Warning: Permanently added '3.82.15.131' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/6684210-fedora-rawhide-x86_64 --chroot fedora-rawhide-x86_64 Version: 0.69 PID: 10702 Logging PID: 10703 Task: {'appstream': False, 'background': False, 'build_id': 6684210, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': '349cb2c604e6446675fc38831b2e60d7e854a586', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/thrnciar/python-requests-5b54aca4/python-pynwb', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'python-pynwb', 'package_version': '2.5.0-3', 'project_dirname': 'python-requests-5b54aca4', 'project_name': 'python-requests-5b54aca4', 'project_owner': 'thrnciar', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/thrnciar/python-requests-5b54aca4/fedora-rawhide-x86_64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}], 'sandbox': 'thrnciar/python-requests-5b54aca4--thrnciar', 'source_json': {}, 'source_type': None, 'submitter': 'thrnciar', 'tags': [], 'task_id': '6684210-fedora-rawhide-x86_64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/thrnciar/python-requests-5b54aca4/python-pynwb /var/lib/copr-rpmbuild/workspace/workdir-kzz2iqw8/python-pynwb --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/thrnciar/python-requests-5b54aca4/python-pynwb', '/var/lib/copr-rpmbuild/workspace/workdir-kzz2iqw8/python-pynwb', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-kzz2iqw8/python-pynwb'... Running: git checkout 349cb2c604e6446675fc38831b2e60d7e854a586 -- cmd: ['git', 'checkout', '349cb2c604e6446675fc38831b2e60d7e854a586', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-kzz2iqw8/python-pynwb rc: 0 stdout: stderr: Note: switching to '349cb2c604e6446675fc38831b2e60d7e854a586'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 349cb2c automatic import of python-pynwb Running: copr-distgit-client sources 100 606k 100 606k 0 0 5238k 0 --:--:-- --:--:-- --:--:-- 5271k INFO: Reading stdout from command: md5sum pynwb-2.5.0.tar.gz /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-kzz2iqw8/python-pynwb/python-pynwb.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-kzz2iqw8/python-pynwb --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1700757302.802967 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.2 starting (python version = 3.11.3, NVR = mock-5.2-1.fc38), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-kzz2iqw8/python-pynwb/python-pynwb.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-kzz2iqw8/python-pynwb --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1700757302.802967 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-kzz2iqw8/python-pynwb/python-pynwb.spec) Config(fedora-rawhide-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 5.2 INFO: Mock Version: 5.2 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1700757302.802967/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using bootstrap image: registry.fedoraproject.org/fedora:rawhide INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide INFO: Copy content of container registry.fedoraproject.org/fedora:rawhide to /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1700757302.802967/root INFO: Checking that registry.fedoraproject.org/fedora:rawhide image matches host's architecture INFO: mounting registry.fedoraproject.org/fedora:rawhide with podman image mount INFO: image registry.fedoraproject.org/fedora:rawhide as /var/lib/containers/storage/overlay/2867afab974f7855400f2f3efe60e26946dde0e813e737eaca38ba651d113485/merged INFO: umounting image registry.fedoraproject.org/fedora:rawhide (/var/lib/containers/storage/overlay/2867afab974f7855400f2f3efe60e26946dde0e813e737eaca38ba651d113485/merged) with podman image umount INFO: Package manager dnf detected and used (fallback) INFO: Bootstrap image not marked ready Start(bootstrap): installing dnf tooling No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 79 MB/s | 5.2 MB 00:00 fedora 53 MB/s | 72 MB 00:01 Last metadata expiration check: 0:00:01 ago on Thu Nov 23 16:35:06 2023. Package python3-dnf-4.18.1-2.fc40.noarch is already installed. Dependencies resolved. ================================================================================ Package Arch Version Repository Size ================================================================================ Installing: python3-dnf-plugins-core noarch 4.4.3-1.fc40 copr_base 302 k Installing dependencies: dbus-libs x86_64 1:1.14.10-1.fc40 fedora 155 k python3-dateutil noarch 1:2.8.2-11.fc40 copr_base 345 k python3-dbus x86_64 1.3.2-4.fc39 fedora 157 k python3-distro noarch 1.8.0-6.fc39 fedora 49 k python3-six noarch 1.16.0-12.fc39 fedora 41 k python3-systemd x86_64 235-5.fc39 fedora 107 k Transaction Summary ================================================================================ Install 7 Packages Total download size: 1.1 M Installed size: 3.6 M Downloading Packages: (1/7): python3-dateutil-2.8.2-11.fc40.noarch.rp 18 MB/s | 345 kB 00:00 (2/7): dbus-libs-1.14.10-1.fc40.x86_64.rpm 7.5 MB/s | 155 kB 00:00 (3/7): python3-dbus-1.3.2-4.fc39.x86_64.rpm 46 MB/s | 157 kB 00:00 (4/7): python3-dnf-plugins-core-4.4.3-1.fc40.no 12 MB/s | 302 kB 00:00 (5/7): python3-distro-1.8.0-6.fc39.noarch.rpm 14 MB/s | 49 kB 00:00 (6/7): python3-six-1.16.0-12.fc39.noarch.rpm 16 MB/s | 41 kB 00:00 (7/7): python3-systemd-235-5.fc39.x86_64.rpm 38 MB/s | 107 kB 00:00 -------------------------------------------------------------------------------- Total 11 MB/s | 1.1 MB 00:00 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Installing : python3-systemd-235-5.fc39.x86_64 1/7 Installing : python3-six-1.16.0-12.fc39.noarch 2/7 Installing : python3-dateutil-1:2.8.2-11.fc40.noarch 3/7 Installing : python3-distro-1.8.0-6.fc39.noarch 4/7 Installing : dbus-libs-1:1.14.10-1.fc40.x86_64 5/7 Installing : python3-dbus-1.3.2-4.fc39.x86_64 6/7 Installing : python3-dnf-plugins-core-4.4.3-1.fc40.noarch 7/7 Running scriptlet: python3-dnf-plugins-core-4.4.3-1.fc40.noarch 7/7 Installed: dbus-libs-1:1.14.10-1.fc40.x86_64 python3-dateutil-1:2.8.2-11.fc40.noarch python3-dbus-1.3.2-4.fc39.x86_64 python3-distro-1.8.0-6.fc39.noarch python3-dnf-plugins-core-4.4.3-1.fc40.noarch python3-six-1.16.0-12.fc39.noarch python3-systemd-235-5.fc39.x86_64 Complete! Finish(bootstrap): installing dnf tooling Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1700757302.802967/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf detected and used (direct choice) Start: installing minimal buildroot with dnf No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 76 kB/s | 1.5 kB 00:00 Copr repository 68 MB/s | 5.2 MB 00:00 fedora 440 kB/s | 20 kB 00:00 Dependencies resolved. ================================================================================ Package Arch Version Repo Size ================================================================================ Installing group/module packages: bash x86_64 5.2.21-2.fc40 fedora 1.8 M bzip2 x86_64 1.0.8-16.fc39 fedora 52 k coreutils x86_64 9.4-1.fc40 fedora 1.1 M cpio x86_64 2.14-5.fc40 fedora 280 k diffutils x86_64 3.10-3.fc39 fedora 398 k fedora-release-common noarch 40-0.20 fedora 20 k findutils x86_64 1:4.9.0-6.fc40 fedora 492 k gawk x86_64 5.2.2-2.fc39 fedora 1.1 M glibc-minimal-langpack x86_64 2.38.9000-22.fc40 fedora 81 k grep x86_64 3.11-5.fc40 fedora 298 k gzip x86_64 1.12-6.fc39 fedora 166 k info x86_64 7.1-1.fc40 fedora 184 k patch x86_64 2.7.6-22.fc39 fedora 125 k redhat-rpm-config noarch 271-1.fc40 fedora 81 k rpm-build x86_64 4.19.0-2.fc40 fedora 79 k sed x86_64 4.8-14.fc39 fedora 306 k shadow-utils x86_64 2:4.14.0-2.fc40 fedora 1.3 M tar x86_64 2:1.35-2.fc40 fedora 864 k unzip x86_64 6.0-62.fc39 fedora 184 k util-linux x86_64 2.39.2-1.fc40 fedora 1.2 M which x86_64 2.21-40.fc39 fedora 42 k xz x86_64 5.4.5-1.fc40 fedora 557 k Installing dependencies: alternatives x86_64 1.25-1.fc39 fedora 39 k ansible-srpm-macros noarch 1-11.fc39 fedora 21 k audit-libs x86_64 3.1.2-5.fc40 fedora 117 k authselect x86_64 1.4.3-1.fc40 fedora 149 k authselect-libs x86_64 1.4.3-1.fc40 fedora 249 k basesystem noarch 11-18.fc39 fedora 7.2 k binutils x86_64 2.41-14.fc40 fedora 6.3 M binutils-gold x86_64 2.41-14.fc40 fedora 797 k bzip2-libs x86_64 1.0.8-16.fc39 fedora 41 k ca-certificates noarch 2023.2.62_v7.0.401-4.fc40 fedora 863 k coreutils-common x86_64 9.4-1.fc40 fedora 2.1 M cracklib x86_64 2.9.11-2.fc39 fedora 94 k crypto-policies noarch 20231113-1.gitb402e82.fc40 fedora 99 k curl x86_64 8.4.0-1.fc40 fedora 362 k cyrus-sasl-lib x86_64 2.1.28-11.fc39 fedora 793 k debugedit x86_64 5.0-11.fc40 fedora 77 k dwz x86_64 0.15-3.fc39 fedora 134 k ed x86_64 1.19-4.fc39 fedora 79 k efi-srpm-macros noarch 5-9.fc39 fedora 22 k elfutils x86_64 0.190-2.fc40 fedora 551 k elfutils-debuginfod-client x86_64 0.190-2.fc40 fedora 39 k elfutils-default-yama-scope noarch 0.190-2.fc40 fedora 14 k elfutils-libelf x86_64 0.190-2.fc40 fedora 195 k elfutils-libs x86_64 0.190-2.fc40 fedora 260 k fedora-gpg-keys noarch 40-0.2 fedora 130 k fedora-release noarch 40-0.20 fedora 9.3 k fedora-release-identity-basic noarch 40-0.20 fedora 10 k fedora-repos noarch 40-0.2 fedora 9.3 k fedora-repos-rawhide noarch 40-0.2 fedora 8.9 k file x86_64 5.45-1.fc40 fedora 49 k file-libs x86_64 5.45-1.fc40 fedora 763 k filesystem x86_64 3.18-6.fc39 fedora 1.1 M fonts-srpm-macros noarch 1:2.0.5-12.fc39 fedora 26 k forge-srpm-macros noarch 0.1.0-1.fc40 fedora 18 k fpc-srpm-macros noarch 1.3-8.fc39 fedora 7.4 k gdb-minimal x86_64 13.2-11.fc40 fedora 4.2 M gdbm x86_64 1:1.23-4.fc39 fedora 155 k gdbm-libs x86_64 1:1.23-4.fc39 fedora 56 k ghc-srpm-macros noarch 1.6.1-3.fc40 fedora 8.1 k glibc x86_64 2.38.9000-22.fc40 fedora 2.2 M glibc-common x86_64 2.38.9000-22.fc40 fedora 363 k glibc-gconv-extra x86_64 2.38.9000-22.fc40 fedora 1.7 M gmp x86_64 1:6.2.1-5.fc39 fedora 313 k gnat-srpm-macros noarch 6-3.fc39 fedora 8.8 k go-srpm-macros noarch 3.3.1-1.fc40 fedora 28 k jansson x86_64 2.13.1-7.fc40 copr_base 45 k kernel-srpm-macros noarch 1.0-20.fc39 fedora 10 k keyutils-libs x86_64 1.6.1-7.fc39 fedora 31 k krb5-libs x86_64 1.21.2-2.fc40 copr_base 761 k libacl x86_64 2.3.1-10.fc40 fedora 23 k libarchive x86_64 3.7.2-1.fc40 fedora 408 k libattr x86_64 2.5.1-9.fc40 fedora 18 k libblkid x86_64 2.39.2-1.fc40 fedora 116 k libbrotli x86_64 1.1.0-1.fc40 fedora 336 k libcap x86_64 2.69-1.fc40 fedora 83 k libcap-ng x86_64 0.8.3-8.fc40 fedora 32 k libcom_err x86_64 1.47.0-2.fc39 fedora 26 k libcurl x86_64 8.4.0-1.fc40 fedora 343 k libeconf x86_64 0.5.2-1.fc40 fedora 30 k libevent x86_64 2.1.12-9.fc39 fedora 258 k libfdisk x86_64 2.39.2-1.fc40 fedora 162 k libffi x86_64 3.4.4-4.fc39 fedora 40 k libgcc x86_64 13.2.1-5.fc40 fedora 112 k libgomp x86_64 13.2.1-5.fc40 fedora 321 k libidn2 x86_64 2.3.4-3.fc39 fedora 117 k libmount x86_64 2.39.2-1.fc40 fedora 154 k libnghttp2 x86_64 1.58.0-1.fc40 fedora 76 k libnsl2 x86_64 2.0.0-6.fc39 fedora 30 k libpkgconf x86_64 1.9.5-2.fc39 fedora 38 k libpsl x86_64 0.21.2-4.fc39 fedora 63 k libpwquality x86_64 1.4.5-6.fc39 fedora 120 k libselinux x86_64 3.6-0.rc1.1.fc40 fedora 87 k libsemanage x86_64 3.6-0.rc1.1.fc40 fedora 116 k libsepol x86_64 3.6-0.rc1.1.fc40 fedora 340 k libsigsegv x86_64 2.14-5.fc39 fedora 27 k libsmartcols x86_64 2.39.2-1.fc40 fedora 67 k libssh x86_64 0.10.5-2.fc39 fedora 211 k libssh-config noarch 0.10.5-2.fc39 fedora 9.2 k libstdc++ x86_64 13.2.1-5.fc40 fedora 864 k libtasn1 x86_64 4.19.0-3.fc39 fedora 74 k libtirpc x86_64 1.3.4-0.fc40 fedora 94 k libunistring x86_64 1.1-5.fc40 fedora 543 k libutempter x86_64 1.2.1-10.fc39 fedora 26 k libuuid x86_64 2.39.2-1.fc40 fedora 28 k libverto x86_64 0.3.2-6.fc39 fedora 20 k libxcrypt x86_64 4.4.36-2.fc39 fedora 119 k libxml2 x86_64 2.12.0-1.fc40 fedora 698 k libzstd x86_64 1.5.5-4.fc39 fedora 309 k lua-libs x86_64 5.4.6-3.fc39 fedora 133 k lua-srpm-macros noarch 1-9.fc39 fedora 8.6 k lz4-libs x86_64 1.9.4-4.fc39 fedora 67 k mpfr x86_64 4.2.1-1.fc40 fedora 343 k ncurses-base noarch 6.4-8.20231001.fc40 fedora 88 k ncurses-libs x86_64 6.4-8.20231001.fc40 fedora 338 k ocaml-srpm-macros noarch 9-1.fc40 fedora 9.0 k openblas-srpm-macros noarch 2-14.fc39 fedora 7.5 k openldap x86_64 2.6.6-1.fc39 fedora 255 k openssl-libs x86_64 1:3.1.4-1.fc40 fedora 2.2 M p11-kit x86_64 0.25.3-1.fc40 fedora 522 k p11-kit-trust x86_64 0.25.3-1.fc40 fedora 142 k package-notes-srpm-macros noarch 0.5-9.fc39 fedora 11 k pam x86_64 1.5.3-8.fc40 fedora 547 k pam-libs x86_64 1.5.3-8.fc40 fedora 57 k pcre2 x86_64 10.42-2.fc40 fedora 233 k pcre2-syntax noarch 10.42-2.fc40 fedora 143 k perl-srpm-macros noarch 1-51.fc39 fedora 8.0 k pkgconf x86_64 1.9.5-2.fc39 fedora 42 k pkgconf-m4 noarch 1.9.5-2.fc39 fedora 14 k pkgconf-pkg-config x86_64 1.9.5-2.fc39 fedora 9.6 k popt x86_64 1.19-3.fc39 fedora 66 k publicsuffix-list-dafsa noarch 20230812-1.fc40 fedora 57 k pyproject-srpm-macros noarch 1.10.0-1.fc40 fedora 14 k python-srpm-macros noarch 3.12-4.fc40 fedora 25 k qt5-srpm-macros noarch 5.15.11-1.fc40 fedora 8.3 k qt6-srpm-macros noarch 6.6.0-1.fc40 fedora 8.7 k readline x86_64 8.2-4.fc39 fedora 213 k rpm x86_64 4.19.0-2.fc40 fedora 538 k rpm-build-libs x86_64 4.19.0-2.fc40 fedora 96 k rpm-libs x86_64 4.19.0-2.fc40 fedora 312 k rpm-sequoia x86_64 1.5.0-1.fc40 fedora 883 k rust-srpm-macros noarch 25.2-2.fc40 fedora 13 k setup noarch 2.14.4-1.fc39 fedora 154 k sqlite-libs x86_64 3.44.0-1.fc40 fedora 692 k systemd-libs x86_64 255~rc3-1.fc40 fedora 702 k util-linux-core x86_64 2.39.2-1.fc40 fedora 493 k xxhash-libs x86_64 0.8.2-1.fc39 fedora 37 k xz-libs x86_64 5.4.5-1.fc40 fedora 108 k zip x86_64 3.0-39.fc40 fedora 266 k zlib x86_64 1.2.13-5.fc40 fedora 94 k zstd x86_64 1.5.5-4.fc39 fedora 482 k Installing Groups: Buildsystem building group Transaction Summary ================================================================================ Install 152 Packages Total size: 52 M Installed size: 180 M Downloading Packages: [SKIPPED] jansson-2.13.1-7.fc40.x86_64.rpm: Already downloaded [SKIPPED] krb5-libs-1.21.2-2.fc40.x86_64.rpm: Already downloaded [SKIPPED] alternatives-1.25-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] ansible-srpm-macros-1-11.fc39.noarch.rpm: Already downloaded [SKIPPED] audit-libs-3.1.2-5.fc40.x86_64.rpm: Already downloaded [SKIPPED] authselect-1.4.3-1.fc40.x86_64.rpm: Already downloaded [SKIPPED] authselect-libs-1.4.3-1.fc40.x86_64.rpm: Already downloaded [SKIPPED] basesystem-11-18.fc39.noarch.rpm: Already downloaded [SKIPPED] bash-5.2.21-2.fc40.x86_64.rpm: Already downloaded [SKIPPED] binutils-2.41-14.fc40.x86_64.rpm: Already downloaded [SKIPPED] binutils-gold-2.41-14.fc40.x86_64.rpm: Already downloaded [SKIPPED] bzip2-1.0.8-16.fc39.x86_64.rpm: Already downloaded [SKIPPED] bzip2-libs-1.0.8-16.fc39.x86_64.rpm: Already downloaded [SKIPPED] ca-certificates-2023.2.62_v7.0.401-4.fc40.noarch.rpm: Already downloaded [SKIPPED] coreutils-9.4-1.fc40.x86_64.rpm: Already downloaded [SKIPPED] coreutils-common-9.4-1.fc40.x86_64.rpm: Already downloaded [SKIPPED] cpio-2.14-5.fc40.x86_64.rpm: Already downloaded [SKIPPED] cracklib-2.9.11-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] crypto-policies-20231113-1.gitb402e82.fc40.noarch.rpm: Already downloaded [SKIPPED] curl-8.4.0-1.fc40.x86_64.rpm: Already downloaded [SKIPPED] cyrus-sasl-lib-2.1.28-11.fc39.x86_64.rpm: Already downloaded [SKIPPED] debugedit-5.0-11.fc40.x86_64.rpm: Already downloaded [SKIPPED] diffutils-3.10-3.fc39.x86_64.rpm: Already downloaded [SKIPPED] dwz-0.15-3.fc39.x86_64.rpm: Already downloaded [SKIPPED] ed-1.19-4.fc39.x86_64.rpm: Already downloaded [SKIPPED] efi-srpm-macros-5-9.fc39.noarch.rpm: Already downloaded [SKIPPED] elfutils-0.190-2.fc40.x86_64.rpm: Already downloaded [SKIPPED] elfutils-debuginfod-client-0.190-2.fc40.x86_64.rpm: Already downloaded [SKIPPED] elfutils-default-yama-scope-0.190-2.fc40.noarch.rpm: Already downloaded [SKIPPED] elfutils-libelf-0.190-2.fc40.x86_64.rpm: Already downloaded [SKIPPED] elfutils-libs-0.190-2.fc40.x86_64.rpm: Already downloaded [SKIPPED] fedora-gpg-keys-40-0.2.noarch.rpm: Already downloaded [SKIPPED] fedora-release-40-0.20.noarch.rpm: Already downloaded [SKIPPED] fedora-release-common-40-0.20.noarch.rpm: Already downloaded [SKIPPED] fedora-release-identity-basic-40-0.20.noarch.rpm: Already downloaded [SKIPPED] fedora-repos-40-0.2.noarch.rpm: Already downloaded [SKIPPED] fedora-repos-rawhide-40-0.2.noarch.rpm: Already downloaded [SKIPPED] file-5.45-1.fc40.x86_64.rpm: Already downloaded [SKIPPED] file-libs-5.45-1.fc40.x86_64.rpm: Already downloaded [SKIPPED] filesystem-3.18-6.fc39.x86_64.rpm: Already downloaded [SKIPPED] findutils-4.9.0-6.fc40.x86_64.rpm: Already downloaded [SKIPPED] fonts-srpm-macros-2.0.5-12.fc39.noarch.rpm: Already downloaded [SKIPPED] forge-srpm-macros-0.1.0-1.fc40.noarch.rpm: Already downloaded [SKIPPED] fpc-srpm-macros-1.3-8.fc39.noarch.rpm: Already downloaded [SKIPPED] gawk-5.2.2-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] gdb-minimal-13.2-11.fc40.x86_64.rpm: Already downloaded [SKIPPED] gdbm-1.23-4.fc39.x86_64.rpm: Already downloaded [SKIPPED] gdbm-libs-1.23-4.fc39.x86_64.rpm: Already downloaded [SKIPPED] 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[SKIPPED] sqlite-libs-3.44.0-1.fc40.x86_64.rpm: Already downloaded [SKIPPED] systemd-libs-255~rc3-1.fc40.x86_64.rpm: Already downloaded [SKIPPED] tar-1.35-2.fc40.x86_64.rpm: Already downloaded [SKIPPED] unzip-6.0-62.fc39.x86_64.rpm: Already downloaded [SKIPPED] util-linux-2.39.2-1.fc40.x86_64.rpm: Already downloaded [SKIPPED] util-linux-core-2.39.2-1.fc40.x86_64.rpm: Already downloaded [SKIPPED] which-2.21-40.fc39.x86_64.rpm: Already downloaded [SKIPPED] xxhash-libs-0.8.2-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] xz-5.4.5-1.fc40.x86_64.rpm: Already downloaded [SKIPPED] xz-libs-5.4.5-1.fc40.x86_64.rpm: Already downloaded [SKIPPED] zip-3.0-39.fc40.x86_64.rpm: Already downloaded [SKIPPED] zlib-1.2.13-5.fc40.x86_64.rpm: Already downloaded [SKIPPED] zstd-1.5.5-4.fc39.x86_64.rpm: Already downloaded fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0xA15B79CC: Userid : "Fedora (40) " Fingerprint: 115D F9AE F857 853E E844 5D0A 0727 707E A15B 79CC From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-40-primary Key imported successfully fedora 1.6 MB/s | 1.6 kB 00:00 GPG key at file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-40-primary (0xA15B79CC) is already installed fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0x18B8E74C: Userid : "Fedora (39) " Fingerprint: E8F2 3996 F232 1864 0CB4 4CBE 75CF 5AC4 18B8 E74C From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-39-primary Key imported successfully Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.18-6.fc39.x86_64 1/1 Preparing : 1/1 Installing : libgcc-13.2.1-5.fc40.x86_64 1/152 Running scriptlet: libgcc-13.2.1-5.fc40.x86_64 1/152 Installing : crypto-policies-20231113-1.gitb402e82.fc40.noarc 2/152 Running scriptlet: crypto-policies-20231113-1.gitb402e82.fc40.noarc 2/152 Installing : fedora-release-identity-basic-40-0.20.noarch 3/152 Installing : fedora-repos-rawhide-40-0.2.noarch 4/152 Installing : fedora-gpg-keys-40-0.2.noarch 5/152 Installing : fedora-repos-40-0.2.noarch 6/152 Installing : fedora-release-common-40-0.20.noarch 7/152 Installing : fedora-release-40-0.20.noarch 8/152 Installing : setup-2.14.4-1.fc39.noarch 9/152 warning: /etc/hosts created as /etc/hosts.rpmnew Running scriptlet: setup-2.14.4-1.fc39.noarch 9/152 Installing : filesystem-3.18-6.fc39.x86_64 10/152 Installing : basesystem-11-18.fc39.noarch 11/152 Installing : rust-srpm-macros-25.2-2.fc40.noarch 12/152 Installing : qt6-srpm-macros-6.6.0-1.fc40.noarch 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Installing : gawk-5.2.2-2.fc39.x86_64 102/152 Installing : libverto-0.3.2-6.fc39.x86_64 103/152 Installing : xxhash-libs-0.8.2-1.fc39.x86_64 104/152 Installing : libssh-config-0.10.5-2.fc39.noarch 105/152 Installing : kernel-srpm-macros-1.0-20.fc39.noarch 106/152 Installing : gnat-srpm-macros-6-3.fc39.noarch 107/152 Installing : ghc-srpm-macros-1.6.1-3.fc40.noarch 108/152 Installing : fpc-srpm-macros-1.3-8.fc39.noarch 109/152 Installing : coreutils-common-9.4-1.fc40.x86_64 110/152 Installing : openssl-libs-1:3.1.4-1.fc40.x86_64 111/152 Installing : coreutils-9.4-1.fc40.x86_64 112/152 Running scriptlet: ca-certificates-2023.2.62_v7.0.401-4.fc40.noarch 113/152 Installing : ca-certificates-2023.2.62_v7.0.401-4.fc40.noarch 113/152 Running scriptlet: ca-certificates-2023.2.62_v7.0.401-4.fc40.noarch 113/152 Installing : krb5-libs-1.21.2-2.fc40.x86_64 114/152 Installing : libtirpc-1.3.4-0.fc40.x86_64 115/152 Running scriptlet: authselect-libs-1.4.3-1.fc40.x86_64 116/152 Installing : authselect-libs-1.4.3-1.fc40.x86_64 116/152 Installing : gzip-1.12-6.fc39.x86_64 117/152 Installing : cracklib-2.9.11-2.fc39.x86_64 118/152 Installing : libpwquality-1.4.5-6.fc39.x86_64 119/152 Installing : authselect-1.4.3-1.fc40.x86_64 120/152 Installing : libnsl2-2.0.0-6.fc39.x86_64 121/152 Installing : pam-1.5.3-8.fc40.x86_64 122/152 Installing : libssh-0.10.5-2.fc39.x86_64 123/152 Installing : libarchive-3.7.2-1.fc40.x86_64 124/152 Installing : libevent-2.1.12-9.fc39.x86_64 125/152 Installing : openldap-2.6.6-1.fc39.x86_64 126/152 Installing : libcurl-8.4.0-1.fc40.x86_64 127/152 Installing : elfutils-libs-0.190-2.fc40.x86_64 128/152 Installing : elfutils-debuginfod-client-0.190-2.fc40.x86_64 129/152 Installing : binutils-2.41-14.fc40.x86_64 130/152 Running scriptlet: binutils-2.41-14.fc40.x86_64 130/152 Installing : binutils-gold-2.41-14.fc40.x86_64 131/152 Running scriptlet: binutils-gold-2.41-14.fc40.x86_64 131/152 Installing : elfutils-0.190-2.fc40.x86_64 132/152 Installing : gdb-minimal-13.2-11.fc40.x86_64 133/152 Installing : debugedit-5.0-11.fc40.x86_64 134/152 Installing : curl-8.4.0-1.fc40.x86_64 135/152 Installing : rpm-sequoia-1.5.0-1.fc40.x86_64 136/152 Installing : rpm-libs-4.19.0-2.fc40.x86_64 137/152 Running scriptlet: rpm-4.19.0-2.fc40.x86_64 138/152 Installing : rpm-4.19.0-2.fc40.x86_64 