Warning: Permanently added '3.216.28.179' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/8258505-fedora-rawhide-x86_64 --chroot fedora-rawhide-x86_64 Version: 1.1 PID: 29725 Logging PID: 29726 Task: {'allow_user_ssh': False, 'appstream': False, 'background': True, 'build_id': 8258505, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': '7451f7dd22db9ab32d2a513680a15ce117d59266', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/thrnciar/python-sphinx/python-pypet', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'python-pypet', 'package_version': '0.6.1-7', 'project_dirname': 'python-sphinx', 'project_name': 'python-sphinx', 'project_owner': 'thrnciar', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/thrnciar/python-sphinx/fedora-rawhide-x86_64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}, {'baseurl': 'http://kojipkgs.fedoraproject.org/repos/rawhide/latest/$basearch/', 'id': 'http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch', 'name': 'Additional repo http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch'}], 'sandbox': 'thrnciar/python-sphinx--thrnciar', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'storage': 0, 'submitter': 'thrnciar', 'tags': [], 'task_id': '8258505-fedora-rawhide-x86_64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/thrnciar/python-sphinx/python-pypet /var/lib/copr-rpmbuild/workspace/workdir-wd1kuho5/python-pypet --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/thrnciar/python-sphinx/python-pypet', '/var/lib/copr-rpmbuild/workspace/workdir-wd1kuho5/python-pypet', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-wd1kuho5/python-pypet'... Running: git checkout 7451f7dd22db9ab32d2a513680a15ce117d59266 -- cmd: ['git', 'checkout', '7451f7dd22db9ab32d2a513680a15ce117d59266', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-wd1kuho5/python-pypet rc: 0 stdout: stderr: Note: switching to '7451f7dd22db9ab32d2a513680a15ce117d59266'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 7451f7d automatic import of python-pypet Running: dist-git-client sources cmd: ['dist-git-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-wd1kuho5/python-pypet rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading pypet-0.6.1.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o pypet-0.6.1.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/thrnciar/python-sphinx/python-pypet/pypet-0.6.1.tar.gz/md5/210b7156db88b13628a4aeec36693e74/pypet-0.6.1.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 7079k 100 7079k 0 0 23.6M 0 --:--:-- --:--:-- --:--:-- 23.6M INFO: Reading stdout from command: md5sum pypet-0.6.1.tar.gz /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-wd1kuho5/python-pypet/python-pypet.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-wd1kuho5/python-pypet --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1731606514.528742 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.9 starting (python version = 3.12.1, NVR = mock-5.9-1.fc39), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-wd1kuho5/python-pypet/python-pypet.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-wd1kuho5/python-pypet --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1731606514.528742 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-wd1kuho5/python-pypet/python-pypet.spec) Config(fedora-rawhide-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 5.9 INFO: Mock Version: 5.9 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1731606514.528742/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using bootstrap image: registry.fedoraproject.org/fedora:rawhide INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide INFO: Copy content of container registry.fedoraproject.org/fedora:rawhide to /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1731606514.528742/root INFO: Checking that registry.fedoraproject.org/fedora:rawhide image matches host's architecture INFO: mounting registry.fedoraproject.org/fedora:rawhide with podman image mount INFO: image registry.fedoraproject.org/fedora:rawhide as /var/lib/containers/storage/overlay/5347917ae9d729c2f508e336708d4950b8627ff5f9468c4f4fd9a9786b2bbf71/merged INFO: umounting image registry.fedoraproject.org/fedora:rawhide (/var/lib/containers/storage/overlay/5347917ae9d729c2f508e336708d4950b8627ff5f9468c4f4fd9a9786b2bbf71/merged) with podman image umount INFO: Package manager dnf5 detected and used (fallback) INFO: Not updating bootstrap chroot, bootstrap_image_ready=True Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1731606514.528742/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.20.0-1.fc42.x86_64 rpm-sequoia-1.7.0-2.fc41.x86_64 dnf5-5.2.7.0-1.fc42.x86_64 dnf5-plugins-5.2.7.0-1.fc42.x86_64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: fedora 100% | 37.1 KiB/s | 9.9 KiB | 00m00s Copr repository 100% | 66.7 KiB/s | 1.5 KiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 201.5 KiB/s | 3.8 KiB | 00m00s Copr repository 100% | 43.6 MiB/s | 1.3 MiB | 00m00s Repositories loaded. 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http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.3 MiB debugedit x86_64 5.1-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 192.7 KiB dwz x86_64 0.15-8.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 299.2 KiB ed x86_64 1.20.2-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 146.9 KiB efi-srpm-macros noarch 5-12.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 40.1 KiB elfutils x86_64 0.192-6.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.6 MiB elfutils-debuginfod-client x86_64 0.192-6.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 80.4 KiB elfutils-default-yama-scope noarch 0.192-6.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 KiB elfutils-libelf x86_64 0.192-6.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 MiB elfutils-libs x86_64 0.192-6.fc42 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util-linux-core x86_64 2.40.2-8.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.5 MiB xxhash-libs x86_64 0.8.2-4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 88.4 KiB xz-libs x86_64 1:5.6.3-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 218.4 KiB zig-srpm-macros noarch 1-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 KiB zip x86_64 3.0-41.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 703.2 KiB zlib-ng-compat x86_64 2.2.2-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 134.0 KiB zstd x86_64 1.5.6-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 MiB Installing groups: Buildsystem building group Transaction Summary: Installing: 213 packages Total size of inbound packages is 61 MiB. Need to download 0 B. After this operation, 207 MiB extra will be used (install 207 MiB, remove 0 B). [1/1] tar-2:1.35-4.fc41.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded -------------------------------------------------------------------------------- [1/1] Total 100% | 0.0 B/s | 0.0 B | 00m00s [1/2] bzip2-0:1.0.8-19.fc41.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded -------------------------------------------------------------------------------- [2/2] Total 100% | 0.0 B/s | 0.0 B | 00m00s [1/3] redhat-rpm-config-0:296-1.fc42.no 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded -------------------------------------------------------------------------------- [3/3] Total 100% | 0.0 B/s | 0.0 B | 00m00s [1/4] rpm-build-0:4.20.0-1.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded -------------------------------------------------------------------------------- [4/4] Total 100% | 0.0 B/s | 0.0 B | 00m00s [1/5] unzip-0:6.0-64.fc41.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded 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99.1 MiB/s | 202.9 KiB | 00m00s [211/215] Installing pyproject-srpm-mac 100% | 2.4 MiB/s | 2.5 KiB | 00m00s [212/215] Installing util-linux-0:2.40. 100% | 185.8 MiB/s | 3.7 MiB | 00m00s [213/215] Installing authselect-0:1.5.0 100% | 79.1 MiB/s | 161.9 KiB | 00m00s [214/215] Installing which-0:2.21-42.fc 100% | 80.5 MiB/s | 82.4 KiB | 00m00s [215/215] Installing info-0:7.1.1-2.fc4 100% | 234.0 KiB/s | 362.2 KiB | 00m02s Warning: skipped PGP checks for 213 packages from repository: http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch Complete! Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: add-determinism-0.4.3-1.fc42.x86_64 alternatives-1.30-1.fc41.x86_64 ansible-srpm-macros-1-16.fc41.noarch audit-libs-4.0.2-1.fc41.x86_64 authselect-1.5.0-8.fc42.x86_64 authselect-libs-1.5.0-8.fc42.x86_64 basesystem-11-21.fc41.noarch bash-5.2.37-1.fc42.x86_64 binutils-2.43.50-7.fc42.x86_64 build-reproducibility-srpm-macros-0.4.3-1.fc42.noarch bzip2-1.0.8-19.fc41.x86_64 bzip2-libs-1.0.8-19.fc41.x86_64 ca-certificates-2024.2.69_v8.0.401-2.fc42.noarch coreutils-9.5-11.fc42.x86_64 coreutils-common-9.5-11.fc42.x86_64 cpio-2.15-2.fc41.x86_64 cracklib-2.9.11-6.fc41.x86_64 crypto-policies-20241106-1.git35892de.fc42.noarch curl-8.10.1-2.fc42.x86_64 cyrus-sasl-lib-2.1.28-27.fc41.x86_64 debugedit-5.1-1.fc42.x86_64 diffutils-3.10-8.fc41.x86_64 dwz-0.15-8.fc42.x86_64 ed-1.20.2-2.fc41.x86_64 efi-srpm-macros-5-12.fc41.noarch elfutils-0.192-6.fc42.x86_64 elfutils-debuginfod-client-0.192-6.fc42.x86_64 elfutils-default-yama-scope-0.192-6.fc42.noarch elfutils-libelf-0.192-6.fc42.x86_64 elfutils-libs-0.192-6.fc42.x86_64 fedora-gpg-keys-42-0.3.noarch fedora-release-42-0.8.noarch fedora-release-common-42-0.8.noarch fedora-release-identity-basic-42-0.8.noarch fedora-repos-42-0.3.noarch fedora-repos-rawhide-42-0.3.noarch file-5.45-7.fc41.x86_64 file-libs-5.45-7.fc41.x86_64 filesystem-3.18-29.fc42.x86_64 findutils-4.10.0-4.fc41.x86_64 fonts-srpm-macros-2.0.5-17.fc41.noarch forge-srpm-macros-0.4.0-1.fc42.noarch fpc-srpm-macros-1.3-13.fc41.noarch gawk-5.3.0-4.fc41.x86_64 gdb-minimal-15.2-3.fc42.x86_64 gdbm-1.23-7.fc41.x86_64 gdbm-libs-1.23-7.fc41.x86_64 ghc-srpm-macros-1.9.2-1.fc42.noarch glibc-2.40.9000-18.fc42.x86_64 glibc-common-2.40.9000-18.fc42.x86_64 glibc-gconv-extra-2.40.9000-18.fc42.x86_64 glibc-minimal-langpack-2.40.9000-18.fc42.x86_64 gmp-6.3.0-2.fc41.x86_64 gnat-srpm-macros-6-6.fc41.noarch go-srpm-macros-3.6.0-3.fc41.noarch grep-3.11-9.fc41.x86_64 groff-base-1.23.0-7.fc41.x86_64 gzip-1.13-2.fc41.x86_64 info-7.1.1-2.fc42.x86_64 jansson-2.14-1.fc42.x86_64 json-c-0.18-1.fc42.x86_64 kernel-srpm-macros-1.0-24.fc41.noarch keyutils-libs-1.6.3-4.fc41.x86_64 krb5-libs-1.21.3-3.fc42.x86_64 libacl-2.3.2-2.fc41.x86_64 libarchive-3.7.7-1.fc42.x86_64 libattr-2.5.2-4.fc41.x86_64 libblkid-2.40.2-8.fc42.x86_64 libbrotli-1.1.0-5.fc41.x86_64 libcap-2.71-1.fc42.x86_64 libcap-ng-0.8.5-3.fc41.x86_64 libcom_err-1.47.1-6.fc42.x86_64 libcurl-8.10.1-2.fc42.x86_64 libeconf-0.7.4-3.fc42.x86_64 libevent-2.1.12-14.fc41.x86_64 libfdisk-2.40.2-8.fc42.x86_64 libffi-3.4.6-3.fc42.x86_64 libgcc-14.2.1-6.fc42.x86_64 libgomp-14.2.1-6.fc42.x86_64 libidn2-2.3.7-2.fc41.x86_64 libmount-2.40.2-8.fc42.x86_64 libnghttp2-1.64.0-1.fc42.x86_64 libnsl2-2.0.1-2.fc41.x86_64 libpkgconf-2.3.0-1.fc42.x86_64 libpsl-0.21.5-4.fc41.x86_64 libpwquality-1.4.5-11.fc41.x86_64 libselinux-3.7-6.fc42.x86_64 libsemanage-3.7-3.fc42.x86_64 libsepol-3.7-3.fc42.x86_64 libsmartcols-2.40.2-8.fc42.x86_64 libssh-0.11.1-1.fc42.x86_64 libssh-config-0.11.1-1.fc42.noarch libstdc++-14.2.1-6.fc42.x86_64 libtasn1-4.19.0-9.fc41.x86_64 libtirpc-1.3.6-1.fc42.x86_64 libtool-ltdl-2.4.7-12.fc41.x86_64 libunistring-1.1-8.fc41.x86_64 libuuid-2.40.2-8.fc42.x86_64 libverto-0.3.2-9.fc41.x86_64 libxcrypt-4.4.36-10.fc42.x86_64 libxml2-2.12.8-2.fc41.x86_64 libzstd-1.5.6-2.fc41.x86_64 lua-libs-5.4.7-1.fc42.x86_64 lua-srpm-macros-1-14.fc41.noarch lz4-libs-1.10.0-1.fc41.x86_64 mpfr-4.2.1-5.fc41.x86_64 ncurses-6.5-2.20240629.fc41.x86_64 ncurses-base-6.5-2.20240629.fc41.noarch ncurses-libs-6.5-2.20240629.fc41.x86_64 ocaml-srpm-macros-10-3.fc41.noarch openblas-srpm-macros-2-18.fc41.noarch openldap-2.6.8-5.fc41.x86_64 openssl-libs-3.2.2-8.fc42.x86_64 p11-kit-0.25.5-4.fc42.x86_64 p11-kit-trust-0.25.5-4.fc42.x86_64 package-notes-srpm-macros-0.5-12.fc41.noarch pam-1.7.0-2.fc42.x86_64 pam-libs-1.7.0-2.fc42.x86_64 patch-2.7.6-25.fc41.x86_64 pcre2-10.44-1.fc41.1.x86_64 pcre2-syntax-10.44-1.fc41.1.noarch perl-AutoLoader-5.74-512.fc42.noarch perl-B-1.89-512.fc42.x86_64 perl-Carp-1.54-511.fc41.noarch perl-Class-Struct-0.68-512.fc42.noarch perl-Data-Dumper-2.189-512.fc41.x86_64 perl-Digest-1.20-511.fc41.noarch perl-Digest-MD5-2.59-5.fc41.x86_64 perl-DynaLoader-1.56-512.fc42.x86_64 perl-Encode-3.21-511.fc41.x86_64 perl-Errno-1.38-512.fc42.x86_64 perl-Exporter-5.78-511.fc41.noarch perl-Fcntl-1.18-512.fc42.x86_64 perl-File-Basename-2.86-512.fc42.noarch perl-File-Path-2.18-511.fc41.noarch perl-File-Temp-0.231.100-511.fc41.noarch perl-File-stat-1.14-512.fc42.noarch perl-FileHandle-2.05-512.fc42.noarch perl-Getopt-Long-2.58-2.fc41.noarch perl-Getopt-Std-1.14-512.fc42.noarch perl-HTTP-Tiny-0.090-1.fc42.noarch perl-IO-1.55-512.fc42.x86_64 perl-IO-Socket-IP-0.42-512.fc41.noarch perl-IO-Socket-SSL-2.089-1.fc42.noarch perl-IPC-Open3-1.22-512.fc42.noarch perl-MIME-Base32-1.303-21.fc41.noarch perl-MIME-Base64-3.16-511.fc41.x86_64 perl-Net-SSLeay-1.94-7.fc41.x86_64 perl-POSIX-2.20-512.fc42.x86_64 perl-PathTools-3.91-511.fc41.x86_64 perl-Pod-Escapes-1.07-511.fc41.noarch perl-Pod-Perldoc-3.28.01-512.fc41.noarch perl-Pod-Simple-3.45-511.fc41.noarch perl-Pod-Usage-2.03-511.fc41.noarch perl-Scalar-List-Utils-1.68-1.fc42.x86_64 perl-SelectSaver-1.02-512.fc42.noarch perl-Socket-2.038-511.fc41.x86_64 perl-Storable-3.32-511.fc41.x86_64 perl-Symbol-1.09-512.fc42.noarch perl-Term-ANSIColor-5.01-512.fc41.noarch perl-Term-Cap-1.18-511.fc41.noarch perl-Text-ParseWords-3.31-511.fc41.noarch perl-Text-Tabs+Wrap-2024.001-511.fc41.noarch perl-Time-Local-1.350-511.fc41.noarch perl-URI-5.31-1.fc42.noarch perl-base-2.27-512.fc42.noarch perl-constant-1.33-512.fc41.noarch perl-if-0.61.000-512.fc42.noarch perl-interpreter-5.40.0-512.fc42.x86_64 perl-libnet-3.15-512.fc41.noarch perl-libs-5.40.0-512.fc42.x86_64 perl-locale-1.12-512.fc42.noarch perl-mro-1.29-512.fc42.x86_64 perl-overload-1.37-512.fc42.noarch perl-overloading-0.02-512.fc42.noarch perl-parent-0.242-1.fc42.noarch perl-podlators-6.0.2-2.fc41.noarch perl-srpm-macros-1-56.fc41.noarch perl-vars-1.05-512.fc42.noarch pkgconf-2.3.0-1.fc42.x86_64 pkgconf-m4-2.3.0-1.fc42.noarch pkgconf-pkg-config-2.3.0-1.fc42.x86_64 popt-1.19-7.fc41.x86_64 publicsuffix-list-dafsa-20240107-4.fc41.noarch pyproject-srpm-macros-1.16.2-1.fc42.noarch python-srpm-macros-3.13-3.fc41.noarch qt5-srpm-macros-5.15.15-1.fc42.noarch qt6-srpm-macros-6.8.0-1.fc42.noarch readline-8.2-11.fc42.x86_64 redhat-rpm-config-296-1.fc42.noarch rpm-4.20.0-1.fc42.x86_64 rpm-build-4.20.0-1.fc42.x86_64 rpm-build-libs-4.20.0-1.fc42.x86_64 rpm-libs-4.20.0-1.fc42.x86_64 rpm-sequoia-1.7.0-2.fc41.x86_64 rust-srpm-macros-26.3-3.fc42.noarch sed-4.9-3.fc41.x86_64 setup-2.15.0-5.fc41.noarch shadow-utils-4.16.0-7.fc42.x86_64 sqlite-libs-3.47.0-1.fc42.x86_64 systemd-libs-257~rc1-2.fc42.x86_64 tar-1.35-4.fc41.x86_64 unzip-6.0-64.fc41.x86_64 util-linux-2.40.2-8.fc42.x86_64 util-linux-core-2.40.2-8.fc42.x86_64 which-2.21-42.fc41.x86_64 xxhash-libs-0.8.2-4.fc42.x86_64 xz-5.6.3-2.fc42.x86_64 xz-libs-5.6.3-2.fc42.x86_64 zig-srpm-macros-1-3.fc41.noarch zip-3.0-41.fc41.x86_64 zlib-ng-compat-2.2.2-1.fc42.x86_64 zstd-1.5.6-2.fc41.x86_64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1721347200 Wrote: /builddir/build/SRPMS/python-pypet-0.6.1-7.fc42.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1731606514.528742/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-wd1kuho5/python-pypet/python-pypet.spec) Config(child) 0 minutes 12 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/python-pypet-0.6.1-7.fc42.src.rpm) Config(fedora-rawhide-x86_64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1731606514.528742/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1731606514.528742/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1731606514.528742/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.20.0-1.fc42.x86_64 rpm-sequoia-1.7.0-2.fc41.x86_64 dnf5-5.2.7.0-1.fc42.x86_64 dnf5-plugins-5.2.7.0-1.fc42.x86_64 Finish: chroot init Start: build phase for python-pypet-0.6.1-7.fc42.src.rpm Start: build setup for python-pypet-0.6.1-7.fc42.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1721347200 Wrote: /builddir/build/SRPMS/python-pypet-0.6.1-7.fc42.src.rpm Updating and loading repositories: fedora 100% | 41.3 KiB/s | 9.9 KiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 153.2 KiB/s | 3.8 KiB | 00m00s Copr repository 100% | 49.5 KiB/s | 1.5 KiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing: hdf5 x86_64 1.14.5-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 7.1 MiB latexmk noarch 4.85-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 991.3 KiB make x86_64 1:4.4.1-9.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 MiB python3-brian2 x86_64 2.7.1-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 9.3 MiB python3-deap x86_64 1.4.1-7.fc42 copr_base 892.7 KiB python3-devel x86_64 3.13.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 MiB python3-matplotlib x86_64 3.9.1-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 21.1 MiB python3-sphinx noarch 1:8.1.3-1.fc42 copr_base 11.1 MiB python3-sphinx-latex noarch 1:8.1.3-1.fc42 copr_base 0.0 B Installing dependencies: abattis-cantarell-vf-fonts noarch 0.301-13.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 192.7 KiB adobe-mappings-cmap noarch 20231115-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 15.2 MiB adobe-mappings-cmap-deprecated noarch 20231115-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 582.1 KiB adobe-mappings-pdf noarch 20190401-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.4 MiB avahi-libs x86_64 0.8-30.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 174.2 KiB biber noarch 2.19-6.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.3 MiB cairo x86_64 1.18.0-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 MiB cups-filesystem noarch 1:2.4.11-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 0.0 B cups-libs x86_64 1:2.4.11-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 623.6 KiB dbus-libs x86_64 1:1.14.10-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 368.9 KiB default-fonts-core-sans noarch 4.2-2.fc42 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urw-base35-bookman-fonts noarch 20200910-23.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.4 MiB urw-base35-c059-fonts noarch 20200910-23.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.4 MiB urw-base35-d050000l-fonts noarch 20200910-23.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 84.3 KiB urw-base35-fonts noarch 20200910-23.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 5.3 KiB urw-base35-fonts-common noarch 20200910-23.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 37.4 KiB urw-base35-gothic-fonts noarch 20200910-23.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 MiB urw-base35-nimbus-mono-ps-fonts noarch 20200910-23.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.0 MiB urw-base35-nimbus-roman-fonts noarch 20200910-23.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.4 MiB urw-base35-nimbus-sans-fonts noarch 20200910-23.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.4 MiB urw-base35-p052-fonts noarch 20200910-23.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.5 MiB urw-base35-standard-symbols-ps-fonts noarch 20200910-23.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 64.9 KiB urw-base35-z003-fonts noarch 20200910-23.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 390.8 KiB xdg-utils noarch 1.2.1-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 346.3 KiB xml-common noarch 0.6.3-65.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 78.4 KiB xpdf-libs x86_64 1:4.05-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 MiB zziplib x86_64 0.13.74-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 233.7 KiB Transaction Summary: Installing: 594 packages Total size of inbound packages is 438 MiB. Need to download 20 MiB. After this operation, 1 GiB extra will be used (install 1 GiB, remove 0 B). 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Installing perl-Business-ISMN 100% | 0.0 B/s | 37.7 KiB | 00m00s [159/596] Installing perl-File-Compare- 100% | 0.0 B/s | 6.1 KiB | 00m00s [160/596] Installing perl-Class-Singlet 100% | 0.0 B/s | 41.4 KiB | 00m00s [161/596] Installing perl-Digest-SHA-1: 100% | 116.3 MiB/s | 119.1 KiB | 00m00s [162/596] Installing perl-Digest-HMAC-0 100% | 0.0 B/s | 31.5 KiB | 00m00s [163/596] Installing perl-NTLM-0:1.09-3 100% | 0.0 B/s | 32.7 KiB | 00m00s [164/596] Installing perl-Authen-SASL-0 100% | 118.9 MiB/s | 121.8 KiB | 00m00s [165/596] Installing perl-HTML-Tagset-0 100% | 0.0 B/s | 19.7 KiB | 00m00s [166/596] Installing perl-IO-HTML-0:1.0 100% | 0.0 B/s | 46.8 KiB | 00m00s [167/596] Installing perl-Compress-Raw- 100% | 72.0 MiB/s | 73.7 KiB | 00m00s [168/596] Installing perl-IO-Compress-0 100% | 257.8 MiB/s | 1.0 MiB | 00m00s [169/596] Installing perl-Net-HTTP-0:6. 100% | 75.4 MiB/s | 77.2 KiB | 00m00s [170/596] Installing perl-ExtUtils-MM-U 100% | 0.0 B/s | 3.7 KiB | 00m00s [171/596] Installing perl-IPC-Cmd-2:1.0 100% | 0.0 B/s | 85.9 KiB | 00m00s [172/596] Installing perl-Convert-ASN1- 100% | 169.3 MiB/s | 173.4 KiB | 00m00s [173/596] Installing mailcap-0:2.1.54-7 100% | 0.0 B/s | 87.1 KiB | 00m00s [174/596] Installing perl-LWP-MediaType 100% | 0.0 B/s | 80.5 KiB | 00m00s [175/596] Installing perl-HTTP-Message- 100% | 214.7 MiB/s | 219.9 KiB | 00m00s [176/596] Installing perl-HTML-Parser-0 100% | 281.1 MiB/s | 287.8 KiB | 00m00s [177/596] Installing perl-HTTP-Negotiat 100% | 0.0 B/s | 28.7 KiB | 00m00s [178/596] Installing perltidy-0:2024090 100% | 486.0 MiB/s | 3.9 MiB | 00m00s [179/596] Installing perl-Eval-Closure- 100% | 0.0 B/s | 34.6 KiB | 00m00s [180/596] Installing perl-Params-Valida 100% | 92.0 MiB/s | 94.2 KiB | 00m00s [181/596] Installing perl-Specio-0:0.48 100% | 56.1 MiB/s | 344.7 KiB | 00m00s [182/596] Installing perl-DateTime-Loca 100% | 348.5 MiB/s | 23.0 MiB | 00m00s [183/596] Installing perl-DateTime-Time 100% | 381.4 MiB/s | 6.1 MiB | 00m00s 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00m00s [248/596] Installing texlive-graphics-1 100% | 125.6 MiB/s | 128.7 KiB | 00m00s [249/596] Installing texlive-tools-11:s 100% | 402.1 MiB/s | 411.7 KiB | 00m00s [250/596] Installing texlive-xkeyval-11 100% | 0.0 B/s | 71.6 KiB | 00m00s [251/596] Installing texlive-geometry-1 100% | 0.0 B/s | 50.2 KiB | 00m00s [252/596] Installing texlive-colortbl-1 100% | 0.0 B/s | 21.8 KiB | 00m00s [253/596] Installing texlive-l3backend- 100% | 553.5 MiB/s | 1.1 MiB | 00m00s [254/596] Installing texlive-natbib-11: 100% | 0.0 B/s | 134.2 KiB | 00m00s [255/596] Installing texlive-uniquecoun 100% | 306.1 MiB/s | 313.5 KiB | 00m00s [256/596] Installing texlive-marvosym-1 100% | 183.9 MiB/s | 188.3 KiB | 00m00s [257/596] Installing texlive-palatino-1 100% | 224.1 MiB/s | 1.1 MiB | 00m00s [258/596] Installing texlive-booktabs-1 100% | 0.0 B/s | 19.0 KiB | 00m00s [259/596] Installing texlive-footmisc-1 100% | 0.0 B/s | 65.6 KiB | 00m00s [260/596] Installing texlive-multido-11 100% | 0.0 B/s | 19.6 KiB 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Finish: build setup for python-pypet-0.6.1-7.fc42.src.rpm Start: rpmbuild python-pypet-0.6.1-7.fc42.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1721347200 Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.sJCi2A + umask 022 + cd /builddir/build/BUILD/python-pypet-0.6.1-build + test -d /builddir/build/BUILD/python-pypet-0.6.1-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/python-pypet-0.6.1-build + /usr/bin/rm -rf /builddir/build/BUILD/python-pypet-0.6.1-build + /usr/bin/mkdir -p /builddir/build/BUILD/python-pypet-0.6.1-build + /usr/bin/mkdir -p /builddir/build/BUILD/python-pypet-0.6.1-build/SPECPARTS + RPM_EC=0 ++ jobs -p + exit 0 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.d21fL6 + umask 022 + cd /builddir/build/BUILD/python-pypet-0.6.1-build + cd /builddir/build/BUILD/python-pypet-0.6.1-build + rm -rf pypet-0.6.1 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/pypet-0.6.1.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd pypet-0.6.1 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/69.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/70.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/71.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/73.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + rm -rf pypet.egg-info + find . -type f -name .gitignore -print -delete ./pylint/.gitignore ./examples/example_24_large_scale_brian2_simulation/.gitignore ./examples/example_17_wrapping_an_existing_project/.gitignore ./examples/.gitignore ./.gitignore + mkdir -p _clean + cp -rp examples _clean/examples + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.F5BhCz + umask 022 + cd /builddir/build/BUILD/python-pypet-0.6.1-build + cd pypet-0.6.1 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/.pyproject-builddir + RPM_TOXENV=py313 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/pyproject-wheeldir --output /builddir/build/BUILD/python-pypet-0.6.1-build/python-pypet-0.6.1-7.fc42.x86_64-pyproject-buildrequires Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 74.1.3) running egg_info creating pypet.egg-info writing pypet.egg-info/PKG-INFO writing dependency_links to pypet.egg-info/dependency_links.txt writing requirements to pypet.egg-info/requires.txt writing top-level names to pypet.egg-info/top_level.txt writing manifest file 'pypet.egg-info/SOURCES.txt' reading manifest file 'pypet.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'pypet.egg-info/SOURCES.txt' running dist_info writing pypet.egg-info/PKG-INFO writing dependency_links to pypet.egg-info/dependency_links.txt writing requirements to pypet.egg-info/requires.txt writing top-level names to pypet.egg-info/top_level.txt reading manifest file 'pypet.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'pypet.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/pypet-0.6.1.dist-info' Handling tables from hook generated metadata: Requires-Dist (pypet) Requirement not satisfied: tables Handling pandas from hook generated metadata: Requires-Dist (pypet) Requirement not satisfied: pandas Handling numpy from hook generated metadata: Requires-Dist (pypet) Requirement satisfied: numpy (installed: numpy 1.26.4) Handling scipy from hook generated metadata: Requires-Dist (pypet) Requirement not satisfied: scipy + cat /builddir/build/BUILD/python-pypet-0.6.1-build/python-pypet-0.6.1-7.fc42.x86_64-pyproject-buildrequires + rm -rfv pypet-0.6.1.dist-info/ removed 'pypet-0.6.1.dist-info/LICENSE' removed 'pypet-0.6.1.dist-info/METADATA' removed 'pypet-0.6.1.dist-info/top_level.txt' removed directory 'pypet-0.6.1.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-pypet-0.6.1-7.fc42.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires Updating and loading repositories: Copr repository 100% | 109.6 KiB/s | 1.5 KiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 201.5 KiB/s | 3.8 KiB | 00m00s fedora 100% | 38.1 KiB/s | 9.9 KiB | 00m00s Copr repository 100% | 36.3 MiB/s | 1.3 MiB | 00m00s Repositories loaded. Package "hdf5-1.14.5-1.fc42.x86_64" is already installed. Package "latexmk-4.85-2.fc41.noarch" is already installed. Package "make-1:4.4.1-9.fc42.x86_64" is already installed. Package "pyproject-rpm-macros-1.16.2-1.fc42.noarch" is already installed. Package "python3-devel-3.13.0-1.fc42.x86_64" is already installed. Package "python3-sphinx-latex-1:8.1.3-1.fc42.noarch" is already installed. Package "python3-brian2-2.7.1-2.fc41.x86_64" is already installed. Package "python3-deap-1.4.1-7.fc42.x86_64" is already installed. Package "python3-matplotlib-3.9.1-2.fc41.x86_64" is already installed. Package "python3-numpy-1:1.26.4-8.fc41.x86_64" is already installed. Package "python3-packaging-24.2-2.fc42.noarch" is already installed. Package "python3-setuptools-74.1.3-4.fc42.noarch" is already installed. Package "python3-sphinx-1:8.1.3-1.fc42.noarch" is already installed. Package Arch Version Repository Size Installing: python3-pandas x86_64 2.2.1-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 42.0 MiB python3-pip noarch 24.3.1-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 11.3 MiB python3-scipy x86_64 1.14.1-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 67.1 MiB python3-tables x86_64 3.10.1-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 10.1 MiB Installing dependencies: blosc x86_64 1.21.6-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 130.3 KiB blosc2 x86_64 2.15.1-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 552.3 KiB lzo x86_64 2.10-13.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 166.9 KiB python3-Bottleneck x86_64 1.3.7-8.fc42 copr_base 630.5 KiB python3-blosc2 x86_64 2.7.1-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 MiB python3-cpuinfo noarch 9.0.0-10.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 307.8 KiB python3-msgpack x86_64 1.1.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 330.0 KiB python3-ndindex x86_64 1.7-13.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.9 MiB python3-numexpr x86_64 2.8.5-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 574.8 KiB python3-numpy-f2py x86_64 1:1.26.4-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.8 MiB python3-platformdirs noarch 4.2.2-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 168.6 KiB python3-pooch noarch 1.8.2-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 625.5 KiB python3-pytz noarch 2024.2-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 223.7 KiB python3-typing-extensions noarch 4.12.2-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 464.5 KiB snappy x86_64 1.2.1-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 71.1 KiB zlib-ng x86_64 2.2.2-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 153.6 KiB Transaction Summary: Installing: 20 packages Total size of inbound packages is 32 MiB. Need to download 12 MiB. After this operation, 142 MiB extra will be used (install 142 MiB, remove 0 B). [1/2] python3-pip-0:24.3.1-1.fc42.noarc 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [2/3] python3-scipy-0:1.14.1-1.fc42.x86 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 3/12] python3-numpy-f2py-1:1.26.4-8.f 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 4/13] python3-pooch-0:1.8.2-3.fc41.no 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 5/14] python3-platformdirs-0:4.2.2-2. 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 6/20] blosc-0:1.21.6-1.fc42.x86_64 100% | 1.9 MiB/s | 59.0 KiB | 00m00s [ 7/20] python3-tables-0:3.10.1-3.fc42. 100% | 45.1 MiB/s | 1.7 MiB | 00m00s [ 8/20] lzo-0:2.10-13.fc41.x86_64 100% | 8.1 MiB/s | 66.0 KiB | 00m00s [ 9/20] blosc2-0:2.15.1-1.fc42.x86_64 100% | 14.9 MiB/s | 213.2 KiB | 00m00s [10/20] python3-cpuinfo-0:9.0.0-10.fc42 100% | 9.6 MiB/s | 68.6 KiB | 00m00s [11/20] python3-blosc2-0:2.7.1-1.fc42.x 100% | 28.7 MiB/s | 352.9 KiB | 00m00s [12/20] python3-pandas-0:2.2.1-7.fc41.x 100% | 120.0 MiB/s | 7.9 MiB | 00m00s [13/20] python3-numexpr-0:2.8.5-7.fc41. 100% | 14.4 MiB/s | 161.7 KiB | 00m00s [14/20] python3-typing-extensions-0:4.1 100% | 7.6 MiB/s | 93.8 KiB | 00m00s [15/20] python3-pytz-0:2024.2-1.fc42.no 100% | 8.3 MiB/s | 59.8 KiB | 00m00s [16/20] python3-Bottleneck-0:1.3.7-8.fc 100% | 14.7 MiB/s | 165.0 KiB | 00m00s [17/20] python3-msgpack-0:1.1.0-1.fc42. 100% | 13.0 MiB/s | 106.2 KiB | 00m00s [18/20] snappy-0:1.2.1-3.fc42.x86_64 100% | 9.6 MiB/s | 39.5 KiB | 00m00s [19/20] zlib-ng-0:2.2.2-1.fc42.x86_64 100% | 13.7 MiB/s | 84.0 KiB | 00m00s [20/20] python3-ndindex-0:1.7-13.fc41.x 100% | 60.5 MiB/s | 743.4 KiB | 00m00s -------------------------------------------------------------------------------- [20/20] Total 100% | 110.9 MiB/s | 11.8 MiB | 00m00s Running transaction [ 1/22] Verify package files 100% | 215.0 B/s | 20.0 B | 00m00s [ 2/22] Prepare transaction 100% | 307.0 B/s | 20.0 B | 00m00s [ 3/22] Installing python3-numexpr-0:2. 100% | 189.8 MiB/s | 582.9 KiB | 00m00s [ 4/22] Installing python3-cpuinfo-0:9. 100% | 304.6 MiB/s | 311.9 KiB | 00m00s [ 5/22] Installing snappy-0:1.2.1-3.fc4 100% | 71.1 MiB/s | 72.8 KiB | 00m00s [ 6/22] Installing blosc-0:1.21.6-1.fc4 100% | 130.0 MiB/s | 133.1 KiB | 00m00s [ 7/22] Installing zlib-ng-0:2.2.2-1.fc 100% | 151.3 MiB/s | 154.9 KiB | 00m00s [ 8/22] Installing blosc2-0:2.15.1-1.fc 100% | 271.3 MiB/s | 555.6 KiB | 00m00s [ 9/22] Installing python3-ndindex-0:1. 100% | 326.0 MiB/s | 2.9 MiB | 00m00s [10/22] Installing python3-msgpack-0:1. 100% | 327.1 MiB/s | 334.9 KiB | 00m00s [11/22] Installing python3-blosc2-0:2.7 100% | 352.6 MiB/s | 1.1 MiB | 00m00s [12/22] Installing python3-pytz-0:2024. 100% | 223.6 MiB/s | 229.0 KiB | 00m00s [13/22] Installing python3-platformdirs 100% | 170.9 MiB/s | 175.0 KiB | 00m00s [14/22] Installing python3-pooch-0:1.8. 100% | 208.5 MiB/s | 640.5 KiB | 00m00s [15/22] Installing python3-numpy-f2py-1 100% | 202.6 MiB/s | 2.8 MiB | 00m00s [16/22] Installing python3-scipy-0:1.14 100% | 406.5 MiB/s | 67.5 MiB | 00m00s [17/22] Installing python3-Bottleneck-0 100% | 159.9 MiB/s | 654.9 KiB | 00m00s [18/22] Installing python3-typing-exten 100% | 455.9 MiB/s | 466.9 KiB | 00m00s [19/22] Installing lzo-0:2.10-13.fc41.x 100% | 164.5 MiB/s | 168.5 KiB | 00m00s [20/22] Installing python3-tables-0:3.1 100% | 406.3 MiB/s | 10.2 MiB | 00m00s [21/22] Installing python3-pandas-0:2.2 100% | 413.7 MiB/s | 42.2 MiB | 00m00s [22/22] Installing python3-pip-0:24.3.1 100% | 141.7 MiB/s | 11.6 MiB | 00m00s Warning: skipped PGP checks for 20 packages from repositories: copr_base, http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch Complete! Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1721347200 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.rB6mMD + umask 022 + cd /builddir/build/BUILD/python-pypet-0.6.1-build + cd pypet-0.6.1 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/.pyproject-builddir + RPM_TOXENV=py313 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/pyproject-wheeldir --output /builddir/build/BUILD/python-pypet-0.6.1-build/python-pypet-0.6.1-7.fc42.x86_64-pyproject-buildrequires Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 74.1.3) running egg_info writing pypet.egg-info/PKG-INFO writing dependency_links to pypet.egg-info/dependency_links.txt writing requirements to pypet.egg-info/requires.txt writing top-level names to pypet.egg-info/top_level.txt reading manifest file 'pypet.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'pypet.egg-info/SOURCES.txt' running dist_info writing pypet.egg-info/PKG-INFO writing dependency_links to pypet.egg-info/dependency_links.txt writing requirements to pypet.egg-info/requires.txt writing top-level names to pypet.egg-info/top_level.txt reading manifest file 'pypet.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'pypet.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/pypet-0.6.1.dist-info' Handling tables from hook generated metadata: Requires-Dist (pypet) Requirement satisfied: tables (installed: tables 3.10.1) Handling pandas from hook generated metadata: Requires-Dist (pypet) Requirement satisfied: pandas (installed: pandas 2.2.1) Handling numpy from hook generated metadata: Requires-Dist (pypet) Requirement satisfied: numpy (installed: numpy 1.26.4) Handling scipy from hook generated metadata: Requires-Dist (pypet) Requirement satisfied: scipy (installed: scipy 1.14.1) + cat /builddir/build/BUILD/python-pypet-0.6.1-build/python-pypet-0.6.1-7.fc42.x86_64-pyproject-buildrequires + rm -rfv pypet-0.6.1.dist-info/ removed 'pypet-0.6.1.dist-info/LICENSE' removed 'pypet-0.6.1.dist-info/METADATA' removed 'pypet-0.6.1.dist-info/top_level.txt' removed directory 'pypet-0.6.1.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-pypet-0.6.1-7.fc42.