pkgconf-1.9.5-2.fc39.x86_64 99/152 Installing : pkgconf-pkg-config-1.9.5-2.fc39.x86_64 100/152 Installing : libsigsegv-2.14-5.fc39.x86_64 101/152 Installing : gawk-5.2.2-2.fc39.x86_64 102/152 Installing : libverto-0.3.2-6.fc39.x86_64 103/152 Installing : xxhash-libs-0.8.2-1.fc39.x86_64 104/152 Installing : libssh-config-0.10.5-2.fc39.noarch 105/152 Installing : kernel-srpm-macros-1.0-20.fc39.noarch 106/152 Installing : gnat-srpm-macros-6-3.fc39.noarch 107/152 Installing : ghc-srpm-macros-1.6.1-3.fc40.noarch 108/152 Installing : fpc-srpm-macros-1.3-8.fc39.noarch 109/152 Installing : coreutils-common-9.4-1.fc40.x86_64 110/152 Installing : openssl-libs-1:3.1.4-1.fc40.x86_64 111/152 Installing : coreutils-9.4-1.fc40.x86_64 112/152 Running scriptlet: ca-certificates-2023.2.62_v7.0.401-4.fc40.noarch 113/152 Installing : ca-certificates-2023.2.62_v7.0.401-4.fc40.noarch 113/152 Running scriptlet: ca-certificates-2023.2.62_v7.0.401-4.fc40.noarch 113/152 Installing : krb5-libs-1.21.2-2.fc40.x86_64 114/152 Installing : libtirpc-1.3.4-0.fc40.x86_64 115/152 Running scriptlet: authselect-libs-1.4.3-1.fc40.x86_64 116/152 Installing : authselect-libs-1.4.3-1.fc40.x86_64 116/152 Installing : gzip-1.12-6.fc39.x86_64 117/152 Installing : cracklib-2.9.11-2.fc39.x86_64 118/152 Installing : libpwquality-1.4.5-6.fc39.x86_64 119/152 Installing : authselect-1.4.3-1.fc40.x86_64 120/152 Installing : libnsl2-2.0.0-6.fc39.x86_64 121/152 Installing : pam-1.5.3-8.fc40.x86_64 122/152 Installing : libssh-0.10.5-2.fc39.x86_64 123/152 Installing : libarchive-3.7.2-1.fc40.x86_64 124/152 Installing : libevent-2.1.12-9.fc39.x86_64 125/152 Installing : openldap-2.6.6-1.fc39.x86_64 126/152 Installing : libcurl-8.4.0-1.fc40.x86_64 127/152 Installing : elfutils-libs-0.190-2.fc40.x86_64 128/152 Installing : elfutils-debuginfod-client-0.190-2.fc40.x86_64 129/152 Installing : binutils-gold-2.41-14.fc40.x86_64 130/152 Running scriptlet: binutils-gold-2.41-14.fc40.x86_64 130/152 Installing : binutils-2.41-14.fc40.x86_64 131/152 Running scriptlet: binutils-2.41-14.fc40.x86_64 131/152 Installing : elfutils-0.190-2.fc40.x86_64 132/152 Installing : gdb-minimal-13.2-11.fc40.x86_64 133/152 Installing : debugedit-5.0-11.fc40.x86_64 134/152 Installing : curl-8.4.0-1.fc40.x86_64 135/152 Installing : rpm-sequoia-1.5.0-1.fc40.x86_64 136/152 Installing : rpm-libs-4.19.0-2.fc40.x86_64 137/152 Running scriptlet: rpm-4.19.0-2.fc40.x86_64 138/152 Installing : rpm-4.19.0-2.fc40.x86_64 138/152 Installing : efi-srpm-macros-5-9.fc39.noarch 139/152 Installing : lua-srpm-macros-1-9.fc39.noarch 140/152 Installing : rpm-build-libs-4.19.0-2.fc40.x86_64 141/152 Installing : ansible-srpm-macros-1-11.fc39.noarch 142/152 Installing : fonts-srpm-macros-1:2.0.5-12.fc39.noarch 143/152 Installing : forge-srpm-macros-0.1.0-1.fc40.noarch 144/152 Installing : go-srpm-macros-3.3.1-1.fc40.noarch 145/152 Installing : python-srpm-macros-3.12-4.fc40.noarch 146/152 Installing : redhat-rpm-config-271-1.fc40.noarch 147/152 Installing : rpm-build-4.19.0-2.fc40.x86_64 148/152 Installing : pyproject-srpm-macros-1.10.0-1.fc40.noarch 149/152 Installing : util-linux-2.39.2-1.fc40.x86_64 150/152 Installing : which-2.21-40.fc39.x86_64 151/152 Installing : info-7.1-1.fc40.x86_64 152/152 Running scriptlet: filesystem-3.18-6.fc39.x86_64 152/152 Running scriptlet: ca-certificates-2023.2.62_v7.0.401-4.fc40.noarch 152/152 Running scriptlet: authselect-libs-1.4.3-1.fc40.x86_64 152/152 Running scriptlet: rpm-4.19.0-2.fc40.x86_64 152/152 Running scriptlet: info-7.1-1.fc40.x86_64 152/152 Installed: alternatives-1.25-1.fc39.x86_64 ansible-srpm-macros-1-11.fc39.noarch audit-libs-3.1.2-5.fc40.x86_64 authselect-1.4.3-1.fc40.x86_64 authselect-libs-1.4.3-1.fc40.x86_64 basesystem-11-18.fc39.noarch bash-5.2.21-2.fc40.x86_64 binutils-2.41-14.fc40.x86_64 binutils-gold-2.41-14.fc40.x86_64 bzip2-1.0.8-16.fc39.x86_64 bzip2-libs-1.0.8-16.fc39.x86_64 ca-certificates-2023.2.62_v7.0.401-4.fc40.noarch coreutils-9.4-1.fc40.x86_64 coreutils-common-9.4-1.fc40.x86_64 cpio-2.14-5.fc40.x86_64 cracklib-2.9.11-2.fc39.x86_64 crypto-policies-20231113-1.gitb402e82.fc40.noarch curl-8.4.0-1.fc40.x86_64 cyrus-sasl-lib-2.1.28-11.fc39.x86_64 debugedit-5.0-11.fc40.x86_64 diffutils-3.10-3.fc39.x86_64 dwz-0.15-3.fc39.x86_64 ed-1.19-4.fc39.x86_64 efi-srpm-macros-5-9.fc39.noarch elfutils-0.190-2.fc40.x86_64 elfutils-debuginfod-client-0.190-2.fc40.x86_64 elfutils-default-yama-scope-0.190-2.fc40.noarch elfutils-libelf-0.190-2.fc40.x86_64 elfutils-libs-0.190-2.fc40.x86_64 fedora-gpg-keys-40-0.2.noarch fedora-release-40-0.20.noarch fedora-release-common-40-0.20.noarch fedora-release-identity-basic-40-0.20.noarch fedora-repos-40-0.2.noarch fedora-repos-rawhide-40-0.2.noarch file-5.45-1.fc40.x86_64 file-libs-5.45-1.fc40.x86_64 filesystem-3.18-6.fc39.x86_64 findutils-1:4.9.0-6.fc40.x86_64 fonts-srpm-macros-1:2.0.5-12.fc39.noarch forge-srpm-macros-0.1.0-1.fc40.noarch fpc-srpm-macros-1.3-8.fc39.noarch gawk-5.2.2-2.fc39.x86_64 gdb-minimal-13.2-11.fc40.x86_64 gdbm-1:1.23-4.fc39.x86_64 gdbm-libs-1:1.23-4.fc39.x86_64 ghc-srpm-macros-1.6.1-3.fc40.noarch glibc-2.38.9000-22.fc40.x86_64 glibc-common-2.38.9000-22.fc40.x86_64 glibc-gconv-extra-2.38.9000-22.fc40.x86_64 glibc-minimal-langpack-2.38.9000-22.fc40.x86_64 gmp-1:6.2.1-5.fc39.x86_64 gnat-srpm-macros-6-3.fc39.noarch go-srpm-macros-3.3.1-1.fc40.noarch grep-3.11-5.fc40.x86_64 gzip-1.12-6.fc39.x86_64 info-7.1-1.fc40.x86_64 jansson-2.13.1-7.fc39.x86_64 kernel-srpm-macros-1.0-20.fc39.noarch keyutils-libs-1.6.1-7.fc39.x86_64 krb5-libs-1.21.2-2.fc40.x86_64 libacl-2.3.1-10.fc40.x86_64 libarchive-3.7.2-1.fc40.x86_64 libattr-2.5.1-9.fc40.x86_64 libblkid-2.39.2-1.fc40.x86_64 libbrotli-1.1.0-1.fc40.x86_64 libcap-2.69-1.fc40.x86_64 libcap-ng-0.8.3-8.fc40.x86_64 libcom_err-1.47.0-2.fc39.x86_64 libcurl-8.4.0-1.fc40.x86_64 libeconf-0.5.2-1.fc40.x86_64 libevent-2.1.12-9.fc39.x86_64 libfdisk-2.39.2-1.fc40.x86_64 libffi-3.4.4-4.fc39.x86_64 libgcc-13.2.1-5.fc40.x86_64 libgomp-13.2.1-5.fc40.x86_64 libidn2-2.3.4-3.fc39.x86_64 libmount-2.39.2-1.fc40.x86_64 libnghttp2-1.58.0-1.fc40.x86_64 libnsl2-2.0.0-6.fc39.x86_64 libpkgconf-1.9.5-2.fc39.x86_64 libpsl-0.21.2-4.fc39.x86_64 libpwquality-1.4.5-6.fc39.x86_64 libselinux-3.6-0.rc1.1.fc40.x86_64 libsemanage-3.6-0.rc1.1.fc40.x86_64 libsepol-3.6-0.rc1.1.fc40.x86_64 libsigsegv-2.14-5.fc39.x86_64 libsmartcols-2.39.2-1.fc40.x86_64 libssh-0.10.5-2.fc39.x86_64 libssh-config-0.10.5-2.fc39.noarch libstdc++-13.2.1-5.fc40.x86_64 libtasn1-4.19.0-3.fc39.x86_64 libtirpc-1.3.4-0.fc40.x86_64 libunistring-1.1-5.fc40.x86_64 libutempter-1.2.1-10.fc39.x86_64 libuuid-2.39.2-1.fc40.x86_64 libverto-0.3.2-6.fc39.x86_64 libxcrypt-4.4.36-2.fc39.x86_64 libxml2-2.12.0-1.fc40.x86_64 libzstd-1.5.5-4.fc39.x86_64 lua-libs-5.4.6-3.fc39.x86_64 lua-srpm-macros-1-9.fc39.noarch lz4-libs-1.9.4-4.fc39.x86_64 mpfr-4.2.1-1.fc40.x86_64 ncurses-base-6.4-8.20231001.fc40.noarch ncurses-libs-6.4-8.20231001.fc40.x86_64 ocaml-srpm-macros-9-1.fc40.noarch openblas-srpm-macros-2-14.fc39.noarch openldap-2.6.6-1.fc39.x86_64 openssl-libs-1:3.1.4-1.fc40.x86_64 p11-kit-0.25.3-1.fc40.x86_64 p11-kit-trust-0.25.3-1.fc40.x86_64 package-notes-srpm-macros-0.5-9.fc39.noarch pam-1.5.3-8.fc40.x86_64 pam-libs-1.5.3-8.fc40.x86_64 patch-2.7.6-22.fc39.x86_64 pcre2-10.42-2.fc40.x86_64 pcre2-syntax-10.42-2.fc40.noarch perl-srpm-macros-1-51.fc39.noarch pkgconf-1.9.5-2.fc39.x86_64 pkgconf-m4-1.9.5-2.fc39.noarch pkgconf-pkg-config-1.9.5-2.fc39.x86_64 popt-1.19-3.fc39.x86_64 publicsuffix-list-dafsa-20230812-1.fc40.noarch pyproject-srpm-macros-1.10.0-1.fc40.noarch python-srpm-macros-3.12-4.fc40.noarch qt5-srpm-macros-5.15.11-1.fc40.noarch qt6-srpm-macros-6.6.0-1.fc40.noarch readline-8.2-4.fc39.x86_64 redhat-rpm-config-271-1.fc40.noarch rpm-4.19.0-2.fc40.x86_64 rpm-build-4.19.0-2.fc40.x86_64 rpm-build-libs-4.19.0-2.fc40.x86_64 rpm-libs-4.19.0-2.fc40.x86_64 rpm-sequoia-1.5.0-1.fc40.x86_64 rust-srpm-macros-25.2-2.fc40.noarch sed-4.8-14.fc39.x86_64 setup-2.14.4-1.fc39.noarch shadow-utils-2:4.14.0-2.fc40.x86_64 sqlite-libs-3.44.0-1.fc40.x86_64 systemd-libs-255~rc3-1.fc40.x86_64 tar-2:1.35-2.fc40.x86_64 unzip-6.0-62.fc39.x86_64 util-linux-2.39.2-1.fc40.x86_64 util-linux-core-2.39.2-1.fc40.x86_64 which-2.21-40.fc39.x86_64 xxhash-libs-0.8.2-1.fc39.x86_64 xz-5.4.5-1.fc40.x86_64 xz-libs-5.4.5-1.fc40.x86_64 zip-3.0-39.fc40.x86_64 zlib-1.2.13-5.fc40.x86_64 zstd-1.5.5-4.fc39.x86_64 Complete! Finish: installing minimal buildroot with dnf Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: alternatives-1.25-1.fc39.x86_64 ansible-srpm-macros-1-11.fc39.noarch audit-libs-3.1.2-5.fc40.x86_64 authselect-1.4.3-1.fc40.x86_64 authselect-libs-1.4.3-1.fc40.x86_64 basesystem-11-18.fc39.noarch bash-5.2.21-2.fc40.x86_64 binutils-2.41-14.fc40.x86_64 binutils-gold-2.41-14.fc40.x86_64 bzip2-1.0.8-16.fc39.x86_64 bzip2-libs-1.0.8-16.fc39.x86_64 ca-certificates-2023.2.62_v7.0.401-4.fc40.noarch coreutils-9.4-1.fc40.x86_64 coreutils-common-9.4-1.fc40.x86_64 cpio-2.14-5.fc40.x86_64 cracklib-2.9.11-2.fc39.x86_64 crypto-policies-20231113-1.gitb402e82.fc40.noarch curl-8.4.0-1.fc40.x86_64 cyrus-sasl-lib-2.1.28-11.fc39.x86_64 debugedit-5.0-11.fc40.x86_64 diffutils-3.10-3.fc39.x86_64 dwz-0.15-3.fc39.x86_64 ed-1.19-4.fc39.x86_64 efi-srpm-macros-5-9.fc39.noarch elfutils-0.190-2.fc40.x86_64 elfutils-debuginfod-client-0.190-2.fc40.x86_64 elfutils-default-yama-scope-0.190-2.fc40.noarch elfutils-libelf-0.190-2.fc40.x86_64 elfutils-libs-0.190-2.fc40.x86_64 fedora-gpg-keys-40-0.2.noarch fedora-release-40-0.20.noarch fedora-release-common-40-0.20.noarch fedora-release-identity-basic-40-0.20.noarch fedora-repos-40-0.2.noarch fedora-repos-rawhide-40-0.2.noarch file-5.45-1.fc40.x86_64 file-libs-5.45-1.fc40.x86_64 filesystem-3.18-6.fc39.x86_64 findutils-4.9.0-6.fc40.x86_64 fonts-srpm-macros-2.0.5-12.fc39.noarch forge-srpm-macros-0.1.0-1.fc40.noarch fpc-srpm-macros-1.3-8.fc39.noarch gawk-5.2.2-2.fc39.x86_64 gdb-minimal-13.2-11.fc40.x86_64 gdbm-1.23-4.fc39.x86_64 gdbm-libs-1.23-4.fc39.x86_64 ghc-srpm-macros-1.6.1-3.fc40.noarch glibc-2.38.9000-22.fc40.x86_64 glibc-common-2.38.9000-22.fc40.x86_64 glibc-gconv-extra-2.38.9000-22.fc40.x86_64 glibc-minimal-langpack-2.38.9000-22.fc40.x86_64 gmp-6.2.1-5.fc39.x86_64 gnat-srpm-macros-6-3.fc39.noarch go-srpm-macros-3.3.1-1.fc40.noarch gpg-pubkey-18b8e74c-62f2920f gpg-pubkey-a15b79cc-63d04c2c grep-3.11-5.fc40.x86_64 gzip-1.12-6.fc39.x86_64 info-7.1-1.fc40.x86_64 jansson-2.13.1-7.fc39.x86_64 kernel-srpm-macros-1.0-20.fc39.noarch keyutils-libs-1.6.1-7.fc39.x86_64 krb5-libs-1.21.2-2.fc40.x86_64 libacl-2.3.1-10.fc40.x86_64 libarchive-3.7.2-1.fc40.x86_64 libattr-2.5.1-9.fc40.x86_64 libblkid-2.39.2-1.fc40.x86_64 libbrotli-1.1.0-1.fc40.x86_64 libcap-2.69-1.fc40.x86_64 libcap-ng-0.8.3-8.fc40.x86_64 libcom_err-1.47.0-2.fc39.x86_64 libcurl-8.4.0-1.fc40.x86_64 libeconf-0.5.2-1.fc40.x86_64 libevent-2.1.12-9.fc39.x86_64 libfdisk-2.39.2-1.fc40.x86_64 libffi-3.4.4-4.fc39.x86_64 libgcc-13.2.1-5.fc40.x86_64 libgomp-13.2.1-5.fc40.x86_64 libidn2-2.3.4-3.fc39.x86_64 libmount-2.39.2-1.fc40.x86_64 libnghttp2-1.58.0-1.fc40.x86_64 libnsl2-2.0.0-6.fc39.x86_64 libpkgconf-1.9.5-2.fc39.x86_64 libpsl-0.21.2-4.fc39.x86_64 libpwquality-1.4.5-6.fc39.x86_64 libselinux-3.6-0.rc1.1.fc40.x86_64 libsemanage-3.6-0.rc1.1.fc40.x86_64 libsepol-3.6-0.rc1.1.fc40.x86_64 libsigsegv-2.14-5.fc39.x86_64 libsmartcols-2.39.2-1.fc40.x86_64 libssh-0.10.5-2.fc39.x86_64 libssh-config-0.10.5-2.fc39.noarch libstdc++-13.2.1-5.fc40.x86_64 libtasn1-4.19.0-3.fc39.x86_64 libtirpc-1.3.4-0.fc40.x86_64 libunistring-1.1-5.fc40.x86_64 libutempter-1.2.1-10.fc39.x86_64 libuuid-2.39.2-1.fc40.x86_64 libverto-0.3.2-6.fc39.x86_64 libxcrypt-4.4.36-2.fc39.x86_64 libxml2-2.12.0-1.fc40.x86_64 libzstd-1.5.5-4.fc39.x86_64 lua-libs-5.4.6-3.fc39.x86_64 lua-srpm-macros-1-9.fc39.noarch lz4-libs-1.9.4-4.fc39.x86_64 mpfr-4.2.1-1.fc40.x86_64 ncurses-base-6.4-8.20231001.fc40.noarch ncurses-libs-6.4-8.20231001.fc40.x86_64 ocaml-srpm-macros-9-1.fc40.noarch openblas-srpm-macros-2-14.fc39.noarch openldap-2.6.6-1.fc39.x86_64 openssl-libs-3.1.4-1.fc40.x86_64 p11-kit-0.25.3-1.fc40.x86_64 p11-kit-trust-0.25.3-1.fc40.x86_64 package-notes-srpm-macros-0.5-9.fc39.noarch pam-1.5.3-8.fc40.x86_64 pam-libs-1.5.3-8.fc40.x86_64 patch-2.7.6-22.fc39.x86_64 pcre2-10.42-2.fc40.x86_64 pcre2-syntax-10.42-2.fc40.noarch perl-srpm-macros-1-51.fc39.noarch pkgconf-1.9.5-2.fc39.x86_64 pkgconf-m4-1.9.5-2.fc39.noarch pkgconf-pkg-config-1.9.5-2.fc39.x86_64 popt-1.19-3.fc39.x86_64 publicsuffix-list-dafsa-20230812-1.fc40.noarch pyproject-srpm-macros-1.10.0-1.fc40.noarch python-srpm-macros-3.12-4.fc40.noarch qt5-srpm-macros-5.15.11-1.fc40.noarch qt6-srpm-macros-6.6.0-1.fc40.noarch readline-8.2-4.fc39.x86_64 redhat-rpm-config-271-1.fc40.noarch rpm-4.19.0-2.fc40.x86_64 rpm-build-4.19.0-2.fc40.x86_64 rpm-build-libs-4.19.0-2.fc40.x86_64 rpm-libs-4.19.0-2.fc40.x86_64 rpm-sequoia-1.5.0-1.fc40.x86_64 rust-srpm-macros-25.2-2.fc40.noarch sed-4.8-14.fc39.x86_64 setup-2.14.4-1.fc39.noarch shadow-utils-4.14.0-2.fc40.x86_64 sqlite-libs-3.44.0-1.fc40.x86_64 systemd-libs-255~rc3-1.fc40.x86_64 tar-1.35-2.fc40.x86_64 unzip-6.0-62.fc39.x86_64 util-linux-2.39.2-1.fc40.x86_64 util-linux-core-2.39.2-1.fc40.x86_64 which-2.21-40.fc39.x86_64 xxhash-libs-0.8.2-1.fc39.x86_64 xz-5.4.5-1.fc40.x86_64 xz-libs-5.4.5-1.fc40.x86_64 zip-3.0-39.fc40.x86_64 zlib-1.2.13-5.fc40.x86_64 zstd-1.5.5-4.fc39.x86_64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1691971200 Wrote: /builddir/build/SRPMS/ProDy-2.4.1-1.fc40.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1700744584.520255/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-x86_64-1700744584.520255/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-x86_64-1700744584.520255/root/var/log/dnf.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-j3dmqnya/ProDy/ProDy.spec) Config(child) 0 minutes 47 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/ProDy-2.4.1-1.fc40.src.rpm) Config(fedora-rawhide-x86_64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1700744584.520255/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1700744584.520255/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1700744584.520255/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Finish: chroot init INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.0-2.fc40.x86_64 rpm-sequoia-1.5.0-1.fc40.x86_64 python3-dnf-4.18.1-2.fc40.noarch python3-dnf-plugins-core-4.4.3-1.fc40.noarch yum-4.18.1-2.fc40.noarch Start: build phase for ProDy-2.4.1-1.fc40.src.rpm Start: build setup for ProDy-2.4.1-1.fc40.