138/152 Installing : efi-srpm-macros-5-9.fc39.noarch 139/152 Installing : lua-srpm-macros-1-9.fc39.noarch 140/152 Installing : rpm-build-libs-4.19.0-2.fc40.x86_64 141/152 Installing : ansible-srpm-macros-1-11.fc39.noarch 142/152 Installing : fonts-srpm-macros-1:2.0.5-12.fc39.noarch 143/152 Installing : forge-srpm-macros-0.1.0-1.fc40.noarch 144/152 Installing : go-srpm-macros-3.3.1-1.fc40.noarch 145/152 Installing : python-srpm-macros-3.12-4.fc40.noarch 146/152 Installing : redhat-rpm-config-271-1.fc40.noarch 147/152 Installing : rpm-build-4.19.0-2.fc40.x86_64 148/152 Installing : pyproject-srpm-macros-1.10.0-1.fc40.noarch 149/152 Installing : util-linux-2.39.2-1.fc40.x86_64 150/152 Installing : which-2.21-40.fc39.x86_64 151/152 Installing : info-7.1-1.fc40.x86_64 152/152 Running scriptlet: filesystem-3.18-6.fc39.x86_64 152/152 Running scriptlet: ca-certificates-2023.2.62_v7.0.401-4.fc40.noarch 152/152 Running scriptlet: authselect-libs-1.4.3-1.fc40.x86_64 152/152 Running scriptlet: rpm-4.19.0-2.fc40.x86_64 152/152 Running scriptlet: info-7.1-1.fc40.x86_64 152/152 Installed: alternatives-1.25-1.fc39.x86_64 ansible-srpm-macros-1-11.fc39.noarch audit-libs-3.1.2-5.fc40.x86_64 authselect-1.4.3-1.fc40.x86_64 authselect-libs-1.4.3-1.fc40.x86_64 basesystem-11-18.fc39.noarch bash-5.2.21-2.fc40.x86_64 binutils-2.41-14.fc40.x86_64 binutils-gold-2.41-14.fc40.x86_64 bzip2-1.0.8-16.fc39.x86_64 bzip2-libs-1.0.8-16.fc39.x86_64 ca-certificates-2023.2.62_v7.0.401-4.fc40.noarch coreutils-9.4-1.fc40.x86_64 coreutils-common-9.4-1.fc40.x86_64 cpio-2.14-5.fc40.x86_64 cracklib-2.9.11-2.fc39.x86_64 crypto-policies-20231113-1.gitb402e82.fc40.noarch curl-8.4.0-1.fc40.x86_64 cyrus-sasl-lib-2.1.28-11.fc39.x86_64 debugedit-5.0-11.fc40.x86_64 diffutils-3.10-3.fc39.x86_64 dwz-0.15-3.fc39.x86_64 ed-1.19-4.fc39.x86_64 efi-srpm-macros-5-9.fc39.noarch elfutils-0.190-2.fc40.x86_64 elfutils-debuginfod-client-0.190-2.fc40.x86_64 elfutils-default-yama-scope-0.190-2.fc40.noarch elfutils-libelf-0.190-2.fc40.x86_64 elfutils-libs-0.190-2.fc40.x86_64 fedora-gpg-keys-40-0.2.noarch fedora-release-40-0.20.noarch fedora-release-common-40-0.20.noarch fedora-release-identity-basic-40-0.20.noarch fedora-repos-40-0.2.noarch fedora-repos-rawhide-40-0.2.noarch file-5.45-1.fc40.x86_64 file-libs-5.45-1.fc40.x86_64 filesystem-3.18-6.fc39.x86_64 findutils-1:4.9.0-6.fc40.x86_64 fonts-srpm-macros-1:2.0.5-12.fc39.noarch forge-srpm-macros-0.1.0-1.fc40.noarch fpc-srpm-macros-1.3-8.fc39.noarch gawk-5.2.2-2.fc39.x86_64 gdb-minimal-13.2-11.fc40.x86_64 gdbm-1:1.23-4.fc39.x86_64 gdbm-libs-1:1.23-4.fc39.x86_64 ghc-srpm-macros-1.6.1-3.fc40.noarch glibc-2.38.9000-22.fc40.x86_64 glibc-common-2.38.9000-22.fc40.x86_64 glibc-gconv-extra-2.38.9000-22.fc40.x86_64 glibc-minimal-langpack-2.38.9000-22.fc40.x86_64 gmp-1:6.2.1-5.fc39.x86_64 gnat-srpm-macros-6-3.fc39.noarch go-srpm-macros-3.3.1-1.fc40.noarch grep-3.11-5.fc40.x86_64 gzip-1.12-6.fc39.x86_64 info-7.1-1.fc40.x86_64 jansson-2.13.1-7.fc40.x86_64 kernel-srpm-macros-1.0-20.fc39.noarch keyutils-libs-1.6.1-7.fc39.x86_64 krb5-libs-1.21.2-2.fc40.x86_64 libacl-2.3.1-10.fc40.x86_64 libarchive-3.7.2-1.fc40.x86_64 libattr-2.5.1-9.fc40.x86_64 libblkid-2.39.2-1.fc40.x86_64 libbrotli-1.1.0-1.fc40.x86_64 libcap-2.69-1.fc40.x86_64 libcap-ng-0.8.3-8.fc40.x86_64 libcom_err-1.47.0-2.fc39.x86_64 libcurl-8.4.0-1.fc40.x86_64 libeconf-0.5.2-1.fc40.x86_64 libevent-2.1.12-9.fc39.x86_64 libfdisk-2.39.2-1.fc40.x86_64 libffi-3.4.4-4.fc39.x86_64 libgcc-13.2.1-5.fc40.x86_64 libgomp-13.2.1-5.fc40.x86_64 libidn2-2.3.4-3.fc39.x86_64 libmount-2.39.2-1.fc40.x86_64 libnghttp2-1.58.0-1.fc40.x86_64 libnsl2-2.0.0-6.fc39.x86_64 libpkgconf-1.9.5-2.fc39.x86_64 libpsl-0.21.2-4.fc39.x86_64 libpwquality-1.4.5-6.fc39.x86_64 libselinux-3.6-0.rc1.1.fc40.x86_64 libsemanage-3.6-0.rc1.1.fc40.x86_64 libsepol-3.6-0.rc1.1.fc40.x86_64 libsigsegv-2.14-5.fc39.x86_64 libsmartcols-2.39.2-1.fc40.x86_64 libssh-0.10.5-2.fc39.x86_64 libssh-config-0.10.5-2.fc39.noarch libstdc++-13.2.1-5.fc40.x86_64 libtasn1-4.19.0-3.fc39.x86_64 libtirpc-1.3.4-0.fc40.x86_64 libunistring-1.1-5.fc40.x86_64 libutempter-1.2.1-10.fc39.x86_64 libuuid-2.39.2-1.fc40.x86_64 libverto-0.3.2-6.fc39.x86_64 libxcrypt-4.4.36-2.fc39.x86_64 libxml2-2.12.0-1.fc40.x86_64 libzstd-1.5.5-4.fc39.x86_64 lua-libs-5.4.6-3.fc39.x86_64 lua-srpm-macros-1-9.fc39.noarch lz4-libs-1.9.4-4.fc39.x86_64 mpfr-4.2.1-1.fc40.x86_64 ncurses-base-6.4-8.20231001.fc40.noarch ncurses-libs-6.4-8.20231001.fc40.x86_64 ocaml-srpm-macros-9-1.fc40.noarch openblas-srpm-macros-2-14.fc39.noarch openldap-2.6.6-1.fc39.x86_64 openssl-libs-1:3.1.4-1.fc40.x86_64 p11-kit-0.25.3-1.fc40.x86_64 p11-kit-trust-0.25.3-1.fc40.x86_64 package-notes-srpm-macros-0.5-9.fc39.noarch pam-1.5.3-8.fc40.x86_64 pam-libs-1.5.3-8.fc40.x86_64 patch-2.7.6-22.fc39.x86_64 pcre2-10.42-2.fc40.x86_64 pcre2-syntax-10.42-2.fc40.noarch perl-srpm-macros-1-51.fc39.noarch pkgconf-1.9.5-2.fc39.x86_64 pkgconf-m4-1.9.5-2.fc39.noarch pkgconf-pkg-config-1.9.5-2.fc39.x86_64 popt-1.19-3.fc39.x86_64 publicsuffix-list-dafsa-20230812-1.fc40.noarch pyproject-srpm-macros-1.10.0-1.fc40.noarch python-srpm-macros-3.12-4.fc40.noarch qt5-srpm-macros-5.15.11-1.fc40.noarch qt6-srpm-macros-6.6.0-1.fc40.noarch readline-8.2-4.fc39.x86_64 redhat-rpm-config-271-1.fc40.noarch rpm-4.19.0-2.fc40.x86_64 rpm-build-4.19.0-2.fc40.x86_64 rpm-build-libs-4.19.0-2.fc40.x86_64 rpm-libs-4.19.0-2.fc40.x86_64 rpm-sequoia-1.5.0-1.fc40.x86_64 rust-srpm-macros-25.2-2.fc40.noarch sed-4.8-14.fc39.x86_64 setup-2.14.4-1.fc39.noarch shadow-utils-2:4.14.0-2.fc40.x86_64 sqlite-libs-3.44.0-1.fc40.x86_64 systemd-libs-255~rc3-1.fc40.x86_64 tar-2:1.35-2.fc40.x86_64 unzip-6.0-62.fc39.x86_64 util-linux-2.39.2-1.fc40.x86_64 util-linux-core-2.39.2-1.fc40.x86_64 which-2.21-40.fc39.x86_64 xxhash-libs-0.8.2-1.fc39.x86_64 xz-5.4.5-1.fc40.x86_64 xz-libs-5.4.5-1.fc40.x86_64 zip-3.0-39.fc40.x86_64 zlib-1.2.13-5.fc40.x86_64 zstd-1.5.5-4.fc39.x86_64 Complete! Finish: installing minimal buildroot with dnf Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: alternatives-1.25-1.fc39.x86_64 ansible-srpm-macros-1-11.fc39.noarch audit-libs-3.1.2-5.fc40.x86_64 authselect-1.4.3-1.fc40.x86_64 authselect-libs-1.4.3-1.fc40.x86_64 basesystem-11-18.fc39.noarch bash-5.2.21-2.fc40.x86_64 binutils-2.41-14.fc40.x86_64 binutils-gold-2.41-14.fc40.x86_64 bzip2-1.0.8-16.fc39.x86_64 bzip2-libs-1.0.8-16.fc39.x86_64 ca-certificates-2023.2.62_v7.0.401-4.fc40.noarch coreutils-9.4-1.fc40.x86_64 coreutils-common-9.4-1.fc40.x86_64 cpio-2.14-5.fc40.x86_64 cracklib-2.9.11-2.fc39.x86_64 crypto-policies-20231113-1.gitb402e82.fc40.noarch curl-8.4.0-1.fc40.x86_64 cyrus-sasl-lib-2.1.28-11.fc39.x86_64 debugedit-5.0-11.fc40.x86_64 diffutils-3.10-3.fc39.x86_64 dwz-0.15-3.fc39.x86_64 ed-1.19-4.fc39.x86_64 efi-srpm-macros-5-9.fc39.noarch elfutils-0.190-2.fc40.x86_64 elfutils-debuginfod-client-0.190-2.fc40.x86_64 elfutils-default-yama-scope-0.190-2.fc40.noarch elfutils-libelf-0.190-2.fc40.x86_64 elfutils-libs-0.190-2.fc40.x86_64 fedora-gpg-keys-40-0.2.noarch fedora-release-40-0.20.noarch fedora-release-common-40-0.20.noarch fedora-release-identity-basic-40-0.20.noarch fedora-repos-40-0.2.noarch fedora-repos-rawhide-40-0.2.noarch file-5.45-1.fc40.x86_64 file-libs-5.45-1.fc40.x86_64 filesystem-3.18-6.fc39.x86_64 findutils-4.9.0-6.fc40.x86_64 fonts-srpm-macros-2.0.5-12.fc39.noarch forge-srpm-macros-0.1.0-1.fc40.noarch fpc-srpm-macros-1.3-8.fc39.noarch gawk-5.2.2-2.fc39.x86_64 gdb-minimal-13.2-11.fc40.x86_64 gdbm-1.23-4.fc39.x86_64 gdbm-libs-1.23-4.fc39.x86_64 ghc-srpm-macros-1.6.1-3.fc40.noarch glibc-2.38.9000-22.fc40.x86_64 glibc-common-2.38.9000-22.fc40.x86_64 glibc-gconv-extra-2.38.9000-22.fc40.x86_64 glibc-minimal-langpack-2.38.9000-22.fc40.x86_64 gmp-6.2.1-5.fc39.x86_64 gnat-srpm-macros-6-3.fc39.noarch go-srpm-macros-3.3.1-1.fc40.noarch gpg-pubkey-18b8e74c-62f2920f gpg-pubkey-a15b79cc-63d04c2c grep-3.11-5.fc40.x86_64 gzip-1.12-6.fc39.x86_64 info-7.1-1.fc40.x86_64 jansson-2.13.1-7.fc40.x86_64 kernel-srpm-macros-1.0-20.fc39.noarch keyutils-libs-1.6.1-7.fc39.x86_64 krb5-libs-1.21.2-2.fc40.x86_64 libacl-2.3.1-10.fc40.x86_64 libarchive-3.7.2-1.fc40.x86_64 libattr-2.5.1-9.fc40.x86_64 libblkid-2.39.2-1.fc40.x86_64 libbrotli-1.1.0-1.fc40.x86_64 libcap-2.69-1.fc40.x86_64 libcap-ng-0.8.3-8.fc40.x86_64 libcom_err-1.47.0-2.fc39.x86_64 libcurl-8.4.0-1.fc40.x86_64 libeconf-0.5.2-1.fc40.x86_64 libevent-2.1.12-9.fc39.x86_64 libfdisk-2.39.2-1.fc40.x86_64 libffi-3.4.4-4.fc39.x86_64 libgcc-13.2.1-5.fc40.x86_64 libgomp-13.2.1-5.fc40.x86_64 libidn2-2.3.4-3.fc39.x86_64 libmount-2.39.2-1.fc40.x86_64 libnghttp2-1.58.0-1.fc40.x86_64 libnsl2-2.0.0-6.fc39.x86_64 libpkgconf-1.9.5-2.fc39.x86_64 libpsl-0.21.2-4.fc39.x86_64 libpwquality-1.4.5-6.fc39.x86_64 libselinux-3.6-0.rc1.1.fc40.x86_64 libsemanage-3.6-0.rc1.1.fc40.x86_64 libsepol-3.6-0.rc1.1.fc40.x86_64 libsigsegv-2.14-5.fc39.x86_64 libsmartcols-2.39.2-1.fc40.x86_64 libssh-0.10.5-2.fc39.x86_64 libssh-config-0.10.5-2.fc39.noarch libstdc++-13.2.1-5.fc40.x86_64 libtasn1-4.19.0-3.fc39.x86_64 libtirpc-1.3.4-0.fc40.x86_64 libunistring-1.1-5.fc40.x86_64 libutempter-1.2.1-10.fc39.x86_64 libuuid-2.39.2-1.fc40.x86_64 libverto-0.3.2-6.fc39.x86_64 libxcrypt-4.4.36-2.fc39.x86_64 libxml2-2.12.0-1.fc40.x86_64 libzstd-1.5.5-4.fc39.x86_64 lua-libs-5.4.6-3.fc39.x86_64 lua-srpm-macros-1-9.fc39.noarch lz4-libs-1.9.4-4.fc39.x86_64 mpfr-4.2.1-1.fc40.x86_64 ncurses-base-6.4-8.20231001.fc40.noarch ncurses-libs-6.4-8.20231001.fc40.x86_64 ocaml-srpm-macros-9-1.fc40.noarch openblas-srpm-macros-2-14.fc39.noarch openldap-2.6.6-1.fc39.x86_64 openssl-libs-3.1.4-1.fc40.x86_64 p11-kit-0.25.3-1.fc40.x86_64 p11-kit-trust-0.25.3-1.fc40.x86_64 package-notes-srpm-macros-0.5-9.fc39.noarch pam-1.5.3-8.fc40.x86_64 pam-libs-1.5.3-8.fc40.x86_64 patch-2.7.6-22.fc39.x86_64 pcre2-10.42-2.fc40.x86_64 pcre2-syntax-10.42-2.fc40.noarch perl-srpm-macros-1-51.fc39.noarch pkgconf-1.9.5-2.fc39.x86_64 pkgconf-m4-1.9.5-2.fc39.noarch pkgconf-pkg-config-1.9.5-2.fc39.x86_64 popt-1.19-3.fc39.x86_64 publicsuffix-list-dafsa-20230812-1.fc40.noarch pyproject-srpm-macros-1.10.0-1.fc40.noarch python-srpm-macros-3.12-4.fc40.noarch qt5-srpm-macros-5.15.11-1.fc40.noarch qt6-srpm-macros-6.6.0-1.fc40.noarch readline-8.2-4.fc39.x86_64 redhat-rpm-config-271-1.fc40.noarch rpm-4.19.0-2.fc40.x86_64 rpm-build-4.19.0-2.fc40.x86_64 rpm-build-libs-4.19.0-2.fc40.x86_64 rpm-libs-4.19.0-2.fc40.x86_64 rpm-sequoia-1.5.0-1.fc40.x86_64 rust-srpm-macros-25.2-2.fc40.noarch sed-4.8-14.fc39.x86_64 setup-2.14.4-1.fc39.noarch shadow-utils-4.14.0-2.fc40.x86_64 sqlite-libs-3.44.0-1.fc40.x86_64 systemd-libs-255~rc3-1.fc40.x86_64 tar-1.35-2.fc40.x86_64 unzip-6.0-62.fc39.x86_64 util-linux-2.39.2-1.fc40.x86_64 util-linux-core-2.39.2-1.fc40.x86_64 which-2.21-40.fc39.x86_64 xxhash-libs-0.8.2-1.fc39.x86_64 xz-5.4.5-1.fc40.x86_64 xz-libs-5.4.5-1.fc40.x86_64 zip-3.0-39.fc40.x86_64 zlib-1.2.13-5.fc40.x86_64 zstd-1.5.5-4.fc39.x86_64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1697414400 Wrote: /builddir/build/SRPMS/python-pynwb-2.5.0-3.fc40.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1700757302.802967/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-x86_64-1700757302.802967/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-x86_64-1700757302.802967/root/var/log/dnf.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-kzz2iqw8/python-pynwb/python-pynwb.spec) Config(child) 0 minutes 34 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/python-pynwb-2.5.0-3.fc40.src.rpm) Config(fedora-rawhide-x86_64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1700757302.802967/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1700757302.802967/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1700757302.802967/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Finish: chroot init INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.0-2.fc40.x86_64 rpm-sequoia-1.5.0-1.fc40.x86_64 python3-dnf-4.18.1-2.fc40.noarch python3-dnf-plugins-core-4.4.3-1.fc40.noarch yum-4.18.1-2.fc40.noarch Start: build phase for python-pynwb-2.5.0-3.fc40.src.rpm Start: build setup for python-pynwb-2.5.0-3.fc40.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1697414400 Wrote: /builddir/build/SRPMS/python-pynwb-2.5.0-3.fc40.src.rpm No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 69 kB/s | 1.5 kB 00:00 Copr repository 103 MB/s | 5.2 MB 00:00 fedora 157 kB/s | 20 kB 00:00 Dependencies resolved. ================================================================================ Package Arch Version Repository Size ================================================================================ Installing: python3-devel x86_64 3.12.0-2.fc40 fedora 311 k python3-pytest noarch 7.4.3-1.fc40 copr_base 1.8 M Installing dependencies: expat x86_64 2.5.0-3.fc39 fedora 110 k libb2 x86_64 0.98.1-9.fc39 fedora 25 k mpdecimal x86_64 2.5.1-7.fc39 fedora 89 k pyproject-rpm-macros noarch 1.10.0-1.fc40 fedora 41 k python-pip-wheel noarch 23.2.1-1.fc40 copr_base 1.5 M python-rpm-macros noarch 3.12-4.fc40 fedora 19 k python3 x86_64 3.12.0-2.fc40 fedora 26 k python3-iniconfig noarch 1.1.1-14.fc39 fedora 18 k python3-libs x86_64 3.12.0-2.fc40 fedora 9.2 M python3-packaging noarch 23.2-2.fc40 copr_base 116 k python3-pluggy noarch 1.3.0-1.fc40 fedora 56 k python3-rpm-generators noarch 14-8.fc40 fedora 30 k python3-rpm-macros noarch 3.12-4.fc40 fedora 14 k tzdata noarch 2023c-4.fc40 fedora 717 k Transaction Summary ================================================================================ Install 16 Packages Total size: 14 M Installed size: 62 M Downloading Packages: [SKIPPED] python-pip-wheel-23.2.1-1.fc40.noarch.rpm: Already downloaded [SKIPPED] python3-packaging-23.2-2.fc40.noarch.rpm: Already downloaded [SKIPPED] python3-pytest-7.4.3-1.fc40.noarch.rpm: Already downloaded [SKIPPED] expat-2.5.0-3.fc39.x86_64.rpm: Already downloaded [SKIPPED] libb2-0.98.1-9.fc39.x86_64.rpm: Already downloaded [SKIPPED] mpdecimal-2.5.1-7.fc39.x86_64.rpm: Already downloaded [SKIPPED] pyproject-rpm-macros-1.10.0-1.fc40.noarch.rpm: Already downloaded [SKIPPED] python-rpm-macros-3.12-4.fc40.noarch.rpm: Already downloaded [SKIPPED] python3-3.12.0-2.fc40.x86_64.rpm: Already downloaded [SKIPPED] python3-devel-3.12.0-2.fc40.x86_64.rpm: Already downloaded [SKIPPED] python3-iniconfig-1.1.1-14.fc39.noarch.rpm: Already downloaded [SKIPPED] python3-libs-3.12.0-2.fc40.x86_64.rpm: Already downloaded [SKIPPED] python3-pluggy-1.3.0-1.fc40.noarch.rpm: Already downloaded [SKIPPED] python3-rpm-generators-14-8.fc40.noarch.rpm: Already downloaded [SKIPPED] python3-rpm-macros-3.12-4.fc40.noarch.rpm: Already downloaded [SKIPPED] tzdata-2023c-4.fc40.noarch.rpm: Already downloaded Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Installing : python-rpm-macros-3.12-4.fc40.noarch 1/16 Installing : python3-rpm-macros-3.12-4.fc40.noarch 2/16 Installing : pyproject-rpm-macros-1.10.0-1.fc40.noarch 3/16 Installing : tzdata-2023c-4.fc40.noarch 4/16 Installing : mpdecimal-2.5.1-7.fc39.x86_64 5/16 Installing : libb2-0.98.1-9.fc39.x86_64 6/16 Installing : expat-2.5.0-3.fc39.x86_64 7/16 Installing : python-pip-wheel-23.2.1-1.fc40.noarch 8/16 Installing : python3-3.12.0-2.fc40.x86_64 9/16 Installing : python3-libs-3.12.0-2.fc40.x86_64 10/16 Installing : python3-packaging-23.2-2.fc40.noarch 11/16 Installing : python3-rpm-generators-14-8.fc40.noarch 12/16 Installing : python3-iniconfig-1.1.1-14.fc39.noarch 13/16 Installing : python3-pluggy-1.3.0-1.fc40.noarch 14/16 Installing : python3-pytest-7.4.3-1.fc40.noarch 15/16 Installing : python3-devel-3.12.0-2.fc40.x86_64 16/16 Running scriptlet: python3-devel-3.12.0-2.fc40.x86_64 16/16 Installed: expat-2.5.0-3.fc39.x86_64 libb2-0.98.1-9.fc39.x86_64 mpdecimal-2.5.1-7.fc39.x86_64 pyproject-rpm-macros-1.10.0-1.fc40.noarch python-pip-wheel-23.2.1-1.fc40.noarch python-rpm-macros-3.12-4.fc40.noarch python3-3.12.0-2.fc40.x86_64 python3-devel-3.12.0-2.fc40.x86_64 python3-iniconfig-1.1.1-14.fc39.noarch python3-libs-3.12.0-2.fc40.x86_64 python3-packaging-23.2-2.fc40.noarch python3-pluggy-1.3.0-1.fc40.noarch python3-pytest-7.4.3-1.fc40.noarch python3-rpm-generators-14-8.fc40.noarch python3-rpm-macros-3.12-4.fc40.noarch tzdata-2023c-4.fc40.noarch Complete! Finish: build setup for python-pynwb-2.5.0-3.fc40.src.rpm Start: rpmbuild python-pynwb-2.5.0-3.fc40.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1697414400 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.ApelUP + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf pynwb-2.5.0 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/pynwb-2.5.0.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd pynwb-2.5.0 + rm -rf /builddir/build/BUILD/pynwb-2.5.0-SPECPARTS + /usr/bin/mkdir -p /builddir/build/BUILD/pynwb-2.5.0-SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0001-Fix-warnings-from-tests-1778.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + sed -r -i 's@"coverage", "run", "-p"@"/usr/bin/python3"@' tests/validation/test_validate.py + sed -r -i 's/==.*//' requirements.txt + tee requirements-unpinned.txt + sed -r -i '1{s/^/from unittest import skip\n/}' tests/validation/test_validate.py + for n in test_validate_file_cached test_validate_file_cached_extension test_validate_file_cached_extension_pass_ns test_validate_file_cached_ignore test_validate_file_list_namespaces_core test_validate_file_list_namespaces_extension + sed -r -i 's/^([[:blank:]]*)(def test_validate_file_cached\()/\1@skip('\''Re-import issues'\'')\n\1\2/' tests/validation/test_validate.py + for n in test_validate_file_cached test_validate_file_cached_extension test_validate_file_cached_extension_pass_ns test_validate_file_cached_ignore test_validate_file_list_namespaces_core test_validate_file_list_namespaces_extension + sed -r -i 's/^([[:blank:]]*)(def test_validate_file_cached_extension\()/\1@skip('\''Re-import issues'\'')\n\1\2/' tests/validation/test_validate.py + for n in test_validate_file_cached test_validate_file_cached_extension test_validate_file_cached_extension_pass_ns test_validate_file_cached_ignore test_validate_file_list_namespaces_core test_validate_file_list_namespaces_extension + sed -r -i 's/^([[:blank:]]*)(def test_validate_file_cached_extension_pass_ns\()/\1@skip('\''Re-import issues'\'')\n\1\2/' tests/validation/test_validate.py + for n in test_validate_file_cached test_validate_file_cached_extension test_validate_file_cached_extension_pass_ns test_validate_file_cached_ignore test_validate_file_list_namespaces_core test_validate_file_list_namespaces_extension + sed -r -i 's/^([[:blank:]]*)(def test_validate_file_cached_ignore\()/\1@skip('\''Re-import issues'\'')\n\1\2/' tests/validation/test_validate.py + for n in test_validate_file_cached test_validate_file_cached_extension test_validate_file_cached_extension_pass_ns test_validate_file_cached_ignore test_validate_file_list_namespaces_core test_validate_file_list_namespaces_extension + sed -r -i 's/^([[:blank:]]*)(def test_validate_file_list_namespaces_core\()/\1@skip('\''Re-import issues'\'')\n\1\2/' tests/validation/test_validate.py + for n in test_validate_file_cached test_validate_file_cached_extension test_validate_file_cached_extension_pass_ns test_validate_file_cached_ignore test_validate_file_list_namespaces_core test_validate_file_list_namespaces_extension + sed -r -i 's/^([[:blank:]]*)(def test_validate_file_list_namespaces_extension\()/\1@skip('\''Re-import issues'\'')\n\1\2/' tests/validation/test_validate.py + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.rrsMNm + umask 022 + cd /builddir/build/BUILD + cd pynwb-2.5.0 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + echo 'python3dist(wheel)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/pynwb-2.5.0/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + TMPDIR=/builddir/build/BUILD/pynwb-2.5.0/.pyproject-builddir + RPM_TOXENV=py312 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/pynwb-2.5.0/pyproject-wheeldir --output /builddir/build/BUILD/python-pynwb-2.5.0-3.fc40.x86_64-pyproject-buildrequires requirements-unpinned.txt Handling setuptools >= 40.8 from default build backend Requirement not satisfied: setuptools >= 40.8 Handling wheel from default build backend Requirement not satisfied: wheel Exiting dependency generation pass: build backend + cat /builddir/build/BUILD/python-pynwb-2.5.0-3.fc40.x86_64-pyproject-buildrequires + rm -rfv '*.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-pynwb-2.5.0-3.fc40.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 82 kB/s | 1.5 kB 00:00 Copr repository 37 MB/s | 5.2 MB 00:00 fedora 308 kB/s | 20 kB 00:00 Package pyproject-rpm-macros-1.10.0-1.fc40.noarch is already installed. Package python3-devel-3.12.0-2.fc40.x86_64 is already installed. Package python3-devel-3.12.0-2.fc40.x86_64 is already installed. Package python3-pytest-7.4.3-1.fc40.noarch is already installed. Package python3-packaging-23.2-2.fc40.noarch is already installed. Dependencies resolved. ================================================================================ Package Arch Version Repository Size ================================================================================ Installing: python3-pip noarch 23.2.1-1.fc40 copr_base 2.9 M python3-setuptools noarch 68.2.2-1.fc40 fedora 1.5 M python3-wheel noarch 1:0.41.2-1.fc40 fedora 163 k Transaction Summary ================================================================================ Install 3 Packages Total size: 4.6 M Installed size: 22 M Downloading Packages: [SKIPPED] python3-pip-23.2.1-1.fc40.noarch.rpm: Already downloaded [SKIPPED] python3-setuptools-68.2.2-1.fc40.noarch.rpm: Already downloaded [SKIPPED] python3-wheel-0.41.2-1.fc40.noarch.rpm: Already downloaded Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Installing : python3-setuptools-68.2.2-1.fc40.noarch 1/3 Installing : python3-pip-23.2.1-1.fc40.noarch 2/3 Installing : python3-wheel-1:0.41.2-1.fc40.noarch 3/3 Running scriptlet: python3-wheel-1:0.41.2-1.fc40.noarch 3/3 Installed: python3-pip-23.2.1-1.fc40.noarch python3-setuptools-68.2.2-1.fc40.noarch python3-wheel-1:0.41.2-1.fc40.noarch Complete! Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1697414400 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.PDHZsZ + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf pynwb-2.5.0 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/pynwb-2.5.0.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd pynwb-2.5.0 + rm -rf /builddir/build/BUILD/pynwb-2.5.0-SPECPARTS + /usr/bin/mkdir -p /builddir/build/BUILD/pynwb-2.5.0-SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0001-Fix-warnings-from-tests-1778.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + sed -r -i 's@"coverage", "run", "-p"@"/usr/bin/python3"@' tests/validation/test_validate.py + sed -r -i 's/==.*//' requirements.txt + tee requirements-unpinned.txt + sed -r -i '1{s/^/from unittest import skip\n/}' tests/validation/test_validate.py + for n in test_validate_file_cached test_validate_file_cached_extension test_validate_file_cached_extension_pass_ns test_validate_file_cached_ignore test_validate_file_list_namespaces_core test_validate_file_list_namespaces_extension + sed -r -i 's/^([[:blank:]]*)(def test_validate_file_cached\()/\1@skip('\''Re-import issues'\'')\n\1\2/' tests/validation/test_validate.py + for n in test_validate_file_cached test_validate_file_cached_extension test_validate_file_cached_extension_pass_ns test_validate_file_cached_ignore test_validate_file_list_namespaces_core test_validate_file_list_namespaces_extension + sed -r -i 's/^([[:blank:]]*)(def test_validate_file_cached_extension\()/\1@skip('\''Re-import issues'\'')\n\1\2/' tests/validation/test_validate.py + for n in test_validate_file_cached test_validate_file_cached_extension test_validate_file_cached_extension_pass_ns test_validate_file_cached_ignore test_validate_file_list_namespaces_core test_validate_file_list_namespaces_extension + sed -r -i 's/^([[:blank:]]*)(def test_validate_file_cached_extension_pass_ns\()/\1@skip('\''Re-import issues'\'')\n\1\2/' tests/validation/test_validate.py + for n in test_validate_file_cached test_validate_file_cached_extension test_validate_file_cached_extension_pass_ns test_validate_file_cached_ignore test_validate_file_list_namespaces_core test_validate_file_list_namespaces_extension + sed -r -i 's/^([[:blank:]]*)(def test_validate_file_cached_ignore\()/\1@skip('\''Re-import issues'\'')\n\1\2/' tests/validation/test_validate.py + for n in test_validate_file_cached test_validate_file_cached_extension test_validate_file_cached_extension_pass_ns test_validate_file_cached_ignore test_validate_file_list_namespaces_core test_validate_file_list_namespaces_extension + sed -r -i 's/^([[:blank:]]*)(def test_validate_file_list_namespaces_core\()/\1@skip('\''Re-import issues'\'')\n\1\2/' tests/validation/test_validate.py + for n in test_validate_file_cached test_validate_file_cached_extension test_validate_file_cached_extension_pass_ns test_validate_file_cached_ignore test_validate_file_list_namespaces_core test_validate_file_list_namespaces_extension + sed -r -i 's/^([[:blank:]]*)(def test_validate_file_list_namespaces_extension\()/\1@skip('\''Re-import issues'\'')\n\1\2/' tests/validation/test_validate.py + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.05IiR4 + umask 022 + cd /builddir/build/BUILD + cd pynwb-2.5.0 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + echo 'python3dist(wheel)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/pynwb-2.5.0/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + TMPDIR=/builddir/build/BUILD/pynwb-2.5.0/.pyproject-builddir + RPM_TOXENV=py312 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/pynwb-2.5.0/pyproject-wheeldir --output /builddir/build/BUILD/python-pynwb-2.5.0-3.fc40.x86_64-pyproject-buildrequires requirements-unpinned.txt Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 68.2.2) Handling wheel from default build backend Requirement satisfied: wheel (installed: wheel 0.41.2) found these packages: ['pynwb', 'pynwb.testing', 'pynwb.legacy', 'pynwb.io', 'pynwb.testing.mock', 'pynwb.legacy.io'] ['h5py>=2.10', 'hdmf>=3.9.0', 'numpy>=1.16', 'pandas>=1.1.5', 'python-dateutil>=2.7.3', 'setuptools'] running egg_info writing src/pynwb.egg-info/PKG-INFO writing dependency_links to src/pynwb.egg-info/dependency_links.txt writing requirements to src/pynwb.egg-info/requires.txt writing top-level names to src/pynwb.egg-info/top_level.txt reading manifest file 'src/pynwb.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'src/pynwb.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.41.2) found these packages: ['pynwb', 'pynwb.testing', 'pynwb.legacy', 'pynwb.io', 'pynwb.testing.mock', 'pynwb.legacy.io'] ['h5py>=2.10', 'hdmf>=3.9.0', 'numpy>=1.16', 'pandas>=1.1.5', 'python-dateutil>=2.7.3', 'setuptools'] running dist_info creating pynwb.egg-info writing pynwb.egg-info/PKG-INFO writing dependency_links to pynwb.egg-info/dependency_links.txt writing requirements to pynwb.egg-info/requires.txt writing top-level names to pynwb.egg-info/top_level.txt writing manifest file 'pynwb.egg-info/SOURCES.txt' reading manifest file 'pynwb.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'pynwb.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/pynwb-2.5.0/pynwb-2.5.0.dist-info' Handling h5py >=2.10 from hook generated metadata: Requires-Dist (pynwb) Requirement not satisfied: h5py >=2.10 Handling hdmf >=3.9.0 from hook generated metadata: Requires-Dist (pynwb) Requirement not satisfied: hdmf >=3.9.0 Handling numpy >=1.16 from hook generated metadata: Requires-Dist (pynwb) Requirement not satisfied: numpy >=1.16 Handling pandas >=1.1.5 from hook generated metadata: Requires-Dist (pynwb) Requirement not satisfied: pandas >=1.1.5 Handling python-dateutil >=2.7.3 from hook generated metadata: Requires-Dist (pynwb) Requirement not satisfied: python-dateutil >=2.7.3 Handling setuptools from hook generated metadata: Requires-Dist (pynwb) Requirement satisfied: setuptools (installed: setuptools 68.2.2) + cat /builddir/build/BUILD/python-pynwb-2.5.0-3.fc40.x86_64-pyproject-buildrequires + rm -rfv pynwb-2.5.0.dist-info/ removed 'pynwb-2.5.0.dist-info/METADATA' removed 'pynwb-2.5.0.dist-info/top_level.txt' removed directory 'pynwb-2.5.0.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-pynwb-2.5.0-3.fc40.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 63 kB/s | 1.5 kB 00:00 fedora 295 kB/s | 20 kB 00:00 Package pyproject-rpm-macros-1.10.0-1.fc40.noarch is already installed. Package python3-devel-3.12.0-2.fc40.x86_64 is already installed. Package python3-devel-3.12.0-2.fc40.x86_64 is already installed. Package python3-pytest-7.4.3-1.fc40.noarch is already installed. Package python3-packaging-23.2-2.fc40.noarch is already installed. Package python3-pip-23.2.1-1.fc40.noarch is already installed. Package python3-setuptools-68.2.2-1.fc40.noarch is already installed. Package python3-setuptools-68.2.2-1.fc40.noarch is already installed. Package python3-wheel-1:0.41.2-1.fc40.noarch is already installed. Dependencies resolved. ================================================================================ Package Arch Version Repo Size ================================================================================ Installing: python3-dateutil noarch 1:2.8.2-11.fc40 copr_base 345 k python3-h5py x86_64 3.10.0-1.fc40 copr_base 1.1 M python3-hdmf noarch 3.11.0-1.fc40 copr_base 428 k python3-numpy x86_64 1:1.26.0-2.fc40 fedora 7.5 M python3-pandas x86_64 1.5.3-7.fc39~bootstrap fedora 7.3 M Installing dependencies: flexiblas x86_64 3.3.1-5.fc39 fedora 33 k flexiblas-netlib x86_64 3.3.1-5.fc39 fedora 3.1 M flexiblas-openblas-openmp x86_64 3.3.1-5.fc39 fedora 17 k hdf5 x86_64 1.12.1-15.fc40 fedora 2.2 M hdmf-common-schema noarch 1:1.8.0-2.fc40 fedora 16 k libaec x86_64 1.0.6-5.fc39 fedora 42 k libgfortran x86_64 13.2.1-5.fc40 fedora 906 k liblzf x86_64 3.6-26.fc39 fedora 28 k libquadmath x86_64 13.2.1-5.fc40 fedora 197 k openblas x86_64 0.3.24-1.fc40 fedora 37 k openblas-openmp x86_64 0.3.24-1.fc40 fedora 5.0 M python3-appdirs noarch 1.4.4-11.fc39 fedora 23 k python3-attrs noarch 23.1.0-4.fc39 fedora 123 k python3-cached_property noarch 1.5.2-11.fc39 fedora 20 k python3-charset-normalizer noarch 3.3.2-1.fc40 fedora 107 k python3-idna noarch 3.4-5.fc40 fedora 109 k python3-jsonschema noarch 4.19.1-1.fc40 fedora 203 k python3-jsonschema-specifications noarch 2023.11.1-1.fc40 copr_base 21 k python3-numpy-f2py x86_64 1:1.26.0-2.fc40 fedora 509 k python3-pooch noarch 1.5.2-13.fc40 copr_base 114 k python3-pytz noarch 2023.3.post1-1.fc40 fedora 64 k python3-referencing noarch 0.31.0-1.fc40 fedora 81 k python3-requests noarch 2.31.0-1.fc40 copr_base 142 k python3-rpds-py x86_64 0.12.0-1.fc40 fedora 281 k python3-ruamel-yaml noarch 0.18.5-1.fc40 fedora 302 k python3-ruamel-yaml-clib x86_64 0.2.7-3.fc39 fedora 144 k python3-scipy x86_64 1.11.1-1.fc39 fedora 16 M python3-six noarch 1.16.0-12.fc39 fedora 41 k python3-urllib3 noarch 1.26.18-1.fc40 fedora 274 k Transaction Summary ================================================================================ Install 34 Packages Total size: 46 M Total download size: 46 M Installed size: 219 M Downloading Packages: [SKIPPED] python3-requests-2.31.0-1.fc40.noarch.rpm: Already downloaded [SKIPPED] python3-charset-normalizer-3.3.2-1.fc40.noarch.rpm: Already downloaded [SKIPPED] python3-idna-3.4-5.fc40.noarch.rpm: Already downloaded [SKIPPED] python3-six-1.16.0-12.fc39.noarch.rpm: Already downloaded [SKIPPED] python3-urllib3-1.26.18-1.fc40.noarch.rpm: Already downloaded (6/34): python3-dateutil-2.8.2-11.fc40.noarch.r 18 MB/s | 345 kB 00:00 (7/34): python3-jsonschema-specifications-2023. 6.2 MB/s | 21 kB 00:00 (8/34): python3-h5py-3.10.0-1.fc40.x86_64.rpm 43 MB/s | 1.1 MB 00:00 (9/34): python3-pooch-1.5.2-13.fc40.noarch.rpm 32 MB/s | 114 kB 00:00 (10/34): python3-hdmf-3.11.0-1.fc40.noarch.rpm 11 MB/s | 428 kB 00:00 (11/34): flexiblas-3.3.1-5.fc39.x86_64.rpm 2.3 MB/s | 33 kB 00:00 (12/34): flexiblas-openblas-openmp-3.3.1-5.fc39 4.8 MB/s | 17 kB 00:00 (13/34): flexiblas-netlib-3.3.1-5.fc39.x86_64.r 134 MB/s | 3.1 MB 00:00 (14/34): hdf5-1.12.1-15.fc40.x86_64.rpm 123 MB/s | 2.2 MB 00:00 (15/34): hdmf-common-schema-1.8.0-2.fc40.noarch 943 kB/s | 16 kB 00:00 (16/34): libaec-1.0.6-5.fc39.x86_64.rpm 4.4 MB/s | 42 kB 00:00 (17/34): liblzf-3.6-26.fc39.x86_64.rpm 8.9 MB/s | 28 kB 00:00 (18/34): libquadmath-13.2.1-5.fc40.x86_64.rpm 39 MB/s | 197 kB 00:00 (19/34): libgfortran-13.2.1-5.fc40.x86_64.rpm 101 MB/s | 906 kB 00:00 (20/34): openblas-0.3.24-1.fc40.x86_64.rpm 6.1 MB/s | 37 kB 00:00 (21/34): python3-appdirs-1.4.4-11.fc39.noarch.r 3.0 MB/s | 23 kB 00:00 (22/34): python3-attrs-23.1.0-4.fc39.noarch.rpm 15 MB/s | 123 kB 00:00 (23/34): python3-cached_property-1.5.2-11.fc39. 4.5 MB/s | 20 kB 00:00 (24/34): python3-jsonschema-4.19.1-1.fc40.noarc 38 MB/s | 203 kB 00:00 (25/34): python3-numpy-f2py-1.26.0-2.fc40.x86_6 67 MB/s | 509 kB 00:00 (26/34): openblas-openmp-0.3.24-1.fc40.x86_64.r 94 MB/s | 5.0 MB 00:00 (27/34): python3-pytz-2023.3.post1-1.fc40.noarc 4.4 MB/s | 64 kB 00:00 (28/34): python3-numpy-1.26.0-2.fc40.x86_64.rpm 85 MB/s | 7.5 MB 00:00 (29/34): python3-referencing-0.31.0-1.fc40.noar 2.2 MB/s | 81 kB 00:00 (30/34): python3-ruamel-yaml-0.18.5-1.fc40.noar 24 MB/s | 302 kB 00:00 (31/34): python3-pandas-1.5.3-7.fc39~bootstrap. 71 MB/s | 7.3 MB 00:00 (32/34): python3-ruamel-yaml-clib-0.2.7-3.fc39. 10 MB/s | 144 kB 00:00 (33/34): python3-rpds-py-0.12.0-1.fc40.x86_64.r 6.8 MB/s | 281 kB 00:00 (34/34): python3-scipy-1.11.1-1.fc39.x86_64.rpm 106 MB/s | 16 MB 00:00 -------------------------------------------------------------------------------- Total 109 MB/s | 46 MB 00:00 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: python3-hdmf-3.11.0-1.fc40.noarch 1/1 Preparing : 1/1 Installing : libgfortran-13.2.1-5.fc40.x86_64 1/34 Installing : python3-ruamel-yaml-clib-0.2.7-3.fc39.x86_64 2/34 Installing : python3-ruamel-yaml-0.18.5-1.fc40.noarch 3/34 Installing : python3-six-1.16.0-12.fc39.noarch 4/34 Installing : python3-rpds-py-0.12.0-1.fc40.x86_64 5/34 Installing : python3-idna-3.4-5.fc40.noarch 6/34 Installing : python3-attrs-23.1.0-4.fc39.noarch 7/34 Installing : python3-referencing-0.31.0-1.fc40.noarch 8/34 Installing : python3-jsonschema-specifications-2023.11.1-1.fc40 9/34 Installing : python3-jsonschema-4.19.1-1.fc40.noarch 10/34 Installing : python3-urllib3-1.26.18-1.fc40.noarch 11/34 Installing : python3-dateutil-1:2.8.2-11.fc40.noarch 12/34 Installing : python3-pytz-2023.3.post1-1.fc40.noarch 13/34 Installing : python3-charset-normalizer-3.3.2-1.fc40.noarch 14/34 Installing : python3-requests-2.31.0-1.fc40.noarch 15/34 Installing : python3-cached_property-1.5.2-11.fc39.noarch 16/34 Installing : python3-appdirs-1.4.4-11.fc39.noarch 17/34 Installing : python3-pooch-1.5.2-13.fc40.noarch 18/34 Installing : openblas-0.3.24-1.fc40.x86_64 19/34 Installing : openblas-openmp-0.3.24-1.fc40.x86_64 20/34 Installing : libquadmath-13.2.1-5.fc40.x86_64 21/34 Installing : flexiblas-netlib-3.3.1-5.fc39.x86_64 22/34 Installing : flexiblas-openblas-openmp-3.3.1-5.fc39.x86_64 23/34 Installing : flexiblas-3.3.1-5.fc39.x86_64 24/34 Installing : python3-numpy-1:1.26.0-2.fc40.x86_64 25/34 Installing : python3-numpy-f2py-1:1.26.0-2.fc40.x86_64 26/34 Installing : python3-scipy-1.11.1-1.fc39.x86_64 27/34 Installing : python3-pandas-1.5.3-7.fc39~bootstrap.x86_64 28/34 Installing : liblzf-3.6-26.fc39.x86_64 29/34 Installing : libaec-1.0.6-5.fc39.x86_64 30/34 Installing : hdf5-1.12.1-15.fc40.x86_64 31/34 Installing : python3-h5py-3.10.0-1.fc40.x86_64 32/34 Installing : hdmf-common-schema-1:1.8.0-2.fc40.noarch 33/34 Installing : python3-hdmf-3.11.0-1.fc40.noarch 34/34 Running scriptlet: python3-hdmf-3.11.0-1.fc40.noarch 34/34 Installed: flexiblas-3.3.1-5.fc39.x86_64 flexiblas-netlib-3.3.1-5.fc39.x86_64 flexiblas-openblas-openmp-3.3.1-5.fc39.x86_64 hdf5-1.12.1-15.fc40.x86_64 hdmf-common-schema-1:1.8.0-2.fc40.noarch libaec-1.0.6-5.fc39.x86_64 libgfortran-13.2.1-5.fc40.x86_64 liblzf-3.6-26.fc39.x86_64 libquadmath-13.2.1-5.fc40.x86_64 openblas-0.3.24-1.fc40.x86_64 openblas-openmp-0.3.24-1.fc40.x86_64 python3-appdirs-1.4.4-11.fc39.noarch python3-attrs-23.1.0-4.fc39.noarch python3-cached_property-1.5.2-11.fc39.noarch python3-charset-normalizer-3.3.2-1.fc40.noarch python3-dateutil-1:2.8.2-11.fc40.noarch python3-h5py-3.10.0-1.fc40.x86_64 python3-hdmf-3.11.0-1.fc40.noarch python3-idna-3.4-5.fc40.noarch python3-jsonschema-4.19.1-1.fc40.noarch python3-jsonschema-specifications-2023.11.1-1.fc40.noarch python3-numpy-1:1.26.0-2.fc40.x86_64 python3-numpy-f2py-1:1.26.0-2.fc40.x86_64 python3-pandas-1.5.3-7.fc39~bootstrap.x86_64 python3-pooch-1.5.2-13.fc40.noarch python3-pytz-2023.3.post1-1.fc40.noarch python3-referencing-0.31.0-1.fc40.noarch python3-requests-2.31.0-1.fc40.noarch python3-rpds-py-0.12.0-1.fc40.x86_64 python3-ruamel-yaml-0.18.5-1.fc40.noarch python3-ruamel-yaml-clib-0.2.7-3.fc39.x86_64 python3-scipy-1.11.1-1.fc39.x86_64 python3-six-1.16.0-12.fc39.noarch python3-urllib3-1.26.18-1.fc40.noarch Complete! Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1697414400 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.hR4U8q + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf pynwb-2.5.0 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/pynwb-2.5.0.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd pynwb-2.5.0 + rm -rf /builddir/build/BUILD/pynwb-2.5.0-SPECPARTS + /usr/bin/mkdir -p /builddir/build/BUILD/pynwb-2.5.0-SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0001-Fix-warnings-from-tests-1778.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + sed -r -i 's@"coverage", "run", "-p"@"/usr/bin/python3"@' tests/validation/test_validate.py + sed -r -i 's/==.*//' requirements.txt + tee requirements-unpinned.txt + sed -r -i '1{s/^/from unittest import skip\n/}' tests/validation/test_validate.py + for n in test_validate_file_cached test_validate_file_cached_extension test_validate_file_cached_extension_pass_ns test_validate_file_cached_ignore test_validate_file_list_namespaces_core test_validate_file_list_namespaces_extension + sed -r -i 's/^([[:blank:]]*)(def test_validate_file_cached\()/\1@skip('\''Re-import issues'\'')\n\1\2/' tests/validation/test_validate.py + for n in test_validate_file_cached test_validate_file_cached_extension test_validate_file_cached_extension_pass_ns test_validate_file_cached_ignore test_validate_file_list_namespaces_core test_validate_file_list_namespaces_extension + sed -r -i 's/^([[:blank:]]*)(def test_validate_file_cached_extension\()/\1@skip('\''Re-import issues'\'')\n\1\2/' tests/validation/test_validate.py + for n in test_validate_file_cached test_validate_file_cached_extension test_validate_file_cached_extension_pass_ns test_validate_file_cached_ignore test_validate_file_list_namespaces_core test_validate_file_list_namespaces_extension + sed -r -i 's/^([[:blank:]]*)(def test_validate_file_cached_extension_pass_ns\()/\1@skip('\''Re-import issues'\'')\n\1\2/' tests/validation/test_validate.py + for n in test_validate_file_cached test_validate_file_cached_extension test_validate_file_cached_extension_pass_ns test_validate_file_cached_ignore test_validate_file_list_namespaces_core test_validate_file_list_namespaces_extension + sed -r -i 's/^([[:blank:]]*)(def test_validate_file_cached_ignore\()/\1@skip('\''Re-import issues'\'')\n\1\2/' tests/validation/test_validate.py + for n in test_validate_file_cached test_validate_file_cached_extension test_validate_file_cached_extension_pass_ns test_validate_file_cached_ignore test_validate_file_list_namespaces_core test_validate_file_list_namespaces_extension + sed -r -i 's/^([[:blank:]]*)(def test_validate_file_list_namespaces_core\()/\1@skip('\''Re-import issues'\'')\n\1\2/' tests/validation/test_validate.py + for n in test_validate_file_cached test_validate_file_cached_extension test_validate_file_cached_extension_pass_ns test_validate_file_cached_ignore test_validate_file_list_namespaces_core test_validate_file_list_namespaces_extension + sed -r -i 's/^([[:blank:]]*)(def test_validate_file_list_namespaces_extension\()/\1@skip('\''Re-import issues'\'')\n\1\2/' tests/validation/test_validate.py + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.2xrLgo + umask 022 + cd /builddir/build/BUILD + cd pynwb-2.5.0 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + echo 'python3dist(wheel)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/pynwb-2.5.0/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + TMPDIR=/builddir/build/BUILD/pynwb-2.5.0/.pyproject-builddir + RPM_TOXENV=py312 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/pynwb-2.5.0/pyproject-wheeldir --output /builddir/build/BUILD/python-pynwb-2.5.0-3.fc40.x86_64-pyproject-buildrequires requirements-unpinned.txt Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 68.2.2) Handling wheel from default build backend Requirement satisfied: wheel (installed: wheel 0.41.2) found these packages: ['pynwb', 'pynwb.testing', 'pynwb.legacy', 'pynwb.io', 'pynwb.testing.mock', 'pynwb.legacy.io'] ['h5py>=2.10', 'hdmf>=3.9.0', 'numpy>=1.16', 'pandas>=1.1.5', 'python-dateutil>=2.7.3', 'setuptools'] running egg_info writing src/pynwb.egg-info/PKG-INFO writing dependency_links to src/pynwb.egg-info/dependency_links.txt writing requirements to src/pynwb.egg-info/requires.txt writing top-level names to src/pynwb.egg-info/top_level.txt reading manifest file 'src/pynwb.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'src/pynwb.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.41.2) found these packages: ['pynwb', 'pynwb.testing', 'pynwb.legacy', 'pynwb.io', 'pynwb.testing.mock', 'pynwb.legacy.io'] ['h5py>=2.10', 'hdmf>=3.9.0', 'numpy>=1.16', 'pandas>=1.1.5', 'python-dateutil>=2.7.3', 'setuptools'] running dist_info creating pynwb.egg-info writing pynwb.egg-info/PKG-INFO writing dependency_links to pynwb.egg-info/dependency_links.txt writing requirements to pynwb.egg-info/requires.txt writing top-level names to pynwb.egg-info/top_level.txt writing manifest file 'pynwb.egg-info/SOURCES.txt' reading manifest file 'pynwb.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'pynwb.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/pynwb-2.5.0/pynwb-2.5.0.dist-info' Handling h5py >=2.10 from hook generated metadata: Requires-Dist (pynwb) Requirement satisfied: h5py >=2.10 (installed: h5py 3.10.0) Handling hdmf >=3.9.0 from hook generated metadata: Requires-Dist (pynwb) Requirement satisfied: hdmf >=3.9.0 (installed: hdmf 3.11.0) Handling numpy >=1.16 from hook generated metadata: Requires-Dist (pynwb) Requirement satisfied: numpy >=1.16 (installed: numpy 1.26.0) Handling pandas >=1.1.5 from hook generated metadata: Requires-Dist (pynwb) Requirement satisfied: pandas >=1.1.5 (installed: pandas 1.5.3) Handling python-dateutil >=2.7.3 from hook generated metadata: Requires-Dist (pynwb) Requirement satisfied: python-dateutil >=2.7.3 (installed: python-dateutil 2.8.2) Handling setuptools from hook generated metadata: Requires-Dist (pynwb) Requirement satisfied: setuptools (installed: setuptools 68.2.2) + cat /builddir/build/BUILD/python-pynwb-2.5.0-3.fc40.x86_64-pyproject-buildrequires + rm -rfv pynwb-2.5.0.dist-info/ removed 'pynwb-2.5.0.dist-info/METADATA' removed 'pynwb-2.5.0.dist-info/top_level.txt' removed directory 'pynwb-2.5.0.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-pynwb-2.5.0-3.fc40.