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires Updating and loading repositories: fedora 100% | 37.7 KiB/s | 9.9 KiB | 00m00s Copr repository 100% | 139.5 KiB/s | 1.5 KiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 225.2 KiB/s | 3.8 KiB | 00m00s Repositories loaded. Package "hdf5-1.14.5-1.fc42.x86_64" is already installed. Package "latexmk-4.85-2.fc41.noarch" is already installed. Package "make-1:4.4.1-9.fc42.x86_64" is already installed. Package "pyproject-rpm-macros-1.16.2-1.fc42.noarch" is already installed. Package "python3-devel-3.13.0-1.fc42.x86_64" is already installed. Package "python3-sphinx-latex-1:8.1.3-1.fc42.noarch" is already installed. Package "python3-brian2-2.7.1-2.fc41.x86_64" is already installed. Package "python3-deap-1.4.1-7.fc42.x86_64" is already installed. Package "python3-matplotlib-3.9.1-2.fc41.x86_64" is already installed. Package "python3-numpy-1:1.26.4-8.fc41.x86_64" is already installed. Package "python3-packaging-24.2-2.fc42.noarch" is already installed. Package "python3-pandas-2.2.1-7.fc41.x86_64" is already installed. Package "python3-pip-24.3.1-1.fc42.noarch" is already installed. Package "python3-scipy-1.14.1-1.fc42.x86_64" is already installed. Package "python3-setuptools-74.1.3-4.fc42.noarch" is already installed. Package "python3-sphinx-1:8.1.3-1.fc42.noarch" is already installed. Package "python3-tables-3.10.1-3.fc42.x86_64" is already installed. Nothing to do. Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1721347200 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.6IGS3V + umask 022 + cd /builddir/build/BUILD/python-pypet-0.6.1-build + cd pypet-0.6.1 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/.pyproject-builddir + RPM_TOXENV=py313 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/pyproject-wheeldir --output /builddir/build/BUILD/python-pypet-0.6.1-build/python-pypet-0.6.1-7.fc42.x86_64-pyproject-buildrequires Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 74.1.3) running egg_info writing pypet.egg-info/PKG-INFO writing dependency_links to pypet.egg-info/dependency_links.txt writing requirements to pypet.egg-info/requires.txt writing top-level names to pypet.egg-info/top_level.txt reading manifest file 'pypet.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'pypet.egg-info/SOURCES.txt' running dist_info writing pypet.egg-info/PKG-INFO writing dependency_links to pypet.egg-info/dependency_links.txt writing requirements to pypet.egg-info/requires.txt writing top-level names to pypet.egg-info/top_level.txt reading manifest file 'pypet.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'pypet.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/pypet-0.6.1.dist-info' Handling tables from hook generated metadata: Requires-Dist (pypet) Requirement satisfied: tables (installed: tables 3.10.1) Handling pandas from hook generated metadata: Requires-Dist (pypet) Requirement satisfied: pandas (installed: pandas 2.2.1) Handling numpy from hook generated metadata: Requires-Dist (pypet) Requirement satisfied: numpy (installed: numpy 1.26.4) Handling scipy from hook generated metadata: Requires-Dist (pypet) Requirement satisfied: scipy (installed: scipy 1.14.1) + cat /builddir/build/BUILD/python-pypet-0.6.1-build/python-pypet-0.6.1-7.fc42.x86_64-pyproject-buildrequires + rm -rfv pypet-0.6.1.dist-info/ removed 'pypet-0.6.1.dist-info/LICENSE' removed 'pypet-0.6.1.dist-info/METADATA' removed 'pypet-0.6.1.dist-info/top_level.txt' removed directory 'pypet-0.6.1.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.VklcCC + umask 022 + cd /builddir/build/BUILD/python-pypet-0.6.1-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd pypet-0.6.1 + mkdir -p /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/.pyproject-builddir + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_wheel.py /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/pyproject-wheeldir Processing /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1 Preparing metadata (pyproject.toml): started Running command Preparing metadata (pyproject.toml) running dist_info creating /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/.pyproject-builddir/pip-modern-metadata-v0aoiokb/pypet.egg-info writing /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/.pyproject-builddir/pip-modern-metadata-v0aoiokb/pypet.egg-info/PKG-INFO writing dependency_links to /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/.pyproject-builddir/pip-modern-metadata-v0aoiokb/pypet.egg-info/dependency_links.txt writing requirements to /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/.pyproject-builddir/pip-modern-metadata-v0aoiokb/pypet.egg-info/requires.txt writing top-level names to /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/.pyproject-builddir/pip-modern-metadata-v0aoiokb/pypet.egg-info/top_level.txt writing manifest file '/builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/.pyproject-builddir/pip-modern-metadata-v0aoiokb/pypet.egg-info/SOURCES.txt' reading manifest file '/builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/.pyproject-builddir/pip-modern-metadata-v0aoiokb/pypet.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file '/builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/.pyproject-builddir/pip-modern-metadata-v0aoiokb/pypet.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/.pyproject-builddir/pip-modern-metadata-v0aoiokb/pypet-0.6.1.dist-info' Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: pypet Building wheel for pypet (pyproject.toml): started Running command Building wheel for pypet (pyproject.toml) running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/pypet copying pypet/storageservice.py -> build/lib/pypet copying pypet/pypetlogging.py -> build/lib/pypet copying pypet/trajectory.py -> build/lib/pypet copying pypet/slots.py -> build/lib/pypet copying pypet/shareddata.py -> build/lib/pypet copying pypet/pypetexceptions.py -> build/lib/pypet copying pypet/pypetconstants.py -> build/lib/pypet copying pypet/parameter.py -> build/lib/pypet copying pypet/naturalnaming.py -> build/lib/pypet copying pypet/environment.py -> build/lib/pypet copying pypet/annotations.py -> build/lib/pypet copying pypet/_version.py -> build/lib/pypet copying pypet/__init__.py -> build/lib/pypet creating build/lib/pypet/brian2 copying pypet/brian2/parameter.py -> build/lib/pypet/brian2 copying pypet/brian2/network.py -> build/lib/pypet/brian2 copying pypet/brian2/__init__.py -> build/lib/pypet/brian2 creating build/lib/pypet/utils copying pypet/utils/trajectory_utils.py -> build/lib/pypet/utils copying pypet/utils/storagefactory.py -> build/lib/pypet/utils copying pypet/utils/siginthandling.py -> build/lib/pypet/utils copying pypet/utils/pypettest.py -> build/lib/pypet/utils copying pypet/utils/mpwrappers.py -> build/lib/pypet/utils copying pypet/utils/helpful_functions.py -> build/lib/pypet/utils copying pypet/utils/helpful_classes.py -> build/lib/pypet/utils copying pypet/utils/hdf5compression.py -> build/lib/pypet/utils copying pypet/utils/gitintegration.py -> build/lib/pypet/utils copying pypet/utils/explore.py -> build/lib/pypet/utils copying pypet/utils/dynamicimports.py -> build/lib/pypet/utils copying pypet/utils/decorators.py -> build/lib/pypet/utils copying pypet/utils/configparsing.py -> build/lib/pypet/utils copying pypet/utils/comparisons.py -> build/lib/pypet/utils copying pypet/utils/__init__.py -> build/lib/pypet/utils creating build/lib/pypet/tests copying pypet/tests/test_all_nose.py -> build/lib/pypet/tests copying pypet/tests/scoop_run.py -> build/lib/pypet/tests copying pypet/tests/coverage_run.py -> build/lib/pypet/tests copying pypet/tests/all_tests.py -> build/lib/pypet/tests copying pypet/tests/all_single_core_tests.py -> build/lib/pypet/tests copying pypet/tests/all_multi_core_tests.py -> build/lib/pypet/tests copying pypet/tests/all_examples.py -> build/lib/pypet/tests copying pypet/tests/_atworema.py -> build/lib/pypet/tests copying pypet/tests/__init__.py -> build/lib/pypet/tests creating build/lib/pypet/tests/unittests copying pypet/tests/unittests/storage_test.py -> build/lib/pypet/tests/unittests copying pypet/tests/unittests/utils_test.py -> build/lib/pypet/tests/unittests copying pypet/tests/unittests/trajectory_test.py -> build/lib/pypet/tests/unittests copying pypet/tests/unittests/shared_data_test.py -> build/lib/pypet/tests/unittests copying pypet/tests/unittests/pypetlogging_test.py -> build/lib/pypet/tests/unittests copying pypet/tests/unittests/parameter_test.py -> build/lib/pypet/tests/unittests copying pypet/tests/unittests/mpwrappers_test.py -> build/lib/pypet/tests/unittests copying pypet/tests/unittests/module_test.py -> build/lib/pypet/tests/unittests copying pypet/tests/unittests/link_test.py -> build/lib/pypet/tests/unittests copying pypet/tests/unittests/configparse_test.py -> build/lib/pypet/tests/unittests copying pypet/tests/unittests/annotations_test.py -> build/lib/pypet/tests/unittests copying pypet/tests/unittests/__init__.py -> build/lib/pypet/tests/unittests creating build/lib/pypet/tests/integration copying pypet/tests/integration/shared_data_test.py -> build/lib/pypet/tests/integration copying pypet/tests/integration/removal_and_continue_test.py -> build/lib/pypet/tests/integration copying pypet/tests/integration/pipeline_test.py -> build/lib/pypet/tests/integration copying pypet/tests/integration/merge_test.py -> build/lib/pypet/tests/integration copying pypet/tests/integration/logging_test.py -> build/lib/pypet/tests/integration copying pypet/tests/integration/logging_multiproc_test.py -> build/lib/pypet/tests/integration copying pypet/tests/integration/link_test.py -> build/lib/pypet/tests/integration copying pypet/tests/integration/link_multiproc_test.py -> build/lib/pypet/tests/integration copying pypet/tests/integration/git_check.py -> build/lib/pypet/tests/integration copying pypet/tests/integration/environment_test.py -> build/lib/pypet/tests/integration copying pypet/tests/integration/environment_scoop_test.py -> build/lib/pypet/tests/integration copying pypet/tests/integration/environment_multiproc_test.py -> build/lib/pypet/tests/integration copying pypet/tests/integration/envSCOOPdebug.py -> build/lib/pypet/tests/integration copying pypet/tests/integration/__init__.py -> build/lib/pypet/tests/integration creating build/lib/pypet/tests/profiling copying pypet/tests/profiling/profiling.py -> build/lib/pypet/tests/profiling copying pypet/tests/profiling/creating_run_table.py -> build/lib/pypet/tests/profiling copying pypet/tests/profiling/__init__.py -> build/lib/pypet/tests/profiling creating build/lib/pypet/tests/testutils copying pypet/tests/testutils/ioutils.py -> build/lib/pypet/tests/testutils copying pypet/tests/testutils/data.py -> build/lib/pypet/tests/testutils copying pypet/tests/testutils/__init__.py -> build/lib/pypet/tests/testutils creating build/lib/pypet/tests/unittests/brian2tests copying pypet/tests/unittests/brian2tests/brian2_parameter_test.py -> build/lib/pypet/tests/unittests/brian2tests copying pypet/tests/unittests/brian2tests/run_a_brian2_network.py -> build/lib/pypet/tests/unittests/brian2tests copying pypet/tests/unittests/brian2tests/module_test.py -> build/lib/pypet/tests/unittests/brian2tests copying pypet/tests/unittests/brian2tests/brian2_monitor_test.py -> build/lib/pypet/tests/unittests/brian2tests copying pypet/tests/unittests/brian2tests/__init__.py -> build/lib/pypet/tests/unittests/brian2tests creating build/lib/pypet/tests/integration/brian2tests copying pypet/tests/integration/brian2tests/network_test.py -> build/lib/pypet/tests/integration/brian2tests copying pypet/tests/integration/brian2tests/hdf5_brian2_test.py -> build/lib/pypet/tests/integration/brian2tests copying pypet/tests/integration/brian2tests/another_network_test.py -> build/lib/pypet/tests/integration/brian2tests copying pypet/tests/integration/brian2tests/__init__.py -> build/lib/pypet/tests/integration/brian2tests creating build/lib/pypet/logging copying pypet/logging/test.ini -> build/lib/pypet/logging copying pypet/logging/env_config_test.ini -> build/lib/pypet/logging copying pypet/logging/default.ini -> build/lib/pypet/logging copying pypet/logging/debug.ini -> build/lib/pypet/logging creating build/lib/pypet/tests/testdata copying pypet/tests/testdata/pypet_v0_1b_6.hdf5 -> build/lib/pypet/tests/testdata installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/pypet creating build/bdist.linux-x86_64/wheel/pypet/logging copying build/lib/pypet/logging/debug.ini -> build/bdist.linux-x86_64/wheel/./pypet/logging copying build/lib/pypet/logging/default.ini -> build/bdist.linux-x86_64/wheel/./pypet/logging copying build/lib/pypet/logging/env_config_test.ini -> build/bdist.linux-x86_64/wheel/./pypet/logging copying build/lib/pypet/logging/test.ini -> build/bdist.linux-x86_64/wheel/./pypet/logging creating build/bdist.linux-x86_64/wheel/pypet/tests creating build/bdist.linux-x86_64/wheel/pypet/tests/testdata copying build/lib/pypet/tests/testdata/pypet_v0_1b_6.hdf5 -> build/bdist.linux-x86_64/wheel/./pypet/tests/testdata creating build/bdist.linux-x86_64/wheel/pypet/tests/testutils copying build/lib/pypet/tests/testutils/__init__.py -> build/bdist.linux-x86_64/wheel/./pypet/tests/testutils copying build/lib/pypet/tests/testutils/data.py -> build/bdist.linux-x86_64/wheel/./pypet/tests/testutils copying build/lib/pypet/tests/testutils/ioutils.py -> build/bdist.linux-x86_64/wheel/./pypet/tests/testutils creating build/bdist.linux-x86_64/wheel/pypet/tests/profiling copying build/lib/pypet/tests/profiling/__init__.py -> build/bdist.linux-x86_64/wheel/./pypet/tests/profiling copying build/lib/pypet/tests/profiling/creating_run_table.py -> build/bdist.linux-x86_64/wheel/./pypet/tests/profiling copying build/lib/pypet/tests/profiling/profiling.py -> build/bdist.linux-x86_64/wheel/./pypet/tests/profiling creating build/bdist.linux-x86_64/wheel/pypet/tests/integration creating build/bdist.linux-x86_64/wheel/pypet/tests/integration/brian2tests copying build/lib/pypet/tests/integration/brian2tests/__init__.py -> build/bdist.linux-x86_64/wheel/./pypet/tests/integration/brian2tests copying build/lib/pypet/tests/integration/brian2tests/another_network_test.py -> build/bdist.linux-x86_64/wheel/./pypet/tests/integration/brian2tests copying build/lib/pypet/tests/integration/brian2tests/hdf5_brian2_test.py -> build/bdist.linux-x86_64/wheel/./pypet/tests/integration/brian2tests copying build/lib/pypet/tests/integration/brian2tests/network_test.py -> build/bdist.linux-x86_64/wheel/./pypet/tests/integration/brian2tests copying build/lib/pypet/tests/integration/__init__.py -> build/bdist.linux-x86_64/wheel/./pypet/tests/integration copying build/lib/pypet/tests/integration/envSCOOPdebug.py -> build/bdist.linux-x86_64/wheel/./pypet/tests/integration copying build/lib/pypet/tests/integration/environment_multiproc_test.py -> build/bdist.linux-x86_64/wheel/./pypet/tests/integration copying build/lib/pypet/tests/integration/environment_scoop_test.py -> build/bdist.linux-x86_64/wheel/./pypet/tests/integration copying build/lib/pypet/tests/integration/environment_test.py -> build/bdist.linux-x86_64/wheel/./pypet/tests/integration copying build/lib/pypet/tests/integration/git_check.py -> build/bdist.linux-x86_64/wheel/./pypet/tests/integration copying build/lib/pypet/tests/integration/link_multiproc_test.py -> build/bdist.linux-x86_64/wheel/./pypet/tests/integration copying build/lib/pypet/tests/integration/link_test.py -> build/bdist.linux-x86_64/wheel/./pypet/tests/integration copying build/lib/pypet/tests/integration/logging_multiproc_test.py -> build/bdist.linux-x86_64/wheel/./pypet/tests/integration copying build/lib/pypet/tests/integration/logging_test.py -> build/bdist.linux-x86_64/wheel/./pypet/tests/integration copying build/lib/pypet/tests/integration/merge_test.py -> build/bdist.linux-x86_64/wheel/./pypet/tests/integration copying build/lib/pypet/tests/integration/pipeline_test.py -> build/bdist.linux-x86_64/wheel/./pypet/tests/integration copying build/lib/pypet/tests/integration/removal_and_continue_test.py -> build/bdist.linux-x86_64/wheel/./pypet/tests/integration copying build/lib/pypet/tests/integration/shared_data_test.py -> build/bdist.linux-x86_64/wheel/./pypet/tests/integration creating build/bdist.linux-x86_64/wheel/pypet/tests/unittests creating build/bdist.linux-x86_64/wheel/pypet/tests/unittests/brian2tests copying build/lib/pypet/tests/unittests/brian2tests/__init__.py -> build/bdist.linux-x86_64/wheel/./pypet/tests/unittests/brian2tests copying build/lib/pypet/tests/unittests/brian2tests/brian2_monitor_test.py -> build/bdist.linux-x86_64/wheel/./pypet/tests/unittests/brian2tests copying build/lib/pypet/tests/unittests/brian2tests/module_test.py -> build/bdist.linux-x86_64/wheel/./pypet/tests/unittests/brian2tests copying build/lib/pypet/tests/unittests/brian2tests/run_a_brian2_network.py -> build/bdist.linux-x86_64/wheel/./pypet/tests/unittests/brian2tests copying build/lib/pypet/tests/unittests/brian2tests/brian2_parameter_test.py -> build/bdist.linux-x86_64/wheel/./pypet/tests/unittests/brian2tests copying build/lib/pypet/tests/unittests/__init__.py -> build/bdist.linux-x86_64/wheel/./pypet/tests/unittests copying build/lib/pypet/tests/unittests/annotations_test.py -> build/bdist.linux-x86_64/wheel/./pypet/tests/unittests copying build/lib/pypet/tests/unittests/configparse_test.py -> build/bdist.linux-x86_64/wheel/./pypet/tests/unittests copying build/lib/pypet/tests/unittests/link_test.py -> build/bdist.linux-x86_64/wheel/./pypet/tests/unittests copying build/lib/pypet/tests/unittests/module_test.py -> build/bdist.linux-x86_64/wheel/./pypet/tests/unittests copying build/lib/pypet/tests/unittests/mpwrappers_test.py -> build/bdist.linux-x86_64/wheel/./pypet/tests/unittests copying build/lib/pypet/tests/unittests/parameter_test.py -> build/bdist.linux-x86_64/wheel/./pypet/tests/unittests copying build/lib/pypet/tests/unittests/pypetlogging_test.py -> build/bdist.linux-x86_64/wheel/./pypet/tests/unittests copying build/lib/pypet/tests/unittests/shared_data_test.py -> build/bdist.linux-x86_64/wheel/./pypet/tests/unittests copying build/lib/pypet/tests/unittests/trajectory_test.py -> build/bdist.linux-x86_64/wheel/./pypet/tests/unittests copying build/lib/pypet/tests/unittests/utils_test.py -> build/bdist.linux-x86_64/wheel/./pypet/tests/unittests copying build/lib/pypet/tests/unittests/storage_test.py -> build/bdist.linux-x86_64/wheel/./pypet/tests/unittests copying build/lib/pypet/tests/__init__.py -> build/bdist.linux-x86_64/wheel/./pypet/tests copying build/lib/pypet/tests/_atworema.py -> build/bdist.linux-x86_64/wheel/./pypet/tests copying build/lib/pypet/tests/all_examples.py -> build/bdist.linux-x86_64/wheel/./pypet/tests copying build/lib/pypet/tests/all_multi_core_tests.py -> build/bdist.linux-x86_64/wheel/./pypet/tests copying build/lib/pypet/tests/all_single_core_tests.py -> build/bdist.linux-x86_64/wheel/./pypet/tests copying build/lib/pypet/tests/all_tests.py -> build/bdist.linux-x86_64/wheel/./pypet/tests copying build/lib/pypet/tests/coverage_run.py -> build/bdist.linux-x86_64/wheel/./pypet/tests copying build/lib/pypet/tests/scoop_run.py -> build/bdist.linux-x86_64/wheel/./pypet/tests copying build/lib/pypet/tests/test_all_nose.py -> build/bdist.linux-x86_64/wheel/./pypet/tests creating build/bdist.linux-x86_64/wheel/pypet/utils copying build/lib/pypet/utils/__init__.py -> build/bdist.linux-x86_64/wheel/./pypet/utils copying build/lib/pypet/utils/comparisons.py -> build/bdist.linux-x86_64/wheel/./pypet/utils copying build/lib/pypet/utils/configparsing.py -> build/bdist.linux-x86_64/wheel/./pypet/utils copying build/lib/pypet/utils/decorators.py -> build/bdist.linux-x86_64/wheel/./pypet/utils copying build/lib/pypet/utils/dynamicimports.py -> build/bdist.linux-x86_64/wheel/./pypet/utils copying build/lib/pypet/utils/explore.py -> build/bdist.linux-x86_64/wheel/./pypet/utils copying build/lib/pypet/utils/gitintegration.py -> build/bdist.linux-x86_64/wheel/./pypet/utils copying build/lib/pypet/utils/hdf5compression.py -> build/bdist.linux-x86_64/wheel/./pypet/utils copying build/lib/pypet/utils/helpful_classes.py -> build/bdist.linux-x86_64/wheel/./pypet/utils copying build/lib/pypet/utils/helpful_functions.py -> build/bdist.linux-x86_64/wheel/./pypet/utils copying build/lib/pypet/utils/mpwrappers.py -> build/bdist.linux-x86_64/wheel/./pypet/utils copying build/lib/pypet/utils/pypettest.py -> build/bdist.linux-x86_64/wheel/./pypet/utils copying build/lib/pypet/utils/siginthandling.py -> build/bdist.linux-x86_64/wheel/./pypet/utils copying build/lib/pypet/utils/storagefactory.py -> build/bdist.linux-x86_64/wheel/./pypet/utils copying build/lib/pypet/utils/trajectory_utils.py -> build/bdist.linux-x86_64/wheel/./pypet/utils creating build/bdist.linux-x86_64/wheel/pypet/brian2 copying build/lib/pypet/brian2/__init__.py -> build/bdist.linux-x86_64/wheel/./pypet/brian2 copying build/lib/pypet/brian2/network.py -> build/bdist.linux-x86_64/wheel/./pypet/brian2 copying build/lib/pypet/brian2/parameter.py -> build/bdist.linux-x86_64/wheel/./pypet/brian2 copying build/lib/pypet/__init__.py -> build/bdist.linux-x86_64/wheel/./pypet copying build/lib/pypet/_version.py -> build/bdist.linux-x86_64/wheel/./pypet copying build/lib/pypet/annotations.py -> build/bdist.linux-x86_64/wheel/./pypet copying build/lib/pypet/environment.py -> build/bdist.linux-x86_64/wheel/./pypet copying build/lib/pypet/naturalnaming.py -> build/bdist.linux-x86_64/wheel/./pypet copying build/lib/pypet/parameter.py -> build/bdist.linux-x86_64/wheel/./pypet copying build/lib/pypet/pypetconstants.py -> build/bdist.linux-x86_64/wheel/./pypet copying build/lib/pypet/pypetexceptions.py -> build/bdist.linux-x86_64/wheel/./pypet copying build/lib/pypet/shareddata.py -> build/bdist.linux-x86_64/wheel/./pypet copying build/lib/pypet/slots.py -> build/bdist.linux-x86_64/wheel/./pypet copying build/lib/pypet/trajectory.py -> build/bdist.linux-x86_64/wheel/./pypet copying build/lib/pypet/pypetlogging.py -> build/bdist.linux-x86_64/wheel/./pypet copying build/lib/pypet/storageservice.py -> build/bdist.linux-x86_64/wheel/./pypet running install_egg_info running egg_info writing pypet.egg-info/PKG-INFO writing dependency_links to pypet.egg-info/dependency_links.txt writing requirements to pypet.egg-info/requires.txt writing top-level names to pypet.egg-info/top_level.txt reading manifest file 'pypet.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'pypet.egg-info/SOURCES.txt' Copying pypet.egg-info to build/bdist.linux-x86_64/wheel/./pypet-0.6.1-py3.13.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/pypet-0.6.1.dist-info/WHEEL creating '/builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/.pyproject-builddir/pip-wheel-k1adwf0o/.tmp-5hmq55up/pypet-0.6.1-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'pypet/__init__.py' adding 'pypet/_version.py' adding 'pypet/annotations.py' adding 'pypet/environment.py' adding 'pypet/naturalnaming.py' adding 'pypet/parameter.py' adding 'pypet/pypetconstants.py' adding 'pypet/pypetexceptions.py' adding 'pypet/pypetlogging.py' adding 'pypet/shareddata.py' adding 'pypet/slots.py' adding 'pypet/storageservice.py' adding 'pypet/trajectory.py' adding 'pypet/brian2/__init__.py' adding 'pypet/brian2/network.py' adding 'pypet/brian2/parameter.py' adding 'pypet/logging/debug.ini' adding 'pypet/logging/default.ini' adding 'pypet/logging/env_config_test.ini' adding 'pypet/logging/test.ini' adding 'pypet/tests/__init__.py' adding 'pypet/tests/_atworema.py' adding 'pypet/tests/all_examples.py' adding 'pypet/tests/all_multi_core_tests.py' adding 'pypet/tests/all_single_core_tests.py' adding 'pypet/tests/all_tests.py' adding 'pypet/tests/coverage_run.py' adding 'pypet/tests/scoop_run.py' adding 'pypet/tests/test_all_nose.py' adding 'pypet/tests/integration/__init__.py' adding 'pypet/tests/integration/envSCOOPdebug.py' adding 'pypet/tests/integration/environment_multiproc_test.py' adding 'pypet/tests/integration/environment_scoop_test.py' adding 'pypet/tests/integration/environment_test.py' adding 'pypet/tests/integration/git_check.py' adding 'pypet/tests/integration/link_multiproc_test.py' adding 'pypet/tests/integration/link_test.py' adding 'pypet/tests/integration/logging_multiproc_test.py' adding 'pypet/tests/integration/logging_test.py' adding 'pypet/tests/integration/merge_test.py' adding 'pypet/tests/integration/pipeline_test.py' adding 'pypet/tests/integration/removal_and_continue_test.py' adding 'pypet/tests/integration/shared_data_test.py' adding 'pypet/tests/integration/brian2tests/__init__.py' adding 'pypet/tests/integration/brian2tests/another_network_test.py' adding 'pypet/tests/integration/brian2tests/hdf5_brian2_test.py' adding 'pypet/tests/integration/brian2tests/network_test.py' adding 'pypet/tests/profiling/__init__.py' adding 'pypet/tests/profiling/creating_run_table.py' adding 'pypet/tests/profiling/profiling.py' adding 'pypet/tests/testdata/pypet_v0_1b_6.hdf5' adding 'pypet/tests/testutils/__init__.py' adding 'pypet/tests/testutils/data.py' adding 'pypet/tests/testutils/ioutils.py' adding 'pypet/tests/unittests/__init__.py' adding 'pypet/tests/unittests/annotations_test.py' adding 'pypet/tests/unittests/configparse_test.py' adding 'pypet/tests/unittests/link_test.py' adding 'pypet/tests/unittests/module_test.py' adding 'pypet/tests/unittests/mpwrappers_test.py' adding 'pypet/tests/unittests/parameter_test.py' adding 'pypet/tests/unittests/pypetlogging_test.py' adding 'pypet/tests/unittests/shared_data_test.py' adding 'pypet/tests/unittests/storage_test.py' adding 'pypet/tests/unittests/trajectory_test.py' adding 'pypet/tests/unittests/utils_test.py' adding 'pypet/tests/unittests/brian2tests/__init__.py' adding 'pypet/tests/unittests/brian2tests/brian2_monitor_test.py' adding 'pypet/tests/unittests/brian2tests/brian2_parameter_test.py' adding 'pypet/tests/unittests/brian2tests/module_test.py' adding 'pypet/tests/unittests/brian2tests/run_a_brian2_network.py' adding 'pypet/utils/__init__.py' adding 'pypet/utils/comparisons.py' adding 'pypet/utils/configparsing.py' adding 'pypet/utils/decorators.py' adding 'pypet/utils/dynamicimports.py' adding 'pypet/utils/explore.py' adding 'pypet/utils/gitintegration.py' adding 'pypet/utils/hdf5compression.py' adding 'pypet/utils/helpful_classes.py' adding 'pypet/utils/helpful_functions.py' adding 'pypet/utils/mpwrappers.py' adding 'pypet/utils/pypettest.py' adding 'pypet/utils/siginthandling.py' adding 'pypet/utils/storagefactory.py' adding 'pypet/utils/trajectory_utils.py' adding 'pypet-0.6.1.dist-info/LICENSE' adding 'pypet-0.6.1.dist-info/METADATA' adding 'pypet-0.6.1.dist-info/WHEEL' adding 'pypet-0.6.1.dist-info/top_level.txt' adding 'pypet-0.6.1.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Building wheel for pypet (pyproject.toml): finished with status 'done' Created wheel for pypet: filename=pypet-0.6.1-py3-none-any.whl size=344994 sha256=7d27a71c309ac5bab6d11d74fcb4cdff3ac9cc2154a98b323aae67a510cfe9ca Stored in directory: /builddir/.cache/pip/wheels/86/b8/dd/a40118f5ac504c34af376e0fe5f13bf297c2bead9c1ed6d6bc Successfully built pypet + PYTHONPATH=/builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1 + /usr/bin/make -O -j4 V=1 VERBOSE=1 -C doc latex SPHINXOPTS=-j4 make: Entering directory '/builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/doc' sphinx-build -b latex -d build/doctrees -j4 source build/latex Running Sphinx v8.1.3 loading translations [en]... done making output directory... done Converting `source_suffix = '.rst'` to `source_suffix = {'.rst': 'restructuredtext'}`. [autosummary] generating autosummary for: cookbook/brian.rst, cookbook/environment.rst, cookbook/parameter.rst, cookbook/trajectory.rst, examplesdoc/example_01.rst, examplesdoc/example_02.rst, examplesdoc/example_03.rst, examplesdoc/example_04.rst, examplesdoc/example_05.rst, examplesdoc/example_06.rst, ..., pypetdoc/brian2networkdoc.rst, pypetdoc/brian2parameterdoc.rst, pypetdoc/environmentdoc.rst, pypetdoc/parameterdoc.rst, pypetdoc/pypetconstantsdoc.rst, pypetdoc/pypetexceptionsdoc.rst, pypetdoc/slotsloggingdoc.rst, pypetdoc/storageservicedoc.rst, pypetdoc/trajectorydoc.rst, pypetdoc/utilsdoc.rst building [mo]: targets for 0 po files that are out of date writing output... building [latex]: all documents updating environment: [new config] 51 added, 0 changed, 0 removed reading sources... [ 20%] cookbook/brian .. examplesdoc/example_08 reading sources... [ 40%] examplesdoc/example_09 .. examplesdoc/example_20 reading sources... [ 60%] examplesdoc/example_21 .. manual/examples_toc reading sources... [ 80%] manual/faqs .. pypetdoc/environmentdoc reading sources... [100%] pypetdoc/parameterdoc .. pypetdoc/utilsdoc looking for now-outdated files... none found pickling environment... done checking consistency... /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/doc/source/manual/code_toc.rst: document is referenced in multiple toctrees: ['latex', 'index'], selecting: latex <- manual/code_toc /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/doc/source/manual/manual_toc.rst: document is referenced in multiple toctrees: ['latex', 'index'], selecting: latex <- manual/manual_toc /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/doc/source/manual/misc_toc.rst: document is referenced in multiple toctrees: ['latex', 'index'], selecting: latex <- manual/misc_toc done preparing documents... done copying assets... Writing evaluated template result to /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/doc/build/latex/make.bat Writing evaluated template result to /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/doc/build/latex/latexmkrc Writing evaluated template result to /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/doc/build/latex/latexmkjarc Writing evaluated template result to /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/doc/build/latex/Makefile copying assets: done processing pypet.tex... latex manual/manual_toc manual/introduction manual/tutorial manual/cookbook_toc cookbook/trajectory cookbook/parameter cookbook/environment cookbook/brian manual/examples_toc examplesdoc/example_01 examplesdoc/example_02 examplesdoc/example_14 examplesdoc/example_15 examplesdoc/example_04 examplesdoc/example_21 examplesdoc/example_09 examplesdoc/example_13 examplesdoc/example_17 examplesdoc/example_18 examplesdoc/example_03 examplesdoc/example_05 examplesdoc/example_06 examplesdoc/example_08 examplesdoc/example_10 examplesdoc/example_12 examplesdoc/example_16 examplesdoc/example_19 examplesdoc/example_20 examplesdoc/example_22 examplesdoc/example_23 examplesdoc/example_24 manual/optimization_tips manual/faqs manual/misc_toc manual/misc manual/changelog manual/code_toc pypetdoc/environmentdoc pypetdoc/trajectorydoc pypetdoc/parameterdoc pypetdoc/annotationsdoc pypetdoc/utilsdoc pypetdoc/pypetexceptionsdoc pypetdoc/pypetconstantsdoc pypetdoc/slotsloggingdoc pypetdoc/storageservicedoc pypetdoc/brian2parameterdoc pypetdoc/brian2networkdoc latex_contact_license resolving references... processing pypet.tex: done writing... done copying images... [ 12%] figures/layout.png copying images... [ 25%] figures/example_01.png copying images... [ 38%] figures/experiment_phases.png copying images... [ 50%] figures/tutorial.png copying images... [ 62%] figures/network_managing.png copying images... [ 75%] figures/main_script.png copying images... [ 88%] figures/network_run.png copying images... [100%] bbd_2013_poster/meyer_bbd_2013_small.png Writing evaluated template result to /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/doc/build/latex/sphinxmessages.sty build succeeded, 2 warnings. The LaTeX files are in build/latex. Run 'make' in that directory to run these through (pdf)latex (use `make latexpdf' here to do that automatically). Build finished; the LaTeX files are in build/latex. Run `make' in that directory to run these through (pdf)latex (use `make latexpdf' here to do that automatically). make: Leaving directory '/builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/doc' WARNING: html_static_path entry '_static' does not exist /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/doc/source/latex.rst: WARNING: document isn't included in any toctree + /usr/bin/make -O -j4 V=1 VERBOSE=1 -C doc/build/latex LATEXMKOPTS=-quiet make: Entering directory '/builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/doc/build/latex' latexmk -pdf -dvi- -ps- -quiet 'pypet.tex' Rc files read: /etc/latexmkrc latexmkrc Latexmk: Run number 1 of rule 'pdflatex' This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode Latexmk: Getting log file 'pypet.log' Have index file 'pypet.idx', pypet.ind pypet Latexmk: Run number 1 of rule 'makeindex pypet.idx' Latexmk: Run number 2 of rule 'pdflatex' This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode Latexmk: Getting log file 'pypet.log' Have index file 'pypet.idx', pypet.ind pypet Latexmk: Run number 3 of rule 'pdflatex' This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode Latexmk: Getting log file 'pypet.log' Have index file 'pypet.idx', pypet.ind pypet make: Leaving directory '/builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/doc/build/latex' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.sxK86Y + umask 022 + cd /builddir/build/BUILD/python-pypet-0.6.1-build + '[' /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT ++ dirname /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT + mkdir -p /builddir/build/BUILD/python-pypet-0.6.1-build + mkdir /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd pypet-0.6.1 ++ ls /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/pyproject-wheeldir/pypet-0.6.1-py3-none-any.whl ++ xargs basename --multiple ++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/' + specifier=pypet==0.6.1 + '[' -z pypet==0.6.1 ']' + TMPDIR=/builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/.pyproject-builddir + /usr/bin/python3 -m pip install --root /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT --prefix /usr --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/pyproject-wheeldir pypet==0.6.1 Using pip 24.3.1 from /usr/lib/python3.13/site-packages/pip (python 3.13) Looking in links: /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/pyproject-wheeldir Processing ./pyproject-wheeldir/pypet-0.6.1-py3-none-any.whl Installing collected packages: pypet Successfully installed pypet-0.6.1 + '[' -d /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/bin ']' + rm -f /builddir/build/BUILD/python-pypet-0.6.1-build/python-pypet-0.6.1-7.fc42.x86_64-pyproject-ghost-distinfo + site_dirs=() + '[' -d /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages ']' + site_dirs+=("/usr/lib/python3.13/site-packages") + '[' /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib64/python3.13/site-packages '!=' /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages ']' + '[' -d /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib64/python3.13/site-packages ']' + for site_dir in ${site_dirs[@]} + for distinfo in /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT$site_dir/*.dist-info + echo '%ghost /usr/lib/python3.13/site-packages/pypet-0.6.1.dist-info' + sed -i s/pip/rpm/ /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet-0.6.1.dist-info/INSTALLER + PYTHONPATH=/usr/lib/rpm/redhat + /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT --record /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet-0.6.1.dist-info/RECORD --output /builddir/build/BUILD/python-pypet-0.6.1-build/python-pypet-0.6.1-7.fc42.x86_64-pyproject-record + rm -fv /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet-0.6.1.dist-info/RECORD removed '/builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet-0.6.1.dist-info/RECORD' + rm -fv /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet-0.6.1.dist-info/REQUESTED removed '/builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet-0.6.1.dist-info/REQUESTED' ++ wc -l /builddir/build/BUILD/python-pypet-0.6.1-build/python-pypet-0.6.1-7.fc42.x86_64-pyproject-ghost-distinfo ++ cut -f1 '-d ' + lines=1 + '[' 1 -ne 1 ']' + RPM_FILES_ESCAPE=4.19 + /usr/bin/python3 /usr/lib/rpm/redhat/pyproject_save_files.py --output-files /builddir/build/BUILD/python-pypet-0.6.1-build/python-pypet-0.6.1-7.fc42.x86_64-pyproject-files --output-modules /builddir/build/BUILD/python-pypet-0.6.1-build/python-pypet-0.6.1-7.fc42.x86_64-pyproject-modules --buildroot /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT --sitelib /usr/lib/python3.13/site-packages --sitearch /usr/lib64/python3.13/site-packages --python-version 3.13 --pyproject-record /builddir/build/BUILD/python-pypet-0.6.1-build/python-pypet-0.6.1-7.fc42.x86_64-pyproject-record --prefix /usr -l pypet + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip /usr/bin/strip + /usr/lib/rpm/brp-strip-comment-note /usr/bin/strip /usr/bin/objdump + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j4 Bytecompiling .py files below /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13 using python3.13 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-determinism --brp -j4 /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/__pycache__/environment.