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1691971200 Wrote: /builddir/build/SRPMS/ProDy-2.4.1-1.fc40.src.rpm No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 99 kB/s | 1.5 kB 00:00 fedora 330 kB/s | 23 kB 00:00 Dependencies resolved. =========================================================================================== Package Arch Version Repo Size =========================================================================================== Installing: gcc x86_64 13.2.1-5.fc40 fedora 34 M gcc-c++ x86_64 13.2.1-5.fc40 fedora 13 M python3-biopython x86_64 1.81-4.fc39 fedora 3.5 M python3-devel x86_64 3.12.0-2.fc40 fedora 311 k python3-matplotlib x86_64 3.8.1-1.fc40 fedora 4.4 M python3-nose noarch 1.3.7-43.fc40 fedora 346 k python3-numpy x86_64 1:1.26.0-2.fc40 fedora 7.5 M python3-scipy x86_64 1.11.1-1.fc39 fedora 16 M python3-setuptools noarch 68.2.2-1.fc40 fedora 1.5 M python3-urllib3 noarch 1.26.18-1.fc40 fedora 274 k Installing dependencies: abattis-cantarell-vf-fonts noarch 0.301-10.fc39 fedora 121 k adobe-mappings-cmap noarch 20230622-1.fc39 fedora 2.1 M adobe-mappings-cmap-deprecated noarch 20230622-1.fc39 fedora 113 k adobe-mappings-pdf noarch 20190401-5.fc39 fedora 698 k annobin-docs noarch 12.31-1.fc40 fedora 92 k annobin-plugin-gcc x86_64 12.31-1.fc40 fedora 959 k avahi-libs x86_64 0.8-24.fc39 fedora 67 k cairo x86_64 1.18.0-1.fc40 fedora 710 k cairo-gobject x86_64 1.18.0-1.fc40 fedora 19 k cpp x86_64 13.2.1-5.fc40 fedora 11 M crypto-policies-scripts noarch 20231113-1.gitb402e82.fc40 fedora 117 k cups-libs x86_64 1:2.4.7-3.fc40 fedora 267 k dbus-libs x86_64 1:1.14.10-1.fc40 fedora 155 k default-fonts-core-sans noarch 4.0-9.fc40 fedora 32 k dejavu-sans-fonts noarch 2.37-21.fc40 fedora 1.3 M expat x86_64 2.5.0-3.fc39 fedora 110 k flex x86_64 2.6.4-14.fc40 fedora 313 k flexiblas x86_64 3.3.1-5.fc39 fedora 33 k flexiblas-netlib x86_64 3.3.1-5.fc39 fedora 3.1 M flexiblas-openblas-openmp x86_64 3.3.1-5.fc39 fedora 17 k fontconfig x86_64 2.14.2-5.fc40 fedora 297 k fonts-filesystem noarch 1:2.0.5-12.fc39 fedora 8.2 k freetype x86_64 2.13.1-2.fc39 fedora 414 k fribidi x86_64 1.0.13-2.fc39 fedora 91 k gc x86_64 8.2.2-4.fc39 fedora 110 k gcc-plugin-annobin x86_64 13.2.1-5.fc40 fedora 49 k gd x86_64 2.3.3-12.fc39 fedora 139 k gdk-pixbuf2 x86_64 2.42.10-5.fc39 fedora 484 k glib2 x86_64 2.78.1-1.fc40 fedora 2.8 M glibc-devel x86_64 2.38.9000-22.fc40 fedora 97 k glibc-headers-x86 noarch 2.38.9000-22.fc40 fedora 581 k gnutls x86_64 3.8.1-3.fc40 fedora 1.1 M google-droid-sans-fonts noarch 20200215-17.fc40 fedora 2.7 M google-noto-fonts-common noarch 20230801-4.fc40 fedora 17 k google-noto-sans-vf-fonts noarch 20230801-4.fc40 fedora 583 k graphite2 x86_64 1.3.14-13.fc40 fedora 95 k graphviz x86_64 9.0.0-3.fc40 fedora 5.0 M gts x86_64 0.7.6-46.20121130.fc39 fedora 240 k guile22 x86_64 2.2.7-9.fc39 fedora 6.5 M harfbuzz x86_64 8.3.0-2.fc40 fedora 995 k highway x86_64 1.0.7-1.fc40 fedora 481 k jbig2dec-libs x86_64 0.20-1.fc40 fedora 73 k jbigkit-libs x86_64 2.1-26.fc39 fedora 53 k kernel-headers x86_64 6.7.0-0.rc2.git0.1.fc40 fedora 1.6 M lasi x86_64 1.1.3-11.fc39 fedora 54 k lcms2 x86_64 2.15-2.fc39 fedora 177 k libICE x86_64 1.1.1-1.fc40 fedora 74 k libSM x86_64 1.2.4-1.fc40 fedora 43 k libX11 x86_64 1.8.7-1.fc40 fedora 647 k libX11-common noarch 1.8.7-1.fc40 fedora 176 k libXau x86_64 1.0.11-4.fc40 fedora 31 k libXext x86_64 1.3.5-4.fc40 fedora 39 k libXft x86_64 2.3.8-4.fc40 fedora 72 k libXpm x86_64 3.5.17-1.fc40 fedora 65 k libXrender x86_64 0.9.11-4.fc40 fedora 27 k libXt x86_64 1.3.0-1.fc40 fedora 179 k libaom x86_64 3.7.0-1.fc40 fedora 1.8 M libavif x86_64 0.11.1-11.fc39 fedora 84 k libb2 x86_64 0.98.1-9.fc39 fedora 25 k libdatrie x86_64 0.2.13-7.fc39 fedora 32 k libdav1d x86_64 1.2.1-2.fc39 fedora 618 k libgfortran x86_64 13.2.1-5.fc40 fedora 906 k libgs x86_64 10.02.1-4.fc40 fedora 3.4 M libijs x86_64 0.35-19.fc39 fedora 29 k libimagequant x86_64 4.0.3-1.fc40 fedora 321 k libjpeg-turbo x86_64 2.1.4-3.fc39 fedora 183 k libjxl x86_64 1:0.8.2-3.fc40 fedora 1.2 M liblerc x86_64 4.0.0-4.fc39 fedora 201 k libmpc x86_64 1.3.1-3.fc39 fedora 70 k libpaper x86_64 1:2.1.1-1.fc39 fedora 27 k libpng x86_64 2:1.6.40-1.fc40 fedora 119 k libpq x86_64 15.3-1.fc39 fedora 215 k libqhull_r x86_64 1:8.0.2-2.fc40 fedora 199 k libquadmath x86_64 13.2.1-5.fc40 fedora 197 k libraqm x86_64 0.8.0-5.fc39 fedora 20 k librsvg2 x86_64 2.57.0-3.fc40 fedora 1.6 M libstdc++-devel x86_64 13.2.1-5.fc40 fedora 2.6 M libthai x86_64 0.1.29-6.fc39 fedora 213 k libtiff x86_64 4.5.0-3.fc40 fedora 305 k libtool-ltdl x86_64 2.4.7-8.fc40 fedora 36 k libvmaf x86_64 2.3.0-6.fc39 fedora 180 k libwebp x86_64 1.3.2-2.fc40 fedora 284 k libxcb x86_64 1.16-2.fc40 fedora 238 k libxcrypt-devel x86_64 4.4.36-2.fc39 fedora 30 k libxslt x86_64 1.1.39-1.fc40 fedora 187 k m4 x86_64 1.4.19-7.fc40 fedora 303 k make x86_64 1:4.4.1-2.fc39 fedora 589 k mariadb-connector-c x86_64 3.3.5-2.fc39 fedora 208 k mariadb-connector-c-config noarch 3.3.5-2.fc39 fedora 8.8 k mpdecimal x86_64 2.5.1-7.fc39 fedora 89 k mysql-connector-python3 noarch 8.0.21-10.fc39 fedora 574 k netpbm x86_64 11.02.00-2.fc39 fedora 185 k nettle x86_64 3.9.1-2.fc39 fedora 425 k nspr x86_64 4.35.0-15.fc40 fedora 137 k nss x86_64 3.94.0-2.fc40 fedora 695 k nss-softokn x86_64 3.94.0-2.fc40 fedora 413 k nss-softokn-freebl x86_64 3.94.0-2.fc40 fedora 350 k nss-sysinit x86_64 3.94.0-2.fc40 fedora 18 k nss-util x86_64 3.94.0-2.fc40 fedora 87 k openblas x86_64 0.3.24-1.fc40 fedora 37 k openblas-openmp x86_64 0.3.24-1.fc40 fedora 5.0 M openjpeg2 x86_64 2.5.0-5.fc40 fedora 178 k pango x86_64 1.51.0-1.fc40 fedora 343 k pixman x86_64 0.42.2-2.fc39 fedora 288 k poppler x86_64 23.08.0-1.fc39 fedora 1.2 M poppler-data noarch 0.4.11-5.fc39 fedora 2.0 M poppler-glib x86_64 23.08.0-1.fc39 fedora 185 k protobuf x86_64 3.19.6-6.fc39 fedora 1.0 M pyproject-rpm-macros noarch 1.10.0-1.fc40 fedora 41 k python-pip-wheel noarch 23.2.1-1.fc39 fedora 1.5 M python-rpm-macros noarch 3.12-4.fc40 fedora 19 k python3 x86_64 3.12.0-2.fc40 fedora 26 k python3-appdirs noarch 1.4.4-11.fc39 fedora 23 k python3-brotli x86_64 1.1.0-1.fc40 fedora 337 k python3-cairo x86_64 1.25.1-1.fc40 fedora 128 k python3-charset-normalizer noarch 3.3.2-1.fc40 fedora 107 k python3-contourpy x86_64 1.2.0-1.fc40 fedora 265 k python3-cycler noarch 0.11.0-9.fc39 fedora 21 k python3-dateutil noarch 1:2.8.2-11.fc40 fedora 356 k python3-fonttools x86_64 4.44.3-1.fc40 fedora 2.9 M python3-fs noarch 2.4.16-5.fc39 fedora 302 k python3-idna noarch 3.4-5.fc40 fedora 109 k python3-isodate noarch 0.6.1-9.fc39 fedora 77 k python3-kiwisolver x86_64 1.4.5-1.fc40 fedora 68 k python3-libs x86_64 3.12.0-2.fc40 fedora 9.2 M python3-lxml x86_64 4.9.3-3.fc40 fedora 1.4 M python3-matplotlib-data noarch 3.8.1-1.fc40 fedora 524 k python3-matplotlib-data-fonts noarch 3.8.1-1.fc40 fedora 2.3 M python3-matplotlib-tk x86_64 3.8.1-1.fc40 fedora 48 k python3-mysqlclient x86_64 2.1.1-5.fc39 fedora 104 k python3-networkx noarch 3.1-4.fc39~bootstrap fedora 3.0 M python3-numpy-f2py x86_64 1:1.26.0-2.fc40 fedora 509 k python3-olefile noarch 0.46-21.fc39 fedora 66 k python3-packaging noarch 23.2-2.fc40 fedora 125 k python3-pillow x86_64 10.1.0-1.fc40 fedora 927 k python3-pillow-tk x86_64 10.1.0-1.fc40 fedora 29 k python3-pooch noarch 1.5.2-12.fc39 fedora 126 k python3-protobuf x86_64 3.19.6-6.fc39 fedora 414 k python3-psycopg2 x86_64 2.9.6-3.fc39 fedora 208 k python3-pygraphviz x86_64 1.11-3.fc39 fedora 155 k python3-pyparsing noarch 3.0.9-11.fc39 fedora 254 k python3-rdflib noarch 6.2.0-4.fc39 fedora 940 k python3-reportlab noarch 4.0.7-1.fc40 fedora 3.3 M python3-requests noarch 2.31.0-1.fc40 copr_base 142 k python3-rpm-generators noarch 14-8.fc40 fedora 30 k python3-rpm-macros noarch 3.12-4.fc40 fedora 14 k python3-six noarch 1.16.0-12.fc39 fedora 41 k python3-tkinter x86_64 3.12.0-2.fc40 fedora 407 k rav1e-libs x86_64 0.6.6-3.fc40 fedora 1.0 M rsvg-pixbuf-loader x86_64 2.57.0-3.fc40 fedora 16 k shared-mime-info x86_64 2.3-1.fc40 fedora 391 k svt-av1-libs x86_64 1.4.1-3.fc39 fedora 2.0 M tcl x86_64 1:8.6.13-1.fc40 fedora 1.1 M tk x86_64 1:8.6.13-1.fc40 fedora 1.6 M tzdata noarch 2023c-4.fc40 fedora 717 k urw-base35-bookman-fonts noarch 20200910-18.fc39 fedora 847 k urw-base35-c059-fonts noarch 20200910-18.fc39 fedora 874 k urw-base35-d050000l-fonts noarch 20200910-18.fc39 fedora 76 k urw-base35-fonts noarch 20200910-18.fc39 fedora 10 k urw-base35-fonts-common noarch 20200910-18.fc39 fedora 21 k urw-base35-gothic-fonts noarch 20200910-18.fc39 fedora 643 k urw-base35-nimbus-mono-ps-fonts noarch 20200910-18.fc39 fedora 795 k urw-base35-nimbus-roman-fonts noarch 20200910-18.fc39 fedora 856 k urw-base35-nimbus-sans-fonts noarch 20200910-18.fc39 fedora 1.3 M urw-base35-p052-fonts noarch 20200910-18.fc39 fedora 974 k urw-base35-standard-symbols-ps-fonts noarch 20200910-18.fc39 fedora 42 k urw-base35-z003-fonts noarch 20200910-18.fc39 fedora 276 k wise2 x86_64 2.4.1-18.fc39 fedora 989 k xml-common noarch 0.6.3-62.fc40 fedora 31 k Transaction Summary =========================================================================================== Install 179 Packages Total download size: 202 M Installed size: 771 M Downloading Packages: (1/179): python3-requests-2.31.0-1.fc40.noarch. 9.4 MB/s | 142 kB 00:00 (2/179): abattis-cantarell-vf-fonts-0.301-10.fc 6.0 MB/s | 121 kB 00:00 (3/179): adobe-mappings-cmap-20230622-1.fc39.no 100 MB/s | 2.1 MB 00:00 (4/179): adobe-mappings-cmap-deprecated-2023062 17 MB/s | 113 kB 00:00 (5/179): adobe-mappings-pdf-20190401-5.fc39.noa 116 MB/s | 698 kB 00:00 (6/179): annobin-docs-12.31-1.fc40.noarch.rpm 13 MB/s | 92 kB 00:00 (7/179): annobin-plugin-gcc-12.31-1.fc40.x86_64 119 MB/s | 959 kB 00:00 (8/179): avahi-libs-0.8-24.fc39.x86_64.rpm 28 MB/s | 67 kB 00:00 (9/179): cairo-gobject-1.18.0-1.fc40.x86_64.rpm 7.6 MB/s | 19 kB 00:00 (10/179): cairo-1.18.0-1.fc40.x86_64.rpm 145 MB/s | 710 kB 00:00 (11/179): crypto-policies-scripts-20231113-1.gi 24 MB/s | 117 kB 00:00 (12/179): cups-libs-2.4.7-3.fc40.x86_64.rpm 75 MB/s | 267 kB 00:00 (13/179): dbus-libs-1.14.10-1.fc40.x86_64.rpm 36 MB/s | 155 kB 00:00 (14/179): default-fonts-core-sans-4.0-9.fc40.no 8.1 MB/s | 32 kB 00:00 (15/179): expat-2.5.0-3.fc39.x86_64.rpm 29 MB/s | 110 kB 00:00 (16/179): dejavu-sans-fonts-2.37-21.fc40.noarch 202 MB/s | 1.3 MB 00:00 (17/179): flex-2.6.4-14.fc40.x86_64.rpm 48 MB/s | 313 kB 00:00 (18/179): flexiblas-3.3.1-5.fc39.x86_64.rpm 9.3 MB/s | 33 kB 00:00 (19/179): flexiblas-openblas-openmp-3.3.1-5.fc3 4.8 MB/s | 17 kB 00:00 (20/179): fontconfig-2.14.2-5.fc40.x86_64.rpm 55 MB/s | 297 kB 00:00 (21/179): fonts-filesystem-2.0.5-12.fc39.noarch 2.2 MB/s | 8.2 kB 00:00 (22/179): cpp-13.2.1-5.fc40.x86_64.rpm 226 MB/s | 11 MB 00:00 (23/179): flexiblas-netlib-3.3.1-5.fc39.x86_64. 112 MB/s | 3.1 MB 00:00 (24/179): freetype-2.13.1-2.fc39.x86_64.rpm 28 MB/s | 414 kB 00:00 (25/179): fribidi-1.0.13-2.fc39.x86_64.rpm 25 MB/s | 91 kB 00:00 (26/179): gc-8.2.2-4.fc39.x86_64.rpm 47 MB/s | 110 kB 00:00 (27/179): gcc-plugin-annobin-13.2.1-5.fc40.x86_ 8.6 MB/s | 49 kB 00:00 (28/179): gd-2.3.3-12.fc39.x86_64.rpm 27 MB/s | 139 kB 00:00 (29/179): gdk-pixbuf2-2.42.10-5.fc39.x86_64.rpm 69 MB/s | 484 kB 00:00 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urw-base35-z003-fonts-20200910-18.fc 88 MB/s | 276 kB 00:00 (176/179): urw-base35-p052-fonts-20200910-18.fc 83 MB/s | 974 kB 00:00 (177/179): xml-common-0.6.3-62.fc40.noarch.rpm 16 MB/s | 31 kB 00:00 (178/179): urw-base35-nimbus-sans-fonts-2020091 71 MB/s | 1.3 MB 00:00 (179/179): wise2-2.4.1-18.fc39.x86_64.rpm 38 MB/s | 989 kB 00:00 -------------------------------------------------------------------------------- Total 252 MB/s | 202 MB 00:00 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Installing : libpng-2:1.6.40-1.fc40.x86_64 1/179 Installing : nspr-4.35.0-15.fc40.x86_64 2/179 Installing : libjpeg-turbo-2.1.4-3.fc39.x86_64 3/179 Installing : fonts-filesystem-1:2.0.5-12.fc39.noarch 4/179 Installing : urw-base35-fonts-common-20200910-18.fc39.noarch 5/179 Installing : nss-util-3.94.0-2.fc40.x86_64 6/179 Installing : libwebp-1.3.2-2.fc40.x86_64 7/179 Installing : python-rpm-macros-3.12-4.fc40.noarch 8/179 Installing : openjpeg2-2.5.0-5.fc40.x86_64 9/179 Installing : libmpc-1.3.1-3.fc39.x86_64 10/179 Installing : libgfortran-13.2.1-5.fc40.x86_64 11/179 Installing : lcms2-2.15-2.fc39.x86_64 12/179 Installing : python3-rpm-macros-3.12-4.fc40.noarch 13/179 Installing : dejavu-sans-fonts-2.37-21.fc40.noarch 14/179 Installing : python3-matplotlib-data-fonts-3.8.1-1.fc40.noarc 15/179 Installing : python3-matplotlib-data-3.8.1-1.fc40.noarch 16/179 Installing : tzdata-2023c-4.fc40.noarch 17/179 Installing : tcl-1:8.6.13-1.fc40.x86_64 18/179 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fontconfig-2.14.2-5.fc40.x86_64 fonts-filesystem-1:2.0.5-12.fc39.noarch freetype-2.13.1-2.fc39.x86_64 fribidi-1.0.13-2.fc39.x86_64 gc-8.2.2-4.fc39.x86_64 gcc-13.2.1-5.fc40.x86_64 gcc-c++-13.2.1-5.fc40.x86_64 gcc-plugin-annobin-13.2.1-5.fc40.x86_64 gd-2.3.3-12.fc39.x86_64 gdk-pixbuf2-2.42.10-5.fc39.x86_64 glib2-2.78.1-1.fc40.x86_64 glibc-devel-2.38.9000-22.fc40.x86_64 glibc-headers-x86-2.38.9000-22.fc40.noarch gnutls-3.8.1-3.fc40.x86_64 google-droid-sans-fonts-20200215-17.fc40.noarch google-noto-fonts-common-20230801-4.fc40.noarch google-noto-sans-vf-fonts-20230801-4.fc40.noarch graphite2-1.3.14-13.fc40.x86_64 graphviz-9.0.0-3.fc40.x86_64 gts-0.7.6-46.20121130.fc39.x86_64 guile22-2.2.7-9.fc39.x86_64 harfbuzz-8.3.0-2.fc40.x86_64 highway-1.0.7-1.fc40.x86_64 jbig2dec-libs-0.20-1.fc40.x86_64 jbigkit-libs-2.1-26.fc39.x86_64 kernel-headers-6.7.0-0.rc2.git0.1.fc40.x86_64 lasi-1.1.3-11.fc39.x86_64 lcms2-2.15-2.fc39.x86_64 libICE-1.1.1-1.fc40.x86_64 libSM-1.2.4-1.fc40.x86_64 libX11-1.8.7-1.fc40.x86_64 libX11-common-1.8.7-1.fc40.noarch libXau-1.0.11-4.fc40.x86_64 libXext-1.3.5-4.fc40.x86_64 libXft-2.3.8-4.fc40.x86_64 libXpm-3.5.17-1.fc40.x86_64 libXrender-0.9.11-4.fc40.x86_64 libXt-1.3.0-1.fc40.x86_64 libaom-3.7.0-1.fc40.x86_64 libavif-0.11.1-11.fc39.x86_64 libb2-0.98.1-9.fc39.x86_64 libdatrie-0.2.13-7.fc39.x86_64 libdav1d-1.2.1-2.fc39.x86_64 libgfortran-13.2.1-5.fc40.x86_64 libgs-10.02.1-4.fc40.x86_64 libijs-0.35-19.fc39.x86_64 libimagequant-4.0.3-1.fc40.x86_64 libjpeg-turbo-2.1.4-3.fc39.x86_64 libjxl-1:0.8.2-3.fc40.x86_64 liblerc-4.0.0-4.fc39.x86_64 libmpc-1.3.1-3.fc39.x86_64 libpaper-1:2.1.1-1.fc39.x86_64 libpng-2:1.6.40-1.fc40.x86_64 libpq-15.3-1.fc39.x86_64 libqhull_r-1:8.0.2-2.fc40.x86_64 libquadmath-13.2.1-5.fc40.x86_64 libraqm-0.8.0-5.fc39.x86_64 librsvg2-2.57.0-3.fc40.x86_64 libstdc++-devel-13.2.1-5.fc40.x86_64 libthai-0.1.29-6.fc39.x86_64 libtiff-4.5.0-3.fc40.x86_64 libtool-ltdl-2.4.7-8.fc40.x86_64 libvmaf-2.3.0-6.fc39.x86_64 libwebp-1.3.2-2.fc40.x86_64 libxcb-1.16-2.fc40.x86_64 libxcrypt-devel-4.4.36-2.fc39.x86_64 libxslt-1.1.39-1.fc40.x86_64 m4-1.4.19-7.fc40.x86_64 make-1:4.4.1-2.fc39.x86_64 mariadb-connector-c-3.3.5-2.fc39.x86_64 mariadb-connector-c-config-3.3.5-2.fc39.noarch mpdecimal-2.5.1-7.fc39.x86_64 mysql-connector-python3-8.0.21-10.fc39.noarch netpbm-11.02.00-2.fc39.x86_64 nettle-3.9.1-2.fc39.x86_64 nspr-4.35.0-15.fc40.x86_64 nss-3.94.0-2.fc40.x86_64 nss-softokn-3.94.0-2.fc40.x86_64 nss-softokn-freebl-3.94.0-2.fc40.x86_64 nss-sysinit-3.94.0-2.fc40.x86_64 nss-util-3.94.0-2.fc40.x86_64 openblas-0.3.24-1.fc40.x86_64 openblas-openmp-0.3.24-1.fc40.x86_64 openjpeg2-2.5.0-5.fc40.x86_64 pango-1.51.0-1.fc40.x86_64 pixman-0.42.2-2.fc39.x86_64 poppler-23.08.0-1.fc39.x86_64 poppler-data-0.4.11-5.fc39.noarch poppler-glib-23.08.0-1.fc39.x86_64 protobuf-3.19.6-6.fc39.x86_64 pyproject-rpm-macros-1.10.0-1.fc40.noarch python-pip-wheel-23.2.1-1.fc39.noarch python-rpm-macros-3.12-4.fc40.noarch python3-3.12.0-2.fc40.x86_64 python3-appdirs-1.4.4-11.fc39.noarch python3-biopython-1.81-4.fc39.x86_64 python3-brotli-1.1.0-1.fc40.x86_64 python3-cairo-1.25.1-1.fc40.x86_64 python3-charset-normalizer-3.3.2-1.fc40.noarch python3-contourpy-1.2.0-1.fc40.x86_64 python3-cycler-0.11.0-9.fc39.noarch python3-dateutil-1:2.8.2-11.fc40.noarch python3-devel-3.12.0-2.fc40.x86_64 python3-fonttools-4.44.3-1.fc40.x86_64 python3-fs-2.4.16-5.fc39.noarch python3-idna-3.4-5.fc40.noarch python3-isodate-0.6.1-9.fc39.noarch python3-kiwisolver-1.4.5-1.fc40.x86_64 python3-libs-3.12.0-2.fc40.x86_64 python3-lxml-4.9.3-3.fc40.x86_64 python3-matplotlib-3.8.1-1.fc40.x86_64 python3-matplotlib-data-3.8.1-1.fc40.noarch python3-matplotlib-data-fonts-3.8.1-1.fc40.noarch python3-matplotlib-tk-3.8.1-1.fc40.x86_64 python3-mysqlclient-2.1.1-5.fc39.x86_64 python3-networkx-3.1-4.fc39~bootstrap.noarch python3-nose-1.3.7-43.fc40.noarch python3-numpy-1:1.26.0-2.fc40.x86_64 python3-numpy-f2py-1:1.26.0-2.fc40.x86_64 python3-olefile-0.46-21.fc39.noarch python3-packaging-23.2-2.fc40.noarch python3-pillow-10.1.0-1.fc40.x86_64 python3-pillow-tk-10.1.0-1.fc40.x86_64 python3-pooch-1.5.2-12.fc39.noarch python3-protobuf-3.19.6-6.fc39.x86_64 python3-psycopg2-2.9.6-3.fc39.x86_64 python3-pygraphviz-1.11-3.fc39.x86_64 python3-pyparsing-3.0.9-11.fc39.noarch python3-rdflib-6.2.0-4.fc39.noarch python3-reportlab-4.0.7-1.fc40.noarch python3-requests-2.31.0-1.fc40.noarch python3-rpm-generators-14-8.fc40.noarch python3-rpm-macros-3.12-4.fc40.noarch python3-scipy-1.11.1-1.fc39.x86_64 python3-setuptools-68.2.2-1.fc40.noarch python3-six-1.16.0-12.fc39.noarch python3-tkinter-3.12.0-2.fc40.x86_64 python3-urllib3-1.26.18-1.fc40.noarch rav1e-libs-0.6.6-3.fc40.x86_64 rsvg-pixbuf-loader-2.57.0-3.fc40.x86_64 shared-mime-info-2.3-1.fc40.x86_64 svt-av1-libs-1.4.1-3.fc39.x86_64 tcl-1:8.6.13-1.fc40.x86_64 tk-1:8.6.13-1.fc40.x86_64 tzdata-2023c-4.fc40.noarch urw-base35-bookman-fonts-20200910-18.fc39.noarch urw-base35-c059-fonts-20200910-18.fc39.noarch urw-base35-d050000l-fonts-20200910-18.fc39.noarch urw-base35-fonts-20200910-18.fc39.noarch urw-base35-fonts-common-20200910-18.fc39.noarch urw-base35-gothic-fonts-20200910-18.fc39.noarch urw-base35-nimbus-mono-ps-fonts-20200910-18.fc39.noarch urw-base35-nimbus-roman-fonts-20200910-18.fc39.noarch urw-base35-nimbus-sans-fonts-20200910-18.fc39.noarch urw-base35-p052-fonts-20200910-18.fc39.noarch urw-base35-standard-symbols-ps-fonts-20200910-18.fc39.noarch urw-base35-z003-fonts-20200910-18.fc39.noarch wise2-2.4.1-18.fc39.x86_64 xml-common-0.6.3-62.fc40.noarch Complete! Finish: build setup for ProDy-2.4.1-1.fc40.src.rpm Start: rpmbuild ProDy-2.4.1-1.fc40.