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 71 kB/s | 1.5 kB 00:00 Copr repository 62 MB/s | 5.2 MB 00:00 fedora 67 kB/s | 20 kB 00:00 Package pyproject-rpm-macros-1.10.0-1.fc40.noarch is already installed. Package python3-devel-3.12.0-2.fc40.x86_64 is already installed. Package python3-devel-3.12.0-2.fc40.x86_64 is already installed. Package python3-pytest-7.4.3-1.fc40.noarch is already installed. Package python3-h5py-3.10.0-1.fc40.x86_64 is already installed. Package python3-hdmf-3.11.0-1.fc40.noarch is already installed. Package python3-numpy-1:1.26.0-2.fc40.x86_64 is already installed. Package python3-packaging-23.2-2.fc40.noarch is already installed. Package python3-pandas-1.5.3-7.fc39~bootstrap.x86_64 is already installed. Package python3-pip-23.2.1-1.fc40.noarch is already installed. Package python3-dateutil-1:2.8.2-11.fc40.noarch is already installed. Package python3-setuptools-68.2.2-1.fc40.noarch is already installed. Package python3-setuptools-68.2.2-1.fc40.noarch is already installed. Package python3-wheel-1:0.41.2-1.fc40.noarch is already installed. Dependencies resolved. Nothing to do. Complete! Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1697414400 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.kX36AQ + umask 022 + cd /builddir/build/BUILD + cd pynwb-2.5.0 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + echo 'python3dist(wheel)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/pynwb-2.5.0/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + TMPDIR=/builddir/build/BUILD/pynwb-2.5.0/.pyproject-builddir + RPM_TOXENV=py312 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/pynwb-2.5.0/pyproject-wheeldir --output /builddir/build/BUILD/python-pynwb-2.5.0-3.fc40.x86_64-pyproject-buildrequires requirements-unpinned.txt Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 68.2.2) Handling wheel from default build backend Requirement satisfied: wheel (installed: wheel 0.41.2) found these packages: ['pynwb', 'pynwb.testing', 'pynwb.legacy', 'pynwb.io', 'pynwb.testing.mock', 'pynwb.legacy.io'] ['h5py>=2.10', 'hdmf>=3.9.0', 'numpy>=1.16', 'pandas>=1.1.5', 'python-dateutil>=2.7.3', 'setuptools'] running egg_info writing src/pynwb.egg-info/PKG-INFO writing dependency_links to src/pynwb.egg-info/dependency_links.txt writing requirements to src/pynwb.egg-info/requires.txt writing top-level names to src/pynwb.egg-info/top_level.txt reading manifest file 'src/pynwb.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'src/pynwb.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.41.2) found these packages: ['pynwb', 'pynwb.testing', 'pynwb.legacy', 'pynwb.io', 'pynwb.testing.mock', 'pynwb.legacy.io'] ['h5py>=2.10', 'hdmf>=3.9.0', 'numpy>=1.16', 'pandas>=1.1.5', 'python-dateutil>=2.7.3', 'setuptools'] running dist_info writing pynwb.egg-info/PKG-INFO writing dependency_links to pynwb.egg-info/dependency_links.txt writing requirements to pynwb.egg-info/requires.txt writing top-level names to pynwb.egg-info/top_level.txt reading manifest file 'pynwb.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'pynwb.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/pynwb-2.5.0/pynwb-2.5.0.dist-info' Handling h5py >=2.10 from hook generated metadata: Requires-Dist (pynwb) Requirement satisfied: h5py >=2.10 (installed: h5py 3.10.0) Handling hdmf >=3.9.0 from hook generated metadata: Requires-Dist (pynwb) Requirement satisfied: hdmf >=3.9.0 (installed: hdmf 3.11.0) Handling numpy >=1.16 from hook generated metadata: Requires-Dist (pynwb) Requirement satisfied: numpy >=1.16 (installed: numpy 1.26.0) Handling pandas >=1.1.5 from hook generated metadata: Requires-Dist (pynwb) Requirement satisfied: pandas >=1.1.5 (installed: pandas 1.5.3) Handling python-dateutil >=2.7.3 from hook generated metadata: Requires-Dist (pynwb) Requirement satisfied: python-dateutil >=2.7.3 (installed: python-dateutil 2.8.2) Handling setuptools from hook generated metadata: Requires-Dist (pynwb) Requirement satisfied: setuptools (installed: setuptools 68.2.2) + cat /builddir/build/BUILD/python-pynwb-2.5.0-3.fc40.x86_64-pyproject-buildrequires + rm -rfv pynwb-2.5.0.dist-info/ removed 'pynwb-2.5.0.dist-info/METADATA' removed 'pynwb-2.5.0.dist-info/top_level.txt' removed directory 'pynwb-2.5.0.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.34pTW7 + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd pynwb-2.5.0 + mkdir -p /builddir/build/BUILD/pynwb-2.5.0/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + TMPDIR=/builddir/build/BUILD/pynwb-2.5.0/.pyproject-builddir + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_wheel.py /builddir/build/BUILD/pynwb-2.5.0/pyproject-wheeldir Processing /builddir/build/BUILD/pynwb-2.5.0 Preparing metadata (pyproject.toml): started Running command Preparing metadata (pyproject.toml) found these packages: ['pynwb', 'pynwb.testing', 'pynwb.legacy', 'pynwb.io', 'pynwb.testing.mock', 'pynwb.legacy.io'] ['h5py>=2.10', 'hdmf>=3.9.0', 'numpy>=1.16', 'pandas>=1.1.5', 'python-dateutil>=2.7.3', 'setuptools'] running dist_info creating /builddir/build/BUILD/pynwb-2.5.0/.pyproject-builddir/pip-modern-metadata-t_pwpjin/pynwb.egg-info writing /builddir/build/BUILD/pynwb-2.5.0/.pyproject-builddir/pip-modern-metadata-t_pwpjin/pynwb.egg-info/PKG-INFO writing dependency_links to /builddir/build/BUILD/pynwb-2.5.0/.pyproject-builddir/pip-modern-metadata-t_pwpjin/pynwb.egg-info/dependency_links.txt writing requirements to /builddir/build/BUILD/pynwb-2.5.0/.pyproject-builddir/pip-modern-metadata-t_pwpjin/pynwb.egg-info/requires.txt writing top-level names to /builddir/build/BUILD/pynwb-2.5.0/.pyproject-builddir/pip-modern-metadata-t_pwpjin/pynwb.egg-info/top_level.txt writing manifest file '/builddir/build/BUILD/pynwb-2.5.0/.pyproject-builddir/pip-modern-metadata-t_pwpjin/pynwb.egg-info/SOURCES.txt' reading manifest file '/builddir/build/BUILD/pynwb-2.5.0/.pyproject-builddir/pip-modern-metadata-t_pwpjin/pynwb.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file '/builddir/build/BUILD/pynwb-2.5.0/.pyproject-builddir/pip-modern-metadata-t_pwpjin/pynwb.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/pynwb-2.5.0/.pyproject-builddir/pip-modern-metadata-t_pwpjin/pynwb-2.5.0.dist-info' Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: pynwb Building wheel for pynwb (pyproject.toml): started Running command Building wheel for pynwb (pyproject.toml) found these packages: ['pynwb', 'pynwb.testing', 'pynwb.legacy', 'pynwb.io', 'pynwb.testing.mock', 'pynwb.legacy.io'] ['h5py>=2.10', 'hdmf>=3.9.0', 'numpy>=1.16', 'pandas>=1.1.5', 'python-dateutil>=2.7.3', 'setuptools'] running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/pynwb copying src/pynwb/validate.py -> build/lib/pynwb copying src/pynwb/spec.py -> build/lib/pynwb copying src/pynwb/retinotopy.py -> build/lib/pynwb copying src/pynwb/resources.py -> build/lib/pynwb copying src/pynwb/ophys.py -> build/lib/pynwb copying src/pynwb/ogen.py -> build/lib/pynwb copying src/pynwb/misc.py -> build/lib/pynwb copying src/pynwb/image.py -> build/lib/pynwb copying src/pynwb/icephys.py -> build/lib/pynwb copying src/pynwb/file.py -> build/lib/pynwb copying src/pynwb/epoch.py -> build/lib/pynwb copying src/pynwb/ecephys.py -> build/lib/pynwb copying src/pynwb/device.py -> build/lib/pynwb copying src/pynwb/core.py -> build/lib/pynwb copying src/pynwb/behavior.py -> build/lib/pynwb copying src/pynwb/base.py -> build/lib/pynwb copying src/pynwb/_version.py -> build/lib/pynwb copying src/pynwb/_due.py -> build/lib/pynwb copying src/pynwb/__init__.py -> build/lib/pynwb creating build/lib/pynwb/testing copying src/pynwb/testing/utils.py -> build/lib/pynwb/testing copying src/pynwb/testing/testh5io.py -> build/lib/pynwb/testing copying src/pynwb/testing/make_test_files.py -> build/lib/pynwb/testing copying src/pynwb/testing/icephys_testutils.py -> build/lib/pynwb/testing copying src/pynwb/testing/__init__.py -> build/lib/pynwb/testing creating build/lib/pynwb/legacy copying src/pynwb/legacy/map.py -> build/lib/pynwb/legacy copying src/pynwb/legacy/__init__.py -> build/lib/pynwb/legacy creating build/lib/pynwb/io copying src/pynwb/io/utils.py -> build/lib/pynwb/io copying src/pynwb/io/retinotopy.py -> build/lib/pynwb/io copying src/pynwb/io/ophys.py -> build/lib/pynwb/io copying src/pynwb/io/ogen.py -> build/lib/pynwb/io copying src/pynwb/io/misc.py -> build/lib/pynwb/io copying src/pynwb/io/image.py -> build/lib/pynwb/io copying src/pynwb/io/icephys.py -> build/lib/pynwb/io copying src/pynwb/io/file.py -> build/lib/pynwb/io copying src/pynwb/io/epoch.py -> build/lib/pynwb/io copying src/pynwb/io/ecephys.py -> build/lib/pynwb/io copying src/pynwb/io/core.py -> build/lib/pynwb/io copying src/pynwb/io/behavior.py -> build/lib/pynwb/io copying src/pynwb/io/base.py -> build/lib/pynwb/io copying src/pynwb/io/__init__.py -> build/lib/pynwb/io creating build/lib/pynwb/testing/mock copying src/pynwb/testing/mock/ophys.py -> build/lib/pynwb/testing/mock copying src/pynwb/testing/mock/utils.py -> build/lib/pynwb/testing/mock copying src/pynwb/testing/mock/ogen.py -> build/lib/pynwb/testing/mock copying src/pynwb/testing/mock/icephys.py -> build/lib/pynwb/testing/mock copying src/pynwb/testing/mock/file.py -> build/lib/pynwb/testing/mock copying src/pynwb/testing/mock/ecephys.py -> build/lib/pynwb/testing/mock copying src/pynwb/testing/mock/device.py -> build/lib/pynwb/testing/mock copying src/pynwb/testing/mock/behavior.py -> build/lib/pynwb/testing/mock copying src/pynwb/testing/mock/base.py -> build/lib/pynwb/testing/mock copying src/pynwb/testing/mock/__init__.py -> build/lib/pynwb/testing/mock creating build/lib/pynwb/legacy/io copying src/pynwb/legacy/io/retinotopy.py -> build/lib/pynwb/legacy/io copying src/pynwb/legacy/io/ophys.py -> build/lib/pynwb/legacy/io copying src/pynwb/legacy/io/ogen.py -> build/lib/pynwb/legacy/io copying src/pynwb/legacy/io/misc.py -> build/lib/pynwb/legacy/io copying src/pynwb/legacy/io/image.py -> build/lib/pynwb/legacy/io copying src/pynwb/legacy/io/icephys.py -> build/lib/pynwb/legacy/io copying src/pynwb/legacy/io/file.py -> build/lib/pynwb/legacy/io copying src/pynwb/legacy/io/epoch.py -> build/lib/pynwb/legacy/io copying src/pynwb/legacy/io/ecephys.py -> build/lib/pynwb/legacy/io copying src/pynwb/legacy/io/behavior.py -> build/lib/pynwb/legacy/io copying src/pynwb/legacy/io/base.py -> build/lib/pynwb/legacy/io copying src/pynwb/legacy/io/__init__.py -> build/lib/pynwb/legacy/io creating build/lib/pynwb/nwb-schema creating build/lib/pynwb/nwb-schema/core copying src/pynwb/nwb-schema/core/nwb.retinotopy.yaml -> build/lib/pynwb/nwb-schema/core copying src/pynwb/nwb-schema/core/nwb.ophys.yaml -> build/lib/pynwb/nwb-schema/core copying src/pynwb/nwb-schema/core/nwb.ogen.yaml -> build/lib/pynwb/nwb-schema/core copying src/pynwb/nwb-schema/core/nwb.namespace.yaml -> build/lib/pynwb/nwb-schema/core copying src/pynwb/nwb-schema/core/nwb.misc.yaml -> build/lib/pynwb/nwb-schema/core copying src/pynwb/nwb-schema/core/nwb.image.yaml -> build/lib/pynwb/nwb-schema/core copying src/pynwb/nwb-schema/core/nwb.icephys.yaml -> build/lib/pynwb/nwb-schema/core copying src/pynwb/nwb-schema/core/nwb.file.yaml -> build/lib/pynwb/nwb-schema/core copying src/pynwb/nwb-schema/core/nwb.epoch.yaml -> build/lib/pynwb/nwb-schema/core copying src/pynwb/nwb-schema/core/nwb.ecephys.yaml -> build/lib/pynwb/nwb-schema/core copying src/pynwb/nwb-schema/core/nwb.device.yaml -> build/lib/pynwb/nwb-schema/core copying src/pynwb/nwb-schema/core/nwb.behavior.yaml -> build/lib/pynwb/nwb-schema/core copying src/pynwb/nwb-schema/core/nwb.base.yaml -> build/lib/pynwb/nwb-schema/core UPDATING build/lib/pynwb/_version.py set build/lib/pynwb/_version.py to '2.5.0' installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/pynwb copying build/lib/pynwb/_version.py -> build/bdist.linux-x86_64/wheel/pynwb creating build/bdist.linux-x86_64/wheel/pynwb/nwb-schema creating build/bdist.linux-x86_64/wheel/pynwb/nwb-schema/core copying build/lib/pynwb/nwb-schema/core/nwb.base.yaml -> build/bdist.linux-x86_64/wheel/pynwb/nwb-schema/core copying build/lib/pynwb/nwb-schema/core/nwb.behavior.yaml -> build/bdist.linux-x86_64/wheel/pynwb/nwb-schema/core copying build/lib/pynwb/nwb-schema/core/nwb.device.yaml -> build/bdist.linux-x86_64/wheel/pynwb/nwb-schema/core copying build/lib/pynwb/nwb-schema/core/nwb.ecephys.yaml -> build/bdist.linux-x86_64/wheel/pynwb/nwb-schema/core copying build/lib/pynwb/nwb-schema/core/nwb.epoch.yaml -> build/bdist.linux-x86_64/wheel/pynwb/nwb-schema/core copying build/lib/pynwb/nwb-schema/core/nwb.file.yaml -> build/bdist.linux-x86_64/wheel/pynwb/nwb-schema/core copying build/lib/pynwb/nwb-schema/core/nwb.icephys.yaml -> build/bdist.linux-x86_64/wheel/pynwb/nwb-schema/core copying build/lib/pynwb/nwb-schema/core/nwb.image.yaml -> build/bdist.linux-x86_64/wheel/pynwb/nwb-schema/core copying build/lib/pynwb/nwb-schema/core/nwb.misc.yaml -> build/bdist.linux-x86_64/wheel/pynwb/nwb-schema/core copying build/lib/pynwb/nwb-schema/core/nwb.namespace.yaml -> build/bdist.linux-x86_64/wheel/pynwb/nwb-schema/core copying build/lib/pynwb/nwb-schema/core/nwb.ogen.yaml -> build/bdist.linux-x86_64/wheel/pynwb/nwb-schema/core copying build/lib/pynwb/nwb-schema/core/nwb.ophys.yaml -> build/bdist.linux-x86_64/wheel/pynwb/nwb-schema/core copying build/lib/pynwb/nwb-schema/core/nwb.retinotopy.yaml -> build/bdist.linux-x86_64/wheel/pynwb/nwb-schema/core creating build/bdist.linux-x86_64/wheel/pynwb/io copying build/lib/pynwb/io/__init__.py -> build/bdist.linux-x86_64/wheel/pynwb/io copying build/lib/pynwb/io/base.py -> build/bdist.linux-x86_64/wheel/pynwb/io copying build/lib/pynwb/io/behavior.py -> build/bdist.linux-x86_64/wheel/pynwb/io copying build/lib/pynwb/io/core.py -> build/bdist.linux-x86_64/wheel/pynwb/io copying build/lib/pynwb/io/ecephys.py -> build/bdist.linux-x86_64/wheel/pynwb/io copying build/lib/pynwb/io/epoch.py -> build/bdist.linux-x86_64/wheel/pynwb/io copying build/lib/pynwb/io/file.py -> build/bdist.linux-x86_64/wheel/pynwb/io copying build/lib/pynwb/io/icephys.py -> build/bdist.linux-x86_64/wheel/pynwb/io copying build/lib/pynwb/io/image.py -> build/bdist.linux-x86_64/wheel/pynwb/io copying build/lib/pynwb/io/misc.py -> build/bdist.linux-x86_64/wheel/pynwb/io copying build/lib/pynwb/io/ogen.py -> build/bdist.linux-x86_64/wheel/pynwb/io copying build/lib/pynwb/io/ophys.py -> build/bdist.linux-x86_64/wheel/pynwb/io copying build/lib/pynwb/io/retinotopy.py -> build/bdist.linux-x86_64/wheel/pynwb/io copying build/lib/pynwb/io/utils.py -> build/bdist.linux-x86_64/wheel/pynwb/io creating build/bdist.linux-x86_64/wheel/pynwb/legacy creating build/bdist.linux-x86_64/wheel/pynwb/legacy/io copying build/lib/pynwb/legacy/io/__init__.py -> build/bdist.linux-x86_64/wheel/pynwb/legacy/io copying build/lib/pynwb/legacy/io/base.py -> build/bdist.linux-x86_64/wheel/pynwb/legacy/io copying build/lib/pynwb/legacy/io/behavior.py -> build/bdist.linux-x86_64/wheel/pynwb/legacy/io copying build/lib/pynwb/legacy/io/ecephys.py -> build/bdist.linux-x86_64/wheel/pynwb/legacy/io copying build/lib/pynwb/legacy/io/epoch.py -> build/bdist.linux-x86_64/wheel/pynwb/legacy/io copying build/lib/pynwb/legacy/io/file.py -> build/bdist.linux-x86_64/wheel/pynwb/legacy/io copying build/lib/pynwb/legacy/io/icephys.py -> build/bdist.linux-x86_64/wheel/pynwb/legacy/io copying build/lib/pynwb/legacy/io/image.py -> build/bdist.linux-x86_64/wheel/pynwb/legacy/io copying build/lib/pynwb/legacy/io/misc.py -> build/bdist.linux-x86_64/wheel/pynwb/legacy/io copying build/lib/pynwb/legacy/io/ogen.py -> build/bdist.linux-x86_64/wheel/pynwb/legacy/io copying build/lib/pynwb/legacy/io/ophys.py -> build/bdist.linux-x86_64/wheel/pynwb/legacy/io copying build/lib/pynwb/legacy/io/retinotopy.py -> build/bdist.linux-x86_64/wheel/pynwb/legacy/io copying build/lib/pynwb/legacy/__init__.py -> build/bdist.linux-x86_64/wheel/pynwb/legacy copying build/lib/pynwb/legacy/map.py -> build/bdist.linux-x86_64/wheel/pynwb/legacy creating build/bdist.linux-x86_64/wheel/pynwb/testing creating build/bdist.linux-x86_64/wheel/pynwb/testing/mock copying build/lib/pynwb/testing/mock/__init__.py -> build/bdist.linux-x86_64/wheel/pynwb/testing/mock copying build/lib/pynwb/testing/mock/base.py -> build/bdist.linux-x86_64/wheel/pynwb/testing/mock copying build/lib/pynwb/testing/mock/behavior.py -> build/bdist.linux-x86_64/wheel/pynwb/testing/mock copying build/lib/pynwb/testing/mock/device.py -> build/bdist.linux-x86_64/wheel/pynwb/testing/mock copying build/lib/pynwb/testing/mock/ecephys.py -> build/bdist.linux-x86_64/wheel/pynwb/testing/mock copying build/lib/pynwb/testing/mock/file.py -> build/bdist.linux-x86_64/wheel/pynwb/testing/mock copying build/lib/pynwb/testing/mock/icephys.py -> build/bdist.linux-x86_64/wheel/pynwb/testing/mock copying build/lib/pynwb/testing/mock/ogen.py -> build/bdist.linux-x86_64/wheel/pynwb/testing/mock copying build/lib/pynwb/testing/mock/utils.py -> build/bdist.linux-x86_64/wheel/pynwb/testing/mock copying build/lib/pynwb/testing/mock/ophys.py -> build/bdist.linux-x86_64/wheel/pynwb/testing/mock copying build/lib/pynwb/testing/__init__.py -> build/bdist.linux-x86_64/wheel/pynwb/testing copying build/lib/pynwb/testing/icephys_testutils.py -> build/bdist.linux-x86_64/wheel/pynwb/testing copying build/lib/pynwb/testing/make_test_files.py -> build/bdist.linux-x86_64/wheel/pynwb/testing copying build/lib/pynwb/testing/testh5io.py -> build/bdist.linux-x86_64/wheel/pynwb/testing copying build/lib/pynwb/testing/utils.py -> build/bdist.linux-x86_64/wheel/pynwb/testing copying build/lib/pynwb/__init__.py -> build/bdist.linux-x86_64/wheel/pynwb copying build/lib/pynwb/_due.py -> build/bdist.linux-x86_64/wheel/pynwb copying build/lib/pynwb/base.py -> build/bdist.linux-x86_64/wheel/pynwb copying build/lib/pynwb/behavior.py -> build/bdist.linux-x86_64/wheel/pynwb copying build/lib/pynwb/core.py -> build/bdist.linux-x86_64/wheel/pynwb copying build/lib/pynwb/device.py -> build/bdist.linux-x86_64/wheel/pynwb copying build/lib/pynwb/ecephys.py -> build/bdist.linux-x86_64/wheel/pynwb copying build/lib/pynwb/epoch.py -> build/bdist.linux-x86_64/wheel/pynwb copying build/lib/pynwb/file.py -> build/bdist.linux-x86_64/wheel/pynwb copying build/lib/pynwb/icephys.py -> build/bdist.linux-x86_64/wheel/pynwb copying build/lib/pynwb/image.py -> build/bdist.linux-x86_64/wheel/pynwb copying build/lib/pynwb/misc.py -> build/bdist.linux-x86_64/wheel/pynwb copying build/lib/pynwb/ogen.py -> build/bdist.linux-x86_64/wheel/pynwb copying build/lib/pynwb/ophys.py -> build/bdist.linux-x86_64/wheel/pynwb copying build/lib/pynwb/resources.py -> build/bdist.linux-x86_64/wheel/pynwb copying build/lib/pynwb/retinotopy.py -> build/bdist.linux-x86_64/wheel/pynwb copying build/lib/pynwb/spec.py -> build/bdist.linux-x86_64/wheel/pynwb copying build/lib/pynwb/validate.py -> build/bdist.linux-x86_64/wheel/pynwb running install_egg_info running egg_info writing src/pynwb.egg-info/PKG-INFO writing dependency_links to src/pynwb.egg-info/dependency_links.txt writing requirements to src/pynwb.egg-info/requires.txt writing top-level names to src/pynwb.egg-info/top_level.txt reading manifest file 'src/pynwb.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'src/pynwb.egg-info/SOURCES.txt' Copying src/pynwb.egg-info to build/bdist.linux-x86_64/wheel/pynwb-2.5.0-py3.12.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/pynwb-2.5.0.dist-info/WHEEL creating '/builddir/build/BUILD/pynwb-2.5.0/.pyproject-builddir/pip-wheel-75qf_khz/.tmp-v2p58oz6/pynwb-2.5.0-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'pynwb/__init__.py' adding 'pynwb/_due.py' adding 'pynwb/_version.py' adding 'pynwb/base.py' adding 'pynwb/behavior.py' adding 'pynwb/core.py' adding 'pynwb/device.py' adding 'pynwb/ecephys.py' adding 'pynwb/epoch.py' adding 'pynwb/file.py' adding 'pynwb/icephys.py' adding 'pynwb/image.py' adding 'pynwb/misc.py' adding 'pynwb/ogen.py' adding 'pynwb/ophys.py' adding 'pynwb/resources.py' adding 'pynwb/retinotopy.py' adding 'pynwb/spec.py' adding 'pynwb/validate.py' adding 'pynwb/io/__init__.py' adding 'pynwb/io/base.py' adding 'pynwb/io/behavior.py' adding 'pynwb/io/core.py' adding 'pynwb/io/ecephys.py' adding 'pynwb/io/epoch.py' adding 'pynwb/io/file.py' adding 'pynwb/io/icephys.py' adding 'pynwb/io/image.py' adding 'pynwb/io/misc.py' adding 'pynwb/io/ogen.py' adding 'pynwb/io/ophys.py' adding 'pynwb/io/retinotopy.py' adding 'pynwb/io/utils.py' adding 'pynwb/legacy/__init__.py' adding 'pynwb/legacy/map.py' adding 'pynwb/legacy/io/__init__.py' adding 'pynwb/legacy/io/base.py' adding 'pynwb/legacy/io/behavior.py' adding 'pynwb/legacy/io/ecephys.py' adding 'pynwb/legacy/io/epoch.py' adding 'pynwb/legacy/io/file.py' adding 'pynwb/legacy/io/icephys.py' adding 'pynwb/legacy/io/image.py' adding 'pynwb/legacy/io/misc.py' adding 'pynwb/legacy/io/ogen.py' adding 'pynwb/legacy/io/ophys.py' adding 'pynwb/legacy/io/retinotopy.py' adding 'pynwb/nwb-schema/core/nwb.base.yaml' adding 'pynwb/nwb-schema/core/nwb.behavior.yaml' adding 'pynwb/nwb-schema/core/nwb.device.yaml' adding 'pynwb/nwb-schema/core/nwb.ecephys.yaml' adding 'pynwb/nwb-schema/core/nwb.epoch.yaml' adding 'pynwb/nwb-schema/core/nwb.file.yaml' adding 'pynwb/nwb-schema/core/nwb.icephys.yaml' adding 'pynwb/nwb-schema/core/nwb.image.yaml' adding 'pynwb/nwb-schema/core/nwb.misc.yaml' adding 'pynwb/nwb-schema/core/nwb.namespace.yaml' adding 'pynwb/nwb-schema/core/nwb.ogen.yaml' adding 'pynwb/nwb-schema/core/nwb.ophys.yaml' adding 'pynwb/nwb-schema/core/nwb.retinotopy.yaml' adding 'pynwb/testing/__init__.py' adding 'pynwb/testing/icephys_testutils.py' adding 'pynwb/testing/make_test_files.py' adding 'pynwb/testing/testh5io.py' adding 'pynwb/testing/utils.py' adding 'pynwb/testing/mock/__init__.py' adding 'pynwb/testing/mock/base.py' adding 'pynwb/testing/mock/behavior.py' adding 'pynwb/testing/mock/device.py' adding 'pynwb/testing/mock/ecephys.py' adding 'pynwb/testing/mock/file.py' adding 'pynwb/testing/mock/icephys.py' adding 'pynwb/testing/mock/ogen.py' adding 'pynwb/testing/mock/ophys.py' adding 'pynwb/testing/mock/utils.py' adding 'pynwb-2.5.0.dist-info/METADATA' adding 'pynwb-2.5.0.dist-info/WHEEL' adding 'pynwb-2.5.0.dist-info/top_level.txt' adding 'pynwb-2.5.0.