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/__pycache__/pypetlogging.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/__pycache__/pypetexceptions.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/__pycache__/pypetconstants.cpython-313.opt-1.pyc: 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/builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/tests/__pycache__/all_single_core_tests.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/tests/__pycache__/all_multi_core_tests.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/__pycache__/parameter.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/tests/__pycache__/all_tests.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/tests/__pycache__/all_examples.cpython-313.opt-1.pyc: replacing with normalized version 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/builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/tests/unittests/__pycache__/trajectory_test.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/tests/unittests/__pycache__/module_test.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/tests/unittests/__pycache__/__init__.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/tests/unittests/__pycache__/configparse_test.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/tests/unittests/brian2tests/__pycache__/run_a_brian2_network.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/tests/unittests/brian2tests/__pycache__/__init__.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/tests/unittests/brian2tests/__pycache__/module_test.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/tests/unittests/__pycache__/link_test.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/tests/unittests/brian2tests/__pycache__/brian2_parameter_test.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/tests/unittests/brian2tests/__pycache__/brian2_parameter_test.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/tests/unittests/brian2tests/__pycache__/brian2_monitor_test.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/tests/testutils/__pycache__/ioutils.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/tests/unittests/__pycache__/parameter_test.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/tests/testutils/__pycache__/__init__.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/tests/profiling/__pycache__/creating_run_table.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/tests/profiling/__pycache__/__init__.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/tests/profiling/__pycache__/profiling.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/tests/unittests/__pycache__/parameter_test.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/tests/testutils/__pycache__/data.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/tests/integration/__pycache__/git_check.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/tests/integration/__pycache__/git_check.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/tests/integration/__pycache__/shared_data_test.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/tests/integration/__pycache__/pipeline_test.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/tests/integration/__pycache__/removal_and_continue_test.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/tests/integration/__pycache__/pipeline_test.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/tests/integration/__pycache__/envSCOOPdebug.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/tests/integration/__pycache__/logging_multiproc_test.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/tests/integration/__pycache__/logging_test.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/tests/integration/__pycache__/merge_test.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/tests/integration/__pycache__/link_test.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/tests/integration/__pycache__/environment_scoop_test.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/tests/integration/__pycache__/__init__.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/tests/integration/__pycache__/link_multiproc_test.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/tests/integration/brian2tests/__pycache__/hdf5_brian2_test.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/tests/integration/brian2tests/__pycache__/another_network_test.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/tests/integration/brian2tests/__pycache__/__init__.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/tests/integration/__pycache__/environment_multiproc_test.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/tests/integration/__pycache__/environment_test.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/tests/integration/brian2tests/__pycache__/network_test.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/brian2/__pycache__/__init__.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/brian2/__pycache__/parameter.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/brian2/__pycache__/network.cpython-313.opt-1.pyc: rewriting with normalized contents Scanned 28 directories and 253 files, processed 86 inodes, 86 modified (10 replaced + 76 rewritten), 0 unsupported format, 0 errors Reading /builddir/build/BUILD/python-pypet-0.6.1-build/SPECPARTS/rpm-debuginfo.specpart Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.IzFCeJ + umask 022 + cd /builddir/build/BUILD/python-pypet-0.6.1-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd pypet-0.6.1 + '[' '!' -f /builddir/build/BUILD/python-pypet-0.6.1-build/python-pypet-0.6.1-7.fc42.x86_64-pyproject-modules ']' + PATH=/builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin + PYTHONPATH=/builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib64/python3.13/site-packages:/builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages + _PYTHONSITE=/builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib64/python3.13/site-packages:/builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages + PYTHONDONTWRITEBYTECODE=1 + /usr/bin/python3 -sP /usr/lib/rpm/redhat/import_all_modules.py -f /builddir/build/BUILD/python-pypet-0.6.1-build/python-pypet-0.6.1-7.fc42.x86_64-pyproject-modules -e '*tests*' Check import: pypet Check import: pypet.annotations Check import: pypet.brian2 Check import: pypet.brian2.network Check import: pypet.brian2.parameter Check import: pypet.environment Check import: pypet.naturalnaming Check import: pypet.parameter Check import: pypet.pypetconstants Check import: pypet.pypetexceptions Check import: pypet.pypetlogging Check import: pypet.shareddata Check import: pypet.slots Check import: pypet.storageservice Check import: pypet.trajectory Check import: pypet.utils Check import: pypet.utils.comparisons Check import: pypet.utils.configparsing Check import: pypet.utils.decorators Check import: pypet.utils.dynamicimports Check import: pypet.utils.explore Check import: pypet.utils.gitintegration Check import: pypet.utils.hdf5compression Check import: pypet.utils.helpful_classes Check import: pypet.utils.helpful_functions Check import: pypet.utils.mpwrappers Check import: pypet.utils.pypettest Check import: pypet.utils.siginthandling Check import: pypet.utils.storagefactory Check import: pypet.utils.trajectory_utils + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + PATH=/builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin + PYTHONPATH=/builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib64/python3.13/site-packages:/builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages + PYTHONDONTWRITEBYTECODE=1 + PYTEST_ADDOPTS=' --ignore=/builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/.pyproject-builddir' + PYTEST_XDIST_AUTO_NUM_WORKERS=4 + /usr/bin/python3 pypet/tests/all_tests.py test_annotations_insert (unittests.annotations_test.AnnotationsTest.test_annotations_insert) ... DEBUG:pypet.trajectory.Trajectory:Added wildcard function `('$', 'crun')`. DEBUG:pypet.trajectory.Trajectory:Added wildcard function `('$set', 'crunset')`. INFO:pypet.storageservice.HDF5StorageService:I will use the hdf5 file `/tmp/tmp_pypet_tests/experiments/tests/HDF5/annotations.hdf5`. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.config_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.parameters_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.derived_parameters_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.results_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.explored_parameters_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.derived_parameters_summary` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.results_summary` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.purge_duplicate_comments` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.results_per_run` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.derived_parameters_per_run` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.complevel` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.complib` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.encoding` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.fletcher32` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.shuffle` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.pandas_format` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `results.testres` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `parameters.testgroup.testparam` to trajectory. Level 21:root:REMOVING ALL TEMPORARY DATA ok test_attribute_deletion (unittests.annotations_test.AnnotationsTest.test_attribute_deletion) ... DEBUG:pypet.trajectory.Trajectory:Added wildcard function `('$', 'crun')`. DEBUG:pypet.trajectory.Trajectory:Added wildcard function `('$set', 'crunset')`. INFO:pypet.storageservice.HDF5StorageService:I will use the hdf5 file `/tmp/tmp_pypet_tests/experiments/tests/HDF5/annotations.hdf5`. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.config_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.parameters_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.derived_parameters_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.results_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.explored_parameters_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.derived_parameters_summary` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.results_summary` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.purge_duplicate_comments` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.results_per_run` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.derived_parameters_per_run` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.complevel` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.complib` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.encoding` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.fletcher32` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.shuffle` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.pandas_format` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `results.testres` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `parameters.testgroup.testparam` to trajectory. Level 21:root:REMOVING ALL TEMPORARY DATA ok test_f_get_errors (unittests.annotations_test.AnnotationsTest.test_f_get_errors) ... DEBUG:pypet.trajectory.Trajectory:Added wildcard function `('$', 'crun')`. DEBUG:pypet.trajectory.Trajectory:Added wildcard function `('$set', 'crunset')`. INFO:pypet.storageservice.HDF5StorageService:I will use the hdf5 file `/tmp/tmp_pypet_tests/experiments/tests/HDF5/annotations.hdf5`. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.config_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.parameters_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.derived_parameters_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.results_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.explored_parameters_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.derived_parameters_summary` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.results_summary` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.purge_duplicate_comments` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.results_per_run` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.derived_parameters_per_run` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.complevel` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.complib` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.encoding` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.fletcher32` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.shuffle` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.pandas_format` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `results.testres` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `parameters.testgroup.testparam` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `parameters.ggg` to trajectory. Level 21:root:REMOVING ALL TEMPORARY DATA ok test_f_set_numbering (unittests.annotations_test.AnnotationsTest.test_f_set_numbering) ... DEBUG:pypet.trajectory.Trajectory:Added wildcard function `('$', 'crun')`. DEBUG:pypet.trajectory.Trajectory:Added wildcard function `('$set', 'crunset')`. INFO:pypet.storageservice.HDF5StorageService:I will use the hdf5 file `/tmp/tmp_pypet_tests/experiments/tests/HDF5/annotations.hdf5`. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.config_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.parameters_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.derived_parameters_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.results_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.explored_parameters_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.derived_parameters_summary` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.results_summary` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.purge_duplicate_comments` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.results_per_run` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.derived_parameters_per_run` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.complevel` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.complib` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.encoding` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.fletcher32` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.shuffle` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.pandas_format` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `results.testres` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `parameters.testgroup.testparam` to trajectory. Level 21:root:REMOVING ALL TEMPORARY DATA ok test_get_annotations (unittests.annotations_test.AnnotationsTest.test_get_annotations) ... DEBUG:pypet.trajectory.Trajectory:Added wildcard function `('$', 'crun')`. DEBUG:pypet.trajectory.Trajectory:Added wildcard function `('$set', 'crunset')`. INFO:pypet.storageservice.HDF5StorageService:I will use the hdf5 file `/tmp/tmp_pypet_tests/experiments/tests/HDF5/annotations.hdf5`. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.config_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.parameters_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.derived_parameters_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.results_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.explored_parameters_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.derived_parameters_summary` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.results_summary` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.purge_duplicate_comments` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.results_per_run` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.derived_parameters_per_run` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.complevel` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.complib` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.encoding` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.fletcher32` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.shuffle` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.pandas_format` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `results.testres` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `parameters.testgroup.testparam` to trajectory. Level 21:root:REMOVING ALL TEMPORARY DATA ok test_get_item (unittests.annotations_test.AnnotationsTest.test_get_item) ... DEBUG:pypet.trajectory.Trajectory:Added wildcard function `('$', 'crun')`. DEBUG:pypet.trajectory.Trajectory:Added wildcard function `('$set', 'crunset')`. INFO:pypet.storageservice.HDF5StorageService:I will use the hdf5 file `/tmp/tmp_pypet_tests/experiments/tests/HDF5/annotations.hdf5`. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.config_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.parameters_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.derived_parameters_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.results_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.explored_parameters_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.derived_parameters_summary` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.results_summary` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.purge_duplicate_comments` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.results_per_run` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.derived_parameters_per_run` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.complevel` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.complib` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.encoding` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.fletcher32` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.shuffle` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.pandas_format` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `results.testres` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `parameters.testgroup.testparam` to trajectory. Level 21:root:REMOVING ALL TEMPORARY DATA ok test_get_item_no_copy (unittests.annotations_test.AnnotationsTest.test_get_item_no_copy) ... DEBUG:pypet.trajectory.Trajectory:Added wildcard function `('$', 'crun')`. DEBUG:pypet.trajectory.Trajectory:Added wildcard function `('$set', 'crunset')`. INFO:pypet.storageservice.HDF5StorageService:I will use the hdf5 file `/tmp/tmp_pypet_tests/experiments/tests/HDF5/annotations.hdf5`. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.config_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.parameters_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.derived_parameters_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.results_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.explored_parameters_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.derived_parameters_summary` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.results_summary` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.purge_duplicate_comments` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.results_per_run` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.derived_parameters_per_run` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.complevel` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.complib` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.encoding` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.fletcher32` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.shuffle` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.pandas_format` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `results.testres` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `parameters.testgroup.testparam` to trajectory. Level 21:root:REMOVING ALL TEMPORARY DATA ok test_item_deletion (unittests.annotations_test.AnnotationsTest.test_item_deletion) ... DEBUG:pypet.trajectory.Trajectory:Added wildcard function `('$', 'crun')`. DEBUG:pypet.trajectory.Trajectory:Added wildcard function `('$set', 'crunset')`. INFO:pypet.storageservice.HDF5StorageService:I will use the hdf5 file `/tmp/tmp_pypet_tests/experiments/tests/HDF5/annotations.hdf5`. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.config_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.parameters_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.derived_parameters_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.results_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.explored_parameters_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.derived_parameters_summary` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.results_summary` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.purge_duplicate_comments` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.results_per_run` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.derived_parameters_per_run` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.complevel` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.complib` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.encoding` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.fletcher32` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.shuffle` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.pandas_format` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `results.testres` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `parameters.testgroup.testparam` to trajectory. Level 21:root:REMOVING ALL TEMPORARY DATA ok test_pickling (unittests.annotations_test.AnnotationsTest.test_pickling) ... DEBUG:pypet.trajectory.Trajectory:Added wildcard function `('$', 'crun')`. DEBUG:pypet.trajectory.Trajectory:Added wildcard function `('$set', 'crunset')`. INFO:pypet.storageservice.HDF5StorageService:I will use the hdf5 file `/tmp/tmp_pypet_tests/experiments/tests/HDF5/annotations.hdf5`. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.config_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.parameters_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.derived_parameters_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.results_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.explored_parameters_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.derived_parameters_summary` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.results_summary` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.purge_duplicate_comments` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.results_per_run` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.derived_parameters_per_run` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.complevel` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.complib` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.encoding` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.fletcher32` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.shuffle` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.pandas_format` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `results.testres` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `parameters.testgroup.testparam` to trajectory. Level 21:root:REMOVING ALL TEMPORARY DATA ok test_single_get_and_getattr_and_setattr (unittests.annotations_test.AnnotationsTest.test_single_get_and_getattr_and_setattr) ... DEBUG:pypet.trajectory.Trajectory:Added wildcard function `('$', 'crun')`. DEBUG:pypet.trajectory.Trajectory:Added wildcard function `('$set', 'crunset')`. INFO:pypet.storageservice.HDF5StorageService:I will use the hdf5 file `/tmp/tmp_pypet_tests/experiments/tests/HDF5/annotations.hdf5`. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.config_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.parameters_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.derived_parameters_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.results_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.explored_parameters_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.derived_parameters_summary` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.results_summary` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.purge_duplicate_comments` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.results_per_run` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.derived_parameters_per_run` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.complevel` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.complib` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.encoding` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.fletcher32` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.shuffle` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.pandas_format` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `results.testres` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `parameters.testgroup.testparam` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `parameters.test2` to trajectory. Level 21:root:REMOVING ALL TEMPORARY DATA ok test_storage_and_loading (unittests.annotations_test.AnnotationsTest.test_storage_and_loading) ... DEBUG:pypet.trajectory.Trajectory:Added wildcard function `('$', 'crun')`. DEBUG:pypet.trajectory.Trajectory:Added wildcard function `('$set', 'crunset')`. INFO:pypet.storageservice.HDF5StorageService:I will use the hdf5 file `/tmp/tmp_pypet_tests/experiments/tests/HDF5/annotations.hdf5`. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.config_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.parameters_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.derived_parameters_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.results_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.explored_parameters_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.derived_parameters_summary` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.results_summary` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.purge_duplicate_comments` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.results_per_run` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.derived_parameters_per_run` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.complevel` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.complib` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.encoding` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.fletcher32` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.shuffle` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.pandas_format` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `results.testres` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `parameters.testgroup.testparam` to trajectory. DEBUG:pypet.storageservice.HDF5StorageService:Opening HDF5 file `/tmp/tmp_pypet_tests/experiments/tests/HDF5/annotations.hdf5` in mode `a` with trajectory `Annotations` INFO:pypet.storageservice.HDF5StorageService:Start storing Trajectory `Annotations`. INFO:pypet.storageservice.HDF5StorageService:Storing branch `config`. DEBUG:pypet.storageservice.HDF5StorageService:Storing `config.hdf5.pandas_format`. DEBUG:pypet.storageservice.HDF5StorageService:Storing `config.hdf5.shuffle`. DEBUG:pypet.storageservice.HDF5StorageService:Storing `config.hdf5.fletcher32`. DEBUG:pypet.storageservice.HDF5StorageService:Storing `config.hdf5.encoding`. DEBUG:pypet.storageservice.HDF5StorageService:Storing `config.hdf5.complib`. DEBUG:pypet.storageservice.HDF5StorageService:Storing `config.hdf5.complevel`. DEBUG:pypet.storageservice.HDF5StorageService:Storing `config.hdf5.derived_parameters_per_run`. DEBUG:pypet.storageservice.HDF5StorageService:Storing `config.hdf5.results_per_run`. DEBUG:pypet.storageservice.HDF5StorageService:Storing `config.hdf5.purge_duplicate_comments`. DEBUG:pypet.storageservice.HDF5StorageService:Storing `config.hdf5.overview.results_summary`. DEBUG:pypet.storageservice.HDF5StorageService:Storing `config.hdf5.overview.derived_parameters_summary`. DEBUG:pypet.storageservice.HDF5StorageService:Storing `config.hdf5.overview.explored_parameters_overview`. DEBUG:pypet.storageservice.HDF5StorageService:Storing `config.hdf5.overview.results_overview`. DEBUG:pypet.storageservice.HDF5StorageService:Storing `config.hdf5.overview.derived_parameters_overview`. DEBUG:pypet.storageservice.HDF5StorageService:Storing `config.hdf5.overview.parameters_overview`. DEBUG:pypet.storageservice.HDF5StorageService:Storing `config.hdf5.overview.config_overview`. INFO:pypet.storageservice.HDF5StorageService:Storing branch `results`. DEBUG:pypet.storageservice.HDF5StorageService:Storing `results.testres`. INFO:pypet.storageservice.HDF5StorageService:Storing branch `parameters`. DEBUG:pypet.storageservice.HDF5StorageService:Storing `parameters.testgroup.testparam`. INFO:pypet.storageservice.HDF5StorageService:Finished storing Trajectory `Annotations`. DEBUG:pypet.storageservice.HDF5StorageService:Closing HDF5 file DEBUG:pypet.trajectory.Trajectory:Added wildcard function `('$', 'crun')`. DEBUG:pypet.trajectory.Trajectory:Added wildcard function `('$set', 'crunset')`. INFO:pypet.storageservice.HDF5StorageService:I will use the hdf5 file `/tmp/tmp_pypet_tests/experiments/tests/HDF5/annotations.hdf5`. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.config_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.parameters_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.derived_parameters_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.results_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.explored_parameters_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.derived_parameters_summary` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.results_summary` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.purge_duplicate_comments` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.results_per_run` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.derived_parameters_per_run` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.complevel` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.complib` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.encoding` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.fletcher32` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.shuffle` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.pandas_format` to trajectory. DEBUG:pypet.storageservice.HDF5StorageService:Opening HDF5 file `/tmp/tmp_pypet_tests/experiments/tests/HDF5/annotations.hdf5` in mode `r` with trajectory `Annotations` INFO:pypet.storageservice.HDF5StorageService:Loading trajectory `Annotations`. INFO:pypet.storageservice.HDF5StorageService:Loading branch `config` in mode `2`. INFO:pypet.storageservice.HDF5StorageService:Loading branch `parameters` in mode `2`. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `parameters.testgroup.testparam` to trajectory. DEBUG:pypet.storageservice.HDF5StorageService:Loading data of parameters.testgroup.testparam INFO:pypet.storageservice.HDF5StorageService:Loading branch `results` in mode `2`. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `results.testres` to trajectory. DEBUG:pypet.storageservice.HDF5StorageService:Loading data of results.testres DEBUG:pypet.storageservice.HDF5StorageService:Closing HDF5 file Level 21:root:REMOVING ALL TEMPORARY DATA ok test_to_str (unittests.annotations_test.AnnotationsTest.test_to_str) ... DEBUG:pypet.trajectory.Trajectory:Added wildcard function `('$', 'crun')`. DEBUG:pypet.trajectory.Trajectory:Added wildcard function `('$set', 'crunset')`. INFO:pypet.storageservice.HDF5StorageService:I will use the hdf5 file `/tmp/tmp_pypet_tests/experiments/tests/HDF5/annotations.hdf5`. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.config_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.parameters_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.derived_parameters_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.results_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.explored_parameters_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.derived_parameters_summary` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.results_summary` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.purge_duplicate_comments` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.results_per_run` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.derived_parameters_per_run` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.complevel` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.complib` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.encoding` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.fletcher32` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.shuffle` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.pandas_format` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `results.testres` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `parameters.testgroup.testparam` to trajectory. Level 21:root:REMOVING ALL TEMPORARY DATA ok test_cannot_expand_and_not_explore_throwing_type_error (unittests.parameter_test.ArrayParameterTest.test_cannot_expand_and_not_explore_throwing_type_error) ... ok test_equal_values (unittests.parameter_test.ArrayParameterTest.test_equal_values) ... ok test_expanding (unittests.parameter_test.ArrayParameterTest.test_expanding) ... ok test_expanding_type_error (unittests.parameter_test.ArrayParameterTest.test_expanding_type_error) ... ok test_exploration (unittests.parameter_test.ArrayParameterTest.test_exploration) ... ok test_get_data (unittests.parameter_test.ArrayParameterTest.test_get_data) ... ok test_get_item (unittests.parameter_test.ArrayParameterTest.test_get_item) ... ok test_meta_settings (unittests.parameter_test.ArrayParameterTest.test_meta_settings) ... ok test_param_accepts_not_unsupported_data (unittests.parameter_test.ArrayParameterTest.test_param_accepts_not_unsupported_data) ... ok test_parameter_access_throws_ValueError (unittests.parameter_test.ArrayParameterTest.test_parameter_access_throws_ValueError) ... ok test_parameter_locking (unittests.parameter_test.ArrayParameterTest.test_parameter_locking) ... ok test_pickling_with_mocking_multiprocessing (unittests.parameter_test.ArrayParameterTest.test_pickling_with_mocking_multiprocessing) ... ok test_pickling_without_multiprocessing (unittests.parameter_test.ArrayParameterTest.test_pickling_without_multiprocessing) ... ok test_rename (unittests.parameter_test.ArrayParameterTest.test_rename) ... ok test_resizing_and_deletion (unittests.parameter_test.ArrayParameterTest.test_resizing_and_deletion) ... ok test_storage_and_loading (unittests.parameter_test.ArrayParameterTest.test_storage_and_loading) ... ok test_store_load_with_hdf5 (unittests.parameter_test.ArrayParameterTest.test_store_load_with_hdf5) ... ok test_store_load_with_hdf5_no_data (unittests.parameter_test.ArrayParameterTest.test_store_load_with_hdf5_no_data) ... ok test_the_insertion_made_implicetly_in_setUp (unittests.parameter_test.ArrayParameterTest.test_the_insertion_made_implicetly_in_setUp) ... ok test_type_error_for_exploring_if_range_does_not_match (unittests.parameter_test.ArrayParameterTest.test_type_error_for_exploring_if_range_does_not_match) ... ok test_type_error_for_get_item (unittests.parameter_test.ArrayParameterTest.test_type_error_for_get_item) ... ok test_type_error_for_not_supported_data (unittests.parameter_test.ArrayParameterTest.test_type_error_for_not_supported_data) ... ok test_type_error_for_shrink (unittests.parameter_test.ArrayParameterTest.test_type_error_for_shrink) ... ok test_values_of_same_type (unittests.parameter_test.ArrayParameterTest.test_values_of_same_type) ... ok test_with_pre_run (integration.brian2tests.network_test.Brain2NetworkTest.test_with_pre_run) ... SCOOP NOT running! SCOOP NOT running! SCOOP NOT running! SCOOP NOT running! SCOOP NOT running! SCOOP NOT running! Starting simulation at t=0. s for a duration of 100. ms 100. ms (100%) simulated in < 1s Starting simulation at t=100. ms for a duration of 300. ms Starting simulation at t=100. ms for a duration of 300. ms 300. ms (100%) simulated in < 1s 300. ms (100%) simulated in < 1s ok test_with_pre_run_single_core (integration.brian2tests.network_test.Brain2NetworkTest.test_with_pre_run_single_core) ... Starting simulation at t=0. s for a duration of 100. ms 100. ms (100%) simulated in < 1s Starting simulation at t=100. ms for a duration of 300. ms 300. ms (100%) simulated in < 1s Starting simulation at t=100. ms for a duration of 300. ms 300. ms (100%) simulated in < 1s ok test_without_pre_run (integration.brian2tests.network_test.Brain2NetworkTest.test_without_pre_run) ... Starting simulation at t=0. s for a duration of 300. ms Starting simulation at t=0. s for a duration of 300. ms 300. ms (100%) simulated in < 1s 300. ms (100%) simulated in < 1s ok test_net (integration.brian2tests.another_network_test.Brian2FullNetworkTest.test_net) ... Starting simulation at t=0. s for a duration of 250. ms 250. ms (100%) simulated in < 1s Starting simulation at t=0. s for a duration of 250. ms 250. ms (100%) simulated in < 1s Starting simulation at t=0. s for a duration of 250. ms 250. ms (100%) simulated in < 1s ok test_get_unit_fast (unittests.brian2tests.brian2_parameter_test.Brian2GetUnitFastTest.test_get_unit_fast) ... ok Starting simulation at t=0. s for a duration of 10. ms 10. ms (100%) simulated in < 1s test_Attribute_error_for_get_item (unittests.brian2tests.brian2_monitor_test.Brian2MonitorTest.test_Attribute_error_for_get_item) ... ok test_contains (unittests.brian2tests.brian2_monitor_test.Brian2MonitorTest.test_contains) ... ok test_deletion (unittests.brian2tests.brian2_monitor_test.Brian2MonitorTest.test_deletion) ... ok test_deletion_throws_error_if_item_not_there (unittests.brian2tests.brian2_monitor_test.Brian2MonitorTest.test_deletion_throws_error_if_item_not_there) ... ok test_dir (unittests.brian2tests.brian2_monitor_test.Brian2MonitorTest.test_dir) ... ok test_emptying (unittests.brian2tests.brian2_monitor_test.Brian2MonitorTest.test_emptying) ... ok test_f_get_errors (unittests.brian2tests.brian2_monitor_test.Brian2MonitorTest.test_f_get_errors) ... ok test_f_get_many_items (unittests.brian2tests.brian2_monitor_test.Brian2MonitorTest.test_f_get_many_items) ... ok test_f_to_dict_no_copy (unittests.brian2tests.brian2_monitor_test.Brian2MonitorTest.test_f_to_dict_no_copy) ... ok test_failing_adding_another_monitor (unittests.brian2tests.brian2_monitor_test.Brian2MonitorTest.test_failing_adding_another_monitor) ... ok test_get_data (unittests.brian2tests.brian2_monitor_test.Brian2MonitorTest.test_get_data) ... ok test_get_item (unittests.brian2tests.brian2_monitor_test.Brian2MonitorTest.test_get_item) ... ok test_getattr_and_setattr (unittests.brian2tests.brian2_monitor_test.Brian2MonitorTest.test_getattr_and_setattr) ... ok test_iter (unittests.brian2tests.brian2_monitor_test.Brian2MonitorTest.test_iter) ... ok test_meta_settings (unittests.brian2tests.brian2_monitor_test.Brian2MonitorTest.test_meta_settings) ... ok test_natural_naming (unittests.brian2tests.brian2_monitor_test.Brian2MonitorTest.test_natural_naming) ... ok test_pickling (unittests.brian2tests.brian2_monitor_test.Brian2MonitorTest.test_pickling) ... ok test_reject_outer_data_structure (unittests.brian2tests.brian2_monitor_test.Brian2MonitorTest.test_reject_outer_data_structure) ... ok test_rename (unittests.brian2tests.brian2_monitor_test.Brian2MonitorTest.test_rename) ... ok test_set_item_via_number (unittests.brian2tests.brian2_monitor_test.Brian2MonitorTest.test_set_item_via_number) ... ok test_set_numbering (unittests.brian2tests.brian2_monitor_test.Brian2MonitorTest.test_set_numbering) ... ok test_storage_and_loading (unittests.brian2tests.brian2_monitor_test.Brian2MonitorTest.test_storage_and_loading) ... ok test_store_load_with_hdf5 (unittests.brian2tests.brian2_monitor_test.Brian2MonitorTest.test_store_load_with_hdf5) ... ok test_string_representation (unittests.brian2tests.brian2_monitor_test.Brian2MonitorTest.test_string_representation) ... ok test_the_insertion_made_implicetly_in_setUp (unittests.brian2tests.brian2_monitor_test.Brian2MonitorTest.test_the_insertion_made_implicetly_in_setUp) ... ok test_warning (unittests.brian2tests.brian2_monitor_test.Brian2MonitorTest.test_warning) ... ok test_expanding (unittests.brian2tests.brian2_parameter_test.Brian2ParameterDuplicatesInStoreTest.test_expanding) ... ok test_exploration (unittests.brian2tests.brian2_parameter_test.Brian2ParameterDuplicatesInStoreTest.test_exploration) ... ok test_loading_and_expanding (unittests.brian2tests.brian2_parameter_test.Brian2ParameterDuplicatesInStoreTest.test_loading_and_expanding) ... ok test_meta_settings (unittests.brian2tests.brian2_parameter_test.Brian2ParameterDuplicatesInStoreTest.test_meta_settings) ... ok test_storage_and_loading (unittests.brian2tests.brian2_parameter_test.Brian2ParameterDuplicatesInStoreTest.test_storage_and_loading) ... ok test_the_insertion_made_implicetly_in_setUp (unittests.brian2tests.brian2_parameter_test.Brian2ParameterDuplicatesInStoreTest.test_the_insertion_made_implicetly_in_setUp) ... ok test_cannot_expand_and_not_explore_throwing_type_error (unittests.brian2tests.brian2_parameter_test.Brian2ParameterTest.test_cannot_expand_and_not_explore_throwing_type_error) ... ok test_equal_values (unittests.brian2tests.brian2_parameter_test.Brian2ParameterTest.test_equal_values) ... ok test_expanding (unittests.brian2tests.brian2_parameter_test.Brian2ParameterTest.test_expanding) ... ok test_expanding_type_error (unittests.brian2tests.brian2_parameter_test.Brian2ParameterTest.test_expanding_type_error) ... ok test_exploration (unittests.brian2tests.brian2_parameter_test.Brian2ParameterTest.test_exploration) ... ok test_false_on_values_not_of_same_type (unittests.brian2tests.brian2_parameter_test.Brian2ParameterTest.test_false_on_values_not_of_same_type) ... ok test_get_data (unittests.brian2tests.brian2_parameter_test.Brian2ParameterTest.test_get_data) ... ok test_get_item (unittests.brian2tests.brian2_parameter_test.Brian2ParameterTest.test_get_item) ... ok test_meta_settings (unittests.brian2tests.brian2_parameter_test.Brian2ParameterTest.test_meta_settings) ... ok test_param_accepts_not_unsupported_data (unittests.brian2tests.brian2_parameter_test.Brian2ParameterTest.test_param_accepts_not_unsupported_data) ... ok test_parameter_access_throws_ValueError (unittests.brian2tests.brian2_parameter_test.Brian2ParameterTest.test_parameter_access_throws_ValueError) ... ok test_parameter_locking (unittests.brian2tests.brian2_parameter_test.Brian2ParameterTest.test_parameter_locking) ... ok test_pickling_with_mocking_multiprocessing (unittests.brian2tests.brian2_parameter_test.Brian2ParameterTest.test_pickling_with_mocking_multiprocessing) ... ok test_pickling_without_multiprocessing (unittests.brian2tests.brian2_parameter_test.Brian2ParameterTest.test_pickling_without_multiprocessing) ... ok test_rename (unittests.brian2tests.brian2_parameter_test.Brian2ParameterTest.test_rename) ... ok test_resizing_and_deletion (unittests.brian2tests.brian2_parameter_test.Brian2ParameterTest.test_resizing_and_deletion) ... ok test_storage_and_loading (unittests.brian2tests.brian2_parameter_test.Brian2ParameterTest.test_storage_and_loading) ... ok test_store_load_with_hdf5 (unittests.brian2tests.brian2_parameter_test.Brian2ParameterTest.test_store_load_with_hdf5) ... ok test_store_load_with_hdf5_no_data (unittests.brian2tests.brian2_parameter_test.Brian2ParameterTest.test_store_load_with_hdf5_no_data) ... ok test_supports (unittests.brian2tests.brian2_parameter_test.Brian2ParameterTest.test_supports) ... ok test_the_insertion_made_implicetly_in_setUp (unittests.brian2tests.brian2_parameter_test.Brian2ParameterTest.test_the_insertion_made_implicetly_in_setUp) ... ok test_type_error_for_exploring_if_range_does_not_match (unittests.brian2tests.brian2_parameter_test.Brian2ParameterTest.test_type_error_for_exploring_if_range_does_not_match) ... ok test_type_error_for_get_item (unittests.brian2tests.brian2_parameter_test.Brian2ParameterTest.test_type_error_for_get_item) ... ok test_type_error_for_not_supported_data (unittests.brian2tests.brian2_parameter_test.Brian2ParameterTest.test_type_error_for_not_supported_data) ... ok test_type_error_for_shrink (unittests.brian2tests.brian2_parameter_test.Brian2ParameterTest.test_type_error_for_shrink) ... ok test_values_of_same_type (unittests.brian2tests.brian2_parameter_test.Brian2ParameterTest.test_values_of_same_type) ... ok test_Attribute_error_for_get_item (unittests.brian2tests.brian2_parameter_test.Brian2ResultTest.test_Attribute_error_for_get_item) ... ok test_contains (unittests.brian2tests.brian2_parameter_test.Brian2ResultTest.test_contains) ... ok test_deletion (unittests.brian2tests.brian2_parameter_test.Brian2ResultTest.test_deletion) ... ok test_deletion_throws_error_if_item_not_there (unittests.brian2tests.brian2_parameter_test.Brian2ResultTest.test_deletion_throws_error_if_item_not_there) ... ok test_dir (unittests.brian2tests.brian2_parameter_test.Brian2ResultTest.test_dir) ... ok test_emptying (unittests.brian2tests.brian2_parameter_test.Brian2ResultTest.test_emptying) ... ok test_f_get_errors (unittests.brian2tests.brian2_parameter_test.Brian2ResultTest.test_f_get_errors) ... ok test_f_get_many_items (unittests.brian2tests.brian2_parameter_test.Brian2ResultTest.test_f_get_many_items) ... ok test_f_to_dict_no_copy (unittests.brian2tests.brian2_parameter_test.Brian2ResultTest.test_f_to_dict_no_copy) ... ok test_get_data (unittests.brian2tests.brian2_parameter_test.Brian2ResultTest.test_get_data) ... ok test_get_item (unittests.brian2tests.brian2_parameter_test.Brian2ResultTest.test_get_item) ... ok test_getattr_and_setattr (unittests.brian2tests.brian2_parameter_test.Brian2ResultTest.test_getattr_and_setattr) ... ok test_illegal_naming (unittests.brian2tests.brian2_parameter_test.Brian2ResultTest.test_illegal_naming) ... ok test_iter (unittests.brian2tests.brian2_parameter_test.Brian2ResultTest.test_iter) ... ok test_meta_settings (unittests.brian2tests.brian2_parameter_test.Brian2ResultTest.test_meta_settings) ... ok test_natural_naming (unittests.brian2tests.brian2_parameter_test.Brian2ResultTest.test_natural_naming) ... ok test_pickling (unittests.brian2tests.brian2_parameter_test.Brian2ResultTest.test_pickling) ... ok test_reject_outer_data_structure (unittests.brian2tests.brian2_parameter_test.Brian2ResultTest.test_reject_outer_data_structure) ... ok test_rename (unittests.brian2tests.brian2_parameter_test.Brian2ResultTest.test_rename) ... ok test_set_item_via_number (unittests.brian2tests.brian2_parameter_test.Brian2ResultTest.test_set_item_via_number) ... ok test_set_numbering (unittests.brian2tests.brian2_parameter_test.Brian2ResultTest.test_set_numbering) ... ok test_storage_and_loading (unittests.brian2tests.brian2_parameter_test.Brian2ResultTest.test_storage_and_loading) ... ok test_store_load_with_hdf5 (unittests.brian2tests.brian2_parameter_test.Brian2ResultTest.test_store_load_with_hdf5) ... ok test_string_representation (unittests.brian2tests.brian2_parameter_test.Brian2ResultTest.test_string_representation) ... ok test_the_insertion_made_implicetly_in_setUp (unittests.brian2tests.brian2_parameter_test.Brian2ResultTest.test_the_insertion_made_implicetly_in_setUp) ... ok test_warning (unittests.brian2tests.brian2_parameter_test.Brian2ResultTest.test_warning) ... ok test_hdf5_store_load_monitorresult (integration.brian2tests.hdf5_brian2_test.Brian2hdf5Test.test_hdf5_store_load_monitorresult) ... ok test_hdf5_store_load_parameter (integration.brian2tests.hdf5_brian2_test.Brian2hdf5Test.test_hdf5_store_load_parameter) ... ok test_hdf5_store_load_result (integration.brian2tests.hdf5_brian2_test.Brian2hdf5Test.test_hdf5_store_load_result) ... ok test_NOT_purge_duplicate_comments (integration.environment_multiproc_test.CapTest.test_NOT_purge_duplicate_comments) ... skipped 'Only makes sense if psutil is installed' test_a_large_run (integration.environment_multiproc_test.CapTest.test_a_large_run) ... skipped 'Only makes sense if psutil is installed' test_errors (integration.environment_multiproc_test.CapTest.test_errors) ... skipped 'Only makes sense if psutil is installed' test_expand (integration.environment_multiproc_test.CapTest.test_expand) ... skipped 'Only makes sense if psutil is installed' test_expand_after_reload (integration.environment_multiproc_test.CapTest.test_expand_after_reload) ... skipped 'Only makes sense if psutil is installed' test_file_overwriting (integration.environment_multiproc_test.CapTest.test_file_overwriting) ... skipped 'Only makes sense if psutil is installed' test_just_one_run (integration.environment_multiproc_test.CapTest.test_just_one_run) ... skipped 'Only makes sense if psutil is installed' test_niceness (integration.environment_multiproc_test.CapTest.test_niceness) ... skipped 'Only makes sense if psutil is installed' test_purge_duplicate_comments (integration.environment_multiproc_test.CapTest.test_purge_duplicate_comments) ... skipped 'Only makes sense if psutil is installed' test_run (integration.environment_multiproc_test.CapTest.test_run) ... skipped 'Only makes sense if psutil is installed' test_run_complex (integration.environment_multiproc_test.CapTest.test_run_complex) ... skipped 'Only makes sense if psutil is installed' test_store_form_tuple (integration.environment_multiproc_test.CapTest.test_store_form_tuple) ... skipped 'Only makes sense if psutil is installed' test_store_single_group (integration.environment_multiproc_test.CapTest.test_store_single_group) ... skipped 'Only makes sense if psutil is installed' test_switch_ON_large_tables (integration.environment_multiproc_test.CapTest.test_switch_ON_large_tables) ... skipped 'Only makes sense if psutil is installed' test_switch_off_all_tables (integration.environment_multiproc_test.CapTest.test_switch_off_all_tables) ... skipped 'Only makes sense if psutil is installed' test_switch_on_all_comments (integration.environment_multiproc_test.CapTest.test_switch_on_all_comments) ... skipped 'Only makes sense if psutil is installed' test_time_display_of_loading (integration.environment_multiproc_test.CapTest.test_time_display_of_loading) ... skipped 'Only makes sense if psutil is installed' test_two_runs (integration.environment_multiproc_test.CapTest.test_two_runs) ... skipped 'Only makes sense if psutil is installed' test_cartesian_product (unittests.utils_test.CartesianTest.test_cartesian_product) ... ok test_cartesian_product_combined_params (unittests.utils_test.CartesianTest.test_cartesian_product_combined_params) ... ok test_parsing (unittests.configparse_test.ConfigParseTest.test_parsing) ... MainProcess STDOUT CRITICAL Established redirection of `stdout`. ok test_continueing (integration.removal_and_continue_test.ContinueMPPoolTest.test_continueing) ... skipped 'Only makes sense if dill is installed' test_continueing_mp (integration.removal_and_continue_test.ContinueMPPoolTest.test_continueing_mp) ... skipped 'Only makes sense if dill is installed' test_continueing_mp_custom (integration.removal_and_continue_test.ContinueMPPoolTest.test_continueing_mp_custom) ... skipped 'Only makes sense if dill is installed' test_continueing_remove_completed (integration.removal_and_continue_test.ContinueMPPoolTest.test_continueing_remove_completed) ... skipped 'Only makes sense if dill is installed' test_multiple_storage_and_loading (integration.removal_and_continue_test.ContinueMPPoolTest.test_multiple_storage_and_loading) ... skipped 'Only makes sense if dill is installed' test_removal (integration.removal_and_continue_test.ContinueMPPoolTest.test_removal) ... skipped 'Only makes sense if dill is installed' test_continueing (integration.removal_and_continue_test.ContinueMPTest.test_continueing) ... skipped 'Only makes sense if dill is installed' test_continueing_mp (integration.removal_and_continue_test.ContinueMPTest.test_continueing_mp) ... skipped 'Only makes sense if dill is installed' test_continueing_mp_custom (integration.removal_and_continue_test.ContinueMPTest.test_continueing_mp_custom) ... skipped 'Only makes sense if dill is installed' test_continueing_remove_completed (integration.removal_and_continue_test.ContinueMPTest.test_continueing_remove_completed) ... skipped 'Only makes sense if dill is installed' test_multiple_storage_and_loading (integration.removal_and_continue_test.ContinueMPTest.test_multiple_storage_and_loading) ... skipped 'Only makes sense if dill is installed' test_removal (integration.removal_and_continue_test.ContinueMPTest.test_removal) ... skipped 'Only makes sense if dill is installed' test_continueing (integration.removal_and_continue_test.ContinueTest.test_continueing) ... skipped 'Only makes sense if dill is installed' test_continueing_remove_completed (integration.removal_and_continue_test.ContinueTest.test_continueing_remove_completed) ... skipped 'Only makes sense if dill is installed' test_multiple_storage_and_loading (integration.removal_and_continue_test.ContinueTest.test_multiple_storage_and_loading) ... skipped 'Only makes sense if dill is installed' test_removal (integration.removal_and_continue_test.ContinueTest.test_removal) ... skipped 'Only makes sense if dill is installed' test_NOT_purge_duplicate_comments (pypet.tests.integration.environment_test.EnvironmentTest.test_NOT_purge_duplicate_comments) ... ok test_a_large_run (pypet.tests.integration.environment_test.EnvironmentTest.test_a_large_run) ... ok test_errors (pypet.tests.integration.environment_test.EnvironmentTest.test_errors) ... ok test_expand (pypet.tests.integration.environment_test.EnvironmentTest.test_expand) ... ok test_expand_after_reload (pypet.tests.integration.environment_test.EnvironmentTest.test_expand_after_reload) ... ok test_file_overwriting (pypet.tests.integration.environment_test.EnvironmentTest.test_file_overwriting) ... ok test_just_one_run (pypet.tests.integration.environment_test.EnvironmentTest.test_just_one_run) ... ok test_niceness (pypet.tests.integration.environment_test.EnvironmentTest.test_niceness) ... ok test_purge_duplicate_comments (pypet.tests.integration.environment_test.EnvironmentTest.test_purge_duplicate_comments) ... MainProcess 2024-11-14 17:50:12,258 pypet.storageservice.HDF5StorageService ERROR Failed storing `Trajectory T__test_purge_duplicate_comments__19244_2024_11_14_17h50m12s (len:4): (config: ), (parameters: ), (derived_parameters: ), (results: ), (testleaf0: ), (testleaf1: ), ...` ok test_run (pypet.tests.integration.environment_test.EnvironmentTest.test_run) ... ok test_run_complex (pypet.tests.integration.environment_test.EnvironmentTest.test_run_complex) ... ok test_store_form_tuple (pypet.tests.integration.environment_test.EnvironmentTest.test_store_form_tuple) ... ok test_store_single_group (pypet.tests.integration.environment_test.EnvironmentTest.test_store_single_group) ... MainProcess 2024-11-14 17:50:15,921 pypet.storageservice.HDF5StorageService ERROR Failed loading `ParameterGroup parameters: (Normal: ), (Numpy: ), (Sparse: ), (Numpy_2D: ), (Numpy_3D: ), (Tuples: ), ...` ok test_switch_ON_large_tables (pypet.tests.integration.environment_test.EnvironmentTest.test_switch_ON_large_tables) ... ok test_switch_off_all_tables (pypet.tests.integration.environment_test.EnvironmentTest.test_switch_off_all_tables) ... ok test_switch_on_all_comments (pypet.tests.integration.environment_test.EnvironmentTest.test_switch_on_all_comments) ... ok test_time_display_of_loading (pypet.tests.integration.environment_test.EnvironmentTest.test_time_display_of_loading) ... ok test_two_runs (pypet.tests.integration.environment_test.EnvironmentTest.test_two_runs) ... ok test_full_store (integration.environment_test.FullStorageTest.test_full_store) ... ok test_run (pypet.tests.integration.link_test.LinkEnvironmentTest.test_run) ... ok test_merge_with_linked_derived_parameter (integration.link_test.LinkMergeTest.test_merge_with_linked_derived_parameter) ... ok test_remerging (integration.link_test.LinkMergeTest.test_remerging) ... ok test_find_in_all_runs_with_links (unittests.link_test.LinkTrajectoryTests.test_find_in_all_runs_with_links) ... ok test_get_all_not_links (unittests.link_test.LinkTrajectoryTests.test_get_all_not_links) ... ok test_iteration_failure (unittests.link_test.LinkTrajectoryTests.test_iteration_failure) ... ok test_link_creation (unittests.link_test.LinkTrajectoryTests.test_link_creation) ... Failed adding `test` under `parameters`. Failed adding `circle1` under ``. ok test_link_deletion (unittests.link_test.LinkTrajectoryTests.test_link_deletion) ... ok test_link_of_link (unittests.link_test.LinkTrajectoryTests.test_link_of_link) ... ok test_link_removal (unittests.link_test.LinkTrajectoryTests.test_link_removal) ... ok test_links_according_to_run (unittests.link_test.LinkTrajectoryTests.test_links_according_to_run) ... ok test_not_getting_links (unittests.link_test.LinkTrajectoryTests.test_not_getting_links) ... ok test_storage_and_loading (unittests.link_test.LinkTrajectoryTests.test_storage_and_loading) ... ok test_pickling (unittests.pypetlogging_test.LoggingManagerTest.test_pickling) ... ok test_disable (pypet.tests.integration.logging_test.LoggingTest.test_disable) ... WARNING_Test! ERROR_Test! CRITICAL_Test! STORE_Test! in parameter WARNING_Test! ERROR_Test! CRITICAL_Test! STORE_Test! in parameter WARNING_Test! ERROR_Test! CRITICAL_Test! STORE_Test! in parameter WARNING_Test! ERROR_Test! CRITICAL_Test! STORE_Test! in parameter WARNING_Test! ERROR_Test! CRITICAL_Test! STORE_Test! in parameter WARNING_Test! ERROR_Test! CRITICAL_Test! STORE_Test! in parameter WARNING_Test! ERROR_Test! CRITICAL_Test! STORE_Test! in parameter ok test_file_renaming (pypet.tests.integration.logging_test.LoggingTest.test_file_renaming) ... ok test_logfile_creation_normal (pypet.tests.integration.logging_test.LoggingTest.test_logfile_creation_normal) ... ok test_logfile_creation_with_errors (pypet.tests.integration.logging_test.LoggingTest.test_logfile_creation_with_errors) ... MainProcess 2024-11-14 17:50:28,580 pypet.ERROR ERROR ERROR_Test! MainProcess 2024-11-14 17:50:28,580 pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess 2024-11-14 17:50:28,582 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-11-14 17:50:28,585 pypet.ERROR ERROR ERROR_Test! MainProcess 2024-11-14 17:50:28,585 pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess 2024-11-14 17:50:28,586 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-11-14 17:50:28,589 pypet.ERROR ERROR ERROR_Test! MainProcess 2024-11-14 17:50:28,589 pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess 2024-11-14 17:50:28,590 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-11-14 17:50:28,593 pypet.ERROR ERROR ERROR_Test! MainProcess 2024-11-14 17:50:28,593 pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess 2024-11-14 17:50:28,594 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-11-14 17:50:28,597 pypet.ERROR ERROR ERROR_Test! MainProcess 2024-11-14 17:50:28,597 pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess 2024-11-14 17:50:28,598 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-11-14 17:50:28,601 pypet.ERROR ERROR ERROR_Test! MainProcess 2024-11-14 17:50:28,601 pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess 2024-11-14 17:50:28,602 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-11-14 17:50:28,605 pypet.ERROR ERROR ERROR_Test! MainProcess 2024-11-14 17:50:28,605 pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess 2024-11-14 17:50:28,606 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter ok test_logfile_old_way_creation_with_errors (pypet.tests.integration.logging_test.LoggingTest.test_logfile_old_way_creation_with_errors) ... MainProcess pypet.ERROR ERROR ERROR_Test! MainProcess pypet.ERROR ERROR ERROR_Test! MainProcess pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess pypet.ERROR ERROR ERROR_Test! MainProcess pypet.ERROR ERROR ERROR_Test! MainProcess pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess pypet.ERROR ERROR ERROR_Test! MainProcess pypet.ERROR ERROR ERROR_Test! MainProcess pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess pypet.ERROR ERROR ERROR_Test! MainProcess pypet.ERROR ERROR ERROR_Test! MainProcess pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess pypet.ERROR ERROR ERROR_Test! MainProcess pypet.ERROR ERROR ERROR_Test! MainProcess pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess pypet.ERROR ERROR ERROR_Test! MainProcess pypet.ERROR ERROR ERROR_Test! MainProcess pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess pypet.ERROR ERROR ERROR_Test! MainProcess pypet.ERROR ERROR ERROR_Test! MainProcess pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter ok test_logfile_old_way_disabling_mp_log (pypet.tests.integration.logging_test.LoggingTest.test_logfile_old_way_disabling_mp_log) ... MainProcess pypet.ERROR ERROR ERROR_Test! MainProcess pypet.ERROR ERROR ERROR_Test! MainProcess pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess pypet.ERROR ERROR ERROR_Test! MainProcess pypet.ERROR ERROR ERROR_Test! MainProcess pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess pypet.ERROR ERROR ERROR_Test! MainProcess pypet.ERROR ERROR ERROR_Test! MainProcess pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess pypet.ERROR ERROR ERROR_Test! MainProcess pypet.ERROR ERROR ERROR_Test! MainProcess pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess pypet.ERROR ERROR ERROR_Test! MainProcess pypet.ERROR ERROR ERROR_Test! MainProcess pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess pypet.ERROR ERROR ERROR_Test! MainProcess pypet.ERROR ERROR ERROR_Test! MainProcess pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess pypet.ERROR ERROR ERROR_Test! MainProcess pypet.ERROR ERROR ERROR_Test! MainProcess pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter ok test_logging_show_progress (pypet.tests.integration.logging_test.LoggingTest.test_logging_show_progress) ... MainProcess 2024-11-14 17:50:29,110 progress ERROR PROGRESS: Finished 0/7 runs [ ] 0.0% MainProcess 2024-11-14 17:50:29,110 pypet.ERROR ERROR ERROR_Test! MainProcess 2024-11-14 17:50:29,110 pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess 2024-11-14 17:50:29,111 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-11-14 17:50:29,114 progress ERROR PROGRESS: Finished 1/7 runs [== ] 14.3%, remaining: 0:00:00 MainProcess 2024-11-14 17:50:29,114 pypet.ERROR ERROR ERROR_Test! MainProcess 2024-11-14 17:50:29,114 pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess 2024-11-14 17:50:29,115 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-11-14 17:50:29,118 progress ERROR PROGRESS: Finished 2/7 runs [===== ] 28.6%, remaining: 0:00:00 MainProcess 2024-11-14 17:50:29,118 pypet.ERROR ERROR ERROR_Test! MainProcess 2024-11-14 17:50:29,118 pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess 2024-11-14 17:50:29,120 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-11-14 17:50:29,122 progress ERROR PROGRESS: Finished 3/7 runs [======== ] 42.9%, remaining: 0:00:00 MainProcess 2024-11-14 17:50:29,122 pypet.ERROR ERROR ERROR_Test! MainProcess 2024-11-14 17:50:29,122 pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess 2024-11-14 17:50:29,124 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-11-14 17:50:29,126 progress ERROR PROGRESS: Finished 4/7 runs [=========== ] 57.1%, remaining: 0:00:00 MainProcess 2024-11-14 17:50:29,126 pypet.ERROR ERROR ERROR_Test! MainProcess 2024-11-14 17:50:29,126 pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess 2024-11-14 17:50:29,128 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-11-14 17:50:29,130 progress ERROR PROGRESS: Finished 5/7 runs [============== ] 71.4%, remaining: 0:00:00 MainProcess 2024-11-14 17:50:29,130 pypet.ERROR ERROR ERROR_Test! MainProcess 2024-11-14 17:50:29,130 pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess 2024-11-14 17:50:29,132 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-11-14 17:50:29,134 progress ERROR PROGRESS: Finished 6/7 runs [================= ] 85.7%, remaining: 0:00:00 MainProcess 2024-11-14 17:50:29,134 pypet.ERROR ERROR ERROR_Test! MainProcess 2024-11-14 17:50:29,135 pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess 2024-11-14 17:50:29,136 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-11-14 17:50:29,138 progress ERROR PROGRESS: Finished 7/7 runs [====================]100.0% ok test_logging_show_progress_print (pypet.tests.integration.logging_test.LoggingTest.test_logging_show_progress_print) ... MainProcess 2024-11-14 17:50:29,279 prostdout CRITICAL Established redirection of `stdout`. MainProcess 2024-11-14 17:50:29,289 prostdout CRITICAL PROGRESS: Finished 0/7 runs [ ] 0.0% MainProcess 2024-11-14 17:50:29,290 pypet.ERROR ERROR ERROR_Test! MainProcess 2024-11-14 17:50:29,290 pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess 2024-11-14 17:50:29,291 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-11-14 17:50:29,294 prostdout CRITICAL PROGRESS: Finished 1/7 runs [== ] 14.3%, remaining: 0:00:00 MainProcess 2024-11-14 17:50:29,294 pypet.ERROR ERROR ERROR_Test! MainProcess 2024-11-14 17:50:29,294 pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess 2024-11-14 17:50:29,295 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-11-14 17:50:29,298 prostdout CRITICAL PROGRESS: Finished 2/7 runs [===== ] 28.6%, remaining: 0:00:00 MainProcess 2024-11-14 17:50:29,298 pypet.ERROR ERROR ERROR_Test! MainProcess 2024-11-14 17:50:29,298 pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess 2024-11-14 17:50:29,300 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-11-14 17:50:29,302 prostdout CRITICAL PROGRESS: Finished 3/7 runs [======== ] 42.9%, remaining: 0:00:00 MainProcess 2024-11-14 17:50:29,302 pypet.ERROR ERROR ERROR_Test! MainProcess 2024-11-14 17:50:29,302 pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess 2024-11-14 17:50:29,304 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-11-14 17:50:29,306 prostdout CRITICAL PROGRESS: Finished 4/7 runs [=========== ] 57.1%, remaining: 0:00:00 MainProcess 2024-11-14 17:50:29,306 pypet.ERROR ERROR ERROR_Test! MainProcess 2024-11-14 17:50:29,307 pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess 2024-11-14 17:50:29,308 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-11-14 17:50:29,310 prostdout CRITICAL PROGRESS: Finished 5/7 runs [============== ] 71.4%, remaining: 0:00:00 MainProcess 2024-11-14 17:50:29,311 pypet.ERROR ERROR ERROR_Test! MainProcess 2024-11-14 17:50:29,311 pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess 2024-11-14 17:50:29,312 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-11-14 17:50:29,315 prostdout CRITICAL PROGRESS: Finished 6/7 runs [================= ] 85.7%, remaining: 0:00:00 MainProcess 2024-11-14 17:50:29,315 pypet.ERROR ERROR ERROR_Test! MainProcess 2024-11-14 17:50:29,315 pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess 2024-11-14 17:50:29,316 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-11-14 17:50:29,319 prostdout CRITICAL PROGRESS: Finished 7/7 runs [====================]100.0% ok test_logging_stdout (pypet.tests.integration.logging_test.LoggingTest.test_logging_stdout) ... MainProcess 2024-11-14 17:50:29,464 STDOUT CRITICAL Established redirection of `stdout`. MainProcess 2024-11-14 17:50:29,478 pypet.only.ERROR ERROR Test of Error Logging during run! MainProcess 2024-11-14 17:50:29,480 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-11-14 17:50:29,804 STDOUT CRITICAL sTdOuTLoGGinG ok test_throw_error_when_specifying_config_and_old_method (pypet.tests.integration.logging_test.LoggingTest.test_throw_error_when_specifying_config_and_old_method) ... ok test_init_method (unittests.utils_test.MatchingkwargsTest.test_init_method) ... ok test_kwargs (unittests.utils_test.MatchingkwargsTest.test_kwargs) ... ok test_more_than_def (unittests.utils_test.MatchingkwargsTest.test_more_than_def) ... ok test_more_than_def_args (unittests.utils_test.MatchingkwargsTest.test_more_than_def_args) ... ok test_no_match_no_init (unittests.utils_test.MatchingkwargsTest.test_no_match_no_init) ... ok test_basic_within_same_file_and_skipping_duplicates_which_leads_to_one_reamianing (integration.merge_test.MergeTest.test_basic_within_same_file_and_skipping_duplicates_which_leads_to_one_reamianing) ... ok test_basic_within_same_file_and_skipping_duplicates_which_will_be_all (integration.merge_test.MergeTest.test_basic_within_same_file_and_skipping_duplicates_which_will_be_all) ... ok test_basic_within_separate_file_and_skipping_duplicates_which_leads_to_one_reamianing (integration.merge_test.MergeTest.test_basic_within_separate_file_and_skipping_duplicates_which_leads_to_one_reamianing) ... ok test_merge_basic_with_separate_files_only_adding_more_trials (integration.merge_test.MergeTest.test_merge_basic_with_separate_files_only_adding_more_trials) ... ok test_merge_basic_with_separate_files_only_adding_more_trials_slow_merge (integration.merge_test.MergeTest.test_merge_basic_with_separate_files_only_adding_more_trials_slow_merge) ... ok test_merge_basic_within_same_file_only_adding_more_trials_copy_nodes (integration.merge_test.MergeTest.test_merge_basic_within_same_file_only_adding_more_trials_copy_nodes) ... ok test_merge_basic_within_same_file_only_adding_more_trials_copy_nodes_test_backup (integration.merge_test.MergeTest.test_merge_basic_within_same_file_only_adding_more_trials_copy_nodes_test_backup) ... ok test_merge_basic_within_same_file_only_adding_more_trials_delete_other_trajectory (integration.merge_test.MergeTest.test_merge_basic_within_same_file_only_adding_more_trials_delete_other_trajectory) ... ok test_merge_basic_within_same_file_only_adding_more_trials_move_nodes (integration.merge_test.MergeTest.test_merge_basic_within_same_file_only_adding_more_trials_move_nodes) ... ok test_merging_errors_if_trajs_do_not_match (integration.merge_test.MergeTest.test_merging_errors_if_trajs_do_not_match) ... ok test_merging_trajectories_in_different_subspace (integration.merge_test.MergeTest.test_merging_trajectories_in_different_subspace) ... ok test_NOT_purge_duplicate_comments (integration.environment_multiproc_test.MultiprocFrozenPoolLocalTest.test_NOT_purge_duplicate_comments) ... Disabled redirection of `stdout`. Disabled redirection of `stdout`. Disabled redirection of `stdout`. Disabled redirection of `stdout`. ok test_a_large_run (integration.environment_multiproc_test.MultiprocFrozenPoolLocalTest.test_a_large_run) ... ok test_errors (integration.environment_multiproc_test.MultiprocFrozenPoolLocalTest.test_errors) ... ok test_expand (integration.environment_multiproc_test.MultiprocFrozenPoolLocalTest.test_expand) ... ok test_expand_after_reload (integration.environment_multiproc_test.MultiprocFrozenPoolLocalTest.test_expand_after_reload) ... ok test_file_overwriting (integration.environment_multiproc_test.MultiprocFrozenPoolLocalTest.test_file_overwriting) ... ok test_just_one_run (integration.environment_multiproc_test.MultiprocFrozenPoolLocalTest.test_just_one_run) ... ok test_niceness (integration.environment_multiproc_test.MultiprocFrozenPoolLocalTest.test_niceness) ... ok test_purge_duplicate_comments (integration.environment_multiproc_test.MultiprocFrozenPoolLocalTest.test_purge_duplicate_comments) ... MainProcess 2024-11-14 17:51:38,581 pypet.storageservice.HDF5StorageService ERROR Failed storing `Trajectory T__test_purge_duplicate_comments__87843_2024_11_14_17h51m38s (len:4): (config: ), (parameters: ), (derived_parameters: ), (results: ), (testleaf0: ), (testleaf1: ), ...` ok test_run (integration.environment_multiproc_test.MultiprocFrozenPoolLocalTest.test_run) ... ok test_run_complex (integration.environment_multiproc_test.MultiprocFrozenPoolLocalTest.test_run_complex) ... ok test_store_form_tuple (integration.environment_multiproc_test.MultiprocFrozenPoolLocalTest.test_store_form_tuple) ... ok test_store_single_group (integration.environment_multiproc_test.MultiprocFrozenPoolLocalTest.test_store_single_group) ... MainProcess 2024-11-14 17:51:43,147 pypet.storageservice.HDF5StorageService ERROR Failed loading `ParameterGroup parameters: (Normal: ), (Numpy: ), (Sparse: ), (Numpy_2D: ), (Numpy_3D: ), (Tuples: ), ...