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1691971200 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.TOKBe6 + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf ProDy-2.4.1 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/ProDy-2.4.1.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd ProDy-2.4.1 + rm -rf /builddir/build/BUILD/ProDy-2.4.1-SPECPARTS + /usr/bin/mkdir -p /builddir/build/BUILD/ProDy-2.4.1-SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/ProDy-change_requires.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + find prody/proteins/ccealign -name '*.h' -exec chmod 0644 '{}' ';' + find prody/proteins/ccealign -name '*.cpp' -exec chmod 0644 '{}' ';' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.AljbYH + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd ProDy-2.4.1 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + /usr/bin/python3 setup.py build '--executable=/usr/bin/python3 -sP' running build running build_py creating build creating build/lib.linux-x86_64-cpython-312 creating build/lib.linux-x86_64-cpython-312/prody copying prody/__init__.py -> build/lib.linux-x86_64-cpython-312/prody creating build/lib.linux-x86_64-cpython-312/prody/atomic copying prody/atomic/subset.py -> build/lib.linux-x86_64-cpython-312/prody/atomic copying prody/atomic/selection.py -> build/lib.linux-x86_64-cpython-312/prody/atomic copying prody/atomic/select.py -> build/lib.linux-x86_64-cpython-312/prody/atomic copying prody/atomic/segment.py -> build/lib.linux-x86_64-cpython-312/prody/atomic copying prody/atomic/residue.py -> build/lib.linux-x86_64-cpython-312/prody/atomic copying prody/atomic/pointer.py -> build/lib.linux-x86_64-cpython-312/prody/atomic copying prody/atomic/nbexclusion.py -> build/lib.linux-x86_64-cpython-312/prody/atomic copying prody/atomic/improper.py -> build/lib.linux-x86_64-cpython-312/prody/atomic copying prody/atomic/hierview.py -> build/lib.linux-x86_64-cpython-312/prody/atomic copying prody/atomic/functions.py -> build/lib.linux-x86_64-cpython-312/prody/atomic copying prody/atomic/flags.py -> build/lib.linux-x86_64-cpython-312/prody/atomic copying prody/atomic/fields.py -> build/lib.linux-x86_64-cpython-312/prody/atomic copying prody/atomic/donor.py -> build/lib.linux-x86_64-cpython-312/prody/atomic copying prody/atomic/dihedral.py -> build/lib.linux-x86_64-cpython-312/prody/atomic copying prody/atomic/crossterm.py -> build/lib.linux-x86_64-cpython-312/prody/atomic copying prody/atomic/chain.py -> build/lib.linux-x86_64-cpython-312/prody/atomic copying prody/atomic/bond.py -> build/lib.linux-x86_64-cpython-312/prody/atomic copying prody/atomic/atommap.py -> build/lib.linux-x86_64-cpython-312/prody/atomic copying prody/atomic/atomic.py -> build/lib.linux-x86_64-cpython-312/prody/atomic copying prody/atomic/atomgroup.py -> build/lib.linux-x86_64-cpython-312/prody/atomic copying prody/atomic/atom.py -> build/lib.linux-x86_64-cpython-312/prody/atomic copying prody/atomic/angle.py -> build/lib.linux-x86_64-cpython-312/prody/atomic copying prody/atomic/acceptor.py -> build/lib.linux-x86_64-cpython-312/prody/atomic copying prody/atomic/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/atomic creating build/lib.linux-x86_64-cpython-312/prody/database copying prody/database/uniprot.py -> build/lib.linux-x86_64-cpython-312/prody/database copying prody/database/quartataweb.py -> build/lib.linux-x86_64-cpython-312/prody/database copying prody/database/pfam.py -> build/lib.linux-x86_64-cpython-312/prody/database copying prody/database/goa.py -> build/lib.linux-x86_64-cpython-312/prody/database copying prody/database/dali.py -> build/lib.linux-x86_64-cpython-312/prody/database copying prody/database/cath.py -> build/lib.linux-x86_64-cpython-312/prody/database copying prody/database/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/database creating build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/vmdfile.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/signature.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/sampling.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/rtb.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/plotting.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/perturb.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/pca.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/nmdfile.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/nma.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/modeset.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/mode.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/mechstiff.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/imanm.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/heatmapper.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/gnm.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/gamma.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/functions.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/exgnm.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/exanm.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/essa.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/entropy.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/editing.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/compare.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/clustenm.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/bildfile.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/bbenm.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/anm.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/analysis.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/adaptive.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics copying prody/dynamics/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/dynamics creating build/lib.linux-x86_64-cpython-312/prody/ensemble copying prody/ensemble/pdbensemble.py -> build/lib.linux-x86_64-cpython-312/prody/ensemble copying prody/ensemble/functions.py -> build/lib.linux-x86_64-cpython-312/prody/ensemble copying prody/ensemble/ensemble.py -> build/lib.linux-x86_64-cpython-312/prody/ensemble copying prody/ensemble/conformation.py -> build/lib.linux-x86_64-cpython-312/prody/ensemble copying prody/ensemble/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/ensemble creating build/lib.linux-x86_64-cpython-312/prody/kdtree copying prody/kdtree/kdtree.py -> build/lib.linux-x86_64-cpython-312/prody/kdtree copying prody/kdtree/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/kdtree creating build/lib.linux-x86_64-cpython-312/prody/measure copying prody/measure/transform.py -> build/lib.linux-x86_64-cpython-312/prody/measure copying prody/measure/measure.py -> build/lib.linux-x86_64-cpython-312/prody/measure copying prody/measure/contacts.py -> build/lib.linux-x86_64-cpython-312/prody/measure copying prody/measure/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/measure creating build/lib.linux-x86_64-cpython-312/prody/proteins copying prody/proteins/wwpdb.py -> build/lib.linux-x86_64-cpython-312/prody/proteins copying prody/proteins/waterbridges.py -> build/lib.linux-x86_64-cpython-312/prody/proteins copying prody/proteins/stride.py -> build/lib.linux-x86_64-cpython-312/prody/proteins copying prody/proteins/starfile.py -> build/lib.linux-x86_64-cpython-312/prody/proteins copying prody/proteins/pdbfile.py -> build/lib.linux-x86_64-cpython-312/prody/proteins copying prody/proteins/pdbclusters.py -> build/lib.linux-x86_64-cpython-312/prody/proteins copying prody/proteins/localpdb.py -> build/lib.linux-x86_64-cpython-312/prody/proteins copying prody/proteins/header.py -> build/lib.linux-x86_64-cpython-312/prody/proteins copying prody/proteins/functions.py -> build/lib.linux-x86_64-cpython-312/prody/proteins copying prody/proteins/fixer.py -> build/lib.linux-x86_64-cpython-312/prody/proteins copying prody/proteins/emdfile.py -> build/lib.linux-x86_64-cpython-312/prody/proteins copying prody/proteins/dssp.py -> build/lib.linux-x86_64-cpython-312/prody/proteins copying prody/proteins/compare.py -> build/lib.linux-x86_64-cpython-312/prody/proteins copying prody/proteins/cifheader.py -> build/lib.linux-x86_64-cpython-312/prody/proteins copying prody/proteins/ciffile.py -> build/lib.linux-x86_64-cpython-312/prody/proteins copying prody/proteins/blastpdb.py -> build/lib.linux-x86_64-cpython-312/prody/proteins copying prody/proteins/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/proteins creating build/lib.linux-x86_64-cpython-312/prody/sequence copying prody/sequence/sequence.py -> build/lib.linux-x86_64-cpython-312/prody/sequence copying prody/sequence/plotting.py -> build/lib.linux-x86_64-cpython-312/prody/sequence copying prody/sequence/msafile.py -> build/lib.linux-x86_64-cpython-312/prody/sequence copying prody/sequence/msa.py -> build/lib.linux-x86_64-cpython-312/prody/sequence copying prody/sequence/analysis.py -> build/lib.linux-x86_64-cpython-312/prody/sequence copying prody/sequence/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/sequence creating build/lib.linux-x86_64-cpython-312/prody/trajectory copying prody/trajectory/trajfile.py -> build/lib.linux-x86_64-cpython-312/prody/trajectory copying prody/trajectory/trajectory.py -> build/lib.linux-x86_64-cpython-312/prody/trajectory copying prody/trajectory/trajbase.py -> build/lib.linux-x86_64-cpython-312/prody/trajectory copying prody/trajectory/psffile.py -> build/lib.linux-x86_64-cpython-312/prody/trajectory copying prody/trajectory/frame.py -> build/lib.linux-x86_64-cpython-312/prody/trajectory copying prody/trajectory/dcdfile.py -> build/lib.linux-x86_64-cpython-312/prody/trajectory copying prody/trajectory/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/trajectory creating build/lib.linux-x86_64-cpython-312/prody/chromatin copying prody/chromatin/straw.py -> build/lib.linux-x86_64-cpython-312/prody/chromatin copying prody/chromatin/norm.py -> build/lib.linux-x86_64-cpython-312/prody/chromatin copying prody/chromatin/hic.py -> build/lib.linux-x86_64-cpython-312/prody/chromatin copying prody/chromatin/functions.py -> build/lib.linux-x86_64-cpython-312/prody/chromatin copying prody/chromatin/cluster.py -> build/lib.linux-x86_64-cpython-312/prody/chromatin copying prody/chromatin/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/chromatin creating build/lib.linux-x86_64-cpython-312/prody/compounds copying prody/compounds/pdbligands.py -> build/lib.linux-x86_64-cpython-312/prody/compounds copying prody/compounds/functions.py -> build/lib.linux-x86_64-cpython-312/prody/compounds copying prody/compounds/ccd.py -> build/lib.linux-x86_64-cpython-312/prody/compounds copying prody/compounds/bird.py -> build/lib.linux-x86_64-cpython-312/prody/compounds copying prody/compounds/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/compounds creating build/lib.linux-x86_64-cpython-312/prody/domain_decomposition copying prody/domain_decomposition/spectrus.py -> build/lib.linux-x86_64-cpython-312/prody/domain_decomposition copying prody/domain_decomposition/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/domain_decomposition creating build/lib.linux-x86_64-cpython-312/prody/utilities copying prody/utilities/settings.py -> build/lib.linux-x86_64-cpython-312/prody/utilities copying prody/utilities/seqtools.py -> build/lib.linux-x86_64-cpython-312/prody/utilities copying prody/utilities/pathtools.py -> build/lib.linux-x86_64-cpython-312/prody/utilities copying prody/utilities/misctools.py -> build/lib.linux-x86_64-cpython-312/prody/utilities copying prody/utilities/logger.py -> build/lib.linux-x86_64-cpython-312/prody/utilities copying prody/utilities/legacy.py -> build/lib.linux-x86_64-cpython-312/prody/utilities copying prody/utilities/laptools.py -> build/lib.linux-x86_64-cpython-312/prody/utilities copying prody/utilities/eigtools.py -> build/lib.linux-x86_64-cpython-312/prody/utilities copying prody/utilities/drawtools.py -> build/lib.linux-x86_64-cpython-312/prody/utilities copying prody/utilities/doctools.py -> build/lib.linux-x86_64-cpython-312/prody/utilities copying prody/utilities/checkers.py -> build/lib.linux-x86_64-cpython-312/prody/utilities copying prody/utilities/catchall.py -> build/lib.linux-x86_64-cpython-312/prody/utilities copying prody/utilities/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/utilities copying prody/utilities/TreeConstruction.py -> build/lib.linux-x86_64-cpython-312/prody/utilities creating build/lib.linux-x86_64-cpython-312/prody/apps copying prody/apps/apptools.py -> build/lib.linux-x86_64-cpython-312/prody/apps copying prody/apps/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/apps creating build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps copying prody/apps/prody_apps/prody_select.py -> build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps copying prody/apps/prody_apps/prody_pca.py -> build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps copying prody/apps/prody_apps/prody_gnm.py -> build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps copying prody/apps/prody_apps/prody_fetch.py -> build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps copying prody/apps/prody_apps/prody_energy.py -> build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps copying prody/apps/prody_apps/prody_eda.py -> build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps copying prody/apps/prody_apps/prody_contacts.py -> build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps copying prody/apps/prody_apps/prody_clustenm.py -> build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps copying prody/apps/prody_apps/prody_catdcd.py -> build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps copying prody/apps/prody_apps/prody_blast.py -> build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps copying prody/apps/prody_apps/prody_biomol.py -> build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps copying prody/apps/prody_apps/prody_anm.py -> build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps copying prody/apps/prody_apps/prody_align.py -> build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps copying prody/apps/prody_apps/nmaoptions.py -> build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps copying prody/apps/prody_apps/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps creating build/lib.linux-x86_64-cpython-312/prody/apps/evol_apps copying prody/apps/evol_apps/evol_search.py -> build/lib.linux-x86_64-cpython-312/prody/apps/evol_apps copying prody/apps/evol_apps/evol_refine.py -> build/lib.linux-x86_64-cpython-312/prody/apps/evol_apps copying prody/apps/evol_apps/evol_rankorder.py -> build/lib.linux-x86_64-cpython-312/prody/apps/evol_apps copying prody/apps/evol_apps/evol_occupancy.py -> build/lib.linux-x86_64-cpython-312/prody/apps/evol_apps copying prody/apps/evol_apps/evol_merge.py -> build/lib.linux-x86_64-cpython-312/prody/apps/evol_apps copying prody/apps/evol_apps/evol_filter.py -> build/lib.linux-x86_64-cpython-312/prody/apps/evol_apps copying prody/apps/evol_apps/evol_fetch.py -> build/lib.linux-x86_64-cpython-312/prody/apps/evol_apps copying prody/apps/evol_apps/evol_conserv.py -> build/lib.linux-x86_64-cpython-312/prody/apps/evol_apps copying prody/apps/evol_apps/evol_coevol.py -> build/lib.linux-x86_64-cpython-312/prody/apps/evol_apps copying prody/apps/evol_apps/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/apps/evol_apps creating build/lib.linux-x86_64-cpython-312/prody/tests copying prody/tests/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/tests creating build/lib.linux-x86_64-cpython-312/prody/tests/apps copying prody/tests/apps/test_prody_pca.py -> build/lib.linux-x86_64-cpython-312/prody/tests/apps copying prody/tests/apps/test_prody_gnm.py -> build/lib.linux-x86_64-cpython-312/prody/tests/apps copying prody/tests/apps/test_prody_examples.py -> build/lib.linux-x86_64-cpython-312/prody/tests/apps copying prody/tests/apps/test_prody_catdcd.py -> build/lib.linux-x86_64-cpython-312/prody/tests/apps copying prody/tests/apps/test_prody_anm.py -> build/lib.linux-x86_64-cpython-312/prody/tests/apps copying prody/tests/apps/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/tests/apps creating build/lib.linux-x86_64-cpython-312/prody/tests/atomic copying prody/tests/atomic/test_subset.py -> build/lib.linux-x86_64-cpython-312/prody/tests/atomic copying prody/tests/atomic/test_select.py -> build/lib.linux-x86_64-cpython-312/prody/tests/atomic copying prody/tests/atomic/test_hierview.py -> build/lib.linux-x86_64-cpython-312/prody/tests/atomic copying prody/tests/atomic/test_fragment.py -> build/lib.linux-x86_64-cpython-312/prody/tests/atomic copying prody/tests/atomic/test_atommap.py -> build/lib.linux-x86_64-cpython-312/prody/tests/atomic copying prody/tests/atomic/test_atomic.py -> build/lib.linux-x86_64-cpython-312/prody/tests/atomic copying prody/tests/atomic/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/tests/atomic creating build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles creating build/lib.linux-x86_64-cpython-312/prody/tests/dynamics copying prody/tests/dynamics/test_signature.py -> build/lib.linux-x86_64-cpython-312/prody/tests/dynamics copying prody/tests/dynamics/test_pca.py -> build/lib.linux-x86_64-cpython-312/prody/tests/dynamics copying prody/tests/dynamics/test_enms.py -> build/lib.linux-x86_64-cpython-312/prody/tests/dynamics copying prody/tests/dynamics/test_editing.py -> build/lib.linux-x86_64-cpython-312/prody/tests/dynamics copying prody/tests/dynamics/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/tests/dynamics creating build/lib.linux-x86_64-cpython-312/prody/tests/ensemble copying prody/tests/ensemble/test_pdbensemble.py -> build/lib.linux-x86_64-cpython-312/prody/tests/ensemble copying prody/tests/ensemble/test_functions.py -> build/lib.linux-x86_64-cpython-312/prody/tests/ensemble copying prody/tests/ensemble/test_ensemble.py -> build/lib.linux-x86_64-cpython-312/prody/tests/ensemble copying prody/tests/ensemble/test_conformation.py -> build/lib.linux-x86_64-cpython-312/prody/tests/ensemble copying prody/tests/ensemble/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/tests/ensemble creating build/lib.linux-x86_64-cpython-312/prody/tests/kdtree copying prody/tests/kdtree/test_kdtree.py -> build/lib.linux-x86_64-cpython-312/prody/tests/kdtree copying prody/tests/kdtree/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/tests/kdtree creating build/lib.linux-x86_64-cpython-312/prody/tests/measure copying prody/tests/measure/test_transform.py -> build/lib.linux-x86_64-cpython-312/prody/tests/measure copying prody/tests/measure/test_measure.py -> build/lib.linux-x86_64-cpython-312/prody/tests/measure copying prody/tests/measure/test_contacts.py -> build/lib.linux-x86_64-cpython-312/prody/tests/measure copying prody/tests/measure/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/tests/measure creating build/lib.linux-x86_64-cpython-312/prody/tests/proteins copying prody/tests/proteins/test_wwpdb.py -> build/lib.linux-x86_64-cpython-312/prody/tests/proteins copying prody/tests/proteins/test_pdbfile.py -> build/lib.linux-x86_64-cpython-312/prody/tests/proteins copying prody/tests/proteins/test_localpdb.py -> build/lib.linux-x86_64-cpython-312/prody/tests/proteins copying prody/tests/proteins/test_header.py -> build/lib.linux-x86_64-cpython-312/prody/tests/proteins copying prody/tests/proteins/test_dssp.py -> build/lib.linux-x86_64-cpython-312/prody/tests/proteins copying prody/tests/proteins/test_ciffile.py -> build/lib.linux-x86_64-cpython-312/prody/tests/proteins copying prody/tests/proteins/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/tests/proteins creating build/lib.linux-x86_64-cpython-312/prody/tests/sequence copying prody/tests/sequence/test_sequence.py -> build/lib.linux-x86_64-cpython-312/prody/tests/sequence copying prody/tests/sequence/test_msafile.py -> build/lib.linux-x86_64-cpython-312/prody/tests/sequence copying prody/tests/sequence/test_msa.py -> build/lib.linux-x86_64-cpython-312/prody/tests/sequence copying prody/tests/sequence/test_analysis.py -> build/lib.linux-x86_64-cpython-312/prody/tests/sequence copying prody/tests/sequence/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/tests/sequence creating build/lib.linux-x86_64-cpython-312/prody/tests/trajectory copying prody/tests/trajectory/test_frame.py -> build/lib.linux-x86_64-cpython-312/prody/tests/trajectory copying prody/tests/trajectory/test_dcdfile.py -> build/lib.linux-x86_64-cpython-312/prody/tests/trajectory copying prody/tests/trajectory/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/tests/trajectory creating build/lib.linux-x86_64-cpython-312/prody/tests/utilities copying prody/tests/utilities/test_pathtools.py -> build/lib.linux-x86_64-cpython-312/prody/tests/utilities copying prody/tests/utilities/test_misctools.py -> build/lib.linux-x86_64-cpython-312/prody/tests/utilities copying prody/tests/utilities/test_checkers.py -> build/lib.linux-x86_64-cpython-312/prody/tests/utilities copying prody/tests/utilities/__init__.py -> build/lib.linux-x86_64-cpython-312/prody/tests/utilities creating build/lib.linux-x86_64-cpython-312/prody/utilities/datafiles copying prody/utilities/datafiles/saxs_water.dat -> build/lib.linux-x86_64-cpython-312/prody/utilities/datafiles copying prody/utilities/datafiles/mod_res_map.dat -> build/lib.linux-x86_64-cpython-312/prody/utilities/datafiles copying prody/tests/datafiles/pdbRTER.pdb -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb6fpj_Bb_fixed_solv_ions.pdb -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb4v8r_hex.pdb -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb4v8r_h36.pdb -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb3p3w.pdb -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb3o21.pdb -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb3mht.pdb -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb3hsy.pdb -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb2nwl-opm.pdb -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb2k39_truncated.pdb -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb2k39_ca.pdb -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb2gb1_truncated.pdb -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb1ubi_ca.pdb -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb1ubi.pdb -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_hex.pdb -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_h36.pdb -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb1tw7_step3_charmm2namd.pdb -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb1r19_dssp.pdb -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb1ejg_oneatom.pdb -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pdb1ejg.pdb -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pca2k39_vectors.dat -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pca2k39_evalues.dat -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot_sca.dat -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot_di.dat -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/hit1ubi.dat -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/gnm1ubi_vectors.dat -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/gnm1ubi_evalues.dat -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/exanm2nwl_vectors.dat -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/exanm2nwl_evalues.dat -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/commute1ubi.dat -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/anm1ubi_vectors.dat -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/anm1ubi_evalues.dat -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/rtb2gb1_project.coo -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/rtb2gb1_hessian.coo -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/pca2k39_cov.coo -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/gnm1ubi_kirchhoff.coo -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/exanm2nwl_hessian.coo -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/anm1ubi_hessian.coo -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/dcd2k39_truncated.dcd -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/xmlSTI.xml -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot.sth -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot.slx -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot.fasta -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/msa_3hsyA_3o21A.fasta -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/mmcif_6zu5.cif -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles copying prody/tests/datafiles/mmcif_6yfy.cif -> build/lib.linux-x86_64-cpython-312/prody/tests/datafiles running build_ext building 'prody.dynamics.rtbtools' extension creating build/temp.linux-x86_64-cpython-312 creating build/temp.linux-x86_64-cpython-312/prody creating build/temp.linux-x86_64-cpython-312/prody/dynamics gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/python3.12 -c prody/dynamics/rtbtools.c -o build/temp.linux-x86_64-cpython-312/prody/dynamics/rtbtools.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-312/prody/dynamics/rtbtools.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-312/prody/dynamics/rtbtools.cpython-312-x86_64-linux-gnu.so building 'prody.dynamics.smtools' extension gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/python3.12 -c prody/dynamics/smtools.c -o build/temp.linux-x86_64-cpython-312/prody/dynamics/smtools.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-312/prody/dynamics/smtools.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-312/prody/dynamics/smtools.cpython-312-x86_64-linux-gnu.so building 'prody.sequence.msatools' extension creating build/temp.linux-x86_64-cpython-312/prody/sequence gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/python3.12 -c prody/sequence/msatools.c -o build/temp.linux-x86_64-cpython-312/prody/sequence/msatools.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-312/prody/sequence/msatools.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-312/prody/sequence/msatools.cpython-312-x86_64-linux-gnu.so building 'prody.sequence.msaio' extension gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/python3.12 -c prody/sequence/msaio.c -o build/temp.linux-x86_64-cpython-312/prody/sequence/msaio.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-312/prody/sequence/msaio.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-312/prody/sequence/msaio.cpython-312-x86_64-linux-gnu.so building 'prody.sequence.seqtools' extension gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/python3.12 -c prody/sequence/seqtools.c -o build/temp.linux-x86_64-cpython-312/prody/sequence/seqtools.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-312/prody/sequence/seqtools.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-312/prody/sequence/seqtools.cpython-312-x86_64-linux-gnu.so building 'prody.kdtree._CKDTree' extension creating build/temp.linux-x86_64-cpython-312/prody/kdtree gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/python3.12 -c prody/kdtree/KDTree.c -o build/temp.linux-x86_64-cpython-312/prody/kdtree/KDTree.o gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/python3.12 -c prody/kdtree/KDTreemodule.c -o build/temp.linux-x86_64-cpython-312/prody/kdtree/KDTreemodule.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-312/prody/kdtree/KDTree.o build/temp.linux-x86_64-cpython-312/prody/kdtree/KDTreemodule.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-312/prody/kdtree/_CKDTree.cpython-312-x86_64-linux-gnu.so building 'prody.proteins.ccealign' extension creating build/temp.linux-x86_64-cpython-312/prody/proteins creating build/temp.linux-x86_64-cpython-312/prody/proteins/ccealign gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -Iprody/utilities/tnt -I/usr/include/python3.12 -c prody/proteins/ccealign/ccealignmodule.cpp -o build/temp.linux-x86_64-cpython-312/prody/proteins/ccealign/ccealignmodule.o cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-int’ is not valid for C++ In file included from prody/utilities/tnt/tnt.h:41, from prody/proteins/ccealign/ccealignmodule.h:43, from prody/proteins/ccealign/ccealignmodule.cpp:38: In member function ‘TNT::Array1D::set_(double*, double*, double const&)’, inlined from ‘TNT::Array1D::Array1D(int, double const&)’ at prody/utilities/tnt/tnt_array1d.h:118:6, inlined from ‘findBest(cePoint*, cePoint*, afp**, int, int, int)’ at prody/proteins/ccealign/ccealignmodule.cpp:630:26: prody/utilities/tnt/tnt_array1d.h:260:20: warning: ‘memset’ specified bound between 18446744056529682432 and 18446744073709551608 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 260 | *p = a; | ~~~^~~ g++ -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-312/prody/proteins/ccealign/ccealignmodule.