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Building wheel for pynwb (pyproject.toml): finished with status 'done' Created wheel for pynwb: filename=pynwb-2.5.0-py3-none-any.whl size=134111 sha256=b06336667d0749fda475d54436dd221d7d6143e8eb2a037429ad077466b99f7e Stored in directory: /builddir/.cache/pip/wheels/58/ec/5f/a7ab6a9780ebfe545ee4d04d88fcf2bfb2887fe86920c88f4b Successfully built pynwb + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.2M0CaM + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/python-pynwb-2.5.0-3.fc40.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/python-pynwb-2.5.0-3.fc40.x86_64 ++ dirname /builddir/build/BUILDROOT/python-pynwb-2.5.0-3.fc40.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/python-pynwb-2.5.0-3.fc40.x86_64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd pynwb-2.5.0 ++ ls /builddir/build/BUILD/pynwb-2.5.0/pyproject-wheeldir/pynwb-2.5.0-py3-none-any.whl ++ xargs basename --multiple ++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/' + specifier=pynwb==2.5.0 + TMPDIR=/builddir/build/BUILD/pynwb-2.5.0/.pyproject-builddir + /usr/bin/python3 -m pip install --root /builddir/build/BUILDROOT/python-pynwb-2.5.0-3.fc40.x86_64 --prefix /usr --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/pynwb-2.5.0/pyproject-wheeldir pynwb==2.5.0 Using pip 23.2.1 from /usr/lib/python3.12/site-packages/pip (python 3.12) Looking in links: /builddir/build/BUILD/pynwb-2.5.0/pyproject-wheeldir Processing ./pyproject-wheeldir/pynwb-2.5.0-py3-none-any.whl Installing collected packages: pynwb Successfully installed pynwb-2.5.0 + '[' -d /builddir/build/BUILDROOT/python-pynwb-2.5.0-3.fc40.x86_64/usr/bin ']' + rm -f /builddir/build/BUILD/python-pynwb-2.5.0-3.fc40.x86_64-pyproject-ghost-distinfo + site_dirs=() + '[' -d /builddir/build/BUILDROOT/python-pynwb-2.5.0-3.fc40.x86_64/usr/lib/python3.12/site-packages ']' + site_dirs+=("/usr/lib/python3.12/site-packages") + '[' /builddir/build/BUILDROOT/python-pynwb-2.5.0-3.fc40.x86_64/usr/lib64/python3.12/site-packages '!=' /builddir/build/BUILDROOT/python-pynwb-2.5.0-3.fc40.x86_64/usr/lib/python3.12/site-packages ']' + '[' -d /builddir/build/BUILDROOT/python-pynwb-2.5.0-3.fc40.x86_64/usr/lib64/python3.12/site-packages ']' + for site_dir in ${site_dirs[@]} + for distinfo in /builddir/build/BUILDROOT/python-pynwb-2.5.0-3.fc40.x86_64$site_dir/*.dist-info + echo '%ghost /usr/lib/python3.12/site-packages/pynwb-2.5.0.dist-info' + sed -i s/pip/rpm/ /builddir/build/BUILDROOT/python-pynwb-2.5.0-3.fc40.x86_64/usr/lib/python3.12/site-packages/pynwb-2.5.0.dist-info/INSTALLER + PYTHONPATH=/usr/lib/rpm/redhat + /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILDROOT/python-pynwb-2.5.0-3.fc40.x86_64 --record /builddir/build/BUILDROOT/python-pynwb-2.5.0-3.fc40.x86_64/usr/lib/python3.12/site-packages/pynwb-2.5.0.dist-info/RECORD --output /builddir/build/BUILD/python-pynwb-2.5.0-3.fc40.x86_64-pyproject-record + rm -fv /builddir/build/BUILDROOT/python-pynwb-2.5.0-3.fc40.x86_64/usr/lib/python3.12/site-packages/pynwb-2.5.0.dist-info/RECORD removed '/builddir/build/BUILDROOT/python-pynwb-2.5.0-3.fc40.x86_64/usr/lib/python3.12/site-packages/pynwb-2.5.0.dist-info/RECORD' + rm -fv /builddir/build/BUILDROOT/python-pynwb-2.5.0-3.fc40.x86_64/usr/lib/python3.12/site-packages/pynwb-2.5.0.dist-info/REQUESTED removed '/builddir/build/BUILDROOT/python-pynwb-2.5.0-3.fc40.x86_64/usr/lib/python3.12/site-packages/pynwb-2.5.0.dist-info/REQUESTED' ++ wc -l /builddir/build/BUILD/python-pynwb-2.5.0-3.fc40.x86_64-pyproject-ghost-distinfo ++ cut -f1 '-d ' + lines=1 + '[' 1 -ne 1 ']' + RPM_PERCENTAGES_COUNT=2 + /usr/bin/python3 /usr/lib/rpm/redhat/pyproject_save_files.py --output-files /builddir/build/BUILD/python-pynwb-2.5.0-3.fc40.x86_64-pyproject-files --output-modules /builddir/build/BUILD/python-pynwb-2.5.0-3.fc40.x86_64-pyproject-modules --buildroot /builddir/build/BUILDROOT/python-pynwb-2.5.0-3.fc40.x86_64 --sitelib /usr/lib/python3.12/site-packages --sitearch /usr/lib64/python3.12/site-packages --python-version 3.12 --pyproject-record /builddir/build/BUILD/python-pynwb-2.5.0-3.fc40.x86_64-pyproject-record --prefix /usr pynwb + /usr/bin/find-debuginfo -j4 --strict-build-id -m -i --build-id-seed 2.5.0-3.fc40 --unique-debug-suffix -2.5.0-3.fc40.x86_64 --unique-debug-src-base python-pynwb-2.5.0-3.fc40.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/pynwb-2.5.0 find-debuginfo: starting Extracting debug info from 0 files Creating .debug symlinks for symlinks to ELF files find: ‘debug’: No such file or directory find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j4 Bytecompiling .py files below /builddir/build/BUILDROOT/python-pynwb-2.5.0-3.fc40.x86_64/usr/lib/python3.12 using python3.12 + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.LhAPXT + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd pynwb-2.5.0 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + PATH=/builddir/build/BUILDROOT/python-pynwb-2.5.0-3.fc40.x86_64/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin + PYTHONPATH=/builddir/build/BUILDROOT/python-pynwb-2.5.0-3.fc40.x86_64/usr/lib64/python3.12/site-packages:/builddir/build/BUILDROOT/python-pynwb-2.5.0-3.fc40.x86_64/usr/lib/python3.12/site-packages + PYTHONDONTWRITEBYTECODE=1 + PYTEST_ADDOPTS=' --ignore=/builddir/build/BUILD/pynwb-2.5.0/.pyproject-builddir' + PYTEST_XDIST_AUTO_NUM_WORKERS=4 + /usr/bin/python3 ./test.py --backwards --example --integration --pynwb --validation-module --verbose ====================================================================== 2023-11-23 16:35:58,281 - INFO - running pynwb unit tests test_init (unit.test_base.TestImage.test_init) ... test_images (unit.test_base.TestImages.test_images) ... test_add_data_interface (unit.test_base.TestProcessingModule.test_add_data_interface) Test adding a data interface to a ProcessingModule using add(...) and retrieving it. ... test_deprecated_add_container (unit.test_base.TestProcessingModule.test_deprecated_add_container) ... test_deprecated_add_data_interface (unit.test_base.TestProcessingModule.test_deprecated_add_data_interface) ... test_deprecated_get_container (unit.test_base.TestProcessingModule.test_deprecated_get_container) ... test_deprecated_get_data_interface (unit.test_base.TestProcessingModule.test_deprecated_get_data_interface) ... test_get_data_interface (unit.test_base.TestProcessingModule.test_get_data_interface) Test adding a data interface to a ProcessingModule and retrieving it using get(...). ... test_getitem (unit.test_base.TestProcessingModule.test_getitem) Test adding a data interface to a ProcessingModule and retrieving it using __getitem__(...). ... test_init (unit.test_base.TestProcessingModule.test_init) Test creating a ProcessingModule. ... test_bad_continuity_timeseries (unit.test_base.TestTimeSeries.test_bad_continuity_timeseries) ... test_conflicting_time_args (unit.test_base.TestTimeSeries.test_conflicting_time_args) ... test_data_timeseries (unit.test_base.TestTimeSeries.test_data_timeseries) Test that setting a TimeSeries.data to another TimeSeries links the data correctly. ... test_dataio_dci_data (unit.test_base.TestTimeSeries.test_dataio_dci_data) ... test_dataio_dci_timestamps (unit.test_base.TestTimeSeries.test_dataio_dci_timestamps) ... test_dataio_list_data (unit.test_base.TestTimeSeries.test_dataio_list_data) ... test_dataio_list_timestamps (unit.test_base.TestTimeSeries.test_dataio_list_timestamps) ... test_dci_data (unit.test_base.TestTimeSeries.test_dci_data) ... test_dci_data_arr (unit.test_base.TestTimeSeries.test_dci_data_arr) ... test_dci_timestamps (unit.test_base.TestTimeSeries.test_dci_timestamps) ... test_dci_timestamps_arr (unit.test_base.TestTimeSeries.test_dci_timestamps_arr) ... test_dimension_warning (unit.test_base.TestTimeSeries.test_dimension_warning) ... test_get_data_in_units (unit.test_base.TestTimeSeries.test_get_data_in_units) ... test_get_timestamps (unit.test_base.TestTimeSeries.test_get_timestamps) ... test_good_continuity_timeseries (unit.test_base.TestTimeSeries.test_good_continuity_timeseries) ... test_init_conversion_offset (unit.test_base.TestTimeSeries.test_init_conversion_offset) ... test_init_data_timestamps (unit.test_base.TestTimeSeries.test_init_data_timestamps) ... test_init_datalink_set (unit.test_base.TestTimeSeries.test_init_datalink_set) Test creating a TimeSeries and that data_link is an empty set. ... test_init_no_parent (unit.test_base.TestTimeSeries.test_init_no_parent) Test creating an empty TimeSeries and that it has no parent. ... test_init_rate (unit.test_base.TestTimeSeries.test_init_rate) ... test_init_timestampslink_set (unit.test_base.TestTimeSeries.test_init_timestampslink_set) Test creating a TimeSeries and that timestamps_link is an empty set. ... test_no_starting_time (unit.test_base.TestTimeSeries.test_no_starting_time) Test that if no starting_time is given, 0.0 is assumed. ... test_no_time (unit.test_base.TestTimeSeries.test_no_time) ... test_timestamps_timeseries (unit.test_base.TestTimeSeries.test_timestamps_timeseries) Test that setting a TimeSeries.timestamps to another TimeSeries links the timestamps correctly. ... test_check_types (unit.test_base.TestTimeSeriesReference.test_check_types) ... test_data_property (unit.test_base.TestTimeSeriesReference.test_data_property) ... test_data_property_bad_reference (unit.test_base.TestTimeSeriesReference.test_data_property_bad_reference) ... test_data_property_invalid_reference (unit.test_base.TestTimeSeriesReference.test_data_property_invalid_reference) ... test_is_invalid (unit.test_base.TestTimeSeriesReference.test_is_invalid) ... test_is_valid (unit.test_base.TestTimeSeriesReference.test_is_valid) ... test_is_valid_bad_index (unit.test_base.TestTimeSeriesReference.test_is_valid_bad_index) ... test_is_valid_no_num_samples (unit.test_base.TestTimeSeriesReference.test_is_valid_no_num_samples) ... test_timestamps_property (unit.test_base.TestTimeSeriesReference.test_timestamps_property) ... test_timestamps_property_bad_reference (unit.test_base.TestTimeSeriesReference.test_timestamps_property_bad_reference) ... test_timestamps_property_invalid_reference (unit.test_base.TestTimeSeriesReference.test_timestamps_property_invalid_reference) ... test_add_row (unit.test_base.TestTimeSeriesReferenceVectorData.test_add_row) ... test_add_row_get_length1_valid_data (unit.test_base.TestTimeSeriesReferenceVectorData.test_add_row_get_length1_valid_data) Get data from a TimeSeriesReferenceVectorData with one element and valid data ... test_add_row_restricted_type (unit.test_base.TestTimeSeriesReferenceVectorData.test_add_row_restricted_type) ... test_add_row_with_bad_tuple (unit.test_base.TestTimeSeriesReferenceVectorData.test_add_row_with_bad_tuple) ... test_add_row_with_plain_tuple (unit.test_base.TestTimeSeriesReferenceVectorData.test_add_row_with_plain_tuple) ... test_append (unit.test_base.TestTimeSeriesReferenceVectorData.test_append) ... test_append_get_length1_valid_data (unit.test_base.TestTimeSeriesReferenceVectorData.test_append_get_length1_valid_data) Get data from a TimeSeriesReferenceVectorData with one element and valid data ... test_append_restricted_type (unit.test_base.TestTimeSeriesReferenceVectorData.test_append_restricted_type) ... test_append_with_bad_tuple (unit.test_base.TestTimeSeriesReferenceVectorData.test_append_with_bad_tuple) ... test_append_with_plain_tuple (unit.test_base.TestTimeSeriesReferenceVectorData.test_append_with_plain_tuple) ... test_get_empty (unit.test_base.TestTimeSeriesReferenceVectorData.test_get_empty) Get data from an empty TimeSeriesReferenceVectorData ... test_get_length1_invalid_data (unit.test_base.TestTimeSeriesReferenceVectorData.test_get_length1_invalid_data) Get data from a TimeSeriesReferenceVectorData with one element and invalid data ... test_get_length5_valid_data (unit.test_base.TestTimeSeriesReferenceVectorData.test_get_length5_valid_data) Get data from a TimeSeriesReferenceVectorData with 5 elements ... test_get_length5_with_invalid_data (unit.test_base.TestTimeSeriesReferenceVectorData.test_get_length5_with_invalid_data) Get data from a TimeSeriesReferenceVectorData with 5 elements ... test_init (unit.test_base.TestTimeSeriesReferenceVectorData.test_init) ... test_init (unit.test_behavior.BehavioralEpochsConstructor.test_init) ... test_init (unit.test_behavior.BehavioralEventsConstructor.test_init) ... test_init (unit.test_behavior.BehavioralTimeSeriesConstructor.test_init) ... test_init (unit.test_behavior.CompassDirectionConstructor.test_init) ... test_init (unit.test_behavior.EyeTrackingConstructor.test_init) ... test_init (unit.test_behavior.PositionConstructor.test_init) ... test_init (unit.test_behavior.PupilTrackingConstructor.test_init) ... test_gt_3_cols (unit.test_behavior.SpatialSeriesConstructor.test_gt_3_cols) ... test_init (unit.test_behavior.SpatialSeriesConstructor.test_init) ... test_set_unit (unit.test_behavior.SpatialSeriesConstructor.test_set_unit) ... test_available_namespaces (unit.test_core.TestAvailableNamespaces.test_available_namespaces) ... test_constructor (unit.test_core.TestNWBContainer.test_constructor) Test constructor ... test_nwbfields (unit.test_core.TestNWBContainer.test_nwbfields) Test that getters and setters work for nwbfields ... test_append_list (unit.test_core.TestNWBData.test_append_list) ... test_append_ndarray_2d (unit.test_core.TestNWBData.test_append_ndarray_2d) ... test_constructor (unit.test_core.TestNWBData.test_constructor) Test constructor ... test_extend_list (unit.test_core.TestNWBData.test_extend_list) ... test_extend_ndarray_1d (unit.test_core.TestNWBData.test_extend_ndarray_1d) ... test_extend_ndarray_2d (unit.test_core.TestNWBData.test_extend_ndarray_2d) ... test_print_file (unit.test_core.TestPrint.test_print_file) ... test_constructor (unit.test_core_NWBContainer.TestNWBContainer.test_constructor) Test constructor ... test_nwbfields (unit.test_core_NWBContainer.TestNWBContainer.test_nwbfields) Test that getters and setters work for nwbfields ... test_init (unit.test_device.TestDevice.test_init) ... test_init (unit.test_ecephys.ClusterWaveformsConstructor.test_init) ... test_init (unit.test_ecephys.ClusteringConstructor.test_init) ... test_dimensions_warning (unit.test_ecephys.ElectricalSeriesConstructor.test_dimensions_warning) ... test_init (unit.test_ecephys.ElectricalSeriesConstructor.test_init) ... test_invalid_data_shape (unit.test_ecephys.ElectricalSeriesConstructor.test_invalid_data_shape) ... test_link (unit.test_ecephys.ElectricalSeriesConstructor.test_link) ... test_init (unit.test_ecephys.ElectrodeGroupConstructor.test_init) ... test_init_position_bad (unit.test_ecephys.ElectrodeGroupConstructor.test_init_position_bad) ... test_init_position_none (unit.test_ecephys.ElectrodeGroupConstructor.test_init_position_none) ... test_init (unit.test_ecephys.EventDetectionConstructor.test_init) ... test_init (unit.test_ecephys.EventWaveformConstructor.test_init) ... test_init (unit.test_ecephys.FeatureExtractionConstructor.test_init) ... test_invalid_init_mismatched_description (unit.test_ecephys.FeatureExtractionConstructor.test_invalid_init_mismatched_description) ... test_invalid_init_mismatched_description2 (unit.test_ecephys.FeatureExtractionConstructor.test_invalid_init_mismatched_description2) ... test_invalid_init_mismatched_electrodes (unit.test_ecephys.FeatureExtractionConstructor.test_invalid_init_mismatched_electrodes) ... test_invalid_init_mismatched_event_times (unit.test_ecephys.FeatureExtractionConstructor.test_invalid_init_mismatched_event_times) ... test_add_electrical_series (unit.test_ecephys.FilteredEphysTest.test_add_electrical_series) ... test_init (unit.test_ecephys.FilteredEphysTest.test_init) ... test_add_electrical_series (unit.test_ecephys.LFPTest.test_add_electrical_series) ... test_init (unit.test_ecephys.LFPTest.test_init) ... test_incorrect_timestamps (unit.test_ecephys.SpikeEventSeriesConstructor.test_incorrect_timestamps) ... test_init (unit.test_ecephys.SpikeEventSeriesConstructor.test_init) ... test_no_rate (unit.test_ecephys.SpikeEventSeriesConstructor.test_no_rate) ... test_dataframe_roundtrip (unit.test_epoch.TimeIntervalsTest.test_dataframe_roundtrip) ... test_dataframe_roundtrip_drop_ts (unit.test_epoch.TimeIntervalsTest.test_dataframe_roundtrip_drop_ts) ... test_from_dataframe (unit.test_epoch.TimeIntervalsTest.test_from_dataframe) ... test_from_dataframe_missing_required_cols (unit.test_epoch.TimeIntervalsTest.test_from_dataframe_missing_required_cols) ... test_from_dataframe_missing_supplied_col (unit.test_epoch.TimeIntervalsTest.test_from_dataframe_missing_supplied_col) ... test_init (unit.test_epoch.TimeIntervalsTest.test_init) ... /usr/lib64/python3.12/site-packages/pandas/core/dtypes/cast.py:1641: DeprecationWarning: np.find_common_type is deprecated. Please use `np.result_type` or `np.promote_types`. See https://numpy.org/devdocs/release/1.25.0-notes.html and the docs for more information. (Deprecated NumPy 1.25) return np.find_common_type(types, []) /usr/lib64/python3.12/site-packages/pandas/core/dtypes/cast.py:1641: DeprecationWarning: np.find_common_type is deprecated. Please use `np.result_type` or `np.promote_types`. See https://numpy.org/devdocs/release/1.25.0-notes.html and the docs for more information. (Deprecated NumPy 1.25) return np.find_common_type(types, []) /usr/lib64/python3.12/site-packages/pandas/core/dtypes/cast.py:1641: DeprecationWarning: np.find_common_type is deprecated. Please use `np.result_type` or `np.promote_types`. See https://numpy.org/devdocs/release/1.25.0-notes.html and the docs for more information. (Deprecated NumPy 1.25) return np.find_common_type(types, []) /usr/lib64/python3.12/site-packages/pandas/core/dtypes/cast.py:1641: DeprecationWarning: np.find_common_type is deprecated. Please use `np.result_type` or `np.promote_types`. See https://numpy.org/devdocs/release/1.25.0-notes.html and the docs for more information. (Deprecated NumPy 1.25) return np.find_common_type(types, []) test_no_tags (unit.test_epoch.TimeIntervalsTest.test_no_tags) ... /usr/lib64/python3.12/site-packages/pandas/core/dtypes/cast.py:1641: DeprecationWarning: np.find_common_type is deprecated. Please use `np.result_type` or `np.promote_types`. See https://numpy.org/devdocs/release/1.25.0-notes.html and the docs for more information. (Deprecated NumPy 1.25) return np.find_common_type(types, []) test_legacy_format (unit.test_epoch_legacy.TestTimeIntervalsIO.test_legacy_format) ... test_roundtrip (unit.test_epoch_legacy.TestTimeIntervalsIO.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (unit.test_epoch_legacy.TestTimeIntervalsIO.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_catch_dup_name (unit.test_extension.TestCatchDupNS.test_catch_dup_name) ... test_export (unit.test_extension.TestExtension.test_export) ... test_get_class (unit.test_extension.TestExtension.test_get_class) ... test_lab_meta (unit.test_extension.TestExtension.test_lab_meta) ... test_lab_meta_auto (unit.test_extension.TestExtension.test_lab_meta_auto) ... test_load_namespace (unit.test_extension.TestExtension.test_load_namespace) ... test_load_namespace_with_reftype_attribute (unit.test_extension.TestExtension.test_load_namespace_with_reftype_attribute) ... test_load_namespace_with_reftype_attribute_check_autoclass_const (unit.test_extension.TestExtension.test_load_namespace_with_reftype_attribute_check_autoclass_const) ... test_access_group_after_io (unit.test_file.NWBFileTest.test_access_group_after_io) Motivated by #739 ... test_access_processing (unit.test_file.NWBFileTest.test_access_processing) ... test_add_acquisition (unit.test_file.NWBFileTest.test_add_acquisition) ... test_add_acquisition_check_dups (unit.test_file.NWBFileTest.test_add_acquisition_check_dups) ... test_add_acquisition_invalid_name (unit.test_file.NWBFileTest.test_add_acquisition_invalid_name) ... test_add_analysis (unit.test_file.NWBFileTest.test_add_analysis) ... test_add_electrode (unit.test_file.NWBFileTest.test_add_electrode) ... /usr/lib64/python3.12/site-packages/pandas/core/dtypes/cast.py:1641: DeprecationWarning: np.find_common_type is deprecated. Please use `np.result_type` or `np.promote_types`. See https://numpy.org/devdocs/release/1.25.0-notes.html and the docs for more information. (Deprecated NumPy 1.25) return np.find_common_type(types, []) /usr/lib64/python3.12/site-packages/pandas/core/dtypes/cast.py:1641: DeprecationWarning: np.find_common_type is deprecated. Please use `np.result_type` or `np.promote_types`. See https://numpy.org/devdocs/release/1.25.0-notes.html and the docs for more information. (Deprecated NumPy 1.25) return np.find_common_type(types, []) /usr/lib64/python3.12/site-packages/pandas/core/dtypes/cast.py:1641: DeprecationWarning: np.find_common_type is deprecated. Please use `np.result_type` or `np.promote_types`. See https://numpy.org/devdocs/release/1.25.0-notes.html and the docs for more information. (Deprecated NumPy 1.25) return np.find_common_type(types, []) /usr/lib64/python3.12/site-packages/pandas/core/dtypes/cast.py:1641: DeprecationWarning: np.find_common_type is deprecated. Please use `np.result_type` or `np.promote_types`. See https://numpy.org/devdocs/release/1.25.0-notes.html and the docs for more information. (Deprecated NumPy 1.25) return np.find_common_type(types, []) /usr/lib64/python3.12/site-packages/pandas/core/dtypes/cast.py:1641: DeprecationWarning: np.find_common_type is deprecated. Please use `np.result_type` or `np.promote_types`. See https://numpy.org/devdocs/release/1.25.0-notes.html and the docs for more information. (Deprecated NumPy 1.25) return np.find_common_type(types, []) /usr/lib64/python3.12/site-packages/pandas/core/dtypes/cast.py:1641: DeprecationWarning: np.find_common_type is deprecated. Please use `np.result_type` or `np.promote_types`. See https://numpy.org/devdocs/release/1.25.0-notes.html and the docs for more information. (Deprecated NumPy 1.25) return np.find_common_type(types, []) test_add_electrode_missing_group (unit.test_file.NWBFileTest.test_add_electrode_missing_group) Test the case where the user creates an electrode table region with ... test_add_electrode_missing_location (unit.test_file.NWBFileTest.test_add_electrode_missing_location) Test the case where the user creates an electrode table region with ... test_add_electrode_some_opt (unit.test_file.NWBFileTest.test_add_electrode_some_opt) ... /usr/lib64/python3.12/site-packages/pandas/core/dtypes/cast.py:1641: DeprecationWarning: np.find_common_type is deprecated. Please use `np.result_type` or `np.promote_types`. See https://numpy.org/devdocs/release/1.25.0-notes.html and the docs for more information. (Deprecated NumPy 1.25) return np.find_common_type(types, []) /usr/lib64/python3.12/site-packages/pandas/core/dtypes/cast.py:1641: DeprecationWarning: np.find_common_type is deprecated. Please use `np.result_type` or `np.promote_types`. See https://numpy.org/devdocs/release/1.25.0-notes.html and the docs for more information. (Deprecated NumPy 1.25) return np.find_common_type(types, []) /usr/lib64/python3.12/site-packages/pandas/core/dtypes/cast.py:1641: DeprecationWarning: np.find_common_type is deprecated. Please use `np.result_type` or `np.promote_types`. See https://numpy.org/devdocs/release/1.25.0-notes.html and the docs for more information. (Deprecated NumPy 1.25) return np.find_common_type(types, []) /usr/lib64/python3.12/site-packages/pandas/core/dtypes/cast.py:1641: DeprecationWarning: np.find_common_type is deprecated. Please use `np.result_type` or `np.promote_types`. See https://numpy.org/devdocs/release/1.25.0-notes.html and the docs for more information. (Deprecated NumPy 1.25) return np.find_common_type(types, []) /usr/lib64/python3.12/site-packages/pandas/core/dtypes/cast.py:1641: DeprecationWarning: np.find_common_type is deprecated. Please use `np.result_type` or `np.promote_types`. See https://numpy.org/devdocs/release/1.25.0-notes.html and the docs for more information. (Deprecated NumPy 1.25) return np.find_common_type(types, []) /usr/lib64/python3.12/site-packages/pandas/core/dtypes/cast.py:1641: DeprecationWarning: np.find_common_type is deprecated. Please use `np.result_type` or `np.promote_types`. See https://numpy.org/devdocs/release/1.25.0-notes.html and the docs for more information. (Deprecated NumPy 1.25) return np.find_common_type(types, []) /usr/lib64/python3.12/site-packages/pandas/core/dtypes/cast.py:1641: DeprecationWarning: np.find_common_type is deprecated. Please use `np.result_type` or `np.promote_types`. See https://numpy.org/devdocs/release/1.25.0-notes.html and the docs for more information. (Deprecated NumPy 1.25) return np.find_common_type(types, []) /usr/lib64/python3.12/site-packages/pandas/core/dtypes/cast.py:1641: DeprecationWarning: np.find_common_type is deprecated. Please use `np.result_type` or `np.promote_types`. See https://numpy.org/devdocs/release/1.25.0-notes.html and the docs for more information. (Deprecated NumPy 1.25) return np.find_common_type(types, []) test_add_invalid_time_interval (unit.test_file.NWBFileTest.test_add_invalid_time_interval) ... test_add_invalid_time_w_ts (unit.test_file.NWBFileTest.test_add_invalid_time_w_ts) ... test_add_invalid_times_column (unit.test_file.NWBFileTest.test_add_invalid_times_column) ... test_add_stimulus (unit.test_file.NWBFileTest.test_add_stimulus) ... test_add_stimulus_template (unit.test_file.NWBFileTest.test_add_stimulus_template) ... test_add_stimulus_template_images (unit.test_file.NWBFileTest.test_add_stimulus_template_images) ... test_add_trial (unit.test_file.NWBFileTest.test_add_trial) ... test_add_trial_column (unit.test_file.NWBFileTest.test_add_trial_column) ... test_add_unit (unit.test_file.NWBFileTest.test_add_unit) ... test_add_unit_column (unit.test_file.NWBFileTest.test_add_unit_column) ... test_all_children (unit.test_file.NWBFileTest.test_all_children) ... test_constructor (unit.test_file.NWBFileTest.test_constructor) ... test_copy (unit.test_file.NWBFileTest.test_copy) ... test_create_custom_intervals (unit.test_file.NWBFileTest.test_create_custom_intervals) ... test_create_electrode_group (unit.test_file.NWBFileTest.test_create_electrode_group) ... test_create_electrode_group_invalid_index (unit.test_file.NWBFileTest.test_create_electrode_group_invalid_index) Test the case where the user creates an electrode table region with ... test_epoch_tags (unit.test_file.NWBFileTest.test_epoch_tags) ... test_fail_if_source_script_file_name_without_source_script (unit.test_file.NWBFileTest.test_fail_if_source_script_file_name_without_source_script) ... test_get_acquisition_empty (unit.test_file.NWBFileTest.test_get_acquisition_empty) ... test_get_acquisition_multiple_elements (unit.test_file.NWBFileTest.test_get_acquisition_multiple_elements) ... test_get_neurodata_type (unit.test_file.NWBFileTest.test_get_neurodata_type) ... test_multi_experimenters (unit.test_file.NWBFileTest.test_multi_experimenters) ... test_multi_publications (unit.test_file.NWBFileTest.test_multi_publications) ... test_print_units (unit.test_file.NWBFileTest.test_print_units) ... test_set_electrode_table (unit.test_file.NWBFileTest.test_set_electrode_table) ... test_age_reference_arg_check (unit.test_file.SubjectTest.test_age_reference_arg_check) ... test_age_regression_1 (unit.test_file.SubjectTest.test_age_regression_1) ... test_age_regression_2 (unit.test_file.SubjectTest.test_age_regression_2) ... test_constructor (unit.test_file.SubjectTest.test_constructor) ... test_nwbfile_constructor (unit.test_file.SubjectTest.test_nwbfile_constructor) ... test_subject_age_duration (unit.test_file.SubjectTest.test_subject_age_duration) ... test_weight_float (unit.test_file.SubjectTest.test_weight_float) ... test_simple (unit.test_file.TestCacheSpec.test_simple) ... test_simple (unit.test_file.TestNoCacheSpec.test_simple) ... test_reftime_tzaware (unit.test_file.TestTimestampsRefAware.test_reftime_tzaware) ... test_reftime_default (unit.test_file.TestTimestampsRefDefault.test_reftime_default) ... test_raise_warning__add_missing_timezone (unit.test_file.TestTimezone.test_raise_warning__add_missing_timezone) ... test_init (unit.test_icephys.CurrentClampSeriesConstructor.test_init) ... test_unit_warning (unit.test_icephys.CurrentClampSeriesConstructor.test_unit_warning) ... test_init (unit.test_icephys.CurrentClampStimulusSeriesConstructor.test_init) ... test_unit_warning (unit.test_icephys.CurrentClampStimulusSeriesConstructor.test_unit_warning) ... test_init (unit.test_icephys.IZeroClampSeriesConstructor.test_init) ... test_stim_desc_warning (unit.test_icephys.IZeroClampSeriesConstructor.test_stim_desc_warning) ... test_unit_warning (unit.test_icephys.IZeroClampSeriesConstructor.test_unit_warning) ... test_constructor (unit.test_icephys.IntracellularElectrodeConstructor.test_constructor) ... test_add_ic_electrode_deprecation (unit.test_icephys.NWBFileICEphys.test_add_ic_electrode_deprecation) ... test_create_ic_electrode_deprecation (unit.test_icephys.NWBFileICEphys.test_create_ic_electrode_deprecation) ... test_ic_electrodes_attribute_deprecation (unit.test_icephys.NWBFileICEphys.test_ic_electrodes_attribute_deprecation) ... test_ic_electrodes_parameter_deprecation (unit.test_icephys.NWBFileICEphys.test_ic_electrodes_parameter_deprecation) ... test_icephys_electrodes_parameter (unit.test_icephys.NWBFileICEphys.test_icephys_electrodes_parameter) ... test_sweep_table_depractation_warn (unit.test_icephys.NWBFileICEphys.test_sweep_table_depractation_warn) ... test_data_shape (unit.test_icephys.PatchClampSeriesConstructor.test_data_shape) ... test_default (unit.test_icephys.PatchClampSeriesConstructor.test_default) ... test_sweepNumber_large_and_valid (unit.test_icephys.PatchClampSeriesConstructor.test_sweepNumber_large_and_valid) ... test_sweepNumber_throws_with_Float (unit.test_icephys.PatchClampSeriesConstructor.test_sweepNumber_throws_with_Float) ... test_sweepNumber_throws_with_NaN (unit.test_icephys.PatchClampSeriesConstructor.test_sweepNumber_throws_with_NaN) ... test_sweepNumber_throws_with_negative (unit.test_icephys.PatchClampSeriesConstructor.test_sweepNumber_throws_with_negative) ... test_sweepNumber_valid (unit.test_icephys.PatchClampSeriesConstructor.test_sweepNumber_valid) ... test_sweepNumber_valid_np (unit.test_icephys.PatchClampSeriesConstructor.test_sweepNumber_valid_np) ... test_init (unit.test_icephys.VoltageClampSeriesConstructor.test_init) ... test_unit_warning (unit.test_icephys.VoltageClampSeriesConstructor.test_unit_warning) ... test_init (unit.test_icephys.VoltageClampStimulusSeriesConstructor.test_init) ... test_unit_warning (unit.test_icephys.VoltageClampStimulusSeriesConstructor.test_unit_warning) ... test_basic_write (unit.test_icephys_metadata_tables.ExperimentalConditionsTableTests.test_basic_write) Populate, write, and read the ExperimentalConditionsTable container and other required containers ... test_enforce_unique_id (unit.test_icephys_metadata_tables.ExperimentalConditionsTableTests.test_enforce_unique_id) Test to ensure that unique ids are enforced on RepetitionsTable table ... test_init (unit.test_icephys_metadata_tables.ExperimentalConditionsTableTests.test_init) Test __init__ to make sure we can instantiate the ExperimentalConditionsTable container ... test_missing_repetitions_on_init (unit.test_icephys_metadata_tables.ExperimentalConditionsTableTests.test_missing_repetitions_on_init) Test that ValueError is raised when repetitions is missing. This is ... test_add_column (unit.test_icephys_metadata_tables.IntracellularRecordingsTableTests.test_add_column) ... test_add_row (unit.test_icephys_metadata_tables.IntracellularRecordingsTableTests.test_add_row) ... test_add_row_check_start_index_and_index_count_are_fixed (unit.test_icephys_metadata_tables.IntracellularRecordingsTableTests.test_add_row_check_start_index_and_index_count_are_fixed) ... test_add_row_incompatible_types (unit.test_icephys_metadata_tables.IntracellularRecordingsTableTests.test_add_row_incompatible_types) ... test_add_row_index_out_of_range (unit.test_icephys_metadata_tables.IntracellularRecordingsTableTests.test_add_row_index_out_of_range) ... test_add_row_no_response (unit.test_icephys_metadata_tables.IntracellularRecordingsTableTests.test_add_row_no_response) ... test_add_row_no_stimulus (unit.test_icephys_metadata_tables.IntracellularRecordingsTableTests.test_add_row_no_stimulus) ... test_add_row_no_stimulus_and_response (unit.test_icephys_metadata_tables.IntracellularRecordingsTableTests.test_add_row_no_stimulus_and_response) ... test_basic_write (unit.test_icephys_metadata_tables.IntracellularRecordingsTableTests.test_basic_write) Populate, write, and read the SimultaneousRecordingsTable container and other required containers ... test_enforce_unique_id (unit.test_icephys_metadata_tables.IntracellularRecordingsTableTests.test_enforce_unique_id) Test to ensure that unique ids are enforced on RepetitionsTable table ... test_error_if_IZeroClampSeries_with_stimulus (unit.test_icephys_metadata_tables.IntracellularRecordingsTableTests.test_error_if_IZeroClampSeries_with_stimulus) ... test_inconsistent_PatchClampSeries (unit.test_icephys_metadata_tables.IntracellularRecordingsTableTests.test_inconsistent_PatchClampSeries) ... test_init (unit.test_icephys_metadata_tables.IntracellularRecordingsTableTests.test_init) ... test_no_electrode (unit.test_icephys_metadata_tables.IntracellularRecordingsTableTests.test_no_electrode) ... test_noerror_if_IZeroClampSeries (unit.test_icephys_metadata_tables.IntracellularRecordingsTableTests.test_noerror_if_IZeroClampSeries) ... test_round_trip_container_no_data (unit.test_icephys_metadata_tables.IntracellularRecordingsTableTests.test_round_trip_container_no_data) Test read and write the container by itself ... test_to_dataframe (unit.test_icephys_metadata_tables.IntracellularRecordingsTableTests.test_to_dataframe) ... test_write_with_stimulus_template (unit.test_icephys_metadata_tables.IntracellularRecordingsTableTests.test_write_with_stimulus_template) Populate, write, and read the SimultaneousRecordingsTable container and other required containers ... test_add_icephys_meta_full_roundtrip (unit.test_icephys_metadata_tables.NWBFileTests.test_add_icephys_meta_full_roundtrip) This test adds all data and then constructs step-by-step the full table structure ... test_deprecate_simultaneous_recordings_on_add_stimulus (unit.test_icephys_metadata_tables.NWBFileTests.test_deprecate_simultaneous_recordings_on_add_stimulus) Test that warnings are raised if the user tries to use a simultaneous_recordings table ... test_deprecate_sweepstable_on_add_acquistion (unit.test_icephys_metadata_tables.NWBFileTests.test_deprecate_sweepstable_on_add_acquistion) Test that warnings are raised if the user tries to use a sweeps table ... test_deprecate_sweepstable_on_init (unit.test_icephys_metadata_tables.NWBFileTests.test_deprecate_sweepstable_on_init) Test that warnings are raised if the user tries to use a sweeps table ... test_deprecate_sweeptable_on_add_stimulus_template (unit.test_icephys_metadata_tables.NWBFileTests.test_deprecate_sweeptable_on_add_stimulus_template) Make sure we warn when using the sweep-table ... test_deprectation_icephys_filtering_on_init (unit.test_icephys_metadata_tables.NWBFileTests.test_deprectation_icephys_filtering_on_init) ... test_get_icephys_meta_parent_table (unit.test_icephys_metadata_tables.NWBFileTests.test_get_icephys_meta_parent_table) Create the table hierarchy step-by-step and check that as we add tables the get_icephys_meta_parent_table ... test_icephys_filtering_roundtrip (unit.test_icephys_metadata_tables.NWBFileTests.test_icephys_filtering_roundtrip) ... test_basic_write (unit.test_icephys_metadata_tables.RepetitionsTableTests.test_basic_write) Populate, write, and read the RepetitionsTable container and other required containers ... test_enforce_unique_id (unit.test_icephys_metadata_tables.RepetitionsTableTests.test_enforce_unique_id) Test to ensure that unique ids are enforced on RepetitionsTable table ... test_init (unit.test_icephys_metadata_tables.RepetitionsTableTests.test_init) Test __init__ to make sure we can instantiate the RepetitionsTable container ... test_missing_sequential_recordings_on_init (unit.test_icephys_metadata_tables.RepetitionsTableTests.test_missing_sequential_recordings_on_init) Test that ValueError is raised when sequential_recordings is missing. This is ... test_basic_write (unit.test_icephys_metadata_tables.SequentialRecordingsTableTests.test_basic_write) Populate, write, and read the SequentialRecordingsTable container and other required containers ... test_enforce_unique_id (unit.test_icephys_metadata_tables.SequentialRecordingsTableTests.test_enforce_unique_id) Test to ensure that unique ids are enforced on RepetitionsTable table ... test_init (unit.test_icephys_metadata_tables.SequentialRecordingsTableTests.test_init) Test __init__ to make sure we can instantiate the SequentialRecordingsTable container ... test_missing_simultaneous_recordings_on_init (unit.test_icephys_metadata_tables.SequentialRecordingsTableTests.test_missing_simultaneous_recordings_on_init) Test that ValueError is raised when simultaneous_recordings is missing. This is ... test_add_simultaneous_recording (unit.test_icephys_metadata_tables.SimultaneousRecordingsTableTests.test_add_simultaneous_recording) Populate, write, and read the SimultaneousRecordingsTable container and other required containers ... test_basic_write (unit.test_icephys_metadata_tables.SimultaneousRecordingsTableTests.test_basic_write) Populate, write, and read the SimultaneousRecordingsTable container and other required containers ... test_enforce_unique_id (unit.test_icephys_metadata_tables.SimultaneousRecordingsTableTests.test_enforce_unique_id) Test to ensure that unique ids are enforced on RepetitionsTable table ... test_init (unit.test_icephys_metadata_tables.SimultaneousRecordingsTableTests.test_init) Test __init__ to make sure we can instantiate the SimultaneousRecordingsTable container ... test_missing_intracellular_recordings_on_init (unit.test_icephys_metadata_tables.SimultaneousRecordingsTableTests.test_missing_intracellular_recordings_on_init) Test that ValueError is raised when intracellular_recordings is missing. This is ... test_init (unit.test_image.ImageMaskSeriesConstructor.test_init) ... test_data_no_frame (unit.test_image.ImageSeriesConstructor.test_data_no_frame) ... test_data_no_unit (unit.test_image.ImageSeriesConstructor.test_data_no_unit) ... test_dimension_warning (unit.test_image.ImageSeriesConstructor.test_dimension_warning) Test that a warning is raised when the dimensions of the data are not the ... test_dimension_warning_external_file_with_rate (unit.test_image.ImageSeriesConstructor.test_dimension_warning_external_file_with_rate) Test that a warning is not raised when external file is used with rate. ... test_dimension_warning_external_file_with_timestamps (unit.test_image.ImageSeriesConstructor.test_dimension_warning_external_file_with_timestamps) Test that a warning is not raised when external file is used with timestamps. ... test_external_file_default_format (unit.test_image.ImageSeriesConstructor.test_external_file_default_format) Test that format is set to 'external' if not provided, when external_file is provided. ... test_external_file_no_frame (unit.test_image.ImageSeriesConstructor.test_external_file_no_frame) ... test_external_file_no_unit (unit.test_image.ImageSeriesConstructor.test_external_file_no_unit) ... test_external_file_with_correct_format (unit.test_image.ImageSeriesConstructor.test_external_file_with_correct_format) Test that warning is not raised when external_file is provided and format ... test_external_file_with_correct_starting_frame (unit.test_image.ImageSeriesConstructor.test_external_file_with_correct_starting_frame) Test that ValueError is not raised when the length of starting_frame ... test_external_file_with_data (unit.test_image.ImageSeriesConstructor.test_external_file_with_data) Test that ValueError is raised when external_file is provided and ... test_external_file_with_data_construct_mode (unit.test_image.ImageSeriesConstructor.test_external_file_with_data_construct_mode) Test that UserWarning is raised when external_file is provided and ... test_external_file_with_default_starting_frame (unit.test_image.ImageSeriesConstructor.test_external_file_with_default_starting_frame) Test that starting_frame is set to [0] if not provided, when external_file is has length 1. ... test_external_file_with_incorrect_format (unit.test_image.ImageSeriesConstructor.test_external_file_with_incorrect_format) Test that ValueError is raised when external_file is provided but ... test_external_file_with_incorrect_format_construct_mode (unit.test_image.ImageSeriesConstructor.test_external_file_with_incorrect_format_construct_mode) Test that UserWarning is raised when external_file is provided but ... test_external_file_with_incorrect_starting_frame (unit.test_image.ImageSeriesConstructor.test_external_file_with_incorrect_starting_frame) Test that ValueError is raised when the length of starting_frame ... test_external_file_with_incorrect_starting_frame_construct_mode (unit.test_image.ImageSeriesConstructor.test_external_file_with_incorrect_starting_frame_construct_mode) Test that warning is raised when the length of starting_frame ... test_init (unit.test_image.ImageSeriesConstructor.test_init) ... test_no_data_no_file (unit.test_image.ImageSeriesConstructor.test_no_data_no_file) ... test_init (unit.test_image.IndexSeriesConstructor.test_init) ... test_init_bad_unit (unit.test_image.IndexSeriesConstructor.test_init_bad_unit) ... test_init_indexed_ts (unit.test_image.IndexSeriesConstructor.test_init_indexed_ts) ... test_init (unit.test_image.OpticalSeriesConstructor.test_init) ... test_grayscale_image (unit.test_image.TestImageSubtypes.test_grayscale_image) ... test_rgb_image (unit.test_image.TestImageSubtypes.test_rgb_image) ... test_rgba_image (unit.test_image.TestImageSubtypes.test_rgba_image) ... test_init (unit.test_misc.AbstractFeatureSeriesConstructor.test_init) ... test_init (unit.test_misc.AnnotationSeriesConstructor.test_init) ... test_init (unit.test_misc.DecompositionSeriesConstructor.test_init) ... test_init_delayed_bands (unit.test_misc.DecompositionSeriesConstructor.test_init_delayed_bands) ... test_init_with_source_channels (unit.test_misc.DecompositionSeriesConstructor.test_init_with_source_channels) ... test_add_interval (unit.test_misc.IntervalSeriesConstructor.test_add_interval) ... test_init (unit.test_misc.IntervalSeriesConstructor.test_init) ... test_add_spike_times (unit.test_misc.UnitsTests.test_add_spike_times) ... test_add_waveforms (unit.test_misc.UnitsTests.test_add_waveforms) ... test_electrode_group (unit.test_misc.UnitsTests.test_electrode_group) ... test_get_obs_intervals (unit.test_misc.UnitsTests.test_get_obs_intervals) ... test_get_spike_times (unit.test_misc.UnitsTests.test_get_spike_times) ... test_get_spike_times_interval (unit.test_misc.UnitsTests.test_get_spike_times_interval) ... test_get_spike_times_multi (unit.test_misc.UnitsTests.test_get_spike_times_multi) ... test_get_spike_times_multi_interval (unit.test_misc.UnitsTests.test_get_spike_times_multi_interval) ... test_init (unit.test_misc.UnitsTests.test_init) ... test_obs_intervals (unit.test_misc.UnitsTests.test_obs_intervals) ... test_times (unit.test_misc.UnitsTests.test_times) ... test_times_and_intervals (unit.test_misc.UnitsTests.test_times_and_intervals) ... test_waveform_attrs (unit.test_misc.UnitsTests.test_waveform_attrs) ... test_init (unit.test_ogen.OptogeneticSeriesConstructor.test_init) ... test_init (unit.test_ophys.CorrectedImageStackConstructor.test_init) ... test_init (unit.test_ophys.DfOverFConstructor.test_init) ... test_init (unit.test_ophys.FluorescenceConstructor.test_init) ... test_init (unit.test_ophys.ImageSegmentationConstructor.test_init) ... test_conversion_deprecated (unit.test_ophys.ImagingPlaneConstructor.test_conversion_deprecated) ... test_init (unit.test_ophys.ImagingPlaneConstructor.test_init) ... test_manifold_deprecated (unit.test_ophys.ImagingPlaneConstructor.test_manifold_deprecated) ... test_unit_deprecated (unit.test_ophys.ImagingPlaneConstructor.test_unit_deprecated) ... test_init (unit.test_ophys.MotionCorrectionConstructor.test_init) ... test_init (unit.test_ophys.OnePhotonSeriesConstructor.test_init) ... test_negative_binning_assertion (unit.test_ophys.OnePhotonSeriesConstructor.test_negative_binning_assertion) ... test_init (unit.test_ophys.OpticalChannelConstructor.test_init) ... test_conversion_of_2d_image_mask_to_pixel_mask (unit.test_ophys.PlaneSegmentationConstructor.test_conversion_of_2d_image_mask_to_pixel_mask) ... test_conversion_of_2d_pixel_mask_to_image_mask (unit.test_ophys.PlaneSegmentationConstructor.test_conversion_of_2d_pixel_mask_to_image_mask) ... test_init (unit.test_ophys.PlaneSegmentationConstructor.test_init) ... test_init_3d_image_mask (unit.test_ophys.PlaneSegmentationConstructor.test_init_3d_image_mask) ... test_init_image_mask (unit.test_ophys.PlaneSegmentationConstructor.test_init_image_mask) ... test_init_pixel_mask (unit.test_ophys.PlaneSegmentationConstructor.test_init_pixel_mask) ... test_init_voxel_mask (unit.test_ophys.PlaneSegmentationConstructor.test_init_voxel_mask) ... test_init (unit.test_ophys.RoiResponseSeriesConstructor.test_init) ... test_warnings (unit.test_ophys.RoiResponseSeriesConstructor.test_warnings) ... test_init (unit.test_ophys.TwoPhotonSeriesConstructor.test_init) ... test_constructor (unit.test_resources.TestNWBContainer.test_constructor) Test constructor ... test_init (unit.test_retinotopy.AxisMapConstructor.test_init) Test that AxisMap constructor sets properties correctly. ... test_init_dimension_wrong_shape (unit.test_retinotopy.AxisMapConstructor.test_init_dimension_wrong_shape) Test that creating an AxisMap with a dimension argument that is not 2 elements raises an error. ... test_init_fov_wrong_shape (unit.test_retinotopy.AxisMapConstructor.test_init_fov_wrong_shape) Test that creating an AxisMap with a dimension argument that is not 2 elements raises an error. ... test_init (unit.test_retinotopy.FocalDepthImageConstructor.test_init) Test that FocalDepthImage constructor sets properties correctly. ... test_init (unit.test_retinotopy.ImageRetinotopyConstructor.test_init) Test that ImagingRetinotopy constructor sets properties correctly. ... test_init_axis_descriptions_wrong_shape (unit.test_retinotopy.ImageRetinotopyConstructor.test_init_axis_descriptions_wrong_shape) Test that creating a ImagingRetinotopy with a axis descriptions argument that is not 2 elements raises an ... test_init (unit.test_retinotopy.RetinotopyImageConstructor.test_init) Test that RetinotopyImage constructor sets properties correctly. ... test_init_dimension_wrong_shape (unit.test_retinotopy.RetinotopyImageConstructor.test_init_dimension_wrong_shape) Test that creating a RetinotopyImage with a dimension argument that is not 2 elements raises an error. ... test_init_fov_wrong_shape (unit.test_retinotopy.RetinotopyImageConstructor.test_init_fov_wrong_shape) Test that creating a RetinotopyImage with a field of view argument that is not 2 elements raises an error. ... test_init (unit.test_retinotopy.RetinotopyMapConstructor.test_init) Test that RetinotopyMap constructor sets properties correctly. ... test_add_scratch_container (unit.test_scratch.TestScratchData.test_add_scratch_container) ... test_add_scratch_container_description (unit.test_scratch.TestScratchData.test_add_scratch_container_description) ... test_add_scratch_container_name (unit.test_scratch.TestScratchData.test_add_scratch_container_name) ... test_add_scratch_dataframe (unit.test_scratch.TestScratchData.test_add_scratch_dataframe) ... /usr/lib64/python3.12/site-packages/pandas/core/dtypes/cast.py:1641: DeprecationWarning: np.find_common_type is deprecated. Please use `np.result_type` or `np.promote_types`. See https://numpy.org/devdocs/release/1.25.0-notes.html and the docs for more information. (Deprecated NumPy 1.25) return np.find_common_type(types, []) /usr/lib64/python3.12/site-packages/pandas/core/dtypes/cast.py:1641: DeprecationWarning: np.find_common_type is deprecated. Please use `np.result_type` or `np.promote_types`. See https://numpy.org/devdocs/release/1.25.0-notes.html and the docs for more information. (Deprecated NumPy 1.25) return np.find_common_type(types, []) test_add_scratch_dataframe_no_description (unit.test_scratch.TestScratchData.test_add_scratch_dataframe_no_description) ... test_add_scratch_dynamictable (unit.test_scratch.TestScratchData.test_add_scratch_dynamictable) ... test_add_scratch_int (unit.test_scratch.TestScratchData.test_add_scratch_int) ... test_add_scratch_list (unit.test_scratch.TestScratchData.test_add_scratch_list) ... test_add_scratch_list_no_name (unit.test_scratch.TestScratchData.test_add_scratch_list_no_name) ... test_add_scratch_ndarray (unit.test_scratch.TestScratchData.test_add_scratch_ndarray) ... test_add_scratch_ndarray_no_description (unit.test_scratch.TestScratchData.test_add_scratch_ndarray_no_description) ... test_add_scratch_scratchdata (unit.test_scratch.TestScratchData.test_add_scratch_scratchdata) ... test_constructor_list (unit.test_scratch.TestScratchData.test_constructor_list) ... test_get_scratch_df_convert_false (unit.test_scratch.TestScratchData.test_get_scratch_df_convert_false) ... test_get_scratch_list_convert_false (unit.test_scratch.TestScratchData.test_get_scratch_list_convert_false) ... test_constructor (unit.test_spec.NWBNamespaceTest.test_constructor) ... test_constructor (unit.test_spec.NWBRefSpecTests.test_constructor) ... test_wrong_reference_type (unit.test_spec.NWBRefSpecTests.test_wrong_reference_type) ... ---------------------------------------------------------------------- Ran 339 tests in 23.774s OK ====================================================================== 2023-11-23 16:36:23,078 - INFO - running example tests ====================================================================== 2023-11-23 16:36:23,078 - INFO - running integration tests test_roundtrip (integration.hdf5.test_base.TestImagesIO.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_base.TestImagesIO.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_base.TestTimeSeriesIO.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_base.TestTimeSeriesIO.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_timestamps_linking (integration.hdf5.test_base.TestTimeSeriesLinking.test_timestamps_linking) Test that timestamps get linked to in TimeSeries ... test_roundtrip (integration.hdf5.test_device.TestDeviceIO.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_device.TestDeviceIO.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_ecephys.ClusterWaveformsConstructor.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_ecephys.ClusterWaveformsConstructor.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_ecephys.EventDetectionConstructor.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_ecephys.EventDetectionConstructor.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_ecephys.EventWaveformConstructor.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_ecephys.EventWaveformConstructor.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_ecephys.FeatureExtractionConstructor.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_ecephys.FeatureExtractionConstructor.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_ecephys.TestClusteringIO.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_ecephys.TestClusteringIO.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_eg_ref (integration.hdf5.test_ecephys.TestElectricalSeriesIO.test_eg_ref) Test that the electrode DynamicTableRegion references of the read ElectricalSeries have a group that ... test_roundtrip (integration.hdf5.test_ecephys.TestElectricalSeriesIO.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_ecephys.TestElectricalSeriesIO.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_ecephys.TestElectrodeGroupIO.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_ecephys.TestElectrodeGroupIO.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_ecephys.TestFilteredEphysIO.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_ecephys.TestFilteredEphysIO.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_ecephys.TestLFPIO.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_ecephys.TestLFPIO.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_icephys.TestCurrentClampSeries.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_icephys.TestCurrentClampSeries.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_icephys.TestCurrentClampStimulusSeries.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_icephys.TestCurrentClampStimulusSeries.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_icephys.TestIZeroClampSeries.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_icephys.TestIZeroClampSeries.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_icephys.TestIntracellularElectrode.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_icephys.TestIntracellularElectrode.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_icephys.TestPatchClampSeries.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_icephys.TestPatchClampSeries.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_container (integration.hdf5.test_icephys.TestSweepTableRoundTripComplicated.test_container) Test properties of the SweepTable read from file ... test_roundtrip (integration.hdf5.test_icephys.TestSweepTableRoundTripComplicated.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_icephys.TestSweepTableRoundTripComplicated.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_container (integration.hdf5.test_icephys.TestSweepTableRoundTripEasy.test_container) Test properties of the SweepTable read from file ... test_roundtrip (integration.hdf5.test_icephys.TestSweepTableRoundTripEasy.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_icephys.TestSweepTableRoundTripEasy.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_icephys.TestVoltageClampSeries.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_icephys.TestVoltageClampSeries.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_icephys.TestVoltageClampStimulusSeries.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_icephys.TestVoltageClampStimulusSeries.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_image.TestImageSeriesIO.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_image.TestImageSeriesIO.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_image.TestOpticalSeriesIO.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_image.TestOpticalSeriesIO.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_append (integration.hdf5.test_io.TestAppend.test_append) ... test_electrode_id_uniqueness (integration.hdf5.test_io.TestAppend.test_electrode_id_uniqueness) ... test_gzip_timestamps (integration.hdf5.test_io.TestH5DataIO.test_gzip_timestamps) ... test_write_dataset_custom_chunks (integration.hdf5.test_io.TestH5DataIO.test_write_dataset_custom_chunks) ... test_write_dataset_custom_compress (integration.hdf5.test_io.TestH5DataIO.test_write_dataset_custom_compress) ... test_write_dataset_custom_fillvalue (integration.hdf5.test_io.TestH5DataIO.test_write_dataset_custom_fillvalue) ... test_write_dataset_datachunkiterator_data_and_time (integration.hdf5.test_io.TestH5DataIO.test_write_dataset_datachunkiterator_data_and_time) ... test_write_dataset_datachunkiterator_data_only (integration.hdf5.test_io.TestH5DataIO.test_write_dataset_datachunkiterator_data_only) ... test_write_dataset_datachunkiterator_with_compression (integration.hdf5.test_io.TestH5DataIO.test_write_dataset_datachunkiterator_with_compression) ... test_nwbio (integration.hdf5.test_io.TestHDF5Writer.test_nwbio) ... test_write_cache_spec (integration.hdf5.test_io.TestHDF5Writer.test_write_cache_spec) Round-trip test for writing spec and reading it back in ... test_write_clobber (integration.hdf5.test_io.TestHDF5Writer.test_write_clobber) ... test_write_no_cache_spec (integration.hdf5.test_io.TestHDF5Writer.test_write_no_cache_spec) Round-trip test for not writing spec ... test_nwbio (integration.hdf5.test_io.TestHDF5WriterWithInjectedFile.test_nwbio) ... test_write_cache_spec (integration.hdf5.test_io.TestHDF5WriterWithInjectedFile.test_write_cache_spec) Round-trip test for writing spec and reading it back in ... test_write_clobber (integration.hdf5.test_io.TestHDF5WriterWithInjectedFile.test_write_clobber) ... test_check_nwb_version_missing_version (integration.hdf5.test_io.TestNWBHDF5IO.test_check_nwb_version_missing_version) Test reading of files with missing nwb_version ... test_check_nwb_version_ok (integration.hdf5.test_io.TestNWBHDF5IO.test_check_nwb_version_ok) Test that opening a current NWBFile passes the version check ... test_check_nwb_version_old_version (integration.hdf5.test_io.TestNWBHDF5IO.test_check_nwb_version_old_version) Test reading of files with version less than 2 ... test_nwb_version_property (integration.hdf5.test_io.TestNWBHDF5IO.test_nwb_version_property) Test reading of files with missing nwb_version ... test_round_trip_with_path_string (integration.hdf5.test_io.TestNWBHDF5IO.test_round_trip_with_path_string) Opening a NWBHDF5IO with a path string should work correctly ... test_round_trip_with_pathlib_path (integration.hdf5.test_io.TestNWBHDF5IO.test_round_trip_with_pathlib_path) Opening a NWBHDF5IO with a pathlib path should correctly ... test_roundtrip (integration.hdf5.test_misc.TestDecompositionSeriesIO.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_misc.TestDecompositionSeriesIO.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_eg_ref (integration.hdf5.test_misc.TestDecompositionSeriesWithSourceChannelsIO.test_eg_ref) Test that the electrode DynamicTableRegion references of the read ElectricalSeries have a group that ... test_roundtrip (integration.hdf5.test_misc.TestDecompositionSeriesWithSourceChannelsIO.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_misc.TestDecompositionSeriesWithSourceChannelsIO.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_misc.TestUnitsFileIO.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_misc.TestUnitsFileIO.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_to_dataframe (integration.hdf5.test_misc.TestUnitsFileIO.test_to_dataframe) ... test_get_obs_intervals (integration.hdf5.test_misc.TestUnitsIO.test_get_obs_intervals) Test whether the Units observation intervals read from file are what was written ... test_get_spike_times (integration.hdf5.test_misc.TestUnitsIO.test_get_spike_times) Test whether the Units spike times read from file are what was written ... test_roundtrip (integration.hdf5.test_misc.TestUnitsIO.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_misc.TestUnitsIO.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_link_root (integration.hdf5.test_modular_storage.TestTimeSeriesModular.test_link_root) ... test_roundtrip (integration.hdf5.test_modular_storage.TestTimeSeriesModular.test_roundtrip) ... test_roundtrip (integration.hdf5.test_nwbfile.TestAddStimulusTemplateImages.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_nwbfile.TestAddStimulusTemplateImages.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_nwbfile.TestAddStimulusTemplateTimeSeries.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_nwbfile.TestAddStimulusTemplateTimeSeries.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_nwbfile.TestDynamicTableFromDataframeIO.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_nwbfile.TestDynamicTableFromDataframeIO.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_to_dataframe (integration.hdf5.test_nwbfile.TestDynamicTableFromDataframeIO.test_to_dataframe) ... test_roundtrip (integration.hdf5.test_nwbfile.TestElectrodes.test_roundtrip) ... test_roundtrip_export (integration.hdf5.test_nwbfile.TestElectrodes.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_nwbfile.TestElectrodesOptColumns.test_roundtrip) ... test_roundtrip_export (integration.hdf5.test_nwbfile.TestElectrodesOptColumns.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_nwbfile.TestElectrodesRegion.test_roundtrip) ... test_roundtrip_export (integration.hdf5.test_nwbfile.TestElectrodesRegion.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_nwbfile.TestEmptySubjectIO.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_nwbfile.TestEmptySubjectIO.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_nwbfile.TestEpochsIO.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_nwbfile.TestEpochsIO.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_df_comparison (integration.hdf5.test_nwbfile.TestEpochsIODf.test_df_comparison) Test that the epochs read from file converted to a data frame are the same as the data frame converted ... test_df_comparison_no_ts (integration.hdf5.test_nwbfile.TestEpochsIODf.test_df_comparison_no_ts) Test that the epochs read from file converted to a data frame are the same as the data frame converted ... test_roundtrip (integration.hdf5.test_nwbfile.TestEpochsIODf.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_nwbfile.TestEpochsIODf.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_nwbfile.TestExperimentersConstructorRoundtrip.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_nwbfile.TestExperimentersConstructorRoundtrip.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_nwbfile.TestExperimentersSetterRoundtrip.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_nwbfile.TestExperimentersSetterRoundtrip.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_nwbfile.TestInvalidTimes.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_nwbfile.TestInvalidTimes.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_children (integration.hdf5.test_nwbfile.TestNWBFileHDF5IO.test_children) Test that the TimeSeries and processing module are children of their respective parents ... test_read (integration.hdf5.test_nwbfile.TestNWBFileHDF5IO.test_read) Test reading the NWBFile using HDF5IO ... test_write (integration.hdf5.test_nwbfile.TestNWBFileHDF5IO.test_write) Test writing the NWBFile using HDF5IO ... test_roundtrip (integration.hdf5.test_nwbfile.TestNWBFileIO.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_nwbfile.TestNWBFileIO.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_nwbfile.TestPublicationsConstructorRoundtrip.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_nwbfile.TestPublicationsConstructorRoundtrip.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_nwbfile.TestPublicationsSetterRoundtrip.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_nwbfile.TestPublicationsSetterRoundtrip.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_nwbfile.TestSubjectAgeReferenceNotSetIO.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_nwbfile.TestSubjectAgeReferenceNotSetIO.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_nwbfile.TestSubjectIO.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_nwbfile.TestSubjectIO.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_nwbfile.TestTrials.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_nwbfile.TestTrials.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_nwbfile.TestUnits.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_nwbfile.TestUnits.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_ogen.TestOptogeneticSeriesIO.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_ogen.TestOptogeneticSeriesIO.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_ogen.TestOptogeneticStimulusSiteIO.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_ogen.TestOptogeneticStimulusSiteIO.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_ophys.MaskIO.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_ophys.MaskIO.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_ophys.TestCorrectedImageStackIO.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_ophys.TestCorrectedImageStackIO.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_ophys.TestImageMaskIO.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_ophys.TestImageMaskIO.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_ophys.TestImagingPlaneIO.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_ophys.TestImagingPlaneIO.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_ophys.TestMotionCorrection.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_ophys.TestMotionCorrection.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_ophys.TestOnePhotonSeriesIO.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_ophys.TestOnePhotonSeriesIO.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_ophys.TestPixelMaskIO.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_ophys.TestPixelMaskIO.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_ophys.TestPlaneSegmentationIO.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_ophys.TestPlaneSegmentationIO.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_ophys.TestRoiResponseSeriesIO.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_ophys.TestRoiResponseSeriesIO.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_ophys.TestTwoPhotonSeriesIO.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_ophys.TestTwoPhotonSeriesIO.