` ok test_switch_ON_large_tables (integration.environment_multiproc_test.MultiprocFrozenPoolLocalTest.test_switch_ON_large_tables) ... ok test_switch_off_all_tables (integration.environment_multiproc_test.MultiprocFrozenPoolLocalTest.test_switch_off_all_tables) ... ok test_switch_on_all_comments (integration.environment_multiproc_test.MultiprocFrozenPoolLocalTest.test_switch_on_all_comments) ... ok test_time_display_of_loading (integration.environment_multiproc_test.MultiprocFrozenPoolLocalTest.test_time_display_of_loading) ... ok test_two_runs (integration.environment_multiproc_test.MultiprocFrozenPoolLocalTest.test_two_runs) ... ok test_NOT_purge_duplicate_comments (integration.environment_multiproc_test.MultiprocFrozenPoolPipeTest.test_NOT_purge_duplicate_comments) ... ok test_a_large_run (integration.environment_multiproc_test.MultiprocFrozenPoolPipeTest.test_a_large_run) ... ok test_errors (integration.environment_multiproc_test.MultiprocFrozenPoolPipeTest.test_errors) ... ok test_expand (integration.environment_multiproc_test.MultiprocFrozenPoolPipeTest.test_expand) ... ok test_expand_after_reload (integration.environment_multiproc_test.MultiprocFrozenPoolPipeTest.test_expand_after_reload) ... ok test_file_overwriting (integration.environment_multiproc_test.MultiprocFrozenPoolPipeTest.test_file_overwriting) ... ok test_just_one_run (integration.environment_multiproc_test.MultiprocFrozenPoolPipeTest.test_just_one_run) ... ok test_niceness (integration.environment_multiproc_test.MultiprocFrozenPoolPipeTest.test_niceness) ... ok test_purge_duplicate_comments (integration.environment_multiproc_test.MultiprocFrozenPoolPipeTest.test_purge_duplicate_comments) ... MainProcess 2024-11-14 17:52:02,023 pypet.storageservice.HDF5StorageService ERROR Failed storing `Trajectory T__test_purge_duplicate_comments__41192_2024_11_14_17h52m02s (len:4): (config: ), (parameters: ), (derived_parameters: ), (results: ), (testleaf0: ), (testleaf1: ), ...` ok test_run (integration.environment_multiproc_test.MultiprocFrozenPoolPipeTest.test_run) ... ok test_run_complex (integration.environment_multiproc_test.MultiprocFrozenPoolPipeTest.test_run_complex) ... ok test_store_form_tuple (integration.environment_multiproc_test.MultiprocFrozenPoolPipeTest.test_store_form_tuple) ... ok test_store_single_group (integration.environment_multiproc_test.MultiprocFrozenPoolPipeTest.test_store_single_group) ... MainProcess 2024-11-14 17:52:06,292 pypet.storageservice.HDF5StorageService ERROR Failed loading `ParameterGroup parameters: (Normal: ), (Numpy: ), (Sparse: ), (Numpy_2D: ), (Numpy_3D: ), (Tuples: ), ...` ok test_switch_ON_large_tables (integration.environment_multiproc_test.MultiprocFrozenPoolPipeTest.test_switch_ON_large_tables) ... ok test_switch_off_all_tables (integration.environment_multiproc_test.MultiprocFrozenPoolPipeTest.test_switch_off_all_tables) ... ok test_switch_on_all_comments (integration.environment_multiproc_test.MultiprocFrozenPoolPipeTest.test_switch_on_all_comments) ... ok test_time_display_of_loading (integration.environment_multiproc_test.MultiprocFrozenPoolPipeTest.test_time_display_of_loading) ... ok test_two_runs (integration.environment_multiproc_test.MultiprocFrozenPoolPipeTest.test_two_runs) ... ok test_NOT_purge_duplicate_comments (integration.environment_multiproc_test.MultiprocFrozenPoolQueueTest.test_NOT_purge_duplicate_comments) ... ok test_a_large_run (integration.environment_multiproc_test.MultiprocFrozenPoolQueueTest.test_a_large_run) ... ok test_errors (integration.environment_multiproc_test.MultiprocFrozenPoolQueueTest.test_errors) ... ok test_expand (integration.environment_multiproc_test.MultiprocFrozenPoolQueueTest.test_expand) ... ok test_expand_after_reload (integration.environment_multiproc_test.MultiprocFrozenPoolQueueTest.test_expand_after_reload) ... ok test_file_overwriting (integration.environment_multiproc_test.MultiprocFrozenPoolQueueTest.test_file_overwriting) ... ok test_just_one_run (integration.environment_multiproc_test.MultiprocFrozenPoolQueueTest.test_just_one_run) ... ok test_niceness (integration.environment_multiproc_test.MultiprocFrozenPoolQueueTest.test_niceness) ... ok test_purge_duplicate_comments (integration.environment_multiproc_test.MultiprocFrozenPoolQueueTest.test_purge_duplicate_comments) ... MainProcess 2024-11-14 17:52:25,437 pypet.storageservice.HDF5StorageService ERROR Failed storing `Trajectory T__test_purge_duplicate_comments__17093_2024_11_14_17h52m25s (len:4): (config: ), (parameters: ), (derived_parameters: ), (results: ), (testleaf0: ), (testleaf1: ), ...` ok test_run (integration.environment_multiproc_test.MultiprocFrozenPoolQueueTest.test_run) ... ok test_run_complex (integration.environment_multiproc_test.MultiprocFrozenPoolQueueTest.test_run_complex) ... ok test_store_form_tuple (integration.environment_multiproc_test.MultiprocFrozenPoolQueueTest.test_store_form_tuple) ... ok test_store_single_group (integration.environment_multiproc_test.MultiprocFrozenPoolQueueTest.test_store_single_group) ... MainProcess 2024-11-14 17:52:30,626 pypet.storageservice.HDF5StorageService ERROR Failed loading `ParameterGroup parameters: (Normal: ), (Numpy: ), (Sparse: ), (Numpy_2D: ), (Numpy_3D: ), (Tuples: ), ...` ok test_switch_ON_large_tables (integration.environment_multiproc_test.MultiprocFrozenPoolQueueTest.test_switch_ON_large_tables) ... ok test_switch_off_all_tables (integration.environment_multiproc_test.MultiprocFrozenPoolQueueTest.test_switch_off_all_tables) ... ok test_switch_on_all_comments (integration.environment_multiproc_test.MultiprocFrozenPoolQueueTest.test_switch_on_all_comments) ... ok test_time_display_of_loading (integration.environment_multiproc_test.MultiprocFrozenPoolQueueTest.test_time_display_of_loading) ... ok test_two_runs (integration.environment_multiproc_test.MultiprocFrozenPoolQueueTest.test_two_runs) ... ok test_expand (integration.environment_multiproc_test.MultiprocFrozenPoolSortLockTest.test_expand) ... ok test_expand_after_reload (integration.environment_multiproc_test.MultiprocFrozenPoolSortLockTest.test_expand_after_reload) ... ok test_f_iter_runs (integration.environment_multiproc_test.MultiprocFrozenPoolSortLockTest.test_f_iter_runs) ... ok test_f_iter_runs_auto_load (integration.environment_multiproc_test.MultiprocFrozenPoolSortLockTest.test_f_iter_runs_auto_load) ... ok test_graceful_exit (integration.environment_multiproc_test.MultiprocFrozenPoolSortLockTest.test_graceful_exit) ... You killed the process(es) via `SIGINT` (`CTRL+C`). I am trying to exit gracefully. Using `SIGINT` (`CTRL+C`) again will cause an immediate exit. You killed the process(es) via `SIGINT` (`CTRL+C`). I am trying to exit gracefully. Using `SIGINT` (`CTRL+C`) again will cause an immediate exit. You killed the process(es) via `SIGINT` (`CTRL+C`). I am trying to exit gracefully. Using `SIGINT` (`CTRL+C`) again will cause an immediate exit. You killed the process(es) via `SIGINT` (`CTRL+C`). I am trying to exit gracefully. Using `SIGINT` (`CTRL+C`) again will cause an immediate exit. MainProcess 2024-11-14 17:52:45,157 pypet.environment.Environment ERROR Following runs of trajectory `T__test_graceful_exit__56998` did NOT complete: `run_00000008, run_00000009, run_00000010, run_00000011, run_00000012, run_00000013, run_00000014, run_00000015, run_00000016, run_00000017, run_00000018, run_00000019, run_00000020, run_00000021, run_00000022, run_00000023, run_00000024, run_00000025, run_00000026, run_00000027, run_00000028, run_00000029, run_00000030, run_00000031, run_00000032, run_00000033, run_00000034, run_00000035, run_00000036, run_00000037, run_00000038, run_00000039, run_00000040, run_00000041, run_00000042, run_00000043, run_00000044, run_00000045, run_00000046, run_00000047, run_00000048` ok test_if_results_are_sorted_correctly (integration.environment_multiproc_test.MultiprocFrozenPoolSortLockTest.test_if_results_are_sorted_correctly) ... ok test_if_results_are_sorted_correctly_manual_runs (integration.environment_multiproc_test.MultiprocFrozenPoolSortLockTest.test_if_results_are_sorted_correctly_manual_runs) ... ok test_if_results_are_sorted_correctly_using_map (integration.environment_multiproc_test.MultiprocFrozenPoolSortLockTest.test_if_results_are_sorted_correctly_using_map) ... ok test_expand (integration.environment_multiproc_test.MultiprocFrozenPoolSortPipeTest.test_expand) ... ok test_expand_after_reload (integration.environment_multiproc_test.MultiprocFrozenPoolSortPipeTest.test_expand_after_reload) ... ok test_f_iter_runs (integration.environment_multiproc_test.MultiprocFrozenPoolSortPipeTest.test_f_iter_runs) ... ok test_f_iter_runs_auto_load (integration.environment_multiproc_test.MultiprocFrozenPoolSortPipeTest.test_f_iter_runs_auto_load) ... ok test_graceful_exit (integration.environment_multiproc_test.MultiprocFrozenPoolSortPipeTest.test_graceful_exit) ... You killed the process(es) via `SIGINT` (`CTRL+C`). I am trying to exit gracefully. Using `SIGINT` (`CTRL+C`) again will cause an immediate exit. You killed the process(es) via `SIGINT` (`CTRL+C`). I am trying to exit gracefully. Using `SIGINT` (`CTRL+C`) again will cause an immediate exit. You killed the process(es) via `SIGINT` (`CTRL+C`). I am trying to exit gracefully. Using `SIGINT` (`CTRL+C`) again will cause an immediate exit. You killed the process(es) via `SIGINT` (`CTRL+C`). I am trying to exit gracefully. Using `SIGINT` (`CTRL+C`) again will cause an immediate exit. MainProcess 2024-11-14 17:52:49,499 pypet.environment.Environment ERROR Following runs of trajectory `T__test_graceful_exit__20885` did NOT complete: `run_00000008, run_00000009, run_00000010, run_00000011, run_00000012, run_00000013, run_00000014, run_00000015, run_00000016, run_00000017, run_00000018, run_00000019, run_00000020, run_00000021, run_00000022, run_00000023, run_00000024, run_00000025, run_00000026, run_00000027, run_00000028, run_00000029, run_00000030, run_00000031, run_00000032, run_00000033, run_00000034, run_00000035, run_00000036, run_00000037, run_00000038, run_00000039, run_00000040, run_00000041, run_00000042, run_00000043, run_00000044, run_00000045, run_00000046, run_00000047, run_00000048` ok test_if_results_are_sorted_correctly (integration.environment_multiproc_test.MultiprocFrozenPoolSortPipeTest.test_if_results_are_sorted_correctly) ... ok test_if_results_are_sorted_correctly_manual_runs (integration.environment_multiproc_test.MultiprocFrozenPoolSortPipeTest.test_if_results_are_sorted_correctly_manual_runs) ... ok test_if_results_are_sorted_correctly_using_map (integration.environment_multiproc_test.MultiprocFrozenPoolSortPipeTest.test_if_results_are_sorted_correctly_using_map) ... ok test_expand (integration.environment_multiproc_test.MultiprocFrozenPoolSortQueueTest.test_expand) ... ok test_expand_after_reload (integration.environment_multiproc_test.MultiprocFrozenPoolSortQueueTest.test_expand_after_reload) ... ok test_f_iter_runs (integration.environment_multiproc_test.MultiprocFrozenPoolSortQueueTest.test_f_iter_runs) ... ok test_f_iter_runs_auto_load (integration.environment_multiproc_test.MultiprocFrozenPoolSortQueueTest.test_f_iter_runs_auto_load) ... ok test_graceful_exit (integration.environment_multiproc_test.MultiprocFrozenPoolSortQueueTest.test_graceful_exit) ... You killed the process(es) via `SIGINT` (`CTRL+C`). I am trying to exit gracefully. Using `SIGINT` (`CTRL+C`) again will cause an immediate exit. You killed the process(es) via `SIGINT` (`CTRL+C`). I am trying to exit gracefully. Using `SIGINT` (`CTRL+C`) again will cause an immediate exit. MainProcess 2024-11-14 17:52:53,964 pypet.environment.Environment ERROR Following runs of trajectory `T__test_graceful_exit__52389` did NOT complete: `run_00000006, run_00000007, run_00000008, run_00000009, run_00000010, run_00000011, run_00000012, run_00000013, run_00000014, run_00000015, run_00000016, run_00000017, run_00000018, run_00000019, run_00000020, run_00000021, run_00000022, run_00000023, run_00000024, run_00000025, run_00000026, run_00000027, run_00000028, run_00000029, run_00000030, run_00000031, run_00000032, run_00000033, run_00000034, run_00000035, run_00000036, run_00000037, run_00000038, run_00000039, run_00000040, run_00000041, run_00000042, run_00000043, run_00000044, run_00000045, run_00000046, run_00000047, run_00000048` ok test_if_full_copy_is_old_value (integration.environment_multiproc_test.MultiprocFrozenPoolSortQueueTest.test_if_full_copy_is_old_value) ... ok test_if_results_are_sorted_correctly (integration.environment_multiproc_test.MultiprocFrozenPoolSortQueueTest.test_if_results_are_sorted_correctly) ... ok test_if_results_are_sorted_correctly_manual_runs (integration.environment_multiproc_test.MultiprocFrozenPoolSortQueueTest.test_if_results_are_sorted_correctly_manual_runs) ... ok test_if_results_are_sorted_correctly_using_map (integration.environment_multiproc_test.MultiprocFrozenPoolSortQueueTest.test_if_results_are_sorted_correctly_using_map) ... ok test_NOT_purge_duplicate_comments (integration.environment_scoop_test.MultiprocFrozenSCOOPLocalTest.test_NOT_purge_duplicate_comments) ... skipped 'Only makes sense if scoop is installed' test_a_large_run (integration.environment_scoop_test.MultiprocFrozenSCOOPLocalTest.test_a_large_run) ... skipped 'Only makes sense if scoop is installed' test_errors (integration.environment_scoop_test.MultiprocFrozenSCOOPLocalTest.test_errors) ... skipped 'Only makes sense if scoop is installed' test_expand (integration.environment_scoop_test.MultiprocFrozenSCOOPLocalTest.test_expand) ... skipped 'Only makes sense if scoop is installed' test_expand_after_reload (integration.environment_scoop_test.MultiprocFrozenSCOOPLocalTest.test_expand_after_reload) ... skipped 'Only makes sense if scoop is installed' test_file_overwriting (integration.environment_scoop_test.MultiprocFrozenSCOOPLocalTest.test_file_overwriting) ... skipped 'Only makes sense if scoop is installed' test_just_one_run (integration.environment_scoop_test.MultiprocFrozenSCOOPLocalTest.test_just_one_run) ... skipped 'Only makes sense if scoop is installed' test_niceness (integration.environment_scoop_test.MultiprocFrozenSCOOPLocalTest.test_niceness) ... skipped 'Only makes sense if scoop is installed' test_purge_duplicate_comments (integration.environment_scoop_test.MultiprocFrozenSCOOPLocalTest.test_purge_duplicate_comments) ... skipped 'Only makes sense if scoop is installed' test_run (integration.environment_scoop_test.MultiprocFrozenSCOOPLocalTest.test_run) ... skipped 'Only makes sense if scoop is installed' test_run_complex (integration.environment_scoop_test.MultiprocFrozenSCOOPLocalTest.test_run_complex) ... skipped 'Only makes sense if scoop is installed' test_store_form_tuple (integration.environment_scoop_test.MultiprocFrozenSCOOPLocalTest.test_store_form_tuple) ... skipped 'Only makes sense if scoop is installed' test_store_single_group (integration.environment_scoop_test.MultiprocFrozenSCOOPLocalTest.test_store_single_group) ... skipped 'Only makes sense if scoop is installed' test_switch_ON_large_tables (integration.environment_scoop_test.MultiprocFrozenSCOOPLocalTest.test_switch_ON_large_tables) ... skipped 'Only makes sense if scoop is installed' test_switch_off_all_tables (integration.environment_scoop_test.MultiprocFrozenSCOOPLocalTest.test_switch_off_all_tables) ... skipped 'Only makes sense if scoop is installed' test_switch_on_all_comments (integration.environment_scoop_test.MultiprocFrozenSCOOPLocalTest.test_switch_on_all_comments) ... skipped 'Only makes sense if scoop is installed' test_time_display_of_loading (integration.environment_scoop_test.MultiprocFrozenSCOOPLocalTest.test_time_display_of_loading) ... skipped 'Only makes sense if scoop is installed' test_two_runs (integration.environment_scoop_test.MultiprocFrozenSCOOPLocalTest.test_two_runs) ... skipped 'Only makes sense if scoop is installed' test_expand (integration.environment_scoop_test.MultiprocFrozenSCOOPSortNetlockTest.test_expand) ... skipped 'Only makes sense if scoop is installed' test_expand_after_reload (integration.environment_scoop_test.MultiprocFrozenSCOOPSortNetlockTest.test_expand_after_reload) ... skipped 'Only makes sense if scoop is installed' test_f_iter_runs (integration.environment_scoop_test.MultiprocFrozenSCOOPSortNetlockTest.test_f_iter_runs) ... skipped 'Only makes sense if scoop is installed' test_f_iter_runs_auto_load (integration.environment_scoop_test.MultiprocFrozenSCOOPSortNetlockTest.test_f_iter_runs_auto_load) ... skipped 'Only makes sense if scoop is installed' test_graceful_exit (integration.environment_scoop_test.MultiprocFrozenSCOOPSortNetlockTest.test_graceful_exit) ... skipped 'Only makes sense if scoop is installed' test_if_results_are_sorted_correctly (integration.environment_scoop_test.MultiprocFrozenSCOOPSortNetlockTest.test_if_results_are_sorted_correctly) ... skipped 'Only makes sense if scoop is installed' test_if_results_are_sorted_correctly_manual_runs (integration.environment_scoop_test.MultiprocFrozenSCOOPSortNetlockTest.test_if_results_are_sorted_correctly_manual_runs) ... skipped 'Only makes sense if scoop is installed' test_if_results_are_sorted_correctly_using_map (integration.environment_scoop_test.MultiprocFrozenSCOOPSortNetlockTest.test_if_results_are_sorted_correctly_using_map) ... skipped 'Only makes sense if scoop is installed' test_expand (integration.environment_scoop_test.MultiprocFrozenSCOOPSortNetqueueTest.test_expand) ... skipped 'Only makes sense if scoop is installed' test_expand_after_reload (integration.environment_scoop_test.MultiprocFrozenSCOOPSortNetqueueTest.test_expand_after_reload) ... skipped 'Only makes sense if scoop is installed' test_f_iter_runs (integration.environment_scoop_test.MultiprocFrozenSCOOPSortNetqueueTest.test_f_iter_runs) ... skipped 'Only makes sense if scoop is installed' test_f_iter_runs_auto_load (integration.environment_scoop_test.MultiprocFrozenSCOOPSortNetqueueTest.test_f_iter_runs_auto_load) ... skipped 'Only makes sense if scoop is installed' test_graceful_exit (integration.environment_scoop_test.MultiprocFrozenSCOOPSortNetqueueTest.test_graceful_exit) ... skipped 'Only makes sense if scoop is installed' test_if_results_are_sorted_correctly (integration.environment_scoop_test.MultiprocFrozenSCOOPSortNetqueueTest.test_if_results_are_sorted_correctly) ... skipped 'Only makes sense if scoop is installed' test_if_results_are_sorted_correctly_manual_runs (integration.environment_scoop_test.MultiprocFrozenSCOOPSortNetqueueTest.test_if_results_are_sorted_correctly_manual_runs) ... skipped 'Only makes sense if scoop is installed' test_if_results_are_sorted_correctly_using_map (integration.environment_scoop_test.MultiprocFrozenSCOOPSortNetqueueTest.test_if_results_are_sorted_correctly_using_map) ... skipped 'Only makes sense if scoop is installed' test_run (integration.link_multiproc_test.MultiprocLinkLocalTest.test_run) ... ok test_run (integration.link_multiproc_test.MultiprocLinkLockTest.test_run) ... Disabled redirection of `stdout`. ok test_run (integration.link_multiproc_test.MultiprocLinkNoPoolLockTest.test_run) ... ok test_run (integration.link_multiproc_test.MultiprocLinkNoPoolQueueTest.test_run) ... ok test_run (integration.link_multiproc_test.MultiprocLinkQueueTest.test_run) ... ok test_disable (integration.logging_multiproc_test.MultiprocNoPoolLockLoggingTest.test_disable) ... Disabled redirection of `stdout`. WARNING_Test! ERROR_Test! CRITICAL_Test! STORE_Test! in parameter WARNING_Test! ERROR_Test! CRITICAL_Test! WARNING_Test! ERROR_Test! CRITICAL_Test! WARNING_Test! ERROR_Test! CRITICAL_Test! STORE_Test! in parameter WARNING_Test! ERROR_Test! CRITICAL_Test! STORE_Test! in parameter WARNING_Test! ERROR_Test! CRITICAL_Test! STORE_Test! in parameter WARNING_Test! ERROR_Test! CRITICAL_Test! STORE_Test! in parameter STORE_Test! in parameter STORE_Test! in parameter ok test_file_renaming (integration.logging_multiproc_test.MultiprocNoPoolLockLoggingTest.test_file_renaming) ... ok test_logfile_creation_normal (integration.logging_multiproc_test.MultiprocNoPoolLockLoggingTest.test_logfile_creation_normal) ... ok test_logfile_creation_with_errors (integration.logging_multiproc_test.MultiprocNoPoolLockLoggingTest.test_logfile_creation_with_errors) ... Process-383 2024-11-14 17:52:58,718 pypet.ERROR ERROR ERROR_Test! Process-383 2024-11-14 17:52:58,718 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-384 2024-11-14 17:52:58,723 pypet.ERROR ERROR ERROR_Test! Process-383 2024-11-14 17:52:58,724 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter Process-384 2024-11-14 17:52:58,724 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-385 2024-11-14 17:52:58,728 pypet.ERROR ERROR ERROR_Test! Process-385 2024-11-14 17:52:58,728 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-386 2024-11-14 17:52:58,730 pypet.ERROR ERROR ERROR_Test! Process-386 2024-11-14 17:52:58,731 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-384 2024-11-14 17:52:58,736 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter Process-387 2024-11-14 17:52:58,746 pypet.ERROR ERROR ERROR_Test! Process-387 2024-11-14 17:52:58,746 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-385 2024-11-14 17:52:58,748 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter Process-388 2024-11-14 17:52:58,757 pypet.ERROR ERROR ERROR_Test! Process-388 2024-11-14 17:52:58,758 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-386 2024-11-14 17:52:58,761 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter Process-389 2024-11-14 17:52:58,771 pypet.ERROR ERROR ERROR_Test! Process-389 2024-11-14 17:52:58,771 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-387 2024-11-14 17:52:58,773 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter Process-388 2024-11-14 17:52:58,784 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter Process-389 2024-11-14 17:52:58,796 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-11-14 17:52:58,977 pypet.test ERROR ttt ok test_logfile_old_way_creation_with_errors (integration.logging_multiproc_test.MultiprocNoPoolLockLoggingTest.test_logfile_old_way_creation_with_errors) ... MainProcess pypet.test ERROR ttt MainProcess pypet.test ERROR ttt ok test_logfile_old_way_disabling_mp_log (integration.logging_multiproc_test.MultiprocNoPoolLockLoggingTest.test_logfile_old_way_disabling_mp_log) ... Process-397 pypet.ERROR ERROR ERROR_Test! Process-397 pypet.ERROR ERROR ERROR_Test! Process-397 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-397 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-397 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter Process-397 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter Process-398 pypet.ERROR ERROR ERROR_Test! Process-398 pypet.ERROR ERROR ERROR_Test! Process-398 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-398 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-399 pypet.ERROR ERROR ERROR_Test! Process-399 pypet.ERROR ERROR ERROR_Test! Process-399 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-399 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-400 pypet.ERROR ERROR ERROR_Test! Process-400 pypet.ERROR ERROR ERROR_Test! Process-400 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-400 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-398 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter Process-398 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter Process-401 pypet.ERROR ERROR ERROR_Test! Process-401 pypet.ERROR ERROR ERROR_Test! Process-401 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-401 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-399 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter Process-399 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter Process-402 pypet.ERROR ERROR ERROR_Test! Process-402 pypet.ERROR ERROR ERROR_Test! Process-402 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-402 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-400 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter Process-400 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter Process-403 pypet.ERROR ERROR ERROR_Test! Process-403 pypet.ERROR ERROR ERROR_Test! Process-403 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-403 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-401 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter Process-401 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter Process-402 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter Process-402 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter Process-403 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter Process-403 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess pypet.test ERROR ttt MainProcess pypet.test ERROR ttt ok test_logging_show_progress (integration.logging_multiproc_test.MultiprocNoPoolLockLoggingTest.test_logging_show_progress) ... MainProcess 2024-11-14 17:52:59,627 progress ERROR PROGRESS: Finished 0/7 runs [ ] 0.0% Process-404 2024-11-14 17:52:59,638 pypet.ERROR ERROR ERROR_Test! Process-404 2024-11-14 17:52:59,638 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-405 2024-11-14 17:52:59,643 pypet.ERROR ERROR ERROR_Test! Process-404 2024-11-14 17:52:59,643 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter Process-405 2024-11-14 17:52:59,644 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-406 2024-11-14 17:52:59,649 pypet.ERROR ERROR ERROR_Test! Process-406 2024-11-14 17:52:59,649 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-407 2024-11-14 17:52:59,651 pypet.ERROR ERROR ERROR_Test! MainProcess 2024-11-14 17:52:59,652 progress ERROR PROGRESS: Finished 1/7 runs [== ] 14.3%, remaining: 0:00:00 Process-407 2024-11-14 17:52:59,652 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-405 2024-11-14 17:52:59,656 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-11-14 17:52:59,663 progress ERROR PROGRESS: Finished 2/7 runs [===== ] 28.6%, remaining: 0:00:00 Process-408 2024-11-14 17:52:59,666 pypet.ERROR ERROR ERROR_Test! Process-408 2024-11-14 17:52:59,666 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-406 2024-11-14 17:52:59,668 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-11-14 17:52:59,675 progress ERROR PROGRESS: Finished 3/7 runs [======== ] 42.9%, remaining: 0:00:00 Process-409 2024-11-14 17:52:59,676 pypet.ERROR ERROR ERROR_Test! Process-409 2024-11-14 17:52:59,676 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-407 2024-11-14 17:52:59,679 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-11-14 17:52:59,686 progress ERROR PROGRESS: Finished 4/7 runs [=========== ] 57.1%, remaining: 0:00:00 Process-410 2024-11-14 17:52:59,688 pypet.ERROR ERROR ERROR_Test! Process-410 2024-11-14 17:52:59,688 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-408 2024-11-14 17:52:59,691 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-11-14 17:52:59,697 progress ERROR PROGRESS: Finished 5/7 runs [============== ] 71.4%, remaining: 0:00:00 Process-409 2024-11-14 17:52:59,702 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-11-14 17:52:59,708 progress ERROR PROGRESS: Finished 6/7 runs [================= ] 85.7%, remaining: 0:00:00 Process-410 2024-11-14 17:52:59,712 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-11-14 17:52:59,720 progress ERROR PROGRESS: Finished 7/7 runs [====================]100.0% ok test_logging_show_progress_print (integration.logging_multiproc_test.MultiprocNoPoolLockLoggingTest.test_logging_show_progress_print) ... MainProcess 2024-11-14 17:52:59,892 prostdout CRITICAL Established redirection of `stdout`. MainProcess 2024-11-14 17:52:59,933 prostdout CRITICAL PROGRESS: Finished 0/7 runs [ ] 0.0% Process-411 2024-11-14 17:52:59,943 prostdout CRITICAL Established redirection of `stdout`. Process-411 2024-11-14 17:52:59,944 pypet.ERROR ERROR ERROR_Test! Process-411 2024-11-14 17:52:59,944 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-412 2024-11-14 17:52:59,948 prostdout CRITICAL Established redirection of `stdout`. Process-412 2024-11-14 17:52:59,950 pypet.ERROR ERROR ERROR_Test! Process-412 2024-11-14 17:52:59,950 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-411 2024-11-14 17:52:59,951 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter Process-413 2024-11-14 17:52:59,954 prostdout CRITICAL Established redirection of `stdout`. Process-413 2024-11-14 17:52:59,955 pypet.ERROR ERROR ERROR_Test! Process-413 2024-11-14 17:52:59,955 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-414 2024-11-14 17:52:59,956 prostdout CRITICAL Established redirection of `stdout`. Process-414 2024-11-14 17:52:59,957 pypet.ERROR ERROR ERROR_Test! Process-414 2024-11-14 17:52:59,957 pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess 2024-11-14 17:52:59,959 prostdout CRITICAL PROGRESS: Finished 1/7 runs [== ] 14.3%, remaining: 0:00:00 Process-412 2024-11-14 17:52:59,963 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-11-14 17:52:59,972 prostdout CRITICAL PROGRESS: Finished 2/7 runs [===== ] 28.6%, remaining: 0:00:00 Process-415 2024-11-14 17:52:59,973 prostdout CRITICAL Established redirection of `stdout`. Process-415 2024-11-14 17:52:59,974 pypet.ERROR ERROR ERROR_Test! Process-415 2024-11-14 17:52:59,974 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-413 2024-11-14 17:52:59,976 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-11-14 17:52:59,985 prostdout CRITICAL PROGRESS: Finished 3/7 runs [======== ] 42.9%, remaining: 0:00:00 Process-416 2024-11-14 17:52:59,987 prostdout CRITICAL Established redirection of `stdout`. Process-416 2024-11-14 17:52:59,988 pypet.ERROR ERROR ERROR_Test! Process-416 2024-11-14 17:52:59,988 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-414 2024-11-14 17:52:59,988 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-11-14 17:52:59,997 prostdout CRITICAL PROGRESS: Finished 4/7 runs [=========== ] 57.1%, remaining: 0:00:00 Process-417 2024-11-14 17:53:00,000 prostdout CRITICAL Established redirection of `stdout`. Process-417 2024-11-14 17:53:00,001 pypet.ERROR ERROR ERROR_Test! Process-417 2024-11-14 17:53:00,001 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-415 2024-11-14 17:53:00,002 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-11-14 17:53:00,009 prostdout CRITICAL PROGRESS: Finished 5/7 runs [============== ] 71.4%, remaining: 0:00:00 Process-416 2024-11-14 17:53:00,015 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-11-14 17:53:00,023 prostdout CRITICAL PROGRESS: Finished 6/7 runs [================= ] 85.7%, remaining: 0:00:00 Process-417 2024-11-14 17:53:00,028 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-11-14 17:53:00,036 prostdout CRITICAL PROGRESS: Finished 7/7 runs [====================]100.0% ok test_logging_stdout (integration.logging_multiproc_test.MultiprocNoPoolLockLoggingTest.test_logging_stdout) ... MainProcess 2024-11-14 17:53:00,212 STDOUT CRITICAL Established redirection of `stdout`. MainProcess 2024-11-14 17:53:00,225 pypet.only.ERROR ERROR Test of Error Logging during run! MainProcess 2024-11-14 17:53:00,227 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-11-14 17:53:00,458 STDOUT CRITICAL sTdOuTLoGGinG ok test_throw_error_when_specifying_config_and_old_method (integration.logging_multiproc_test.MultiprocNoPoolLockLoggingTest.test_throw_error_when_specifying_config_and_old_method) ... ok test_NOT_purge_duplicate_comments (integration.environment_multiproc_test.MultiprocNoPoolLockTest.test_NOT_purge_duplicate_comments) ... Disabled redirection of `stdout`. Disabled redirection of `stdout`. ok test_a_large_run (integration.environment_multiproc_test.MultiprocNoPoolLockTest.test_a_large_run) ... ok test_errors (integration.environment_multiproc_test.MultiprocNoPoolLockTest.test_errors) ... ok test_expand (integration.environment_multiproc_test.MultiprocNoPoolLockTest.test_expand) ... ok test_expand_after_reload (integration.environment_multiproc_test.MultiprocNoPoolLockTest.test_expand_after_reload) ... ok test_file_overwriting (integration.environment_multiproc_test.MultiprocNoPoolLockTest.test_file_overwriting) ... ok test_just_one_run (integration.environment_multiproc_test.MultiprocNoPoolLockTest.test_just_one_run) ... ok test_niceness (integration.environment_multiproc_test.MultiprocNoPoolLockTest.test_niceness) ... ok test_purge_duplicate_comments (integration.environment_multiproc_test.MultiprocNoPoolLockTest.test_purge_duplicate_comments) ... MainProcess 2024-11-14 17:53:09,644 pypet.storageservice.HDF5StorageService ERROR Failed storing `Trajectory T__test_purge_duplicate_comments__3989_2024_11_14_17h53m09s (len:4): (config: ), (parameters: ), (derived_parameters: ), (results: ), (testleaf0: ), (testleaf1: ), ...` ok test_run (integration.environment_multiproc_test.MultiprocNoPoolLockTest.test_run) ... ok test_run_complex (integration.environment_multiproc_test.MultiprocNoPoolLockTest.test_run_complex) ... ok test_store_form_tuple (integration.environment_multiproc_test.MultiprocNoPoolLockTest.test_store_form_tuple) ... ok test_store_single_group (integration.environment_multiproc_test.MultiprocNoPoolLockTest.test_store_single_group) ... MainProcess 2024-11-14 17:53:13,821 pypet.storageservice.HDF5StorageService ERROR Failed loading `ParameterGroup parameters: (Normal: ), (Numpy: ), (Sparse: ), (Numpy_2D: ), (Numpy_3D: ), (Tuples: ), ...