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-312/prody/proteins/ccealign.cpython-312-x86_64-linux-gnu.so In member function ‘set_’, inlined from ‘__ct ’ at prody/utilities/tnt/tnt_array1d.h:118:6, inlined from ‘findBest’ at prody/proteins/ccealign/ccealignmodule.cpp:630:26: prody/utilities/tnt/tnt_array1d.h:260:20: warning: ‘__builtin_memset’ specified bound between 18446744056529682432 and 18446744073709551608 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 260 | *p = a; | ^ + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.CAZglK + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64 ++ dirname /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd ProDy-2.4.1 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + /usr/bin/python3 setup.py install -O1 --skip-build --root /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64 --prefix /usr running install /usr/lib/python3.12/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. Follow the current Python packaging guidelines when building Python RPM packages. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html and https://docs.fedoraproject.org/en-US/packaging-guidelines/Python/ for details. ******************************************************************************** !! self.initialize_options() running install_lib creating /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr creating /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64 creating /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12 creating /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages creating /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody creating /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests creating /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/utilities copying build/lib.linux-x86_64-cpython-312/prody/tests/utilities/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/utilities copying build/lib.linux-x86_64-cpython-312/prody/tests/utilities/test_checkers.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/utilities copying build/lib.linux-x86_64-cpython-312/prody/tests/utilities/test_misctools.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/utilities copying build/lib.linux-x86_64-cpython-312/prody/tests/utilities/test_pathtools.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/utilities creating /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/trajectory copying build/lib.linux-x86_64-cpython-312/prody/tests/trajectory/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/trajectory copying build/lib.linux-x86_64-cpython-312/prody/tests/trajectory/test_dcdfile.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/trajectory copying build/lib.linux-x86_64-cpython-312/prody/tests/trajectory/test_frame.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/trajectory creating /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/sequence copying build/lib.linux-x86_64-cpython-312/prody/tests/sequence/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/sequence copying build/lib.linux-x86_64-cpython-312/prody/tests/sequence/test_analysis.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/sequence copying build/lib.linux-x86_64-cpython-312/prody/tests/sequence/test_msa.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/sequence copying build/lib.linux-x86_64-cpython-312/prody/tests/sequence/test_msafile.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/sequence copying build/lib.linux-x86_64-cpython-312/prody/tests/sequence/test_sequence.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/sequence creating /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/proteins copying build/lib.linux-x86_64-cpython-312/prody/tests/proteins/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/proteins copying build/lib.linux-x86_64-cpython-312/prody/tests/proteins/test_ciffile.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/proteins copying build/lib.linux-x86_64-cpython-312/prody/tests/proteins/test_dssp.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/proteins copying build/lib.linux-x86_64-cpython-312/prody/tests/proteins/test_header.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/proteins copying build/lib.linux-x86_64-cpython-312/prody/tests/proteins/test_localpdb.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/proteins copying build/lib.linux-x86_64-cpython-312/prody/tests/proteins/test_pdbfile.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/proteins copying build/lib.linux-x86_64-cpython-312/prody/tests/proteins/test_wwpdb.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/proteins creating /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/measure copying build/lib.linux-x86_64-cpython-312/prody/tests/measure/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/measure copying build/lib.linux-x86_64-cpython-312/prody/tests/measure/test_contacts.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/measure copying build/lib.linux-x86_64-cpython-312/prody/tests/measure/test_measure.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/measure copying build/lib.linux-x86_64-cpython-312/prody/tests/measure/test_transform.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/measure creating /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/kdtree copying build/lib.linux-x86_64-cpython-312/prody/tests/kdtree/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/kdtree copying build/lib.linux-x86_64-cpython-312/prody/tests/kdtree/test_kdtree.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/kdtree creating /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/ensemble copying build/lib.linux-x86_64-cpython-312/prody/tests/ensemble/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/ensemble copying build/lib.linux-x86_64-cpython-312/prody/tests/ensemble/test_conformation.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/ensemble copying build/lib.linux-x86_64-cpython-312/prody/tests/ensemble/test_ensemble.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/ensemble copying build/lib.linux-x86_64-cpython-312/prody/tests/ensemble/test_functions.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/ensemble copying build/lib.linux-x86_64-cpython-312/prody/tests/ensemble/test_pdbensemble.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/ensemble creating /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/dynamics copying build/lib.linux-x86_64-cpython-312/prody/tests/dynamics/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/dynamics copying build/lib.linux-x86_64-cpython-312/prody/tests/dynamics/test_editing.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/dynamics copying build/lib.linux-x86_64-cpython-312/prody/tests/dynamics/test_enms.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/dynamics copying build/lib.linux-x86_64-cpython-312/prody/tests/dynamics/test_pca.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/dynamics copying build/lib.linux-x86_64-cpython-312/prody/tests/dynamics/test_signature.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/dynamics creating /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/mmcif_6yfy.cif -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/mmcif_6zu5.cif -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/msa_3hsyA_3o21A.fasta -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/msa_Cys_knot.fasta -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/msa_Cys_knot.slx -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/msa_Cys_knot.sth -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/xmlSTI.xml -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/dcd2k39_truncated.dcd -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/anm1ubi_hessian.coo -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/exanm2nwl_hessian.coo -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/gnm1ubi_kirchhoff.coo -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/pca2k39_cov.coo -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/rtb2gb1_hessian.coo -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/rtb2gb1_project.coo -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/anm1ubi_evalues.dat -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/anm1ubi_vectors.dat -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/commute1ubi.dat -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/exanm2nwl_evalues.dat -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/exanm2nwl_vectors.dat -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/gnm1ubi_evalues.dat -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/gnm1ubi_vectors.dat -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/hit1ubi.dat -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/msa_Cys_knot_di.dat -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/msa_Cys_knot_sca.dat -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/pca2k39_evalues.dat -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/pca2k39_vectors.dat -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/pdb1ejg.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/pdb1ejg_oneatom.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/pdb1r19_dssp.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/pdb1tw7_step3_charmm2namd.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_h36.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_hex.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/pdb1ubi.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/pdb1ubi_ca.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/pdb2gb1_truncated.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/pdb2k39_ca.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/pdb2k39_truncated.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/pdb2nwl-opm.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/pdb3hsy.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/pdb3mht.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/pdb3o21.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/pdb3p3w.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/pdb4v8r_h36.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/pdb4v8r_hex.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/pdb6fpj_Bb_fixed_solv_ions.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/pdbRTER.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-312/prody/tests/datafiles/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles creating /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/atomic copying build/lib.linux-x86_64-cpython-312/prody/tests/atomic/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/atomic copying build/lib.linux-x86_64-cpython-312/prody/tests/atomic/test_atomic.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/atomic copying build/lib.linux-x86_64-cpython-312/prody/tests/atomic/test_atommap.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/atomic copying build/lib.linux-x86_64-cpython-312/prody/tests/atomic/test_fragment.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/atomic copying build/lib.linux-x86_64-cpython-312/prody/tests/atomic/test_hierview.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/atomic copying build/lib.linux-x86_64-cpython-312/prody/tests/atomic/test_select.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/atomic copying build/lib.linux-x86_64-cpython-312/prody/tests/atomic/test_subset.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/atomic creating /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/apps copying build/lib.linux-x86_64-cpython-312/prody/tests/apps/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/apps copying build/lib.linux-x86_64-cpython-312/prody/tests/apps/test_prody_anm.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/apps copying build/lib.linux-x86_64-cpython-312/prody/tests/apps/test_prody_catdcd.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/apps copying build/lib.linux-x86_64-cpython-312/prody/tests/apps/test_prody_examples.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/apps copying build/lib.linux-x86_64-cpython-312/prody/tests/apps/test_prody_gnm.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/apps copying build/lib.linux-x86_64-cpython-312/prody/tests/apps/test_prody_pca.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/apps copying build/lib.linux-x86_64-cpython-312/prody/tests/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests creating /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps creating /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps copying build/lib.linux-x86_64-cpython-312/prody/apps/evol_apps/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps copying build/lib.linux-x86_64-cpython-312/prody/apps/evol_apps/evol_coevol.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps copying build/lib.linux-x86_64-cpython-312/prody/apps/evol_apps/evol_conserv.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps copying build/lib.linux-x86_64-cpython-312/prody/apps/evol_apps/evol_fetch.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps copying build/lib.linux-x86_64-cpython-312/prody/apps/evol_apps/evol_filter.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps copying build/lib.linux-x86_64-cpython-312/prody/apps/evol_apps/evol_merge.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps copying build/lib.linux-x86_64-cpython-312/prody/apps/evol_apps/evol_occupancy.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps copying build/lib.linux-x86_64-cpython-312/prody/apps/evol_apps/evol_rankorder.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps copying build/lib.linux-x86_64-cpython-312/prody/apps/evol_apps/evol_refine.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps copying build/lib.linux-x86_64-cpython-312/prody/apps/evol_apps/evol_search.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps creating /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps copying build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps copying build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps/nmaoptions.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps copying build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps/prody_align.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps copying build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps/prody_anm.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps copying build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps/prody_biomol.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps copying build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps/prody_blast.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps copying build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps/prody_catdcd.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps copying build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps/prody_clustenm.