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_roundtrip (integration.hdf5.test_scratch.TestScratchDataIO.test_roundtrip) Test whether the read Container has the same contents as the original Container and validate the file. ... test_roundtrip_export (integration.hdf5.test_scratch.TestScratchDataIO.test_roundtrip_export) Test whether the test Container read from an exported file has the same contents as the original test Container ... test_scratch_container (integration.hdf5.test_scratch.TestScratchDataIO.test_scratch_container) ... test_scratch_convert_DataFrame_table_desc (integration.hdf5.test_scratch.TestScratchDataIO.test_scratch_convert_DataFrame_table_desc) Test round trip convert of DataFrame with a table description ... /usr/lib64/python3.12/site-packages/pandas/core/dtypes/cast.py:1641: DeprecationWarning: np.find_common_type is deprecated. Please use `np.result_type` or `np.promote_types`. See https://numpy.org/devdocs/release/1.25.0-notes.html and the docs for more information. (Deprecated NumPy 1.25) return np.find_common_type(types, []) /usr/lib64/python3.12/site-packages/pandas/core/dtypes/cast.py:1641: DeprecationWarning: np.find_common_type is deprecated. Please use `np.result_type` or `np.promote_types`. See https://numpy.org/devdocs/release/1.25.0-notes.html and the docs for more information. (Deprecated NumPy 1.25) return np.find_common_type(types, []) test_scratch_convert_int (integration.hdf5.test_scratch.TestScratchDataIO.test_scratch_convert_int) ... test_scratch_convert_list (integration.hdf5.test_scratch.TestScratchDataIO.test_scratch_convert_list) ... test_scratch_convert_ndarray (integration.hdf5.test_scratch.TestScratchDataIO.test_scratch_convert_ndarray) ... ---------------------------------------------------------------------- Ran 161 tests in 45.506s OK ====================================================================== 2023-11-23 16:37:08,620 - INFO - missing test case; should define in /builddir/build/BUILDROOT/python-pynwb-2.5.0-3.fc40.x86_64/usr/lib/python3.12/site-packages/pynwb/core.py ====================================================================== 2023-11-23 16:37:08,620 - INFO - missing test case; should define in /builddir/build/BUILDROOT/python-pynwb-2.5.0-3.fc40.x86_64/usr/lib/python3.12/site-packages/pynwb/core.py ====================================================================== 2023-11-23 16:37:08,620 - INFO - missing test case; should define in /builddir/build/BUILDROOT/python-pynwb-2.5.0-3.fc40.x86_64/usr/lib/python3.12/site-packages/pynwb/core.py ====================================================================== 2023-11-23 16:37:08,620 - INFO - missing test case; should define in /builddir/build/BUILDROOT/python-pynwb-2.5.0-3.fc40.x86_64/usr/lib/python3.12/site-packages/pynwb/base.py ====================================================================== 2023-11-23 16:37:08,620 - INFO - missing test case; should define in /builddir/build/BUILDROOT/python-pynwb-2.5.0-3.fc40.x86_64/usr/lib/python3.12/site-packages/pynwb/base.py ====================================================================== 2023-11-23 16:37:08,620 - INFO - missing test case; should define in /builddir/build/BUILDROOT/python-pynwb-2.5.0-3.fc40.x86_64/usr/lib/python3.12/site-packages/pynwb/base.py ====================================================================== 2023-11-23 16:37:08,620 - INFO - missing test case; should define in /builddir/build/BUILDROOT/python-pynwb-2.5.0-3.fc40.x86_64/usr/lib/python3.12/site-packages/pynwb/base.py ====================================================================== 2023-11-23 16:37:08,620 - INFO - missing test case; should define in /builddir/build/BUILDROOT/python-pynwb-2.5.0-3.fc40.x86_64/usr/lib/python3.12/site-packages/pynwb/ecephys.py ====================================================================== 2023-11-23 16:37:08,620 - INFO - missing test case; should define in /builddir/build/BUILDROOT/python-pynwb-2.5.0-3.fc40.x86_64/usr/lib/python3.12/site-packages/pynwb/icephys.py ====================================================================== 2023-11-23 16:37:08,620 - INFO - missing test case; should define in /builddir/build/BUILDROOT/python-pynwb-2.5.0-3.fc40.x86_64/usr/lib/python3.12/site-packages/pynwb/icephys.py ====================================================================== 2023-11-23 16:37:08,620 - INFO - missing test case; should define in /builddir/build/BUILDROOT/python-pynwb-2.5.0-3.fc40.x86_64/usr/lib/python3.12/site-packages/pynwb/icephys.py ====================================================================== 2023-11-23 16:37:08,620 - INFO - missing test case; should define in /builddir/build/BUILDROOT/python-pynwb-2.5.0-3.fc40.x86_64/usr/lib/python3.12/site-packages/pynwb/icephys.py ====================================================================== 2023-11-23 16:37:08,620 - INFO - missing test case; should define in /builddir/build/BUILDROOT/python-pynwb-2.5.0-3.fc40.x86_64/usr/lib/python3.12/site-packages/pynwb/icephys.py ====================================================================== 2023-11-23 16:37:08,620 - INFO - missing test case; should define in /builddir/build/BUILDROOT/python-pynwb-2.5.0-3.fc40.x86_64/usr/lib/python3.12/site-packages/pynwb/icephys.py ====================================================================== 2023-11-23 16:37:08,620 - INFO - missing test case; should define in /builddir/build/BUILDROOT/python-pynwb-2.5.0-3.fc40.x86_64/usr/lib/python3.12/site-packages/pynwb/icephys.py ====================================================================== 2023-11-23 16:37:08,620 - INFO - missing test case; should define in /builddir/build/BUILDROOT/python-pynwb-2.5.0-3.fc40.x86_64/usr/lib/python3.12/site-packages/pynwb/icephys.py ====================================================================== 2023-11-23 16:37:08,620 - INFO - missing test case; should define in /builddir/build/BUILDROOT/python-pynwb-2.5.0-3.fc40.x86_64/usr/lib/python3.12/site-packages/pynwb/image.py ====================================================================== 2023-11-23 16:37:08,620 - INFO - missing test case; should define in /builddir/build/BUILDROOT/python-pynwb-2.5.0-3.fc40.x86_64/usr/lib/python3.12/site-packages/pynwb/image.py ====================================================================== 2023-11-23 16:37:08,620 - INFO - missing test case; should define in /builddir/build/BUILDROOT/python-pynwb-2.5.0-3.fc40.x86_64/usr/lib/python3.12/site-packages/pynwb/image.py ====================================================================== 2023-11-23 16:37:08,620 - INFO - missing test case; should define in /builddir/build/BUILDROOT/python-pynwb-2.5.0-3.fc40.x86_64/usr/lib/python3.12/site-packages/pynwb/image.py ====================================================================== 2023-11-23 16:37:08,620 - INFO - missing test case; should define in /builddir/build/BUILDROOT/python-pynwb-2.5.0-3.fc40.x86_64/usr/lib/python3.12/site-packages/pynwb/image.py ====================================================================== 2023-11-23 16:37:08,620 - INFO - missing test case; should define in /builddir/build/BUILDROOT/python-pynwb-2.5.0-3.fc40.x86_64/usr/lib/python3.12/site-packages/pynwb/ophys.py ====================================================================== 2023-11-23 16:37:08,620 - INFO - missing test case; should define in /builddir/build/BUILDROOT/python-pynwb-2.5.0-3.fc40.x86_64/usr/lib/python3.12/site-packages/pynwb/ophys.py ====================================================================== 2023-11-23 16:37:08,620 - INFO - missing test case; should define in /builddir/build/BUILDROOT/python-pynwb-2.5.0-3.fc40.x86_64/usr/lib/python3.12/site-packages/pynwb/ophys.py ====================================================================== 2023-11-23 16:37:08,620 - INFO - missing test case; should define in /builddir/build/BUILDROOT/python-pynwb-2.5.0-3.fc40.x86_64/usr/lib/python3.12/site-packages/pynwb/ophys.py ====================================================================== 2023-11-23 16:37:08,620 - INFO - missing test case; should define in /builddir/build/BUILDROOT/python-pynwb-2.5.0-3.fc40.x86_64/usr/lib/python3.12/site-packages/pynwb/misc.py ====================================================================== 2023-11-23 16:37:08,620 - INFO - missing test case; should define in /builddir/build/BUILDROOT/python-pynwb-2.5.0-3.fc40.x86_64/usr/lib/python3.12/site-packages/pynwb/misc.py ====================================================================== 2023-11-23 16:37:08,620 - INFO - missing test case; should define in /builddir/build/BUILDROOT/python-pynwb-2.5.0-3.fc40.x86_64/usr/lib/python3.12/site-packages/pynwb/misc.py ====================================================================== 2023-11-23 16:37:08,620 - INFO - missing test case; should define in /builddir/build/BUILDROOT/python-pynwb-2.5.0-3.fc40.x86_64/usr/lib/python3.12/site-packages/pynwb/file.py ====================================================================== 2023-11-23 16:37:08,620 - INFO - missing test case; should define in /builddir/build/BUILDROOT/python-pynwb-2.5.0-3.fc40.x86_64/usr/lib/python3.12/site-packages/pynwb/behavior.py ====================================================================== 2023-11-23 16:37:08,620 - INFO - missing test case; should define in /builddir/build/BUILDROOT/python-pynwb-2.5.0-3.fc40.x86_64/usr/lib/python3.12/site-packages/pynwb/behavior.py ====================================================================== 2023-11-23 16:37:08,620 - INFO - missing test case; should define in /builddir/build/BUILDROOT/python-pynwb-2.5.0-3.fc40.x86_64/usr/lib/python3.12/site-packages/pynwb/behavior.py ====================================================================== 2023-11-23 16:37:08,620 - INFO - missing test case; should define in /builddir/build/BUILDROOT/python-pynwb-2.5.0-3.fc40.x86_64/usr/lib/python3.12/site-packages/pynwb/behavior.py ====================================================================== 2023-11-23 16:37:08,620 - INFO - missing test case; should define in /builddir/build/BUILDROOT/python-pynwb-2.5.0-3.fc40.x86_64/usr/lib/python3.12/site-packages/pynwb/behavior.py ====================================================================== 2023-11-23 16:37:08,620 - INFO - missing test case; should define in /builddir/build/BUILDROOT/python-pynwb-2.5.0-3.fc40.x86_64/usr/lib/python3.12/site-packages/pynwb/behavior.py ====================================================================== 2023-11-23 16:37:08,620 - INFO - missing test case; should define in /builddir/build/BUILDROOT/python-pynwb-2.5.0-3.fc40.x86_64/usr/lib/python3.12/site-packages/pynwb/behavior.py ====================================================================== 2023-11-23 16:37:08,620 - INFO - missing test case; should define in /builddir/build/BUILDROOT/python-pynwb-2.5.0-3.fc40.x86_64/usr/lib/python3.12/site-packages/pynwb/behavior.py ====================================================================== 2023-11-23 16:37:08,620 - INFO - missing test case; should define in /builddir/build/BUILDROOT/python-pynwb-2.5.0-3.fc40.x86_64/usr/lib/python3.12/site-packages/pynwb/retinotopy.py ====================================================================== 2023-11-23 16:37:08,620 - INFO - 38 classes missing integration tests in ui_write ====================================================================== 2023-11-23 16:37:08,620 - INFO - running integration utils tests test_get_nwb_version (integration.utils.test_io_utils.TestGetNWBVersion.test_get_nwb_version) Get the NWB version from a builder. ... test_get_nwb_version_20b (integration.utils.test_io_utils.TestGetNWBVersion.test_get_nwb_version_20b) Get the NWB version from a builder where version == "2.0b". ... test_get_nwb_version_missing (integration.utils.test_io_utils.TestGetNWBVersion.test_get_nwb_version_missing) Get the NWB version from a builder where the root builder does not have an nwb_version attribute. ... test_get_nwb_version_prerelease_false (integration.utils.test_io_utils.TestGetNWBVersion.test_get_nwb_version_prerelease_false) Get the NWB version from a builder. ... test_get_nwb_version_prerelease_true1 (integration.utils.test_io_utils.TestGetNWBVersion.test_get_nwb_version_prerelease_true1) Get the NWB version from a builder. ... test_get_nwb_version_prerelease_true2 (integration.utils.test_io_utils.TestGetNWBVersion.test_get_nwb_version_prerelease_true2) Get the NWB version from a builder. ... ---------------------------------------------------------------------- Ran 6 tests in 0.002s OK ====================================================================== 2023-11-23 16:37:08,625 - INFO - running validation tests test_validate_file_cached (validation.test_validate.TestValidateCLI.test_validate_file_cached) Test that validating a file with cached spec against its cached namespace succeeds. ... skipped 'Re-import issues' test_validate_file_cached_bad_ns (validation.test_validate.TestValidateCLI.test_validate_file_cached_bad_ns) Test that validating a file with cached spec against a specified, unknown namespace fails. ... test_validate_file_cached_core (validation.test_validate.TestValidateCLI.test_validate_file_cached_core) Test that validating a file with cached spec against the core namespace succeeds. ... test_validate_file_cached_extension (validation.test_validate.TestValidateCLI.test_validate_file_cached_extension) Test that validating a file with cached spec against the cached namespaces succeeds. ... skipped 'Re-import issues' test_validate_file_cached_extension_pass_ns (validation.test_validate.TestValidateCLI.test_validate_file_cached_extension_pass_ns) Test that validating a file with cached spec against the extension namespace succeeds. ... skipped 'Re-import issues' test_validate_file_cached_hdmf_common (validation.test_validate.TestValidateCLI.test_validate_file_cached_hdmf_common) Test that validating a file with cached spec against the hdmf-common namespace fails. ... test_validate_file_cached_ignore (validation.test_validate.TestValidateCLI.test_validate_file_cached_ignore) Test that validating a file with cached spec against the core namespace succeeds. ... skipped 'Re-import issues' test_validate_file_invalid (validation.test_validate.TestValidateCLI.test_validate_file_invalid) Test that validating an invalid file outputs errors. ... test_validate_file_list_namespaces_core (validation.test_validate.TestValidateCLI.test_validate_file_list_namespaces_core) Test listing namespaces from a file ... skipped 'Re-import issues' test_validate_file_list_namespaces_extension (validation.test_validate.TestValidateCLI.test_validate_file_list_namespaces_extension) Test listing namespaces from a file with an extension ... skipped 'Re-import issues' test_validate_file_no_cache (validation.test_validate.TestValidateCLI.test_validate_file_no_cache) Test that validating a file with no cached spec against the core namespace succeeds. ... test_validate_file_no_cache_bad_ns (validation.test_validate.TestValidateCLI.test_validate_file_no_cache_bad_ns) Test that validating a file with no cached spec against a specified, unknown namespace fails. ... test_validate_file_cached_core (validation.test_validate.TestValidateFunction.test_validate_file_cached_core) Test that validating a file with cached core spec with verbose=False. ... test_validate_file_cached_extension (validation.test_validate.TestValidateFunction.test_validate_file_cached_extension) Test that validating a file with cached extension spec against the core ... skipped 'Re-import issues' test_validate_file_cached_no_cache_bad_ns (validation.test_validate.TestValidateFunction.test_validate_file_cached_no_cache_bad_ns) Test that validating a file with no cached namespace, a namespace that is not found, and verbose=False. ... test_validate_io_cached (validation.test_validate.TestValidateFunction.test_validate_io_cached) Test that validating a file with cached spec against its cached namespace succeeds. ... test_validate_io_cached_bad_ns (validation.test_validate.TestValidateFunction.test_validate_io_cached_bad_ns) Test that validating a file with cached spec against a specified, unknown namespace fails. ... test_validate_io_cached_core_with_io (validation.test_validate.TestValidateFunction.test_validate_io_cached_core_with_io) For back-compatability, test that validating a file with cached extension spec against the core ... test_validate_io_cached_extension (validation.test_validate.TestValidateFunction.test_validate_io_cached_extension) Test that validating a file with cached spec against its cached namespaces succeeds. ... test_validate_io_cached_extension_pass_ns (validation.test_validate.TestValidateFunction.test_validate_io_cached_extension_pass_ns) Test that validating a file with cached extension spec against the extension namespace succeeds. ... test_validate_io_cached_hdmf_common (validation.test_validate.TestValidateFunction.test_validate_io_cached_hdmf_common) Test that validating a file with cached spec against the hdmf-common namespace fails. ... test_validate_io_no_cache (validation.test_validate.TestValidateFunction.test_validate_io_no_cache) Test that validating a file with no cached spec against the core namespace succeeds. ... test_validate_io_no_cache_bad_ns (validation.test_validate.TestValidateFunction.test_validate_io_no_cache_bad_ns) Test that validating a file with no cached spec against a specified, unknown namespace fails. ... ---------------------------------------------------------------------- Ran 23 tests in 14.874s OK (skipped=7) ====================================================================== 2023-11-23 16:37:23,519 - INFO - running pynwb backwards compatibility tests test_outer_import_structure (back_compat.test_import_structure.TestImportStructure.test_outer_import_structure) ... test_read (back_compat.test_read.TestReadOldVersions.test_read) Test reading and validating all NWB files in the same folder as this file. ... test_read_imageseries_no_data (back_compat.test_read.TestReadOldVersions.test_read_imageseries_no_data) Test that an ImageSeries written without data is read with data set to the default value. ... test_read_imageseries_no_unit (back_compat.test_read.TestReadOldVersions.test_read_imageseries_no_unit) Test that an ImageSeries written without unit is read with unit set to the default value. ... test_read_imageseries_non_external_format (back_compat.test_read.TestReadOldVersions.test_read_imageseries_non_external_format) Test that reading an ImageSeries with an inconsistent format does not change the value. ... test_read_imageseries_nonmatch_starting_frame (back_compat.test_read.TestReadOldVersions.test_read_imageseries_nonmatch_starting_frame) Test that reading an ImageSeries with an inconsistent starting_frame does not change the value. ... test_read_subject_no_age__reference (back_compat.test_read.TestReadOldVersions.test_read_subject_no_age__reference) Test that reading a Subject without an age__reference set with NWB schema 2.5.0 sets the value to None ... test_read_timeseries_no_data (back_compat.test_read.TestReadOldVersions.test_read_timeseries_no_data) Test that a TimeSeries written without data is read with data set to the default value. ... test_read_timeseries_no_unit (back_compat.test_read.TestReadOldVersions.test_read_timeseries_no_unit) Test that an ImageSeries written without unit is read with unit set to the default value. ... ---------------------------------------------------------------------- Ran 9 tests in 2.953s OK ====================================================================== 2023-11-23 16:37:26,476 - INFO - Ran 538 tests - OK + RPM_EC=0 ++ jobs -p + exit 0 Processing files: python3-pynwb-2.5.0-3.fc40.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.pM2fNR + umask 022 + cd /builddir/build/BUILD + cd pynwb-2.5.0 + DOCDIR=/builddir/build/BUILDROOT/python-pynwb-2.5.0-3.fc40.x86_64/usr/share/doc/python3-pynwb + export LC_ALL= + LC_ALL= + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/python-pynwb-2.5.0-3.fc40.x86_64/usr/share/doc/python3-pynwb + cp -pr /builddir/build/BUILD/pynwb-2.5.0/README.rst /builddir/build/BUILDROOT/python-pynwb-2.5.0-3.fc40.x86_64/usr/share/doc/python3-pynwb + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.MZoFGW + umask 022 + cd /builddir/build/BUILD + cd pynwb-2.5.0 + LICENSEDIR=/builddir/build/BUILDROOT/python-pynwb-2.5.0-3.fc40.x86_64/usr/share/licenses/python3-pynwb + export LC_ALL= + LC_ALL= + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/python-pynwb-2.5.0-3.fc40.x86_64/usr/share/licenses/python3-pynwb + cp -pr /builddir/build/BUILD/pynwb-2.5.0/license.txt /builddir/build/BUILDROOT/python-pynwb-2.5.0-3.fc40.x86_64/usr/share/licenses/python3-pynwb + RPM_EC=0 ++ jobs -p + exit 0 Provides: python-pynwb = 2.5.0-3.fc40 python3-pynwb = 2.5.0-3.fc40 python3.12-pynwb = 2.5.0-3.fc40 python3.12dist(pynwb) = 2.5 python3dist(pynwb) = 2.5 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: python(abi) = 3.12 python3.12dist(h5py) >= 2.10 python3.12dist(hdmf) >= 3.9 python3.12dist(numpy) >= 1.16 python3.12dist(pandas) >= 1.1.5 python3.12dist(python-dateutil) >= 2.7.3 python3.12dist(setuptools) Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/python-pynwb-2.5.0-3.fc40.x86_64 Wrote: /builddir/build/SRPMS/python-pynwb-2.5.0-3.fc40.src.rpm Wrote: /builddir/build/RPMS/python3-pynwb-2.5.0-3.fc40.noarch.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.0vUbm5 + umask 022 + cd /builddir/build/BUILD + cd pynwb-2.5.0 + /usr/bin/rm -rf /builddir/build/BUILDROOT/python-pynwb-2.5.0-3.fc40.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.Vjge0g + umask 022 + cd /builddir/build/BUILD + rm -rf /builddir/build/BUILD/pynwb-2.5.0-SPECPARTS + rm -rf pynwb-2.5.0 pynwb-2.5.0.gemspec + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild python-pynwb-2.5.0-3.fc40.src.rpm Finish: build phase for python-pynwb-2.5.0-3.fc40.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1700757302.802967/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-x86_64-1700757302.802967/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-x86_64-1700757302.802967/root/var/log/dnf.log INFO: Done(/var/lib/copr-rpmbuild/results/python-pynwb-2.5.0-3.fc40.src.rpm) Config(child) 1 minutes 49 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "python3-pynwb", "epoch": null, "version": "2.5.0", "release": "3.fc40", "arch": "noarch" }, { "name": "python-pynwb", "epoch": null, "version": "2.5.0", "release": "3.fc40", "arch": "src" } ] } RPMResults finished