` ok test_switch_ON_large_tables (integration.environment_multiproc_test.MultiprocNoPoolLockTest.test_switch_ON_large_tables) ... ok test_switch_off_all_tables (integration.environment_multiproc_test.MultiprocNoPoolLockTest.test_switch_off_all_tables) ... ok test_switch_on_all_comments (integration.environment_multiproc_test.MultiprocNoPoolLockTest.test_switch_on_all_comments) ... ok test_time_display_of_loading (integration.environment_multiproc_test.MultiprocNoPoolLockTest.test_time_display_of_loading) ... ok test_two_runs (integration.environment_multiproc_test.MultiprocNoPoolLockTest.test_two_runs) ... ok test_disable (integration.logging_multiproc_test.MultiprocNoPoolQueueLoggingTest.test_disable) ... WARNING_Test! ERROR_Test! CRITICAL_Test! WARNING_Test! ERROR_Test! CRITICAL_Test! WARNING_Test! ERROR_Test! CRITICAL_Test! STORE_Test! in parameter WARNING_Test! ERROR_Test! CRITICAL_Test! STORE_Test! in parameter WARNING_Test! ERROR_Test! CRITICAL_Test! STORE_Test! in parameter WARNING_Test! ERROR_Test! CRITICAL_Test! STORE_Test! in parameter WARNING_Test! ERROR_Test! CRITICAL_Test! STORE_Test! in parameter STORE_Test! in parameter STORE_Test! in parameter ok test_file_renaming (integration.logging_multiproc_test.MultiprocNoPoolQueueLoggingTest.test_file_renaming) ... ok test_logfile_creation_normal (integration.logging_multiproc_test.MultiprocNoPoolQueueLoggingTest.test_logfile_creation_normal) ... ok test_logfile_creation_with_errors (integration.logging_multiproc_test.MultiprocNoPoolQueueLoggingTest.test_logfile_creation_with_errors) ... Process-492 2024-11-14 17:53:23,324 pypet.ERROR ERROR ERROR_Test! Process-492 2024-11-14 17:53:23,324 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-493 2024-11-14 17:53:23,328 pypet.ERROR ERROR ERROR_Test! Process-493 2024-11-14 17:53:23,328 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-494 2024-11-14 17:53:23,337 pypet.ERROR ERROR ERROR_Test! Process-494 2024-11-14 17:53:23,337 pypet.CRITICAL CRITICAL CRITICAL_Test! QueueProcess 2024-11-14 17:53:23,342 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter Process-495 2024-11-14 17:53:23,349 pypet.ERROR ERROR ERROR_Test! Process-495 2024-11-14 17:53:23,349 pypet.CRITICAL CRITICAL CRITICAL_Test! QueueProcess 2024-11-14 17:53:23,353 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter Process-496 2024-11-14 17:53:23,356 pypet.ERROR ERROR ERROR_Test! Process-496 2024-11-14 17:53:23,357 pypet.CRITICAL CRITICAL CRITICAL_Test! QueueProcess 2024-11-14 17:53:23,361 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter Process-497 2024-11-14 17:53:23,362 pypet.ERROR ERROR ERROR_Test! Process-497 2024-11-14 17:53:23,362 pypet.CRITICAL CRITICAL CRITICAL_Test! QueueProcess 2024-11-14 17:53:23,368 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter Process-498 2024-11-14 17:53:23,373 pypet.ERROR ERROR ERROR_Test! Process-498 2024-11-14 17:53:23,373 pypet.CRITICAL CRITICAL CRITICAL_Test! QueueProcess 2024-11-14 17:53:23,374 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess 2024-11-14 17:53:23,378 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess 2024-11-14 17:53:23,383 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-11-14 17:53:23,570 pypet.test ERROR ttt ok test_logfile_old_way_creation_with_errors (integration.logging_multiproc_test.MultiprocNoPoolQueueLoggingTest.test_logfile_old_way_creation_with_errors) ... MainProcess pypet.test ERROR ttt MainProcess pypet.test ERROR ttt ok test_logfile_old_way_disabling_mp_log (integration.logging_multiproc_test.MultiprocNoPoolQueueLoggingTest.test_logfile_old_way_disabling_mp_log) ... Process-510 pypet.ERROR ERROR ERROR_Test! Process-510 pypet.ERROR ERROR ERROR_Test! Process-510 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-510 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-511 pypet.ERROR ERROR ERROR_Test! Process-512 pypet.ERROR ERROR ERROR_Test! Process-511 pypet.ERROR ERROR ERROR_Test! Process-511 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-511 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-512 pypet.ERROR ERROR ERROR_Test! Process-512 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-512 pypet.CRITICAL CRITICAL CRITICAL_Test! QueueProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter Process-513 pypet.ERROR ERROR ERROR_Test! Process-513 pypet.ERROR ERROR ERROR_Test! Process-513 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-513 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-514 pypet.ERROR ERROR ERROR_Test! Process-514 pypet.ERROR ERROR ERROR_Test! Process-514 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-514 pypet.CRITICAL CRITICAL CRITICAL_Test! QueueProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter Process-515 pypet.ERROR ERROR ERROR_Test! Process-515 pypet.ERROR ERROR ERROR_Test! Process-515 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-515 pypet.CRITICAL CRITICAL CRITICAL_Test! QueueProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter Process-516 pypet.ERROR ERROR ERROR_Test! Process-516 pypet.ERROR ERROR ERROR_Test! Process-516 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-516 pypet.CRITICAL CRITICAL CRITICAL_Test! QueueProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess pypet.test ERROR ttt MainProcess pypet.test ERROR ttt ok test_logging_show_progress (integration.logging_multiproc_test.MultiprocNoPoolQueueLoggingTest.test_logging_show_progress) ... MainProcess 2024-11-14 17:53:24,235 progress ERROR PROGRESS: Finished 0/7 runs [ ] 0.0% Process-519 2024-11-14 17:53:24,247 pypet.ERROR ERROR ERROR_Test! Process-519 2024-11-14 17:53:24,247 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-520 2024-11-14 17:53:24,251 pypet.ERROR ERROR ERROR_Test! Process-520 2024-11-14 17:53:24,251 pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess 2024-11-14 17:53:24,252 progress ERROR PROGRESS: Finished 1/7 runs [== ] 14.3%, remaining: 0:00:00 MainProcess 2024-11-14 17:53:24,259 progress ERROR PROGRESS: Finished 2/7 runs [===== ] 28.6%, remaining: 0:00:00 Process-521 2024-11-14 17:53:24,263 pypet.ERROR ERROR ERROR_Test! Process-521 2024-11-14 17:53:24,263 pypet.CRITICAL CRITICAL CRITICAL_Test! QueueProcess 2024-11-14 17:53:24,264 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-11-14 17:53:24,270 progress ERROR PROGRESS: Finished 3/7 runs [======== ] 42.9%, remaining: 0:00:00 Process-522 2024-11-14 17:53:24,272 pypet.ERROR ERROR ERROR_Test! Process-522 2024-11-14 17:53:24,272 pypet.CRITICAL CRITICAL CRITICAL_Test! QueueProcess 2024-11-14 17:53:24,274 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-11-14 17:53:24,277 progress ERROR PROGRESS: Finished 4/7 runs [=========== ] 57.1%, remaining: 0:00:00 Process-523 2024-11-14 17:53:24,279 pypet.ERROR ERROR ERROR_Test! Process-523 2024-11-14 17:53:24,279 pypet.CRITICAL CRITICAL CRITICAL_Test! QueueProcess 2024-11-14 17:53:24,281 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-11-14 17:53:24,284 progress ERROR PROGRESS: Finished 5/7 runs [============== ] 71.4%, remaining: 0:00:00 Process-524 2024-11-14 17:53:24,285 pypet.ERROR ERROR ERROR_Test! Process-524 2024-11-14 17:53:24,286 pypet.CRITICAL CRITICAL CRITICAL_Test! QueueProcess 2024-11-14 17:53:24,287 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-11-14 17:53:24,291 progress ERROR PROGRESS: Finished 6/7 runs [================= ] 85.7%, remaining: 0:00:00 QueueProcess 2024-11-14 17:53:24,293 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter Process-525 2024-11-14 17:53:24,297 pypet.ERROR ERROR ERROR_Test! Process-525 2024-11-14 17:53:24,297 pypet.CRITICAL CRITICAL CRITICAL_Test! QueueProcess 2024-11-14 17:53:24,297 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-11-14 17:53:24,300 progress ERROR PROGRESS: Finished 7/7 runs [====================]100.0% QueueProcess 2024-11-14 17:53:24,302 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter ok test_logging_show_progress_print (integration.logging_multiproc_test.MultiprocNoPoolQueueLoggingTest.test_logging_show_progress_print) ... MainProcess 2024-11-14 17:53:24,496 prostdout CRITICAL Established redirection of `stdout`. MainProcess 2024-11-14 17:53:24,553 prostdout CRITICAL PROGRESS: Finished 0/7 runs [ ] 0.0% QueueProcess 2024-11-14 17:53:24,557 prostdout CRITICAL Established redirection of `stdout`. Process-528 2024-11-14 17:53:24,564 prostdout CRITICAL Established redirection of `stdout`. Process-528 2024-11-14 17:53:24,565 pypet.ERROR ERROR ERROR_Test! Process-528 2024-11-14 17:53:24,565 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-529 2024-11-14 17:53:24,569 prostdout CRITICAL Established redirection of `stdout`. Process-529 2024-11-14 17:53:24,570 pypet.ERROR ERROR ERROR_Test! Process-529 2024-11-14 17:53:24,570 pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess 2024-11-14 17:53:24,574 prostdout CRITICAL PROGRESS: Finished 1/7 runs [== ] 14.3%, remaining: 0:00:00 Process-530 2024-11-14 17:53:24,578 prostdout CRITICAL Established redirection of `stdout`. MainProcess 2024-11-14 17:53:24,579 prostdout CRITICAL PROGRESS: Finished 2/7 runs [===== ] 28.6%, remaining: 0:00:00 Process-530 2024-11-14 17:53:24,580 pypet.ERROR ERROR ERROR_Test! Process-530 2024-11-14 17:53:24,580 pypet.CRITICAL CRITICAL CRITICAL_Test! QueueProcess 2024-11-14 17:53:24,584 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-11-14 17:53:24,589 prostdout CRITICAL PROGRESS: Finished 3/7 runs [======== ] 42.9%, remaining: 0:00:00 Process-531 2024-11-14 17:53:24,592 prostdout CRITICAL Established redirection of `stdout`. Process-531 2024-11-14 17:53:24,593 pypet.ERROR ERROR ERROR_Test! Process-531 2024-11-14 17:53:24,593 pypet.CRITICAL CRITICAL CRITICAL_Test! QueueProcess 2024-11-14 17:53:24,595 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-11-14 17:53:24,598 prostdout CRITICAL PROGRESS: Finished 4/7 runs [=========== ] 57.1%, remaining: 0:00:00 Process-532 2024-11-14 17:53:24,598 prostdout CRITICAL Established redirection of `stdout`. Process-532 2024-11-14 17:53:24,600 pypet.ERROR ERROR ERROR_Test! Process-532 2024-11-14 17:53:24,600 pypet.CRITICAL CRITICAL CRITICAL_Test! QueueProcess 2024-11-14 17:53:24,602 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter Process-533 2024-11-14 17:53:24,603 prostdout CRITICAL Established redirection of `stdout`. Process-533 2024-11-14 17:53:24,604 pypet.ERROR ERROR ERROR_Test! Process-533 2024-11-14 17:53:24,604 pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess 2024-11-14 17:53:24,610 prostdout CRITICAL PROGRESS: Finished 5/7 runs [============== ] 71.4%, remaining: 0:00:00 QueueProcess 2024-11-14 17:53:24,610 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-11-14 17:53:24,613 prostdout CRITICAL PROGRESS: Finished 6/7 runs [================= ] 85.7%, remaining: 0:00:00 Process-534 2024-11-14 17:53:24,614 prostdout CRITICAL Established redirection of `stdout`. Process-534 2024-11-14 17:53:24,615 pypet.ERROR ERROR ERROR_Test! Process-534 2024-11-14 17:53:24,615 pypet.CRITICAL CRITICAL CRITICAL_Test! QueueProcess 2024-11-14 17:53:24,616 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-11-14 17:53:24,619 prostdout CRITICAL PROGRESS: Finished 7/7 runs [====================]100.0% QueueProcess 2024-11-14 17:53:24,622 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess 2024-11-14 17:53:24,626 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter ok test_logging_stdout (integration.logging_multiproc_test.MultiprocNoPoolQueueLoggingTest.test_logging_stdout) ... MainProcess 2024-11-14 17:53:24,818 STDOUT CRITICAL Established redirection of `stdout`. MainProcess 2024-11-14 17:53:24,831 pypet.only.ERROR ERROR Test of Error Logging during run! MainProcess 2024-11-14 17:53:24,833 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-11-14 17:53:25,070 STDOUT CRITICAL sTdOuTLoGGinG ok test_throw_error_when_specifying_config_and_old_method (integration.logging_multiproc_test.MultiprocNoPoolQueueLoggingTest.test_throw_error_when_specifying_config_and_old_method) ... ok test_expand (integration.environment_multiproc_test.MultiprocNoPoolSortLocalTest.test_expand) ... Disabled redirection of `stdout`. Disabled redirection of `stdout`. ok test_expand_after_reload (integration.environment_multiproc_test.MultiprocNoPoolSortLocalTest.test_expand_after_reload) ... ok test_f_iter_runs (integration.environment_multiproc_test.MultiprocNoPoolSortLocalTest.test_f_iter_runs) ... ok test_f_iter_runs_auto_load (integration.environment_multiproc_test.MultiprocNoPoolSortLocalTest.test_f_iter_runs_auto_load) ... ok test_graceful_exit (integration.environment_multiproc_test.MultiprocNoPoolSortLocalTest.test_graceful_exit) ... You killed the process(es) via `SIGINT` (`CTRL+C`). I am trying to exit gracefully. Using `SIGINT` (`CTRL+C`) again will cause an immediate exit. You killed the process(es) via `SIGINT` (`CTRL+C`). I am trying to exit gracefully. Using `SIGINT` (`CTRL+C`) again will cause an immediate exit. MainProcess 2024-11-14 17:53:28,032 pypet.environment.Environment ERROR Following runs of trajectory `T__test_graceful_exit__66550` did NOT complete: `run_00000006, run_00000007, run_00000008, run_00000009, run_00000010, run_00000011, run_00000012, run_00000013, run_00000014, run_00000015, run_00000016, run_00000017, run_00000018, run_00000019, run_00000020, run_00000021, run_00000022, run_00000023, run_00000024, run_00000025, run_00000026, run_00000027, run_00000028, run_00000029, run_00000030, run_00000031, run_00000032, run_00000033, run_00000034, run_00000035, run_00000036, run_00000037, run_00000038, run_00000039, run_00000040, run_00000041, run_00000042, run_00000043, run_00000044, run_00000045, run_00000046, run_00000047, run_00000048` ok test_if_results_are_sorted_correctly (integration.environment_multiproc_test.MultiprocNoPoolSortLocalTest.test_if_results_are_sorted_correctly) ... ok test_if_results_are_sorted_correctly_manual_runs (integration.environment_multiproc_test.MultiprocNoPoolSortLocalTest.test_if_results_are_sorted_correctly_manual_runs) ... ok test_if_results_are_sorted_correctly_using_map (integration.environment_multiproc_test.MultiprocNoPoolSortLocalTest.test_if_results_are_sorted_correctly_using_map) ... ok test_expand (integration.environment_multiproc_test.MultiprocNoPoolSortLockTest.test_expand) ... ok test_expand_after_reload (integration.environment_multiproc_test.MultiprocNoPoolSortLockTest.test_expand_after_reload) ... ok test_f_iter_runs (integration.environment_multiproc_test.MultiprocNoPoolSortLockTest.test_f_iter_runs) ... ok test_f_iter_runs_auto_load (integration.environment_multiproc_test.MultiprocNoPoolSortLockTest.test_f_iter_runs_auto_load) ... ok test_graceful_exit (integration.environment_multiproc_test.MultiprocNoPoolSortLockTest.test_graceful_exit) ... You killed the process(es) via `SIGINT` (`CTRL+C`). I am trying to exit gracefully. Using `SIGINT` (`CTRL+C`) again will cause an immediate exit. You killed the process(es) via `SIGINT` (`CTRL+C`). I am trying to exit gracefully. Using `SIGINT` (`CTRL+C`) again will cause an immediate exit. You killed the process(es) via `SIGINT` (`CTRL+C`). I am trying to exit gracefully. Using `SIGINT` (`CTRL+C`) again will cause an immediate exit. MainProcess 2024-11-14 17:53:32,464 pypet.environment.Environment ERROR Following runs of trajectory `T__test_graceful_exit__15369` did NOT complete: `run_00000007, run_00000008, run_00000009, run_00000010, run_00000011, run_00000012, run_00000013, run_00000014, run_00000015, run_00000016, run_00000017, run_00000018, run_00000019, run_00000020, run_00000021, run_00000022, run_00000023, run_00000024, run_00000025, run_00000026, run_00000027, run_00000028, run_00000029, run_00000030, run_00000031, run_00000032, run_00000033, run_00000034, run_00000035, run_00000036, run_00000037, run_00000038, run_00000039, run_00000040, run_00000041, run_00000042, run_00000043, run_00000044, run_00000045, run_00000046, run_00000047, run_00000048` ok test_if_results_are_sorted_correctly (integration.environment_multiproc_test.MultiprocNoPoolSortLockTest.test_if_results_are_sorted_correctly) ... ok test_if_results_are_sorted_correctly_manual_runs (integration.environment_multiproc_test.MultiprocNoPoolSortLockTest.test_if_results_are_sorted_correctly_manual_runs) ... ok test_if_results_are_sorted_correctly_using_map (integration.environment_multiproc_test.MultiprocNoPoolSortLockTest.test_if_results_are_sorted_correctly_using_map) ... ok test_expand (integration.environment_multiproc_test.MultiprocNoPoolSortPipeTest.test_expand) ... ok test_expand_after_reload (integration.environment_multiproc_test.MultiprocNoPoolSortPipeTest.test_expand_after_reload) ... ok test_f_iter_runs (integration.environment_multiproc_test.MultiprocNoPoolSortPipeTest.test_f_iter_runs) ... ok test_f_iter_runs_auto_load (integration.environment_multiproc_test.MultiprocNoPoolSortPipeTest.test_f_iter_runs_auto_load) ... ok test_graceful_exit (integration.environment_multiproc_test.MultiprocNoPoolSortPipeTest.test_graceful_exit) ... You killed the process(es) via `SIGINT` (`CTRL+C`). I am trying to exit gracefully. Using `SIGINT` (`CTRL+C`) again will cause an immediate exit. You killed the process(es) via `SIGINT` (`CTRL+C`). I am trying to exit gracefully. Using `SIGINT` (`CTRL+C`) again will cause an immediate exit. You killed the process(es) via `SIGINT` (`CTRL+C`). I am trying to exit gracefully. Using `SIGINT` (`CTRL+C`) again will cause an immediate exit. MainProcess 2024-11-14 17:53:36,835 pypet.environment.Environment ERROR Following runs of trajectory `T__test_graceful_exit__60549` did NOT complete: `run_00000007, run_00000008, run_00000009, run_00000010, run_00000011, run_00000012, run_00000013, run_00000014, run_00000015, run_00000016, run_00000017, run_00000018, run_00000019, run_00000020, run_00000021, run_00000022, run_00000023, run_00000024, run_00000025, run_00000026, run_00000027, run_00000028, run_00000029, run_00000030, run_00000031, run_00000032, run_00000033, run_00000034, run_00000035, run_00000036, run_00000037, run_00000038, run_00000039, run_00000040, run_00000041, run_00000042, run_00000043, run_00000044, run_00000045, run_00000046, run_00000047, run_00000048` ok test_if_results_are_sorted_correctly (integration.environment_multiproc_test.MultiprocNoPoolSortPipeTest.test_if_results_are_sorted_correctly) ... ok test_if_results_are_sorted_correctly_manual_runs (integration.environment_multiproc_test.MultiprocNoPoolSortPipeTest.test_if_results_are_sorted_correctly_manual_runs) ... ok test_if_results_are_sorted_correctly_using_map (integration.environment_multiproc_test.MultiprocNoPoolSortPipeTest.test_if_results_are_sorted_correctly_using_map) ... ok test_expand (integration.environment_multiproc_test.MultiprocNoPoolSortQueueTest.test_expand) ... ok test_expand_after_reload (integration.environment_multiproc_test.MultiprocNoPoolSortQueueTest.test_expand_after_reload) ... ok test_f_iter_runs (integration.environment_multiproc_test.MultiprocNoPoolSortQueueTest.test_f_iter_runs) ... ok test_f_iter_runs_auto_load (integration.environment_multiproc_test.MultiprocNoPoolSortQueueTest.test_f_iter_runs_auto_load) ... ok test_graceful_exit (integration.environment_multiproc_test.MultiprocNoPoolSortQueueTest.test_graceful_exit) ... You killed the process(es) via `SIGINT` (`CTRL+C`). I am trying to exit gracefully. Using `SIGINT` (`CTRL+C`) again will cause an immediate exit. You killed the process(es) via `SIGINT` (`CTRL+C`). I am trying to exit gracefully. Using `SIGINT` (`CTRL+C`) again will cause an immediate exit. You killed the process(es) via `SIGINT` (`CTRL+C`). I am trying to exit gracefully. Using `SIGINT` (`CTRL+C`) again will cause an immediate exit. MainProcess 2024-11-14 17:53:41,311 pypet.environment.Environment ERROR Following runs of trajectory `T__test_graceful_exit__71666` did NOT complete: `run_00000007, run_00000008, run_00000009, run_00000010, run_00000011, run_00000012, run_00000013, run_00000014, run_00000015, run_00000016, run_00000017, run_00000018, run_00000019, run_00000020, run_00000021, run_00000022, run_00000023, run_00000024, run_00000025, run_00000026, run_00000027, run_00000028, run_00000029, run_00000030, run_00000031, run_00000032, run_00000033, run_00000034, run_00000035, run_00000036, run_00000037, run_00000038, run_00000039, run_00000040, run_00000041, run_00000042, run_00000043, run_00000044, run_00000045, run_00000046, run_00000047, run_00000048` ok test_if_results_are_sorted_correctly (integration.environment_multiproc_test.MultiprocNoPoolSortQueueTest.test_if_results_are_sorted_correctly) ... ok test_if_results_are_sorted_correctly_manual_runs (integration.environment_multiproc_test.MultiprocNoPoolSortQueueTest.test_if_results_are_sorted_correctly_manual_runs) ... ok test_if_results_are_sorted_correctly_using_map (integration.environment_multiproc_test.MultiprocNoPoolSortQueueTest.test_if_results_are_sorted_correctly_using_map) ... ok test_disable (integration.logging_multiproc_test.MultiprocPoolLockLoggingTest.test_disable) ... WARNING_Test! ERROR_Test! CRITICAL_Test! WARNING_Test! ERROR_Test! CRITICAL_Test! STORE_Test! in parameter WARNING_Test! ERROR_Test! CRITICAL_Test! STORE_Test! in parameter WARNING_Test! ERROR_Test! CRITICAL_Test! STORE_Test! in parameter WARNING_Test! ERROR_Test! CRITICAL_Test! STORE_Test! in parameter WARNING_Test! ERROR_Test! CRITICAL_Test! STORE_Test! in parameter WARNING_Test! ERROR_Test! CRITICAL_Test! STORE_Test! in parameter STORE_Test! in parameter ok test_file_renaming (integration.logging_multiproc_test.MultiprocPoolLockLoggingTest.test_file_renaming) ... ok test_logfile_creation_normal (integration.logging_multiproc_test.MultiprocPoolLockLoggingTest.test_logfile_creation_normal) ... ok test_logfile_creation_with_errors (integration.logging_multiproc_test.MultiprocPoolLockLoggingTest.test_logfile_creation_with_errors) ... ForkPoolWorker-726 2024-11-14 17:53:43,440 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-726 2024-11-14 17:53:43,440 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-727 2024-11-14 17:53:43,442 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-727 2024-11-14 17:53:43,442 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-726 2024-11-14 17:53:43,445 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter ForkPoolWorker-726 2024-11-14 17:53:43,452 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-726 2024-11-14 17:53:43,452 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-727 2024-11-14 17:53:43,456 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter ForkPoolWorker-727 2024-11-14 17:53:43,464 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-727 2024-11-14 17:53:43,464 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-726 2024-11-14 17:53:43,465 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter ForkPoolWorker-726 2024-11-14 17:53:43,469 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-726 2024-11-14 17:53:43,469 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-727 2024-11-14 17:53:43,470 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter ForkPoolWorker-727 2024-11-14 17:53:43,474 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-727 2024-11-14 17:53:43,474 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-726 2024-11-14 17:53:43,475 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter ForkPoolWorker-726 2024-11-14 17:53:43,479 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-726 2024-11-14 17:53:43,479 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-727 2024-11-14 17:53:43,479 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter ForkPoolWorker-726 2024-11-14 17:53:43,484 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-11-14 17:53:43,656 pypet.test ERROR ttt ok test_logfile_old_way_creation_with_errors (integration.logging_multiproc_test.MultiprocPoolLockLoggingTest.test_logfile_old_way_creation_with_errors) ... MainProcess pypet.test ERROR ttt MainProcess pypet.test ERROR ttt ok test_logfile_old_way_disabling_mp_log (integration.logging_multiproc_test.MultiprocPoolLockLoggingTest.test_logfile_old_way_disabling_mp_log) ... ForkPoolWorker-730 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-730 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-730 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-730 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-731 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-731 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-731 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-731 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-730 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter ForkPoolWorker-730 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter ForkPoolWorker-730 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-730 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-730 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-730 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-731 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter ForkPoolWorker-731 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter ForkPoolWorker-731 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-731 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-731 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-731 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-730 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter ForkPoolWorker-730 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter ForkPoolWorker-730 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-730 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-730 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-730 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-731 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter ForkPoolWorker-731 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter ForkPoolWorker-731 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-731 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-731 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-731 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-730 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter ForkPoolWorker-730 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter ForkPoolWorker-730 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-730 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-730 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-730 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-731 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter ForkPoolWorker-731 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter ForkPoolWorker-730 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter ForkPoolWorker-730 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess pypet.test ERROR ttt MainProcess pypet.test ERROR ttt ok test_logging_show_progress (integration.logging_multiproc_test.MultiprocPoolLockLoggingTest.test_logging_show_progress) ... MainProcess 2024-11-14 17:53:44,260 progress ERROR PROGRESS: Finished 0/7 runs [ ] 0.0% ForkPoolWorker-732 2024-11-14 17:53:44,264 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-732 2024-11-14 17:53:44,264 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-733 2024-11-14 17:53:44,265 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-733 2024-11-14 17:53:44,265 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-732 2024-11-14 17:53:44,269 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter ForkPoolWorker-732 2024-11-14 17:53:44,277 pypet.ERROR ERROR ERROR_Test! MainProcess 2024-11-14 17:53:44,277 progress ERROR PROGRESS: Finished 1/7 runs [== ] 14.3%, remaining: 0:00:00 ForkPoolWorker-732 2024-11-14 17:53:44,277 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-733 2024-11-14 17:53:44,280 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-11-14 17:53:44,288 progress ERROR PROGRESS: Finished 2/7 runs [===== ] 28.6%, remaining: 0:00:00 ForkPoolWorker-733 2024-11-14 17:53:44,288 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-733 2024-11-14 17:53:44,288 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-732 2024-11-14 17:53:44,290 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-11-14 17:53:44,294 progress ERROR PROGRESS: Finished 3/7 runs [======== ] 42.9%, remaining: 0:00:00 ForkPoolWorker-732 2024-11-14 17:53:44,294 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-732 2024-11-14 17:53:44,294 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-733 2024-11-14 17:53:44,295 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-11-14 17:53:44,299 progress ERROR PROGRESS: Finished 4/7 runs [=========== ] 57.1%, remaining: 0:00:00 ForkPoolWorker-733 2024-11-14 17:53:44,299 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-733 2024-11-14 17:53:44,299 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-732 2024-11-14 17:53:44,300 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-11-14 17:53:44,304 progress ERROR PROGRESS: Finished 5/7 runs [============== ] 71.4%, remaining: 0:00:00 ForkPoolWorker-732 2024-11-14 17:53:44,305 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-732 2024-11-14 17:53:44,305 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-733 2024-11-14 17:53:44,305 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-11-14 17:53:44,309 progress ERROR PROGRESS: Finished 6/7 runs [================= ] 85.7%, remaining: 0:00:00 ForkPoolWorker-732 2024-11-14 17:53:44,310 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-11-14 17:53:44,313 progress ERROR PROGRESS: Finished 7/7 runs [====================]100.0% ok test_logging_show_progress_print (integration.logging_multiproc_test.MultiprocPoolLockLoggingTest.test_logging_show_progress_print) ... MainProcess 2024-11-14 17:53:44,488 prostdout CRITICAL Established redirection of `stdout`. ForkPoolWorker-734 2024-11-14 17:53:44,541 prostdout CRITICAL Established redirection of `stdout`. MainProcess 2024-11-14 17:53:44,542 prostdout CRITICAL PROGRESS: Finished 0/7 runs [ ] 0.0% ForkPoolWorker-735 2024-11-14 17:53:44,546 prostdout CRITICAL Established redirection of `stdout`. ForkPoolWorker-734 2024-11-14 17:53:44,547 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-734 2024-11-14 17:53:44,547 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-735 2024-11-14 17:53:44,548 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-735 2024-11-14 17:53:44,548 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-734 2024-11-14 17:53:44,552 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter ForkPoolWorker-734 2024-11-14 17:53:44,559 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-734 2024-11-14 17:53:44,559 pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess 2024-11-14 17:53:44,559 prostdout CRITICAL PROGRESS: Finished 1/7 runs [== ] 14.3%, remaining: 0:00:00 ForkPoolWorker-735 2024-11-14 17:53:44,563 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-11-14 17:53:44,570 prostdout CRITICAL PROGRESS: Finished 2/7 runs [===== ] 28.6%, remaining: 0:00:00 ForkPoolWorker-735 2024-11-14 17:53:44,571 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-735 2024-11-14 17:53:44,571 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-734 2024-11-14 17:53:44,572 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-11-14 17:53:44,576 prostdout CRITICAL PROGRESS: Finished 3/7 runs [======== ] 42.9%, remaining: 0:00:00 ForkPoolWorker-734 2024-11-14 17:53:44,576 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-734 2024-11-14 17:53:44,577 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-735 2024-11-14 17:53:44,577 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-11-14 17:53:44,580 prostdout CRITICAL PROGRESS: Finished 4/7 runs [=========== ] 57.1%, remaining: 0:00:00 ForkPoolWorker-735 2024-11-14 17:53:44,581 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-735 2024-11-14 17:53:44,581 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-734 2024-11-14 17:53:44,582 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-11-14 17:53:44,585 prostdout CRITICAL PROGRESS: Finished 5/7 runs [============== ] 71.4%, remaining: 0:00:00 ForkPoolWorker-734 2024-11-14 17:53:44,586 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-734 2024-11-14 17:53:44,586 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-735 2024-11-14 17:53:44,587 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-11-14 17:53:44,590 prostdout CRITICAL PROGRESS: Finished 6/7 runs [================= ] 85.7%, remaining: 0:00:00 ForkPoolWorker-734 2024-11-14 17:53:44,592 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-11-14 17:53:44,595 prostdout CRITICAL PROGRESS: Finished 7/7 runs [====================]100.0% ok test_logging_stdout (integration.logging_multiproc_test.MultiprocPoolLockLoggingTest.test_logging_stdout) ... MainProcess 2024-11-14 17:53:44,769 STDOUT CRITICAL Established redirection of `stdout`. MainProcess 2024-11-14 17:53:44,782 pypet.only.ERROR ERROR Test of Error Logging during run! MainProcess 2024-11-14 17:53:44,784 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-11-14 17:53:45,014 STDOUT CRITICAL sTdOuTLoGGinG ok test_throw_error_when_specifying_config_and_old_method (integration.logging_multiproc_test.MultiprocPoolLockLoggingTest.test_throw_error_when_specifying_config_and_old_method) ... ok test_disable (integration.logging_multiproc_test.MultiprocPoolQueueLoggingTest.test_disable) ... Disabled redirection of `stdout`. Disabled redirection of `stdout`. WARNING_Test! ERROR_Test! CRITICAL_Test! WARNING_Test! ERROR_Test! CRITICAL_Test! WARNING_Test! ERROR_Test! CRITICAL_Test! WARNING_Test! ERROR_Test! CRITICAL_Test! WARNING_Test! WARNING_Test! ERROR_Test! CRITICAL_Test! ERROR_Test! CRITICAL_Test! STORE_Test! in parameter WARNING_Test! ERROR_Test! CRITICAL_Test! STORE_Test! in parameter STORE_Test! in parameter STORE_Test! in parameter STORE_Test! in parameter STORE_Test! in parameter STORE_Test! in parameter ok test_file_renaming (integration.logging_multiproc_test.MultiprocPoolQueueLoggingTest.test_file_renaming) ... ok test_logfile_creation_normal (integration.logging_multiproc_test.MultiprocPoolQueueLoggingTest.test_logfile_creation_normal) ... ok test_logfile_creation_with_errors (integration.logging_multiproc_test.MultiprocPoolQueueLoggingTest.test_logfile_creation_with_errors) ... ForkPoolWorker-746 2024-11-14 17:53:45,691 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-746 2024-11-14 17:53:45,691 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-747 2024-11-14 17:53:45,694 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-747 2024-11-14 17:53:45,694 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-746 2024-11-14 17:53:45,695 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-746 2024-11-14 17:53:45,695 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-746 2024-11-14 17:53:45,701 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-746 2024-11-14 17:53:45,702 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-747 2024-11-14 17:53:45,704 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-747 2024-11-14 17:53:45,704 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-746 2024-11-14 17:53:45,706 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-746 2024-11-14 17:53:45,706 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-747 2024-11-14 17:53:45,707 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-747 2024-11-14 17:53:45,707 pypet.CRITICAL CRITICAL CRITICAL_Test! QueueProcess 2024-11-14 17:53:45,707 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess 2024-11-14 17:53:45,715 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess 2024-11-14 17:53:45,721 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess 2024-11-14 17:53:45,725 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess 2024-11-14 17:53:45,730 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess 2024-11-14 17:53:45,734 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess 2024-11-14 17:53:45,737 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-11-14 17:53:45,917 pypet.test ERROR ttt ok test_logfile_old_way_creation_with_errors (integration.logging_multiproc_test.MultiprocPoolQueueLoggingTest.test_logfile_old_way_creation_with_errors) ... MainProcess pypet.test ERROR ttt MainProcess pypet.test ERROR ttt ok test_logfile_old_way_disabling_mp_log (integration.logging_multiproc_test.MultiprocPoolQueueLoggingTest.test_logfile_old_way_disabling_mp_log) ... ForkPoolWorker-754 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-754 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-754 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-754 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-755 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-755 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-755 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-755 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-754 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-754 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-754 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-754 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-755 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-755 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-755 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-755 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-754 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-754 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-754 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-754 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-755 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-755 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-755 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-755 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-754 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-754 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-754 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-754 pypet.CRITICAL CRITICAL CRITICAL_Test! QueueProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess pypet.test ERROR ttt MainProcess pypet.test ERROR ttt ok test_logging_show_progress (integration.logging_multiproc_test.MultiprocPoolQueueLoggingTest.test_logging_show_progress) ... MainProcess 2024-11-14 17:53:46,571 progress ERROR PROGRESS: Finished 0/7 runs [ ] 0.0% ForkPoolWorker-758 2024-11-14 17:53:46,576 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-758 2024-11-14 17:53:46,577 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-759 2024-11-14 17:53:46,579 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-759 2024-11-14 17:53:46,579 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-758 2024-11-14 17:53:46,581 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-758 2024-11-14 17:53:46,581 pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess 2024-11-14 17:53:46,582 progress ERROR PROGRESS: Finished 1/7 runs [== ] 14.3%, remaining: 0:00:00 ForkPoolWorker-758 2024-11-14 17:53:46,586 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-758 2024-11-14 17:53:46,586 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-759 2024-11-14 17:53:46,586 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-759 2024-11-14 17:53:46,586 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-758 2024-11-14 17:53:46,590 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-758 2024-11-14 17:53:46,590 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-759 