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps copying build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps/prody_contacts.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps copying build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps/prody_eda.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps copying build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps/prody_energy.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps copying build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps/prody_fetch.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps copying build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps/prody_gnm.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps copying build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps/prody_pca.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps copying build/lib.linux-x86_64-cpython-312/prody/apps/prody_apps/prody_select.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps copying build/lib.linux-x86_64-cpython-312/prody/apps/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps copying build/lib.linux-x86_64-cpython-312/prody/apps/apptools.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps creating /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/utilities creating /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/utilities/datafiles copying build/lib.linux-x86_64-cpython-312/prody/utilities/datafiles/mod_res_map.dat -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/utilities/datafiles copying build/lib.linux-x86_64-cpython-312/prody/utilities/datafiles/saxs_water.dat -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/utilities/datafiles copying build/lib.linux-x86_64-cpython-312/prody/utilities/TreeConstruction.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/utilities copying build/lib.linux-x86_64-cpython-312/prody/utilities/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/utilities copying build/lib.linux-x86_64-cpython-312/prody/utilities/catchall.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/utilities copying build/lib.linux-x86_64-cpython-312/prody/utilities/checkers.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/utilities copying build/lib.linux-x86_64-cpython-312/prody/utilities/doctools.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/utilities copying build/lib.linux-x86_64-cpython-312/prody/utilities/drawtools.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/utilities copying build/lib.linux-x86_64-cpython-312/prody/utilities/eigtools.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/utilities copying build/lib.linux-x86_64-cpython-312/prody/utilities/laptools.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/utilities copying build/lib.linux-x86_64-cpython-312/prody/utilities/legacy.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/utilities copying build/lib.linux-x86_64-cpython-312/prody/utilities/logger.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/utilities copying build/lib.linux-x86_64-cpython-312/prody/utilities/misctools.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/utilities copying build/lib.linux-x86_64-cpython-312/prody/utilities/pathtools.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/utilities copying build/lib.linux-x86_64-cpython-312/prody/utilities/seqtools.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/utilities copying build/lib.linux-x86_64-cpython-312/prody/utilities/settings.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/utilities creating /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/domain_decomposition copying build/lib.linux-x86_64-cpython-312/prody/domain_decomposition/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/domain_decomposition copying build/lib.linux-x86_64-cpython-312/prody/domain_decomposition/spectrus.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/domain_decomposition creating /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/compounds copying build/lib.linux-x86_64-cpython-312/prody/compounds/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/compounds copying build/lib.linux-x86_64-cpython-312/prody/compounds/bird.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/compounds copying build/lib.linux-x86_64-cpython-312/prody/compounds/ccd.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/compounds copying build/lib.linux-x86_64-cpython-312/prody/compounds/functions.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/compounds copying build/lib.linux-x86_64-cpython-312/prody/compounds/pdbligands.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/compounds creating /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/chromatin copying build/lib.linux-x86_64-cpython-312/prody/chromatin/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/chromatin copying build/lib.linux-x86_64-cpython-312/prody/chromatin/cluster.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/chromatin copying build/lib.linux-x86_64-cpython-312/prody/chromatin/functions.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/chromatin copying build/lib.linux-x86_64-cpython-312/prody/chromatin/hic.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/chromatin copying build/lib.linux-x86_64-cpython-312/prody/chromatin/norm.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/chromatin copying build/lib.linux-x86_64-cpython-312/prody/chromatin/straw.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/chromatin creating /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/trajectory copying build/lib.linux-x86_64-cpython-312/prody/trajectory/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/trajectory copying build/lib.linux-x86_64-cpython-312/prody/trajectory/dcdfile.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/trajectory copying build/lib.linux-x86_64-cpython-312/prody/trajectory/frame.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/trajectory copying build/lib.linux-x86_64-cpython-312/prody/trajectory/psffile.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/trajectory copying build/lib.linux-x86_64-cpython-312/prody/trajectory/trajbase.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/trajectory copying build/lib.linux-x86_64-cpython-312/prody/trajectory/trajectory.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/trajectory copying build/lib.linux-x86_64-cpython-312/prody/trajectory/trajfile.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/trajectory creating /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/sequence copying build/lib.linux-x86_64-cpython-312/prody/sequence/seqtools.cpython-312-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/sequence copying build/lib.linux-x86_64-cpython-312/prody/sequence/msaio.cpython-312-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/sequence copying build/lib.linux-x86_64-cpython-312/prody/sequence/msatools.cpython-312-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/sequence copying build/lib.linux-x86_64-cpython-312/prody/sequence/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/sequence copying build/lib.linux-x86_64-cpython-312/prody/sequence/analysis.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/sequence copying build/lib.linux-x86_64-cpython-312/prody/sequence/msa.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/sequence copying build/lib.linux-x86_64-cpython-312/prody/sequence/msafile.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/sequence copying build/lib.linux-x86_64-cpython-312/prody/sequence/plotting.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/sequence copying build/lib.linux-x86_64-cpython-312/prody/sequence/sequence.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/sequence creating /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-312/prody/proteins/ccealign.cpython-312-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-312/prody/proteins/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-312/prody/proteins/blastpdb.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-312/prody/proteins/ciffile.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-312/prody/proteins/cifheader.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-312/prody/proteins/compare.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-312/prody/proteins/dssp.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-312/prody/proteins/emdfile.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-312/prody/proteins/fixer.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-312/prody/proteins/functions.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-312/prody/proteins/header.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-312/prody/proteins/localpdb.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-312/prody/proteins/pdbclusters.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-312/prody/proteins/pdbfile.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-312/prody/proteins/starfile.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-312/prody/proteins/stride.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-312/prody/proteins/waterbridges.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-312/prody/proteins/wwpdb.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/proteins creating /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/measure copying build/lib.linux-x86_64-cpython-312/prody/measure/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/measure copying build/lib.linux-x86_64-cpython-312/prody/measure/contacts.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/measure copying build/lib.linux-x86_64-cpython-312/prody/measure/measure.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/measure copying build/lib.linux-x86_64-cpython-312/prody/measure/transform.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/measure creating /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/kdtree copying build/lib.linux-x86_64-cpython-312/prody/kdtree/_CKDTree.cpython-312-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/kdtree copying build/lib.linux-x86_64-cpython-312/prody/kdtree/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/kdtree copying build/lib.linux-x86_64-cpython-312/prody/kdtree/kdtree.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/kdtree creating /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/ensemble copying build/lib.linux-x86_64-cpython-312/prody/ensemble/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/ensemble copying build/lib.linux-x86_64-cpython-312/prody/ensemble/conformation.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/ensemble copying build/lib.linux-x86_64-cpython-312/prody/ensemble/ensemble.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/ensemble copying build/lib.linux-x86_64-cpython-312/prody/ensemble/functions.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/ensemble copying build/lib.linux-x86_64-cpython-312/prody/ensemble/pdbensemble.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/ensemble creating /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/smtools.cpython-312-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/rtbtools.cpython-312-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/adaptive.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/analysis.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/anm.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/bbenm.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/bildfile.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/clustenm.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/compare.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/editing.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/entropy.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/essa.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/exanm.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/exgnm.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/functions.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/gamma.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/gnm.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/heatmapper.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/imanm.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/mechstiff.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/mode.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/modeset.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/nma.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/nmdfile.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/pca.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/perturb.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/plotting.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/rtb.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/sampling.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/signature.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-312/prody/dynamics/vmdfile.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics creating /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/database copying build/lib.linux-x86_64-cpython-312/prody/database/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/database copying build/lib.linux-x86_64-cpython-312/prody/database/cath.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/database copying build/lib.linux-x86_64-cpython-312/prody/database/dali.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/database copying build/lib.linux-x86_64-cpython-312/prody/database/goa.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/database copying build/lib.linux-x86_64-cpython-312/prody/database/pfam.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/database copying build/lib.linux-x86_64-cpython-312/prody/database/quartataweb.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/database copying build/lib.linux-x86_64-cpython-312/prody/database/uniprot.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/database creating /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-312/prody/atomic/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-312/prody/atomic/acceptor.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-312/prody/atomic/angle.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-312/prody/atomic/atom.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-312/prody/atomic/atomgroup.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-312/prody/atomic/atomic.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-312/prody/atomic/atommap.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-312/prody/atomic/bond.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-312/prody/atomic/chain.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-312/prody/atomic/crossterm.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-312/prody/atomic/dihedral.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-312/prody/atomic/donor.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-312/prody/atomic/fields.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-312/prody/atomic/flags.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-312/prody/atomic/functions.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-312/prody/atomic/hierview.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-312/prody/atomic/improper.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-312/prody/atomic/nbexclusion.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-312/prody/atomic/pointer.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-312/prody/atomic/residue.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-312/prody/atomic/segment.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-312/prody/atomic/select.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-312/prody/atomic/selection.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-312/prody/atomic/subset.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-312/prody/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/utilities/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/utilities/test_checkers.py to test_checkers.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/utilities/test_misctools.py to test_misctools.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/utilities/test_pathtools.py to test_pathtools.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/trajectory/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/trajectory/test_dcdfile.py to test_dcdfile.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/trajectory/test_frame.py to test_frame.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/sequence/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/sequence/test_analysis.py to test_analysis.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/sequence/test_msa.py to test_msa.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/sequence/test_msafile.py to test_msafile.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/sequence/test_sequence.py to test_sequence.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/proteins/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/proteins/test_ciffile.py to test_ciffile.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/proteins/test_dssp.py to test_dssp.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/proteins/test_header.py to test_header.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/proteins/test_localpdb.py to test_localpdb.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/proteins/test_pdbfile.py to test_pdbfile.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/proteins/test_wwpdb.py to test_wwpdb.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/measure/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/measure/test_contacts.py to test_contacts.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/measure/test_measure.py to test_measure.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/measure/test_transform.py to test_transform.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/kdtree/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/kdtree/test_kdtree.py to test_kdtree.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/ensemble/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/ensemble/test_conformation.py to test_conformation.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/ensemble/test_ensemble.py to test_ensemble.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/ensemble/test_functions.py to test_functions.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/ensemble/test_pdbensemble.py to test_pdbensemble.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/dynamics/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/dynamics/test_editing.py to test_editing.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/dynamics/test_enms.py to test_enms.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/dynamics/test_pca.py to test_pca.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/dynamics/test_signature.py to test_signature.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/datafiles/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/atomic/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/atomic/test_atomic.py to test_atomic.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/atomic/test_atommap.py to test_atommap.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/atomic/test_fragment.py to test_fragment.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/atomic/test_hierview.py to test_hierview.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/atomic/test_select.py to test_select.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/atomic/test_subset.py to test_subset.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/apps/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/apps/test_prody_anm.py to test_prody_anm.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/apps/test_prody_catdcd.py to test_prody_catdcd.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/apps/test_prody_examples.py to test_prody_examples.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/apps/test_prody_gnm.py to test_prody_gnm.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/apps/test_prody_pca.py to test_prody_pca.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/tests/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps/evol_coevol.py to evol_coevol.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps/evol_conserv.py to evol_conserv.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps/evol_fetch.py to evol_fetch.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps/evol_filter.py to evol_filter.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps/evol_merge.py to evol_merge.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps/evol_occupancy.py to evol_occupancy.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps/evol_rankorder.py to evol_rankorder.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps/evol_refine.py to evol_refine.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/evol_apps/evol_search.py to evol_search.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps/nmaoptions.py to nmaoptions.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps/prody_align.py to prody_align.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps/prody_anm.py to prody_anm.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps/prody_biomol.py to prody_biomol.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps/prody_blast.py to prody_blast.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps/prody_catdcd.py to prody_catdcd.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps/prody_clustenm.py to prody_clustenm.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps/prody_contacts.py to prody_contacts.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps/prody_eda.py to prody_eda.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps/prody_energy.py to prody_energy.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps/prody_fetch.py to prody_fetch.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps/prody_gnm.py to prody_gnm.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps/prody_pca.py to prody_pca.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/prody_apps/prody_select.py to prody_select.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/apps/apptools.py to apptools.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/utilities/TreeConstruction.py to TreeConstruction.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/utilities/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/utilities/catchall.py to catchall.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/utilities/checkers.py to checkers.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/utilities/doctools.py to doctools.cpython-312.pyc /usr/lib64/python3.12/site-packages/prody/utilities/doctools.py:48: SyntaxWarning: invalid escape sequence '\i' byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/utilities/drawtools.py to drawtools.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/utilities/eigtools.py to eigtools.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/utilities/laptools.py to laptools.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/utilities/legacy.py to legacy.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/utilities/logger.py to logger.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/utilities/misctools.py to misctools.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/utilities/pathtools.py to pathtools.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/utilities/seqtools.py to seqtools.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/utilities/settings.py to settings.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/domain_decomposition/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/domain_decomposition/spectrus.py to spectrus.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/compounds/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/compounds/bird.py to bird.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/compounds/ccd.py to ccd.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/compounds/functions.py to functions.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/compounds/pdbligands.py to pdbligands.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/chromatin/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/chromatin/cluster.py to cluster.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/chromatin/functions.py to functions.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/chromatin/hic.py to hic.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/chromatin/norm.py to norm.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/chromatin/straw.py to straw.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/trajectory/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/trajectory/dcdfile.py to dcdfile.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/trajectory/frame.py to frame.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/trajectory/psffile.py to psffile.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/trajectory/trajbase.py to trajbase.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/trajectory/trajectory.py to trajectory.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/trajectory/trajfile.py to trajfile.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/sequence/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/sequence/analysis.py to analysis.cpython-312.pyc /usr/lib64/python3.12/site-packages/prody/sequence/analysis.py:169: SyntaxWarning: invalid escape sequence '\{' byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/sequence/msa.py to msa.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/sequence/msafile.py to msafile.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/sequence/plotting.py to plotting.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/sequence/sequence.py to sequence.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/proteins/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/proteins/blastpdb.py to blastpdb.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/proteins/ciffile.py to ciffile.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/proteins/cifheader.py to cifheader.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/proteins/compare.py to compare.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/proteins/dssp.py to dssp.cpython-312.pyc /usr/lib64/python3.12/site-packages/prody/proteins/dssp.py:78: SyntaxWarning: invalid escape sequence '\*' byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/proteins/emdfile.py to emdfile.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/proteins/fixer.py to fixer.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/proteins/functions.py to functions.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/proteins/header.py to header.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/proteins/localpdb.py to localpdb.cpython-312.pyc /usr/lib64/python3.12/site-packages/prody/proteins/localpdb.py:438: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.12/site-packages/prody/proteins/localpdb.py:440: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.12/site-packages/prody/proteins/localpdb.py:442: SyntaxWarning: invalid escape sequence '\.' byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/proteins/pdbclusters.py to pdbclusters.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/proteins/pdbfile.py to pdbfile.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/proteins/starfile.py to starfile.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/proteins/stride.py to stride.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/proteins/waterbridges.py to waterbridges.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/proteins/wwpdb.py to wwpdb.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/measure/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/measure/contacts.py to contacts.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/measure/measure.py to measure.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/measure/transform.py to transform.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/kdtree/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/kdtree/kdtree.py to kdtree.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/ensemble/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/ensemble/conformation.py to conformation.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/ensemble/ensemble.py to ensemble.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/ensemble/functions.py to functions.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/ensemble/pdbensemble.py to pdbensemble.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/adaptive.py to adaptive.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/analysis.py to analysis.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/anm.py to anm.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/bbenm.py to bbenm.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/bildfile.py to bildfile.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/clustenm.py to clustenm.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/compare.py to compare.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/editing.py to editing.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/entropy.py to entropy.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/essa.py to essa.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/exanm.py to exanm.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/exgnm.py to exgnm.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/functions.py to functions.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/gamma.py to gamma.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/gnm.py to gnm.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/heatmapper.py to heatmapper.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/imanm.py to imanm.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/mechstiff.py to mechstiff.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/mode.py to mode.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/modeset.py to modeset.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/nma.py to nma.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/nmdfile.py to nmdfile.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/pca.py to pca.cpython-312.pyc /usr/lib64/python3.12/site-packages/prody/dynamics/pca.py:59: SyntaxWarning: invalid escape sequence '\_' byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/perturb.py to perturb.