2024-11-14 17:53:46,591 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-759 2024-11-14 17:53:46,591 pypet.CRITICAL CRITICAL CRITICAL_Test! QueueProcess 2024-11-14 17:53:46,593 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-11-14 17:53:46,594 progress ERROR PROGRESS: Finished 2/7 runs [===== ] 28.6%, remaining: 0:00:00 MainProcess 2024-11-14 17:53:46,594 progress ERROR PROGRESS: Finished 3/7 runs [======== ] 42.9%, remaining: 0:00:00 MainProcess 2024-11-14 17:53:46,594 progress ERROR PROGRESS: Finished 4/7 runs [=========== ] 57.1%, remaining: 0:00:00 MainProcess 2024-11-14 17:53:46,594 progress ERROR PROGRESS: Finished 5/7 runs [============== ] 71.4%, remaining: 0:00:00 MainProcess 2024-11-14 17:53:46,600 progress ERROR PROGRESS: Finished 6/7 runs [================= ] 85.7%, remaining: 0:00:00 QueueProcess 2024-11-14 17:53:46,602 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-11-14 17:53:46,606 progress ERROR PROGRESS: Finished 7/7 runs [====================]100.0% QueueProcess 2024-11-14 17:53:46,608 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess 2024-11-14 17:53:46,613 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess 2024-11-14 17:53:46,617 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess 2024-11-14 17:53:46,621 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess 2024-11-14 17:53:46,625 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter ok test_logging_show_progress_print (integration.logging_multiproc_test.MultiprocPoolQueueLoggingTest.test_logging_show_progress_print) ... MainProcess 2024-11-14 17:53:46,806 prostdout CRITICAL Established redirection of `stdout`. QueueProcess 2024-11-14 17:53:46,863 prostdout CRITICAL Established redirection of `stdout`. MainProcess 2024-11-14 17:53:46,868 prostdout CRITICAL PROGRESS: Finished 0/7 runs [ ] 0.0% ForkPoolWorker-762 2024-11-14 17:53:46,869 prostdout CRITICAL Established redirection of `stdout`. ForkPoolWorker-763 2024-11-14 17:53:46,873 prostdout CRITICAL Established redirection of `stdout`. ForkPoolWorker-762 2024-11-14 17:53:46,877 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-762 2024-11-14 17:53:46,877 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-763 2024-11-14 17:53:46,880 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-763 2024-11-14 17:53:46,880 pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess 2024-11-14 17:53:46,881 prostdout CRITICAL PROGRESS: Finished 1/7 runs [== ] 14.3%, remaining: 0:00:00 ForkPoolWorker-762 2024-11-14 17:53:46,882 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-762 2024-11-14 17:53:46,882 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-762 2024-11-14 17:53:46,890 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-762 2024-11-14 17:53:46,891 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-763 2024-11-14 17:53:46,892 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-763 2024-11-14 17:53:46,892 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-762 2024-11-14 17:53:46,894 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-762 2024-11-14 17:53:46,894 pypet.CRITICAL CRITICAL CRITICAL_Test! QueueProcess 2024-11-14 17:53:46,895 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-11-14 17:53:46,896 prostdout CRITICAL PROGRESS: Finished 2/7 runs [===== ] 28.6%, remaining: 0:00:00 MainProcess 2024-11-14 17:53:46,896 prostdout CRITICAL PROGRESS: Finished 3/7 runs [======== ] 42.9%, remaining: 0:00:00 MainProcess 2024-11-14 17:53:46,896 prostdout CRITICAL PROGRESS: Finished 4/7 runs [=========== ] 57.1%, remaining: 0:00:00 MainProcess 2024-11-14 17:53:46,896 prostdout CRITICAL PROGRESS: Finished 5/7 runs [============== ] 71.4%, remaining: 0:00:00 ForkPoolWorker-763 2024-11-14 17:53:46,897 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-763 2024-11-14 17:53:46,897 pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess 2024-11-14 17:53:46,903 prostdout CRITICAL PROGRESS: Finished 6/7 runs [================= ] 85.7%, remaining: 0:00:00 QueueProcess 2024-11-14 17:53:46,904 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-11-14 17:53:46,907 prostdout CRITICAL PROGRESS: Finished 7/7 runs [====================]100.0% QueueProcess 2024-11-14 17:53:46,909 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess 2024-11-14 17:53:46,913 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess 2024-11-14 17:53:46,917 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess 2024-11-14 17:53:46,921 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess 2024-11-14 17:53:46,925 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter ok test_logging_stdout (integration.logging_multiproc_test.MultiprocPoolQueueLoggingTest.test_logging_stdout) ... MainProcess 2024-11-14 17:53:47,115 STDOUT CRITICAL Established redirection of `stdout`. MainProcess 2024-11-14 17:53:47,128 pypet.only.ERROR ERROR Test of Error Logging during run! MainProcess 2024-11-14 17:53:47,130 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-11-14 17:53:47,364 STDOUT CRITICAL sTdOuTLoGGinG ok test_throw_error_when_specifying_config_and_old_method (integration.logging_multiproc_test.MultiprocPoolQueueLoggingTest.test_throw_error_when_specifying_config_and_old_method) ... ok test_NOT_purge_duplicate_comments (integration.environment_multiproc_test.MultiprocPoolQueueTest.test_NOT_purge_duplicate_comments) ... Disabled redirection of `stdout`. Disabled redirection of `stdout`. ok test_a_large_run (integration.environment_multiproc_test.MultiprocPoolQueueTest.test_a_large_run) ... ok test_errors (integration.environment_multiproc_test.MultiprocPoolQueueTest.test_errors) ... ok test_expand (integration.environment_multiproc_test.MultiprocPoolQueueTest.test_expand) ... ok test_expand_after_reload (integration.environment_multiproc_test.MultiprocPoolQueueTest.test_expand_after_reload) ... ok test_file_overwriting (integration.environment_multiproc_test.MultiprocPoolQueueTest.test_file_overwriting) ... ok test_just_one_run (integration.environment_multiproc_test.MultiprocPoolQueueTest.test_just_one_run) ... ok test_niceness (integration.environment_multiproc_test.MultiprocPoolQueueTest.test_niceness) ... ok test_purge_duplicate_comments (integration.environment_multiproc_test.MultiprocPoolQueueTest.test_purge_duplicate_comments) ... MainProcess 2024-11-14 17:53:55,075 pypet.storageservice.HDF5StorageService ERROR Failed storing `Trajectory T__test_purge_duplicate_comments__58727_2024_11_14_17h53m55s (len:4): (config: ), (parameters: ), (derived_parameters: ), (results: ), (testleaf0: ), (testleaf1: ), ...` ok test_run (integration.environment_multiproc_test.MultiprocPoolQueueTest.test_run) ... ok test_run_complex (integration.environment_multiproc_test.MultiprocPoolQueueTest.test_run_complex) ... ok test_store_form_tuple (integration.environment_multiproc_test.MultiprocPoolQueueTest.test_store_form_tuple) ... ok test_store_single_group (integration.environment_multiproc_test.MultiprocPoolQueueTest.test_store_single_group) ... MainProcess 2024-11-14 17:53:58,510 pypet.storageservice.HDF5StorageService ERROR Failed loading `ParameterGroup parameters: (Normal: ), (Numpy: ), (Sparse: ), (Numpy_2D: ), (Numpy_3D: ), (Tuples: ), ...` ok test_switch_ON_large_tables (integration.environment_multiproc_test.MultiprocPoolQueueTest.test_switch_ON_large_tables) ... ok test_switch_off_all_tables (integration.environment_multiproc_test.MultiprocPoolQueueTest.test_switch_off_all_tables) ... ok test_switch_on_all_comments (integration.environment_multiproc_test.MultiprocPoolQueueTest.test_switch_on_all_comments) ... ok test_time_display_of_loading (integration.environment_multiproc_test.MultiprocPoolQueueTest.test_time_display_of_loading) ... ok test_two_runs (integration.environment_multiproc_test.MultiprocPoolQueueTest.test_two_runs) ... ok test_expand (integration.environment_multiproc_test.MultiprocPoolSortLocalTest.test_expand) ... ok test_expand_after_reload (integration.environment_multiproc_test.MultiprocPoolSortLocalTest.test_expand_after_reload) ... ok test_f_iter_runs (integration.environment_multiproc_test.MultiprocPoolSortLocalTest.test_f_iter_runs) ... ok test_f_iter_runs_auto_load (integration.environment_multiproc_test.MultiprocPoolSortLocalTest.test_f_iter_runs_auto_load) ... ok test_graceful_exit (integration.environment_multiproc_test.MultiprocPoolSortLocalTest.test_graceful_exit) ... You killed the process(es) via `SIGINT` (`CTRL+C`). I am trying to exit gracefully. Using `SIGINT` (`CTRL+C`) again will cause an immediate exit. You killed the process(es) via `SIGINT` (`CTRL+C`). I am trying to exit gracefully. Using `SIGINT` (`CTRL+C`) again will cause an immediate exit. You killed the process(es) via `SIGINT` (`CTRL+C`). I am trying to exit gracefully. Using `SIGINT` (`CTRL+C`) again will cause an immediate exit. You killed the process(es) via `SIGINT` (`CTRL+C`). I am trying to exit gracefully. Using `SIGINT` (`CTRL+C`) again will cause an immediate exit. MainProcess 2024-11-14 17:54:09,758 pypet.environment.Environment ERROR Following runs of trajectory `T__test_graceful_exit__40064` did NOT complete: `run_00000008, run_00000009, run_00000010, run_00000011, run_00000012, run_00000013, run_00000014, run_00000015, run_00000016, run_00000017, run_00000018, run_00000019, run_00000020, run_00000021, run_00000022, run_00000023, run_00000024, run_00000025, run_00000026, run_00000027, run_00000028, run_00000029, run_00000030, run_00000031, run_00000032, run_00000033, run_00000034, run_00000035, run_00000036, run_00000037, run_00000038, run_00000039, run_00000040, run_00000041, run_00000042, run_00000043, run_00000044, run_00000045, run_00000046, run_00000047, run_00000048` ok test_if_results_are_sorted_correctly (integration.environment_multiproc_test.MultiprocPoolSortLocalTest.test_if_results_are_sorted_correctly) ... ok test_if_results_are_sorted_correctly_manual_runs (integration.environment_multiproc_test.MultiprocPoolSortLocalTest.test_if_results_are_sorted_correctly_manual_runs) ... ok test_if_results_are_sorted_correctly_using_map (integration.environment_multiproc_test.MultiprocPoolSortLocalTest.test_if_results_are_sorted_correctly_using_map) ... ok test_expand (integration.environment_multiproc_test.MultiprocPoolSortLockTest.test_expand) ... ok test_expand_after_reload (integration.environment_multiproc_test.MultiprocPoolSortLockTest.test_expand_after_reload) ... ok test_f_iter_runs (integration.environment_multiproc_test.MultiprocPoolSortLockTest.test_f_iter_runs) ... ok test_f_iter_runs_auto_load (integration.environment_multiproc_test.MultiprocPoolSortLockTest.test_f_iter_runs_auto_load) ... ok test_graceful_exit (integration.environment_multiproc_test.MultiprocPoolSortLockTest.test_graceful_exit) ... You killed the process(es) via `SIGINT` (`CTRL+C`). I am trying to exit gracefully. Using `SIGINT` (`CTRL+C`) again will cause an immediate exit. You killed the process(es) via `SIGINT` (`CTRL+C`). I am trying to exit gracefully. Using `SIGINT` (`CTRL+C`) again will cause an immediate exit. You killed the process(es) via `SIGINT` (`CTRL+C`). I am trying to exit gracefully. Using `SIGINT` (`CTRL+C`) again will cause an immediate exit. You killed the process(es) via `SIGINT` (`CTRL+C`). I am trying to exit gracefully. Using `SIGINT` (`CTRL+C`) again will cause an immediate exit. MainProcess 2024-11-14 17:54:14,086 pypet.environment.Environment ERROR Following runs of trajectory `T__test_graceful_exit__77892` did NOT complete: `run_00000008, run_00000009, run_00000010, run_00000011, run_00000012, run_00000013, run_00000014, run_00000015, run_00000016, run_00000017, run_00000018, run_00000019, run_00000020, run_00000021, run_00000022, run_00000023, run_00000024, run_00000025, run_00000026, run_00000027, run_00000028, run_00000029, run_00000030, run_00000031, run_00000032, run_00000033, run_00000034, run_00000035, run_00000036, run_00000037, run_00000038, run_00000039, run_00000040, run_00000041, run_00000042, run_00000043, run_00000044, run_00000045, run_00000046, run_00000047, run_00000048` ok test_if_results_are_sorted_correctly (integration.environment_multiproc_test.MultiprocPoolSortLockTest.test_if_results_are_sorted_correctly) ... ok test_if_results_are_sorted_correctly_manual_runs (integration.environment_multiproc_test.MultiprocPoolSortLockTest.test_if_results_are_sorted_correctly_manual_runs) ... ok test_if_results_are_sorted_correctly_using_map (integration.environment_multiproc_test.MultiprocPoolSortLockTest.test_if_results_are_sorted_correctly_using_map) ... ok test_expand (integration.environment_multiproc_test.MultiprocPoolSortPipeTest.test_expand) ... ok test_expand_after_reload (integration.environment_multiproc_test.MultiprocPoolSortPipeTest.test_expand_after_reload) ... ok test_f_iter_runs (integration.environment_multiproc_test.MultiprocPoolSortPipeTest.test_f_iter_runs) ... ok test_f_iter_runs_auto_load (integration.environment_multiproc_test.MultiprocPoolSortPipeTest.test_f_iter_runs_auto_load) ... ok test_graceful_exit (integration.environment_multiproc_test.MultiprocPoolSortPipeTest.test_graceful_exit) ... You killed the process(es) via `SIGINT` (`CTRL+C`). I am trying to exit gracefully. Using `SIGINT` (`CTRL+C`) again will cause an immediate exit. You killed the process(es) via `SIGINT` (`CTRL+C`). I am trying to exit gracefully. Using `SIGINT` (`CTRL+C`) again will cause an immediate exit. You killed the process(es) via `SIGINT` (`CTRL+C`). I am trying to exit gracefully. Using `SIGINT` (`CTRL+C`) again will cause an immediate exit. You killed the process(es) via `SIGINT` (`CTRL+C`). I am trying to exit gracefully. Using `SIGINT` (`CTRL+C`) again will cause an immediate exit. MainProcess 2024-11-14 17:54:18,460 pypet.environment.Environment ERROR Following runs of trajectory `T__test_graceful_exit__90725` did NOT complete: `run_00000007, run_00000008, run_00000009, run_00000010, run_00000011, run_00000012, run_00000013, run_00000014, run_00000016, run_00000017, run_00000018, run_00000019, run_00000020, run_00000021, run_00000022, run_00000023, run_00000024, run_00000025, run_00000026, run_00000027, run_00000028, run_00000029, run_00000030, run_00000031, run_00000032, run_00000033, run_00000034, run_00000035, run_00000036, run_00000037, run_00000038, run_00000039, run_00000040, run_00000041, run_00000042, run_00000043, run_00000044, run_00000045, run_00000046, run_00000047, run_00000048` ok test_if_results_are_sorted_correctly (integration.environment_multiproc_test.MultiprocPoolSortPipeTest.test_if_results_are_sorted_correctly) ... ok test_if_results_are_sorted_correctly_manual_runs (integration.environment_multiproc_test.MultiprocPoolSortPipeTest.test_if_results_are_sorted_correctly_manual_runs) ... ok test_if_results_are_sorted_correctly_using_map (integration.environment_multiproc_test.MultiprocPoolSortPipeTest.test_if_results_are_sorted_correctly_using_map) ... ok test_expand (integration.environment_multiproc_test.MultiprocPoolSortQueueTest.test_expand) ... ok test_expand_after_reload (integration.environment_multiproc_test.MultiprocPoolSortQueueTest.test_expand_after_reload) ... ok test_f_iter_runs (integration.environment_multiproc_test.MultiprocPoolSortQueueTest.test_f_iter_runs) ... ok test_f_iter_runs_auto_load (integration.environment_multiproc_test.MultiprocPoolSortQueueTest.test_f_iter_runs_auto_load) ... ok test_graceful_exit (integration.environment_multiproc_test.MultiprocPoolSortQueueTest.test_graceful_exit) ... You killed the process(es) via `SIGINT` (`CTRL+C`). I am trying to exit gracefully. Using `SIGINT` (`CTRL+C`) again will cause an immediate exit. You killed the process(es) via `SIGINT` (`CTRL+C`). I am trying to exit gracefully. Using `SIGINT` (`CTRL+C`) again will cause an immediate exit. You killed the process(es) via `SIGINT` (`CTRL+C`). I am trying to exit gracefully. Using `SIGINT` (`CTRL+C`) again will cause an immediate exit. MainProcess 2024-11-14 17:54:22,919 pypet.environment.Environment ERROR Following runs of trajectory `T__test_graceful_exit__15463` did NOT complete: `run_00000006, run_00000007, run_00000008, run_00000009, run_00000010, run_00000011, run_00000012, run_00000013, run_00000015, run_00000016, run_00000017, run_00000018, run_00000019, run_00000020, run_00000021, run_00000022, run_00000023, run_00000024, run_00000025, run_00000026, run_00000027, run_00000028, run_00000029, run_00000030, run_00000031, run_00000032, run_00000033, run_00000034, run_00000035, run_00000036, run_00000037, run_00000038, run_00000039, run_00000040, run_00000041, run_00000042, run_00000043, run_00000044, run_00000045, run_00000046, run_00000047, run_00000048` ok test_if_results_are_sorted_correctly (integration.environment_multiproc_test.MultiprocPoolSortQueueTest.test_if_results_are_sorted_correctly) ... ok test_if_results_are_sorted_correctly_manual_runs (integration.environment_multiproc_test.MultiprocPoolSortQueueTest.test_if_results_are_sorted_correctly_manual_runs) ... ok test_if_results_are_sorted_correctly_using_map (integration.environment_multiproc_test.MultiprocPoolSortQueueTest.test_if_results_are_sorted_correctly_using_map) ... ok test_NOT_purge_duplicate_comments (integration.environment_scoop_test.MultiprocSCOOPNetlockTest.test_NOT_purge_duplicate_comments) ... skipped 'Only makes sense if scoop is installed' test_a_large_run (integration.environment_scoop_test.MultiprocSCOOPNetlockTest.test_a_large_run) ... skipped 'Only makes sense if scoop is installed' test_errors (integration.environment_scoop_test.MultiprocSCOOPNetlockTest.test_errors) ... skipped 'Only makes sense if scoop is installed' test_expand (integration.environment_scoop_test.MultiprocSCOOPNetlockTest.test_expand) ... skipped 'Only makes sense if scoop is installed' test_expand_after_reload (integration.environment_scoop_test.MultiprocSCOOPNetlockTest.test_expand_after_reload) ... skipped 'Only makes sense if scoop is installed' test_file_overwriting (integration.environment_scoop_test.MultiprocSCOOPNetlockTest.test_file_overwriting) ... skipped 'Only makes sense if scoop is installed' test_just_one_run (integration.environment_scoop_test.MultiprocSCOOPNetlockTest.test_just_one_run) ... skipped 'Only makes sense if scoop is installed' test_niceness (integration.environment_scoop_test.MultiprocSCOOPNetlockTest.test_niceness) ... skipped 'Only makes sense if scoop is installed' test_purge_duplicate_comments (integration.environment_scoop_test.MultiprocSCOOPNetlockTest.test_purge_duplicate_comments) ... skipped 'Only makes sense if scoop is installed' test_run (integration.environment_scoop_test.MultiprocSCOOPNetlockTest.test_run) ... skipped 'Only makes sense if scoop is installed' test_run_complex (integration.environment_scoop_test.MultiprocSCOOPNetlockTest.test_run_complex) ... skipped 'Only makes sense if scoop is installed' test_store_form_tuple (integration.environment_scoop_test.MultiprocSCOOPNetlockTest.test_store_form_tuple) ... skipped 'Only makes sense if scoop is installed' test_store_single_group (integration.environment_scoop_test.MultiprocSCOOPNetlockTest.test_store_single_group) ... skipped 'Only makes sense if scoop is installed' test_switch_ON_large_tables (integration.environment_scoop_test.MultiprocSCOOPNetlockTest.test_switch_ON_large_tables) ... skipped 'Only makes sense if scoop is installed' test_switch_off_all_tables (integration.environment_scoop_test.MultiprocSCOOPNetlockTest.test_switch_off_all_tables) ... skipped 'Only makes sense if scoop is installed' test_switch_on_all_comments (integration.environment_scoop_test.MultiprocSCOOPNetlockTest.test_switch_on_all_comments) ... skipped 'Only makes sense if scoop is installed' test_time_display_of_loading (integration.environment_scoop_test.MultiprocSCOOPNetlockTest.test_time_display_of_loading) ... skipped 'Only makes sense if scoop is installed' test_two_runs (integration.environment_scoop_test.MultiprocSCOOPNetlockTest.test_two_runs) ... skipped 'Only makes sense if scoop is installed' test_NOT_purge_duplicate_comments (integration.environment_scoop_test.MultiprocSCOOPNetqueueTest.test_NOT_purge_duplicate_comments) ... skipped 'Only makes sense if scoop is installed and running' test_a_large_run (integration.environment_scoop_test.MultiprocSCOOPNetqueueTest.test_a_large_run) ... skipped 'Only makes sense if scoop is installed and running' test_errors (integration.environment_scoop_test.MultiprocSCOOPNetqueueTest.test_errors) ... skipped 'Only makes sense if scoop is installed and running' test_expand (integration.environment_scoop_test.MultiprocSCOOPNetqueueTest.test_expand) ... skipped 'Only makes sense if scoop is installed and running' test_expand_after_reload (integration.environment_scoop_test.MultiprocSCOOPNetqueueTest.test_expand_after_reload) ... skipped 'Only makes sense if scoop is installed and running' test_file_overwriting (integration.environment_scoop_test.MultiprocSCOOPNetqueueTest.test_file_overwriting) ... skipped 'Only makes sense if scoop is installed and running' test_just_one_run (integration.environment_scoop_test.MultiprocSCOOPNetqueueTest.test_just_one_run) ... skipped 'Only makes sense if scoop is installed and running' test_niceness (integration.environment_scoop_test.MultiprocSCOOPNetqueueTest.test_niceness) ... skipped 'Only makes sense if scoop is installed and running' test_purge_duplicate_comments (integration.environment_scoop_test.MultiprocSCOOPNetqueueTest.test_purge_duplicate_comments) ... skipped 'Only makes sense if scoop is installed and running' test_run (integration.environment_scoop_test.MultiprocSCOOPNetqueueTest.test_run) ... skipped 'Only makes sense if scoop is installed and running' test_run_complex (integration.environment_scoop_test.MultiprocSCOOPNetqueueTest.test_run_complex) ... skipped 'Only makes sense if scoop is installed and running' test_store_form_tuple (integration.environment_scoop_test.MultiprocSCOOPNetqueueTest.test_store_form_tuple) ... skipped 'Only makes sense if scoop is installed and running' test_store_single_group (integration.environment_scoop_test.MultiprocSCOOPNetqueueTest.test_store_single_group) ... skipped 'Only makes sense if scoop is installed and running' test_switch_ON_large_tables (integration.environment_scoop_test.MultiprocSCOOPNetqueueTest.test_switch_ON_large_tables) ... skipped 'Only makes sense if scoop is installed and running' test_switch_off_all_tables (integration.environment_scoop_test.MultiprocSCOOPNetqueueTest.test_switch_off_all_tables) ... skipped 'Only makes sense if scoop is installed and running' test_switch_on_all_comments (integration.environment_scoop_test.MultiprocSCOOPNetqueueTest.test_switch_on_all_comments) ... skipped 'Only makes sense if scoop is installed and running' test_time_display_of_loading (integration.environment_scoop_test.MultiprocSCOOPNetqueueTest.test_time_display_of_loading) ... skipped 'Only makes sense if scoop is installed and running' test_two_runs (integration.environment_scoop_test.MultiprocSCOOPNetqueueTest.test_two_runs) ... skipped 'Only makes sense if scoop is installed and running' test_expand (integration.environment_scoop_test.MultiprocSCOOPSortLocalTest.test_expand) ... skipped 'Only makes sense if scoop is installed' test_expand_after_reload (integration.environment_scoop_test.MultiprocSCOOPSortLocalTest.test_expand_after_reload) ... skipped 'Only makes sense if scoop is installed' test_f_iter_runs (integration.environment_scoop_test.MultiprocSCOOPSortLocalTest.test_f_iter_runs) ... skipped 'Only makes sense if scoop is installed' test_f_iter_runs_auto_load (integration.environment_scoop_test.MultiprocSCOOPSortLocalTest.test_f_iter_runs_auto_load) ... skipped 'Only makes sense if scoop is installed' test_graceful_exit (integration.environment_scoop_test.MultiprocSCOOPSortLocalTest.test_graceful_exit) ... skipped 'Only makes sense if scoop is installed' test_if_results_are_sorted_correctly (integration.environment_scoop_test.MultiprocSCOOPSortLocalTest.test_if_results_are_sorted_correctly) ... skipped 'Only makes sense if scoop is installed' test_if_results_are_sorted_correctly_manual_runs (integration.environment_scoop_test.MultiprocSCOOPSortLocalTest.test_if_results_are_sorted_correctly_manual_runs) ... skipped 'Only makes sense if scoop is installed' test_if_results_are_sorted_correctly_using_map (integration.environment_scoop_test.MultiprocSCOOPSortLocalTest.test_if_results_are_sorted_correctly_using_map) ... skipped 'Only makes sense if scoop is installed' test_giant_matrices (integration.shared_data_test.MultiprocStorageLockTest.test_giant_matrices) ... ok test_loading_run (integration.shared_data_test.MultiprocStorageLockTest.test_loading_run) ... ok test_run (integration.shared_data_test.MultiprocStorageLockTest.test_run) ... ok test_run_large (integration.shared_data_test.MultiprocStorageLockTest.test_run_large) ... ok test_giant_matrices (integration.shared_data_test.MultiprocStorageNetlockTest.test_giant_matrices) ... skipped 'Can only be run with zmq' test_loading_run (integration.shared_data_test.MultiprocStorageNetlockTest.test_loading_run) ... skipped 'Can only be run with zmq' test_run (integration.shared_data_test.MultiprocStorageNetlockTest.test_run) ... skipped 'Can only be run with zmq' test_run_large (integration.shared_data_test.MultiprocStorageNetlockTest.test_run_large) ... skipped 'Can only be run with zmq' test_giant_matrices (integration.shared_data_test.MultiprocStorageNoPoolLockTest.test_giant_matrices) ... ok test_loading_run (integration.shared_data_test.MultiprocStorageNoPoolLockTest.test_loading_run) ... ok test_run (integration.shared_data_test.MultiprocStorageNoPoolLockTest.test_run) ... ok test_run_large (integration.shared_data_test.MultiprocStorageNoPoolLockTest.test_run_large) ... ok test_v_property (unittests.utils_test.NamingSchemeTest.test_v_property) ... ok test_v_property_slots (unittests.utils_test.NamingSchemeTest.test_v_property_slots) ... ok test_cannot_expand_and_not_explore_throwing_type_error (pypet.tests.unittests.parameter_test.ParameterTest.test_cannot_expand_and_not_explore_throwing_type_error) ... ok test_equal_values (pypet.tests.unittests.parameter_test.ParameterTest.test_equal_values) ... ok test_expanding (pypet.tests.unittests.parameter_test.ParameterTest.test_expanding) ... ok test_expanding_type_error (pypet.tests.unittests.parameter_test.ParameterTest.test_expanding_type_error) ... ok test_exploration (pypet.tests.unittests.parameter_test.ParameterTest.test_exploration) ... ok test_get_data (pypet.tests.unittests.parameter_test.ParameterTest.test_get_data) ... ok test_get_item (pypet.tests.unittests.parameter_test.ParameterTest.test_get_item) ... ok test_meta_settings (pypet.tests.unittests.parameter_test.ParameterTest.test_meta_settings) ... ok test_param_accepts_not_unsupported_data (pypet.tests.unittests.parameter_test.ParameterTest.test_param_accepts_not_unsupported_data) ... ok test_parameter_access_throws_ValueError (pypet.tests.unittests.parameter_test.ParameterTest.test_parameter_access_throws_ValueError) ... ok test_parameter_locking (pypet.tests.unittests.parameter_test.ParameterTest.test_parameter_locking) ... ok test_pickling_with_mocking_multiprocessing (pypet.tests.unittests.parameter_test.ParameterTest.test_pickling_with_mocking_multiprocessing) ... ok test_pickling_without_multiprocessing (pypet.tests.unittests.parameter_test.ParameterTest.test_pickling_without_multiprocessing) ... ok test_rename (pypet.tests.unittests.parameter_test.ParameterTest.test_rename) ... ok test_resizing_and_deletion (pypet.tests.unittests.parameter_test.ParameterTest.test_resizing_and_deletion) ... ok test_storage_and_loading (pypet.tests.unittests.parameter_test.ParameterTest.test_storage_and_loading) ... ok test_store_load_with_hdf5 (pypet.tests.unittests.parameter_test.ParameterTest.test_store_load_with_hdf5) ... ok test_store_load_with_hdf5_no_data (pypet.tests.unittests.parameter_test.ParameterTest.test_store_load_with_hdf5_no_data) ... ok test_the_insertion_made_implicetly_in_setUp (pypet.tests.unittests.parameter_test.ParameterTest.test_the_insertion_made_implicetly_in_setUp) ... ok test_type_error_for_exploring_if_range_does_not_match (pypet.tests.unittests.parameter_test.ParameterTest.test_type_error_for_exploring_if_range_does_not_match) ... ok test_type_error_for_get_item (pypet.tests.unittests.parameter_test.ParameterTest.test_type_error_for_get_item) ... ok test_type_error_for_not_supported_data (pypet.tests.unittests.parameter_test.ParameterTest.test_type_error_for_not_supported_data) ... ok test_type_error_for_shrink (pypet.tests.unittests.parameter_test.ParameterTest.test_type_error_for_shrink) ... ok test_values_of_same_type (pypet.tests.unittests.parameter_test.ParameterTest.test_values_of_same_type) ... ok test_cannot_expand_and_not_explore_throwing_type_error (unittests.parameter_test.PickleParameterTest.test_cannot_expand_and_not_explore_throwing_type_error) ... ok test_equal_values (unittests.parameter_test.PickleParameterTest.test_equal_values) ... ok test_expanding (unittests.parameter_test.PickleParameterTest.test_expanding) ... ok test_expanding_type_error (unittests.parameter_test.PickleParameterTest.test_expanding_type_error) ... ok test_exploration (unittests.parameter_test.PickleParameterTest.test_exploration) ... ok test_get_data (unittests.parameter_test.PickleParameterTest.test_get_data) ... ok test_get_item (unittests.parameter_test.PickleParameterTest.test_get_item) ... ok test_meta_settings (unittests.parameter_test.PickleParameterTest.test_meta_settings) ... ok test_param_accepts_not_unsupported_data (unittests.parameter_test.PickleParameterTest.test_param_accepts_not_unsupported_data) ... ok test_parameter_access_throws_ValueError (unittests.parameter_test.PickleParameterTest.test_parameter_access_throws_ValueError) ... ok test_parameter_locking (unittests.parameter_test.PickleParameterTest.test_parameter_locking) ... ok test_pickling_with_mocking_multiprocessing (unittests.parameter_test.PickleParameterTest.test_pickling_with_mocking_multiprocessing) ... ok test_pickling_without_multiprocessing (unittests.parameter_test.PickleParameterTest.test_pickling_without_multiprocessing) ... ok test_rename (unittests.parameter_test.PickleParameterTest.test_rename) ... ok test_resizing_and_deletion (unittests.parameter_test.PickleParameterTest.test_resizing_and_deletion) ... ok test_storage_and_loading (unittests.parameter_test.PickleParameterTest.test_storage_and_loading) ... ok test_store_load_with_hdf5 (unittests.parameter_test.PickleParameterTest.test_store_load_with_hdf5) ... ok test_store_load_with_hdf5_no_data (unittests.parameter_test.PickleParameterTest.test_store_load_with_hdf5_no_data) ... ok test_the_insertion_made_implicetly_in_setUp (unittests.parameter_test.PickleParameterTest.test_the_insertion_made_implicetly_in_setUp) ... ok test_type_error_for_exploring_if_range_does_not_match (unittests.parameter_test.PickleParameterTest.test_type_error_for_exploring_if_range_does_not_match) ... ok test_type_error_for_get_item (unittests.parameter_test.PickleParameterTest.test_type_error_for_get_item) ... ok test_type_error_for_not_supported_data (unittests.parameter_test.PickleParameterTest.test_type_error_for_not_supported_data) ... ok test_type_error_for_shrink (unittests.parameter_test.PickleParameterTest.test_type_error_for_shrink) ... ok test_values_of_same_type (unittests.parameter_test.PickleParameterTest.test_values_of_same_type) ... ok test_Attribute_error_for_get_item (unittests.parameter_test.PickleResultTest.test_Attribute_error_for_get_item) ... ok test_contains (unittests.parameter_test.PickleResultTest.test_contains) ... ok test_deletion (unittests.parameter_test.PickleResultTest.test_deletion) ... ok test_deletion_throws_error_if_item_not_there (unittests.parameter_test.PickleResultTest.test_deletion_throws_error_if_item_not_there) ... ok test_dir (unittests.parameter_test.PickleResultTest.test_dir) ... ok test_emptying (unittests.parameter_test.PickleResultTest.test_emptying) ... ok test_f_get_errors (unittests.parameter_test.PickleResultTest.test_f_get_errors) ... ok test_f_get_many_items (unittests.parameter_test.PickleResultTest.test_f_get_many_items) ... ok test_f_to_dict_no_copy (unittests.parameter_test.PickleResultTest.test_f_to_dict_no_copy) ... ok test_get_data (unittests.parameter_test.PickleResultTest.test_get_data) ... ok test_get_item (unittests.parameter_test.PickleResultTest.test_get_item) ... ok test_getattr_and_setattr (unittests.parameter_test.PickleResultTest.test_getattr_and_setattr) ... ok test_iter (unittests.parameter_test.PickleResultTest.test_iter) ... ok test_meta_settings (unittests.parameter_test.PickleResultTest.test_meta_settings) ... ok test_natural_naming (unittests.parameter_test.PickleResultTest.test_natural_naming) ... ok test_pickling (unittests.parameter_test.PickleResultTest.test_pickling) ... ok test_reject_outer_data_structure (unittests.parameter_test.PickleResultTest.test_reject_outer_data_structure) ... ok test_rename (unittests.parameter_test.PickleResultTest.test_rename) ... ok test_set_item_via_number (unittests.parameter_test.PickleResultTest.test_set_item_via_number) ... ok test_set_numbering (unittests.parameter_test.PickleResultTest.test_set_numbering) ... ok test_storage_and_loading (unittests.parameter_test.PickleResultTest.test_storage_and_loading) ... ok test_store_load_with_hdf5 (unittests.parameter_test.PickleResultTest.test_store_load_with_hdf5) ... ok test_string_representation (unittests.parameter_test.PickleResultTest.test_string_representation) ... ok test_the_insertion_made_implicetly_in_setUp (unittests.parameter_test.PickleResultTest.test_the_insertion_made_implicetly_in_setUp) ... ok test_warning (unittests.parameter_test.PickleResultTest.test_warning) ... ok [====================]100.0%ok [====================]100.0%ok test_progressbar_logging (unittests.utils_test.ProgressBarTest.test_progressbar_logging) ... ok [====================]100.0%ok [====================]100.0%ok test_sort (unittests.utils_test.ResultSortFuncTest.test_sort) ... ok test_sort_with_index (unittests.utils_test.ResultSortFuncTest.test_sort_with_index) ... ok test_expand (pypet.tests.integration.environment_test.ResultSortTest.test_expand) ... ok test_expand_after_reload (pypet.tests.integration.environment_test.ResultSortTest.test_expand_after_reload) ... ok test_f_iter_runs (pypet.tests.integration.environment_test.ResultSortTest.test_f_iter_runs) ... ok test_f_iter_runs_auto_load (pypet.tests.integration.environment_test.ResultSortTest.test_f_iter_runs_auto_load) ... ok test_graceful_exit (pypet.tests.integration.environment_test.ResultSortTest.test_graceful_exit) ... You killed the process(es) via `SIGINT` (`CTRL+C`). I am trying to exit gracefully. Using `SIGINT` (`CTRL+C`) again will cause an immediate exit. MainProcess 2024-11-14 17:55:07,054 pypet.environment.Environment ERROR Following runs of trajectory `T__test_graceful_exit__27326` did NOT complete: `run_00000005, run_00000006, run_00000007, run_00000008, run_00000009, run_00000010, run_00000011, run_00000012, run_00000013, run_00000014, run_00000015, run_00000016, run_00000017, run_00000018, run_00000019, run_00000020, run_00000021, run_00000022, run_00000023, run_00000024, run_00000025, run_00000026, run_00000027, run_00000028, run_00000029, run_00000030, run_00000031, run_00000032, run_00000033, run_00000034, run_00000035, run_00000036, run_00000037, run_00000038, run_00000039, run_00000040, run_00000041, run_00000042, run_00000043, run_00000044, run_00000045, run_00000046, run_00000047, run_00000048` ok test_if_results_are_sorted_correctly (pypet.tests.integration.environment_test.ResultSortTest.test_if_results_are_sorted_correctly) ... ok test_if_results_are_sorted_correctly_manual_runs (pypet.tests.integration.environment_test.ResultSortTest.test_if_results_are_sorted_correctly_manual_runs) ... ok test_if_results_are_sorted_correctly_using_map (pypet.tests.integration.environment_test.ResultSortTest.test_if_results_are_sorted_correctly_using_map) ... ok test_Attribute_error_for_get_item (pypet.tests.unittests.parameter_test.ResultTest.test_Attribute_error_for_get_item) ... ok test_contains (pypet.tests.unittests.parameter_test.ResultTest.test_contains) ... ok test_deletion (pypet.tests.unittests.parameter_test.ResultTest.test_deletion) ... ok