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/plotting.py to plotting.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/rtb.py to rtb.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/sampling.py to sampling.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/signature.py to signature.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/dynamics/vmdfile.py to vmdfile.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/database/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/database/cath.py to cath.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/database/dali.py to dali.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/database/goa.py to goa.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/database/pfam.py to pfam.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/database/quartataweb.py to quartataweb.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/database/uniprot.py to uniprot.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic/acceptor.py to acceptor.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic/angle.py to angle.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic/atom.py to atom.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic/atomgroup.py to atomgroup.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic/atomic.py to atomic.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic/atommap.py to atommap.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic/bond.py to bond.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic/chain.py to chain.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic/crossterm.py to crossterm.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic/dihedral.py to dihedral.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic/donor.py to donor.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic/fields.py to fields.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic/flags.py to flags.cpython-312.pyc /usr/lib64/python3.12/site-packages/prody/atomic/flags.py:463: SyntaxWarning: invalid escape sequence '\ ' byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic/functions.py to functions.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic/hierview.py to hierview.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic/improper.py to improper.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic/nbexclusion.py to nbexclusion.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic/pointer.py to pointer.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic/residue.py to residue.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic/segment.py to segment.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic/select.py to select.cpython-312.pyc /usr/lib64/python3.12/site-packages/prody/atomic/select.py:2: SyntaxWarning: invalid escape sequence '\|' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:719: SyntaxWarning: invalid escape sequence '\w' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:738: SyntaxWarning: invalid escape sequence '\w' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:757: SyntaxWarning: invalid escape sequence '\d' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:758: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:761: SyntaxWarning: invalid escape sequence '\ ' byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic/selection.py to selection.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/atomic/subset.py to subset.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/prody/__init__.py to __init__.cpython-312.pyc writing byte-compilation script '/tmp/tmp0_ti3ycx.py' /usr/bin/python3 /tmp/tmp0_ti3ycx.py /usr/lib64/python3.12/site-packages/prody/utilities/doctools.py:48: SyntaxWarning: invalid escape sequence '\i' /usr/lib64/python3.12/site-packages/prody/sequence/analysis.py:169: SyntaxWarning: invalid escape sequence '\{' /usr/lib64/python3.12/site-packages/prody/proteins/dssp.py:78: SyntaxWarning: invalid escape sequence '\*' /usr/lib64/python3.12/site-packages/prody/proteins/localpdb.py:438: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.12/site-packages/prody/proteins/localpdb.py:440: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.12/site-packages/prody/proteins/localpdb.py:442: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.12/site-packages/prody/dynamics/pca.py:59: SyntaxWarning: invalid escape sequence '\_' /usr/lib64/python3.12/site-packages/prody/atomic/flags.py:463: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:2: SyntaxWarning: invalid escape sequence '\|' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:719: SyntaxWarning: invalid escape sequence '\w' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:738: SyntaxWarning: invalid escape sequence '\w' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:757: SyntaxWarning: invalid escape sequence '\d' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:758: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:761: SyntaxWarning: invalid escape sequence '\ ' removing /tmp/tmp0_ti3ycx.py running install_egg_info running egg_info creating ProDy.egg-info writing ProDy.egg-info/PKG-INFO writing dependency_links to ProDy.egg-info/dependency_links.txt writing entry points to ProDy.egg-info/entry_points.txt writing requirements to ProDy.egg-info/requires.txt writing top-level names to ProDy.egg-info/top_level.txt writing manifest file 'ProDy.egg-info/SOURCES.txt' reading manifest file 'ProDy.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'prody/*/*/*.c' warning: no files found matching 'prody/*/*.cpp' warning: no files found matching 'prody/utilities/datafiles/*.txt' adding license file 'LICENSE.rst' writing manifest file 'ProDy.egg-info/SOURCES.txt' Copying ProDy.egg-info to /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12/site-packages/ProDy-2.4.1-py3.12.egg-info running install_scripts Installing evol script to /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/bin Installing prody script to /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/bin + rm -rfv /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/bin/__pycache__ + mkdir -p /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/bin + rm -f /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/bin/evol /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/bin/prody + cd scripts + cp -pr ./prody ./python3.12-prody + cp -pr ./evol ./python3.12-evol + sed -i '1s=^#!/usr/bin/\(python\|env python\)[0-9.]*=#!/usr/bin/python3=' ./prody ./evol ./python3.12-prody ./python3.12-evol + for i in prody-3.12 + touch -r ./python3.12-prody prody-3.12 + install -p prody-3.12 /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/bin + install -p ./prody /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/bin + install -p ./python3.12-prody /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/bin + ln -sf /usr/bin/python3.12-prody /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/bin/prody-3.12 + for i in evol-3.12 + touch -r ./python3.12-evol evol-3.12 + install -p evol-3.12 /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/bin + install -p ./evol /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/bin + install -p ./python3.12-evol /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/bin + ln -sf /usr/bin/python3.12-evol /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/bin/evol-3.12 + cd .. + /usr/bin/find-debuginfo -j4 --strict-build-id -m -i --build-id-seed 2.4.1-1.fc40 --unique-debug-suffix -2.4.1-1.fc40.x86_64 --unique-debug-src-base ProDy-2.4.1-1.fc40.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/ProDy-2.4.1 find-debuginfo: starting Extracting debug info from 7 files DWARF-compressing 7 files sepdebugcrcfix: Updated 7 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/ProDy-2.4.1-1.fc40.x86_64 464 blocks find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j4 Bytecompiling .py files below /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib/debug/usr/lib64/python3.12 using python3.12 Bytecompiling .py files below /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/lib64/python3.12 using python3.12 /usr/lib64/python3.12/site-packages/prody/atomic/flags.py:463: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.12/site-packages/prody/atomic/flags.py:463: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:2: SyntaxWarning: invalid escape sequence '\|' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:719: SyntaxWarning: invalid escape sequence '\w' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:738: SyntaxWarning: invalid escape sequence '\w' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:757: SyntaxWarning: invalid escape sequence '\d' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:758: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:761: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:2: SyntaxWarning: invalid escape sequence '\|' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:719: SyntaxWarning: invalid escape sequence '\w' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:738: SyntaxWarning: invalid escape sequence '\w' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:757: SyntaxWarning: invalid escape sequence '\d' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:758: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.12/site-packages/prody/atomic/select.py:761: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.12/site-packages/prody/dynamics/pca.py:59: SyntaxWarning: invalid escape sequence '\_' /usr/lib64/python3.12/site-packages/prody/dynamics/pca.py:59: SyntaxWarning: invalid escape sequence '\_' /usr/lib64/python3.12/site-packages/prody/proteins/dssp.py:78: SyntaxWarning: invalid escape sequence '\*' /usr/lib64/python3.12/site-packages/prody/proteins/dssp.py:78: SyntaxWarning: invalid escape sequence '\*' /usr/lib64/python3.12/site-packages/prody/proteins/localpdb.py:438: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.12/site-packages/prody/proteins/localpdb.py:440: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.12/site-packages/prody/proteins/localpdb.py:442: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.12/site-packages/prody/proteins/localpdb.py:438: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.12/site-packages/prody/proteins/localpdb.py:440: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.12/site-packages/prody/proteins/localpdb.py:442: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.12/site-packages/prody/sequence/analysis.py:169: SyntaxWarning: invalid escape sequence '\{' /usr/lib64/python3.12/site-packages/prody/sequence/analysis.py:169: SyntaxWarning: invalid escape sequence '\{' /usr/lib64/python3.12/site-packages/prody/utilities/doctools.py:48: SyntaxWarning: invalid escape sequence '\i' /usr/lib64/python3.12/site-packages/prody/utilities/doctools.py:48: SyntaxWarning: invalid escape sequence '\i' + /usr/lib/rpm/redhat/brp-python-hardlink Processing files: python3-ProDy-2.4.1-1.fc40.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.w9eboV + umask 022 + cd /builddir/build/BUILD + cd ProDy-2.4.1 + DOCDIR=/builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/share/doc/python3-ProDy + export LC_ALL= + LC_ALL= + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/share/doc/python3-ProDy + cp -pr /builddir/build/BUILD/ProDy-2.4.1/README.rst /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/share/doc/python3-ProDy + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.ngLdib + umask 022 + cd /builddir/build/BUILD + cd ProDy-2.4.1 + LICENSEDIR=/builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/share/licenses/python3-ProDy + export LC_ALL= + LC_ALL= + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/share/licenses/python3-ProDy + cp -pr /builddir/build/BUILD/ProDy-2.4.1/LICENSE.rst /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64/usr/share/licenses/python3-ProDy + RPM_EC=0 ++ jobs -p + exit 0 warning: absolute symlink: /usr/bin/evol-3.12 -> /usr/bin/python3.12-evol warning: absolute symlink: /usr/bin/prody-3.12 -> /usr/bin/python3.12-prody Provides: ProDy = 0:2.4.1-1.fc40 python-ProDy = 2.4.1-1.fc40 python3-ProDy = 2.4.1-1.fc40 python3-ProDy(x86-64) = 2.4.1-1.fc40 python3.12-ProDy = 2.4.1-1.fc40 python3.12dist(prody) = 2.4.1 python3dist(prody) = 2.4.1 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/python3 python(abi) = 3.12 python3.12dist(biopython) python3.12dist(numpy) >= 1.10 python3.12dist(pyparsing) python3.12dist(scipy) python3.12dist(setuptools) Obsoletes: python-ProDy < 2.4.1-1.fc40 Processing files: ProDy-debugsource-2.4.1-1.fc40.x86_64 Provides: ProDy-debugsource = 2.4.1-1.fc40 ProDy-debugsource(x86-64) = 2.4.1-1.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: python3-ProDy-debuginfo-2.4.1-1.fc40.x86_64 Provides: debuginfo(build-id) = 3160544f3b33dd399ca403f2080585c4ca5dbe58 debuginfo(build-id) = 66bdbc153de9c1d90bfd75053ed90bc02a111beb debuginfo(build-id) = 7ea8ef87aed55bf75f71e47b15db92a7e6b7da21 debuginfo(build-id) = 884b195336e4cdb5e0c6b1dd72f2f235ec893b62 debuginfo(build-id) = a25c5d1aed5bbf55c4e61f67bbf917e5f84d865b debuginfo(build-id) = e32907dbdf946e1b4ccd25dd6ae750a97d95b7a5 debuginfo(build-id) = f456f156f5d4f5d42d168cd3b80fbb53fdb0ea18 python-ProDy-debuginfo = 2.4.1-1.fc40 python3-ProDy-debuginfo = 2.4.1-1.fc40 python3-ProDy-debuginfo(x86-64) = 2.4.1-1.fc40 python3.12-ProDy-debuginfo = 2.4.1-1.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: ProDy-debugsource(x86-64) = 2.4.1-1.fc40 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64 Wrote: /builddir/build/RPMS/ProDy-debugsource-2.4.1-1.fc40.x86_64.rpm Wrote: /builddir/build/RPMS/python3-ProDy-debuginfo-2.4.1-1.fc40.x86_64.rpm Wrote: /builddir/build/RPMS/python3-ProDy-2.4.1-1.fc40.x86_64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.hh6VnB + umask 022 + cd /builddir/build/BUILD + cd ProDy-2.4.1 + /usr/bin/rm -rf /builddir/build/BUILDROOT/ProDy-2.4.1-1.fc40.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.b7BX3n + umask 022 + cd /builddir/build/BUILD + rm -rf /builddir/build/BUILD/ProDy-2.4.1-SPECPARTS + rm -rf ProDy-2.4.1 ProDy-2.4.1.gemspec + RPM_EC=0 ++ jobs -p + exit 0 RPM build warnings: absolute symlink: /usr/bin/evol-3.12 -> /usr/bin/python3.12-evol absolute symlink: /usr/bin/prody-3.12 -> /usr/bin/python3.12-prody Finish: rpmbuild ProDy-2.4.1-1.fc40.src.rpm Finish: build phase for ProDy-2.4.1-1.fc40.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1700744584.520255/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-x86_64-1700744584.520255/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-x86_64-1700744584.520255/root/var/log/dnf.log INFO: Done(/var/lib/copr-rpmbuild/results/ProDy-2.4.1-1.fc40.src.rpm) Config(child) 1 minutes 11 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "ProDy-debugsource", "epoch": null, "version": "2.4.1", "release": "1.fc40", "arch": "x86_64" }, { "name": "ProDy", "epoch": null, "version": "2.4.1", "release": "1.fc40", "arch": "src" }, { "name": "python3-ProDy-debuginfo", "epoch": null, "version": "2.4.1", "release": "1.fc40", "arch": "x86_64" }, { "name": "python3-ProDy", "epoch": null, "version": "2.4.1", "release": "1.fc40", "arch": "x86_64" } ] } RPMResults finished