test_deletion_throws_error_if_item_not_there (pypet.tests.unittests.parameter_test.ResultTest.test_deletion_throws_error_if_item_not_there) ... ok test_dir (pypet.tests.unittests.parameter_test.ResultTest.test_dir) ... ok test_emptying (pypet.tests.unittests.parameter_test.ResultTest.test_emptying) ... ok test_f_get_errors (pypet.tests.unittests.parameter_test.ResultTest.test_f_get_errors) ... ok test_f_get_many_items (pypet.tests.unittests.parameter_test.ResultTest.test_f_get_many_items) ... ok test_f_to_dict_no_copy (pypet.tests.unittests.parameter_test.ResultTest.test_f_to_dict_no_copy) ... ok test_get_data (pypet.tests.unittests.parameter_test.ResultTest.test_get_data) ... ok test_get_item (pypet.tests.unittests.parameter_test.ResultTest.test_get_item) ... ok test_getattr_and_setattr (pypet.tests.unittests.parameter_test.ResultTest.test_getattr_and_setattr) ... ok test_iter (pypet.tests.unittests.parameter_test.ResultTest.test_iter) ... ok test_meta_settings (pypet.tests.unittests.parameter_test.ResultTest.test_meta_settings) ... ok test_natural_naming (pypet.tests.unittests.parameter_test.ResultTest.test_natural_naming) ... ok test_pickling (pypet.tests.unittests.parameter_test.ResultTest.test_pickling) ... ok test_reject_outer_data_structure (pypet.tests.unittests.parameter_test.ResultTest.test_reject_outer_data_structure) ... ok test_rename (pypet.tests.unittests.parameter_test.ResultTest.test_rename) ... ok test_set_item_via_number (pypet.tests.unittests.parameter_test.ResultTest.test_set_item_via_number) ... ok test_set_numbering (pypet.tests.unittests.parameter_test.ResultTest.test_set_numbering) ... ok test_storage_and_loading (pypet.tests.unittests.parameter_test.ResultTest.test_storage_and_loading) ... ok test_store_load_with_hdf5 (pypet.tests.unittests.parameter_test.ResultTest.test_store_load_with_hdf5) ... ok test_string_representation (pypet.tests.unittests.parameter_test.ResultTest.test_string_representation) ... ok test_the_insertion_made_implicetly_in_setUp (pypet.tests.unittests.parameter_test.ResultTest.test_the_insertion_made_implicetly_in_setUp) ... ok test_warning (pypet.tests.unittests.parameter_test.ResultTest.test_warning) ... ok test_fail_after_n_tries (unittests.utils_test.RetryTest.test_fail_after_n_tries) ... I could not execute `RaisesNTypeErrors` with args () and kwargs {}, starting next try. Traceback (most recent call last): File "/builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/utils/decorators.py", line 235, in new_func result = func(*args, **kwargs) File "/builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/tests/unittests/utils_test.py", line 42, in __call__ raise TypeError('Nope!') TypeError: Nope! ok test_succeeds_after_retries (unittests.utils_test.RetryTest.test_succeeds_after_retries) ... ok test_array_getenum (unittests.shared_data_test.SharedArrayTest.test_array_getenum) ... Failed storing `results.shared_data` Failed storing `results.shared_data` ok test_array_getitem (unittests.shared_data_test.SharedArrayTest.test_array_getitem) ... ok test_array_iter (unittests.shared_data_test.SharedArrayTest.test_array_iter) ... ok test_array_iterrows (unittests.shared_data_test.SharedArrayTest.test_array_iterrows) ... ok test_array_len (unittests.shared_data_test.SharedArrayTest.test_array_len) ... ok test_array_read (unittests.shared_data_test.SharedArrayTest.test_array_read) ... ok test_array_setitem (unittests.shared_data_test.SharedArrayTest.test_array_setitem) ... ok test_table_append (unittests.shared_data_test.SharedTableTest.test_table_append) ... ok test_table_col (unittests.shared_data_test.SharedTableTest.test_table_col) ... ok test_table_flush (unittests.shared_data_test.SharedTableTest.test_table_flush) ... ok test_table_getitem (unittests.shared_data_test.SharedTableTest.test_table_getitem) ... ok test_table_iterrows (unittests.shared_data_test.SharedTableTest.test_table_iterrows) ... ok test_table_read (unittests.shared_data_test.SharedTableTest.test_table_read) ... ok test_table_setitem (unittests.shared_data_test.SharedTableTest.test_table_setitem) ... ok test_table_where (unittests.shared_data_test.SharedTableTest.test_table_where) ... ok test_make_default_file_when_giving_directory_without_slash (integration.environment_test.SimpleEnvironmentTest.test_make_default_file_when_giving_directory_without_slash) ... MainProcess pypet.storageservice.HDF5StorageService INFO I will use the hdf5 file `/tmp/tmp_pypet_tests/trajectory.hdf5`. MainProcess pypet.environment.Environment INFO Environment initialized. ok test_queue (unittests.trajectory_test.SingleRunQueueTest.test_queue) ... ok test_adding_derived_parameter_and_result (unittests.trajectory_test.SingleRunTest.test_adding_derived_parameter_and_result) ... ok test_auto_prepend (unittests.trajectory_test.SingleRunTest.test_auto_prepend) ... ok test_different_dir (unittests.trajectory_test.SingleRunTest.test_different_dir) ... ok test_if_single_run_can_be_pickled (unittests.trajectory_test.SingleRunTest.test_if_single_run_can_be_pickled) ... ok test_standard_change_param_change (unittests.trajectory_test.SingleRunTest.test_standard_change_param_change) ... ok test_all_slots (unittests.utils_test.SlotsTest.test_all_slots) ... ok test_pickling (unittests.utils_test.SlotsTest.test_pickling) ... ok test_cannot_expand_and_not_explore_throwing_type_error (unittests.parameter_test.SparseParameterTest.test_cannot_expand_and_not_explore_throwing_type_error) ... ok test_equal_values (unittests.parameter_test.SparseParameterTest.test_equal_values) ... ok test_expanding (unittests.parameter_test.SparseParameterTest.test_expanding) ... ok test_expanding_type_error (unittests.parameter_test.SparseParameterTest.test_expanding_type_error) ... ok test_exploration (unittests.parameter_test.SparseParameterTest.test_exploration) ... ok test_get_data (unittests.parameter_test.SparseParameterTest.test_get_data) ... ok test_get_item (unittests.parameter_test.SparseParameterTest.test_get_item) ... ok test_meta_settings (unittests.parameter_test.SparseParameterTest.test_meta_settings) ... ok test_param_accepts_not_unsupported_data (unittests.parameter_test.SparseParameterTest.test_param_accepts_not_unsupported_data) ... ok test_parameter_access_throws_ValueError (unittests.parameter_test.SparseParameterTest.test_parameter_access_throws_ValueError) ... ok test_parameter_locking (unittests.parameter_test.SparseParameterTest.test_parameter_locking) ... ok test_pickling_with_mocking_multiprocessing (unittests.parameter_test.SparseParameterTest.test_pickling_with_mocking_multiprocessing) ... ok test_pickling_without_multiprocessing (unittests.parameter_test.SparseParameterTest.test_pickling_without_multiprocessing) ... ok test_rename (unittests.parameter_test.SparseParameterTest.test_rename) ... ok test_resizing_and_deletion (unittests.parameter_test.SparseParameterTest.test_resizing_and_deletion) ... ok test_storage_and_loading (unittests.parameter_test.SparseParameterTest.test_storage_and_loading) ... ok test_store_load_with_hdf5 (unittests.parameter_test.SparseParameterTest.test_store_load_with_hdf5) ... ok test_store_load_with_hdf5_no_data (unittests.parameter_test.SparseParameterTest.test_store_load_with_hdf5_no_data) ... ok test_the_insertion_made_implicetly_in_setUp (unittests.parameter_test.SparseParameterTest.test_the_insertion_made_implicetly_in_setUp) ... ok test_type_error_for_exploring_if_range_does_not_match (unittests.parameter_test.SparseParameterTest.test_type_error_for_exploring_if_range_does_not_match) ... ok test_type_error_for_get_item (unittests.parameter_test.SparseParameterTest.test_type_error_for_get_item) ... ok test_type_error_for_not_supported_data (unittests.parameter_test.SparseParameterTest.test_type_error_for_not_supported_data) ... ok test_type_error_for_shrink (unittests.parameter_test.SparseParameterTest.test_type_error_for_shrink) ... ok test_values_of_same_type (unittests.parameter_test.SparseParameterTest.test_values_of_same_type) ... ok test_Attribute_error_for_get_item (unittests.parameter_test.SparseResultTest.test_Attribute_error_for_get_item) ... ok test_contains (unittests.parameter_test.SparseResultTest.test_contains) ... ok test_deletion (unittests.parameter_test.SparseResultTest.test_deletion) ... ok test_deletion_throws_error_if_item_not_there (unittests.parameter_test.SparseResultTest.test_deletion_throws_error_if_item_not_there) ... ok test_dir (unittests.parameter_test.SparseResultTest.test_dir) ... ok test_emptying (unittests.parameter_test.SparseResultTest.test_emptying) ... ok test_f_get_errors (unittests.parameter_test.SparseResultTest.test_f_get_errors) ... ok test_f_get_many_items (unittests.parameter_test.SparseResultTest.test_f_get_many_items) ... ok test_f_to_dict_no_copy (unittests.parameter_test.SparseResultTest.test_f_to_dict_no_copy) ... ok test_get_data (unittests.parameter_test.SparseResultTest.test_get_data) ... ok test_get_item (unittests.parameter_test.SparseResultTest.test_get_item) ... ok test_getattr_and_setattr (unittests.parameter_test.SparseResultTest.test_getattr_and_setattr) ... ok test_illegal_naming (unittests.parameter_test.SparseResultTest.test_illegal_naming) ... ok test_iter (unittests.parameter_test.SparseResultTest.test_iter) ... ok test_meta_settings (unittests.parameter_test.SparseResultTest.test_meta_settings) ... ok test_natural_naming (unittests.parameter_test.SparseResultTest.test_natural_naming) ... ok test_pickling (unittests.parameter_test.SparseResultTest.test_pickling) ... ok test_reject_outer_data_structure (unittests.parameter_test.SparseResultTest.test_reject_outer_data_structure) ... ok test_rename (unittests.parameter_test.SparseResultTest.test_rename) ... ok test_set_item_via_number (unittests.parameter_test.SparseResultTest.test_set_item_via_number) ... ok test_set_numbering (unittests.parameter_test.SparseResultTest.test_set_numbering) ... ok test_storage_and_loading (unittests.parameter_test.SparseResultTest.test_storage_and_loading) ... ok test_store_load_with_hdf5 (unittests.parameter_test.SparseResultTest.test_store_load_with_hdf5) ... ok test_string_representation (unittests.parameter_test.SparseResultTest.test_string_representation) ... ok test_the_insertion_made_implicetly_in_setUp (unittests.parameter_test.SparseResultTest.test_the_insertion_made_implicetly_in_setUp) ... ok test_warning (unittests.parameter_test.SparseResultTest.test_warning) ... ok test_giant_matrices (integration.shared_data_test.StorageDataEnvironmentTest.test_giant_matrices) ... ok test_loading_run (integration.shared_data_test.StorageDataEnvironmentTest.test_loading_run) ... ok test_run (integration.shared_data_test.StorageDataEnvironmentTest.test_run) ... ok test_run_large (integration.shared_data_test.StorageDataEnvironmentTest.test_run_large) ... ok test_all_arrays (unittests.shared_data_test.StorageDataTrajectoryTests.test_all_arrays) ... ok test_compacting (unittests.shared_data_test.StorageDataTrajectoryTests.test_compacting) ... +=++=++=++=++=++=++=++=++=++=++=++=++=++=++=++=++=++=++=++=+ Recursive copy: True Applying filters: Filters(complevel=9, complib='zlib', shuffle=True, bitshuffle=False, fletcher32=False, least_significant_digit=None) Start copying /tmp/tmp_pypet_tests/hdf5compacting.hdf5:/ to /tmp/tmp_pypet_tests/hdf5compacting_tmp.hdf5:/ +=++=++=++=++=++=++=++=++=++=++=++=++=++=++=++=++=++=++=++=+ Groups copied: 23 , Leaves copied: 26 , Links copied: 0 , Hard links copied: 0 User attrs copied KBytes copied: 95.625 Time copying: 0.081 s (real) 0.080 s (cpu) 99% Copied nodes/sec: 604.0 Copied KB/s : 1179 ok test_conversions (unittests.shared_data_test.StorageDataTrajectoryTests.test_conversions) ... ok test_df (unittests.shared_data_test.StorageDataTrajectoryTests.test_df) ... ok test_errors (unittests.shared_data_test.StorageDataTrajectoryTests.test_errors) ... ok test_storing_and_manipulating (unittests.shared_data_test.StorageDataTrajectoryTests.test_storing_and_manipulating) ... ok test_auto_load (unittests.storage_test.StorageTest.test_auto_load) ... Failed loading `Trajectory Testautoload_2024_11_14_17h55m27s (len:1): (config: ), (derived_parameters: ), (results: )` Error while auto-loading `kdsfdsf` under ``. ok test_delete_links (unittests.storage_test.StorageTest.test_delete_links) ... ok test_delete_whole_subtrees (unittests.storage_test.StorageTest.test_delete_whole_subtrees) ... Failed storing `ResultGroup results.mytest.yourtest: (test: )` Failed storing `[('DELETE', )>, (), {})]` Could not remove `[('DELETE', )>, (), {})]` from the trajectory. Maybe the item(s) was/were never stored to disk. ok test_fail_on_wrong_kwarg (unittests.storage_test.StorageTest.test_fail_on_wrong_kwarg) ... ok test_file_size_many_params (unittests.storage_test.StorageTest.test_file_size_many_params) ... ok test_get_default (unittests.storage_test.StorageTest.test_get_default) ... Failed loading `Trajectory Testgetdefault_2024_11_14_17h55m32s (len:1): (config: ), (results: )` Error while auto-loading `results.I.am.run_ALL.a.mean.answ` under ``. Failed loading `Trajectory Testgetdefault_2024_11_14_17h55m32s (len:1): (config: ), (results: )` Error while auto-loading `kdsfdsf` under ``. ok test_hdf5_settings_and_context (unittests.storage_test.StorageTest.test_hdf5_settings_and_context) ... ok test_loading_and_storing_empty_containers (unittests.storage_test.StorageTest.test_loading_and_storing_empty_containers) ... ok test_loading_as_new (unittests.storage_test.StorageTest.test_loading_as_new) ... ok test_loading_explored_parameters (unittests.storage_test.StorageTest.test_loading_explored_parameters) ... ok test_max_depth_loading_and_storing (unittests.storage_test.StorageTest.test_max_depth_loading_and_storing) ... ok test_maximum_overview_size (unittests.storage_test.StorageTest.test_maximum_overview_size) ... ok test_migrations (unittests.storage_test.StorageTest.test_migrations) ... ok test_new_assignment_method (unittests.storage_test.StorageTest.test_new_assignment_method) ... Failed adding `jj` under `parameters`. Failed adding `jj` under `results`. Failed adding `jj` under `config`. Failed adding `jj` under `derived_parameters`. Failed adding `jj` under `parameters`. Failed adding `jj` under `derived_parameters`. Failed adding `jj` under `config`. Failed adding `jj` under ``. Failed adding `jj` under `parameters`. Failed adding `jj` under `derived_parameters`. Failed adding `jj` under `results`. Failed adding `jj` under ``. Failed adding `jj` under `parameters`. Failed adding `jj` under `config`. Failed adding `jj` under `results`. Failed adding `jj` under ``. Failed adding `jj` under `derived_parameters`. Failed adding `jj` under `results`. Failed adding `jj` under `config`. Failed adding `jj` under ``. ok test_no_run_information_loading (unittests.storage_test.StorageTest.test_no_run_information_loading) ... ok test_overwrite_annotations_and_results (unittests.storage_test.StorageTest.test_overwrite_annotations_and_results) ... ok test_overwrite_stuff (unittests.storage_test.StorageTest.test_overwrite_stuff) ... Cannot overwrite `{'b'}`, these items are not supposed to be stored by the leaf node. ok test_partial_loading (unittests.storage_test.StorageTest.test_partial_loading) ... You marked {'x'} for load only, but I cannot find these for `results.mytest.test` You marked `{'d'}` for not loading, but these were not part of `results.mytest.test` anyway. Failed loading `Result results.mytest.test: a='b'` Failed loading `[('LEAF', , (), {'load_except': ['x'], 'load_only': ['y']})]` ok test_partially_delete_stuff (unittests.storage_test.StorageTest.test_partially_delete_stuff) ... ok test_removal_of_error_parameter (unittests.storage_test.StorageTest.test_removal_of_error_parameter) ... Failed storing leaf `results.j.j.josie`. I will remove the hdf5 data I added again. Failed storing `Trajectory traj_2024_11_14_17h55m41s (len:1): (config: ), (results: )` Failed storing leaf `results.j.j.josie2`. I will remove the hdf5 data I added again. Failed storing `Trajectory traj_2024_11_14_17h55m41s (len:1): (config: ), (results: )` ok test_shortenings_of_names (unittests.storage_test.StorageTest.test_shortenings_of_names) ... ok test_storage_service_errors (unittests.storage_test.StorageTest.test_storage_service_errors) ... Failed storing `test_storage_service_errors (unittests.storage_test.StorageTest.test_storage_service_errors)` Failed storing `test_storage_service_errors (unittests.storage_test.StorageTest.test_storage_service_errors)` Failed storing `test_storage_service_errors (unittests.storage_test.StorageTest.test_storage_service_errors)` Failed loading `Trajectory my_trajectory_2024_11_14_17h55m41s (len:1): (config: )` Failed storing `[('LEAF', None, None, None, None)]` Failed loading `Trajectory my_trajectory_2024_11_14_17h55m41s (len:1): (config: )` Failed loading `Trajectory my_trajectory_2024_11_14_17h55m41s (len:1): (config: )` ok test_store_and_load_large_dictionary (unittests.storage_test.StorageTest.test_store_and_load_large_dictionary) ... ok test_store_items_and_groups (unittests.storage_test.StorageTest.test_store_items_and_groups) ... ok test_store_overly_long_comment (unittests.storage_test.StorageTest.test_store_overly_long_comment) ... ok test_storing_and_loading_groups (unittests.storage_test.StorageTest.test_storing_and_loading_groups) ... ok test_version_mismatch (unittests.storage_test.StorageTest.test_version_mismatch) ... Failed loading `Trajectory TestVERSION_2024_11_14_17h55m42s (len:1): (config: )` Current pypet version is 0.6.1 with python 3.13.0 but your trajectory was created with version 0.1a.1 under python 3.13.0. Yet, you enforced the load, so I will handle the trajectory despite the version mismatch. ok test_wildcard_search (unittests.storage_test.StorageTest.test_wildcard_search) ... ok test_if_all_is_complete (unittests.brian2tests.module_test.TestAllBrian2Import.test_if_all_is_complete) ... ok test_import_star (unittests.brian2tests.module_test.TestAllBrian2Import.test_import_star) ... ok test_if_all_is_complete (unittests.module_test.TestAllImport.test_if_all_is_complete) ... ok test_import_star (unittests.module_test.TestAllImport.test_import_star) ... ok test_consecutive_merges (integration.merge_test.TestConsecutiveMerges.test_consecutive_merges) ... MainProcess 2024-11-14 17:56:01,268 root ERROR R and Alpha of consecutive merge test (-0.7366684742528072, 5.989107967056826e-08) ok test_merge_all_in_folder (integration.merge_test.TestConsecutiveMerges.test_merge_all_in_folder) ... ok test_merge_many (integration.merge_test.TestConsecutiveMerges.test_merge_many) ... ok test_flatten_dictionary (unittests.utils_test.TestDictionaryMethods.test_flatten_dictionary) ... ok test_nest_dicitionary (unittests.utils_test.TestDictionaryMethods.test_nest_dicitionary) ... ok test_nested_equal (unittests.utils_test.TestEqualityOperations.test_nested_equal) ... ok test_find_unique (unittests.utils_test.TestFindUnique.test_find_unique) ... Your parameter entries could not be hashed, now I am sorting slowly in O(N**2). Your parameter entries could not be hashed, now I am sorting slowly in O(N**2). ok test_iter (unittests.utils_test.TestIteratorChain.test_iter) ... ok test_next (unittests.utils_test.TestIteratorChain.test_next) ... ok test_pipeline (integration.pipeline_test.TestMPImmediatePostProcLocal.test_pipeline) ... Executing command `ptrepack -v --complib zlib --complevel 9 --shuffle 1 --fletcher32 0 /tmp/tmp_pypet_tests/hdf5compacting.hdf5 /tmp/tmp_pypet_tests/hdf5compacting_tmp.hdf5` #### Compacting successful #### Renaming files ### Compacting and Renaming finished #### ok test_pipeline_with_iter_args (integration.pipeline_test.TestMPImmediatePostProcLocal.test_pipeline_with_iter_args) ... ok test_postprocessing (integration.pipeline_test.TestMPImmediatePostProcLocal.test_postprocessing) ... ok test_postprocessing_iter_args (integration.pipeline_test.TestMPImmediatePostProcLocal.test_postprocessing_iter_args) ... ok test_pipeline (integration.pipeline_test.TestMPImmediatePostProcLock.test_pipeline) ... ok test_pipeline_with_iter_args (integration.pipeline_test.TestMPImmediatePostProcLock.test_pipeline_with_iter_args) ... ok test_postprocessing (integration.pipeline_test.TestMPImmediatePostProcLock.test_postprocessing) ... ok test_postprocessing_iter_args (integration.pipeline_test.TestMPImmediatePostProcLock.test_postprocessing_iter_args) ... ok test_pipeline (integration.pipeline_test.TestMPImmediatePostProcPipe.test_pipeline) ... ok test_pipeline_with_iter_args (integration.pipeline_test.TestMPImmediatePostProcPipe.test_pipeline_with_iter_args) ... ok test_postprocessing (integration.pipeline_test.TestMPImmediatePostProcPipe.test_postprocessing) ... ok test_postprocessing_iter_args (integration.pipeline_test.TestMPImmediatePostProcPipe.test_postprocessing_iter_args) ... ok test_pipeline (integration.pipeline_test.TestMPImmediatePostProcQueue.test_pipeline) ... ok test_pipeline_with_iter_args (integration.pipeline_test.TestMPImmediatePostProcQueue.test_pipeline_with_iter_args) ... ok test_postprocessing (integration.pipeline_test.TestMPImmediatePostProcQueue.test_postprocessing) ... ok test_postprocessing_iter_args (integration.pipeline_test.TestMPImmediatePostProcQueue.test_postprocessing_iter_args) ... ok test_pipeline (integration.pipeline_test.TestMPPostProc.test_pipeline) ... ok test_pipeline_with_iter_args (integration.pipeline_test.TestMPPostProc.test_pipeline_with_iter_args) ... ok test_postprocessing (integration.pipeline_test.TestMPPostProc.test_postprocessing) ... ok test_postprocessing_iter_args (integration.pipeline_test.TestMPPostProc.test_postprocessing_iter_args) ... ok test_expand (integration.merge_test.TestMergeResultsSort.test_expand) ... ok test_expand_after_reload (integration.merge_test.TestMergeResultsSort.test_expand_after_reload) ... ok test_f_iter_runs (integration.merge_test.TestMergeResultsSort.test_f_iter_runs) ... ok test_f_iter_runs_auto_load (integration.merge_test.TestMergeResultsSort.test_f_iter_runs_auto_load) ... ok test_graceful_exit (integration.merge_test.TestMergeResultsSort.test_graceful_exit) ... You killed the process(es) via `SIGINT` (`CTRL+C`). I am trying to exit gracefully. Using `SIGINT` (`CTRL+C`) again will cause an immediate exit. MainProcess 2024-11-14 17:56:36,162 pypet.environment.Environment ERROR Following runs of trajectory `T__test_graceful_exit__95416` did NOT complete: `run_00000005, run_00000006, run_00000007, run_00000008, run_00000009, run_00000010, run_00000011, run_00000012, run_00000013, run_00000014, run_00000015, run_00000016, run_00000017, run_00000018, run_00000019, run_00000020, run_00000021, run_00000022, run_00000023, run_00000024, run_00000025, run_00000026, run_00000027, run_00000028, run_00000029, run_00000030, run_00000031, run_00000032, run_00000033, run_00000034, run_00000035, run_00000036, run_00000037, run_00000038, run_00000039, run_00000040, run_00000041, run_00000042, run_00000043, run_00000044, run_00000045, run_00000046, run_00000047, run_00000048` ok test_if_results_are_sorted_correctly (integration.merge_test.TestMergeResultsSort.test_if_results_are_sorted_correctly) ... ok test_if_results_are_sorted_correctly_manual_runs (integration.merge_test.TestMergeResultsSort.test_if_results_are_sorted_correctly_manual_runs) ... ok test_if_results_are_sorted_correctly_using_map (integration.merge_test.TestMergeResultsSort.test_if_results_are_sorted_correctly_using_map) ... ok test_merge_normally (integration.merge_test.TestMergeResultsSort.test_merge_normally) ... ok test_merge_remove_duplicates (integration.merge_test.TestMergeResultsSort.test_merge_remove_duplicates) ... ok test_concurrent_pool (unittests.mpwrappers_test.TestNetLock.test_concurrent_pool) ... skipped 'Cannot be run without zmq' test_concurrent_pool_faulty (unittests.mpwrappers_test.TestNetLock.test_concurrent_pool_faulty) ... skipped 'Cannot be run without zmq' test_concurrent_scoop (unittests.mpwrappers_test.TestNetLock.test_concurrent_scoop) ... skipped 'Cannot be run without zmq' test_errors (unittests.mpwrappers_test.TestNetLock.test_errors) ... skipped 'Cannot be run without zmq' test_single_core (unittests.mpwrappers_test.TestNetLock.test_single_core) ... skipped 'Cannot be run without zmq' test_timout_pool (unittests.mpwrappers_test.TestNetLock.test_timout_pool) ... skipped 'Cannot be run without zmq' test_NOT_purge_duplicate_comments (pypet.tests.integration.environment_test.TestOtherHDF5Settings2.test_NOT_purge_duplicate_comments) ... ok test_a_large_run (pypet.tests.integration.environment_test.TestOtherHDF5Settings2.test_a_large_run) ... ok test_errors (pypet.tests.integration.environment_test.TestOtherHDF5Settings2.test_errors) ... ok test_expand (pypet.tests.integration.environment_test.TestOtherHDF5Settings2.test_expand) ... ok test_expand_after_reload (pypet.tests.integration.environment_test.TestOtherHDF5Settings2.test_expand_after_reload) ... ok test_file_overwriting (pypet.tests.integration.environment_test.TestOtherHDF5Settings2.test_file_overwriting) ... ok test_just_one_run (pypet.tests.integration.environment_test.TestOtherHDF5Settings2.test_just_one_run) ... ok test_niceness (pypet.tests.integration.environment_test.TestOtherHDF5Settings2.test_niceness) ... ok test_purge_duplicate_comments (pypet.tests.integration.environment_test.TestOtherHDF5Settings2.test_purge_duplicate_comments) ... MainProcess 2024-11-14 17:56:46,050 pypet.storageservice.HDF5StorageService ERROR Failed storing `Trajectory T__test_purge_duplicate_comments__56900_2024_11_14_17h56m46s (len:4): (config: ), (parameters: ), (derived_parameters: ), (results: ), (testleaf0: ), (testleaf1: ), ...` ok test_run (pypet.tests.integration.environment_test.TestOtherHDF5Settings2.test_run) ... ok test_run_complex (pypet.tests.integration.environment_test.TestOtherHDF5Settings2.test_run_complex) ... ok test_store_form_tuple (pypet.tests.integration.environment_test.TestOtherHDF5Settings2.test_store_form_tuple) ... ok test_store_single_group (pypet.tests.integration.environment_test.TestOtherHDF5Settings2.test_store_single_group) ... MainProcess 2024-11-14 17:56:49,219 pypet.storageservice.HDF5StorageService ERROR Failed loading `ParameterGroup parameters: (Normal: ), (Numpy: ), (Sparse: ), (Numpy_2D: ), (Numpy_3D: ), (Tuples: ), ...` ok test_switch_ON_large_tables (pypet.tests.integration.environment_test.TestOtherHDF5Settings2.test_switch_ON_large_tables) ... ok test_switch_off_all_tables (pypet.tests.integration.environment_test.TestOtherHDF5Settings2.test_switch_off_all_tables) ... ok test_switch_on_all_comments (pypet.tests.integration.environment_test.TestOtherHDF5Settings2.test_switch_on_all_comments) ... ok test_time_display_of_loading (pypet.tests.integration.environment_test.TestOtherHDF5Settings2.test_time_display_of_loading) ... ok test_two_runs (pypet.tests.integration.environment_test.TestOtherHDF5Settings2.test_two_runs) ... ok test_NOT_purge_duplicate_comments (integration.environment_test.TestOtherHDF5Settings.test_NOT_purge_duplicate_comments) ... ok test_a_large_run (integration.environment_test.TestOtherHDF5Settings.test_a_large_run) ... ok test_errors (integration.environment_test.TestOtherHDF5Settings.test_errors) ... ok test_expand (integration.environment_test.TestOtherHDF5Settings.test_expand) ... ok test_expand_after_reload (integration.environment_test.TestOtherHDF5Settings.test_expand_after_reload) ... ok test_file_overwriting (integration.environment_test.TestOtherHDF5Settings.test_file_overwriting) ... ok test_just_one_run (integration.environment_test.TestOtherHDF5Settings.test_just_one_run) ... ok test_niceness (integration.environment_test.TestOtherHDF5Settings.test_niceness) ... ok test_purge_duplicate_comments (integration.environment_test.TestOtherHDF5Settings.test_purge_duplicate_comments) ... MainProcess 2024-11-14 17:57:03,118 pypet.storageservice.HDF5StorageService ERROR Failed storing `Trajectory T__test_purge_duplicate_comments__97750_2024_11_14_17h57m03s (len:4): (config: ), (parameters: ), (derived_parameters: ), (results: ), (testleaf0: ), (testleaf1: ), ...` ok test_run (integration.environment_test.TestOtherHDF5Settings.test_run) ... ok test_run_complex (integration.environment_test.TestOtherHDF5Settings.test_run_complex) ... ok test_store_form_tuple (integration.environment_test.TestOtherHDF5Settings.test_store_form_tuple) ... ok test_store_single_group (integration.environment_test.TestOtherHDF5Settings.test_store_single_group) ... MainProcess 2024-11-14 17:57:06,161 pypet.storageservice.HDF5StorageService ERROR Failed loading `ParameterGroup parameters: (Normal: ), (Numpy: ), (Sparse: ), (Numpy_2D: ), (Numpy_3D: ), (Tuples: ), ...` ok test_switch_ON_large_tables (integration.environment_test.TestOtherHDF5Settings.test_switch_ON_large_tables) ... ok test_switch_off_all_tables (integration.environment_test.TestOtherHDF5Settings.test_switch_off_all_tables) ... ok test_switch_on_all_comments (integration.environment_test.TestOtherHDF5Settings.test_switch_on_all_comments) ... ok test_time_display_of_loading (integration.environment_test.TestOtherHDF5Settings.test_time_display_of_loading) ... ok test_two_runs (integration.environment_test.TestOtherHDF5Settings.test_two_runs) ... ok test_pipeline (integration.pipeline_test.TestPostProc.test_pipeline) ... ok test_pipeline_with_iter_args (integration.pipeline_test.TestPostProc.test_pipeline_with_iter_args) ... ok test_postprocessing (integration.pipeline_test.TestPostProc.test_postprocessing) ... ok test_postprocessing_iter_args (integration.pipeline_test.TestPostProc.test_postprocessing_iter_args) ... ok test_run_one_test (unittests.module_test.TestRunningTests.test_run_one_test) ... test_import_star (unittests.module_test.TestAllImport.test_import_star) ... ok ---------------------------------------------------------------------- Ran 1 test in 0.001s OK ok test_copy_custom_parameter (unittests.trajectory_test.TrajectoryCopyTreeTest.test_copy_custom_parameter) ... ok test_copy_explored (unittests.trajectory_test.TrajectoryCopyTreeTest.test_copy_explored) ... ok test_copy_links (unittests.trajectory_test.TrajectoryCopyTreeTest.test_copy_links) ... ok test_copy_tree_annotations (unittests.trajectory_test.TrajectoryCopyTreeTest.test_copy_tree_annotations) ... ok test_copy_tree_simple (unittests.trajectory_test.TrajectoryCopyTreeTest.test_copy_tree_simple) ... ok test_not_copy_from_node (unittests.trajectory_test.TrajectoryCopyTreeTest.test_not_copy_from_node) ... ok test_not_copy_leaves (unittests.trajectory_test.TrajectoryCopyTreeTest.test_not_copy_leaves) ... ok test_overwrite (unittests.trajectory_test.TrajectoryCopyTreeTest.test_overwrite) ... ok test_overwrite_leaves (unittests.trajectory_test.TrajectoryCopyTreeTest.test_overwrite_leaves) ... ok test_shallow_copy (unittests.trajectory_test.TrajectoryCopyTreeTest.test_shallow_copy) ... ok test_shallow_copy_not_full_copy (unittests.trajectory_test.TrajectoryCopyTreeTest.test_shallow_copy_not_full_copy) ... ok test_complex_find_statement (unittests.trajectory_test.TrajectoryFindTest.test_complex_find_statement) ... ok test_find_nothing (unittests.trajectory_test.TrajectoryFindTest.test_find_nothing) ... ok test_simple_find_idx (unittests.trajectory_test.TrajectoryFindTest.test_simple_find_idx) ... ok test_attribute_error_raises_when_leaf_and_group_with_same_name_are_added (unittests.trajectory_test.TrajectoryTest.test_attribute_error_raises_when_leaf_and_group_with_same_name_are_added) ... Failed adding `param2` under ``. Failed adding `test` under ``. ok test_change_properties_with_environment (unittests.trajectory_test.TrajectoryTest.test_change_properties_with_environment) ... ok test_changing (unittests.trajectory_test.TrajectoryTest.test_changing) ... ok test_changing_of_result (unittests.trajectory_test.TrajectoryTest.test_changing_of_result) ... ok test_contains_item_identity (unittests.trajectory_test.TrajectoryTest.test_contains_item_identity) ... ok test_data_dir (unittests.trajectory_test.TrajectoryTest.test_data_dir) ... ok test_debug (unittests.trajectory_test.TrajectoryTest.test_debug) ... ok test_deletion (unittests.trajectory_test.TrajectoryTest.test_deletion) ... ok test_deletion_during_run (unittests.trajectory_test.TrajectoryTest.test_deletion_during_run) ... ok test_dir (unittests.trajectory_test.TrajectoryTest.test_dir) ... ok test_dynamic_class_loading (unittests.trajectory_test.TrajectoryTest.test_dynamic_class_loading) ... ok test_f_get (unittests.trajectory_test.TrajectoryTest.test_f_get) ... ok test_f_get_run_information (unittests.trajectory_test.TrajectoryTest.test_f_get_run_information) ... ok test_f_getting_of_children (unittests.trajectory_test.TrajectoryTest.test_f_getting_of_children) ... ok test_f_is_completed (unittests.trajectory_test.TrajectoryTest.test_f_is_completed) ... ok test_find_in_all_runs (unittests.trajectory_test.TrajectoryTest.test_find_in_all_runs) ... ok test_find_in_all_runs_with_groups (unittests.trajectory_test.TrajectoryTest.test_find_in_all_runs_with_groups) ... ok test_get_all (unittests.trajectory_test.TrajectoryTest.test_get_all) ... ok test_get_children (unittests.trajectory_test.TrajectoryTest.test_get_children) ... ok test_get_data_dictionaries_directly (unittests.trajectory_test.TrajectoryTest.test_get_data_dictionaries_directly) ... ok test_get_item (unittests.trajectory_test.TrajectoryTest.test_get_item) ... ok test_if_picklable (unittests.trajectory_test.TrajectoryTest.test_if_picklable) ... ok test_illegal_namings (unittests.trajectory_test.TrajectoryTest.test_illegal_namings) ... ok test_iter_bfs (unittests.trajectory_test.TrajectoryTest.test_iter_bfs) ... ok test_iter_bfs_as_run (unittests.trajectory_test.TrajectoryTest.test_iter_bfs_as_run) ... ok test_iter_leaves (unittests.trajectory_test.TrajectoryTest.test_iter_leaves) ... ok test_kids (unittests.trajectory_test.TrajectoryTest.test_kids) ... ok test_lazy_setitem (unittests.trajectory_test.TrajectoryTest.test_lazy_setitem) ... ok test_max_depth (unittests.trajectory_test.TrajectoryTest.test_max_depth) ... ok test_mutual_exclusive_kwargs (unittests.trajectory_test.TrajectoryTest.test_mutual_exclusive_kwargs) ... ok test_new_grouping (unittests.trajectory_test.TrajectoryTest.test_new_grouping) ... ok test_no_clobber (unittests.trajectory_test.TrajectoryTest.test_no_clobber) ... MainProcess 2024-11-14 17:57:18,490 pypet.naturalnaming.NaturalNamingInterface ERROR Failed adding `test2` under ``. MainProcess 2024-11-14 17:57:18,490 pypet.naturalnaming.NaturalNamingInterface ERROR Failed adding `test` under ``. ok test_no_prefixes (unittests.trajectory_test.TrajectoryTest.test_no_prefixes) ... ok test_not_adding_pars_during_single_run (unittests.trajectory_test.TrajectoryTest.test_not_adding_pars_during_single_run) ... ok test_not_increase_exploration (unittests.trajectory_test.TrajectoryTest.test_not_increase_exploration) ... ok test_not_unique_search (unittests.trajectory_test.TrajectoryTest.test_not_unique_search) ... ok test_prefixes_dir (unittests.trajectory_test.TrajectoryTest.test_prefixes_dir) ... ok test_re_raise_old_wildcard_error (unittests.trajectory_test.TrajectoryTest.test_re_raise_old_wildcard_error) ... ok test_remove (unittests.trajectory_test.TrajectoryTest.test_remove) ... ok test_remove_of_all_type (unittests.trajectory_test.TrajectoryTest.test_remove_of_all_type) ... ok test_remove_of_explored_stuff_if_not_saved (unittests.trajectory_test.TrajectoryTest.test_remove_of_explored_stuff_if_not_saved) ... ok test_remove_of_explored_stuff_if_saved (unittests.trajectory_test.TrajectoryTest.test_remove_of_explored_stuff_if_saved) ... ok test_root_getting (unittests.trajectory_test.TrajectoryTest.test_root_getting) ... ok test_short_cuts (unittests.trajectory_test.TrajectoryTest.test_short_cuts) ... ok test_short_names_and_nested_failure (unittests.trajectory_test.TrajectoryTest.test_short_names_and_nested_failure) ... ok test_short_names_to_dict_failure (unittests.trajectory_test.TrajectoryTest.test_short_names_to_dict_failure) ... ok test_shrink (unittests.trajectory_test.TrajectoryTest.test_shrink) ... ok test_standard_change_param_change (unittests.trajectory_test.TrajectoryTest.test_standard_change_param_change) ... ok test_to_nested_dict (unittests.trajectory_test.TrajectoryTest.test_to_nested_dict) ... ok test_to_nested_dict_intermediate_node (unittests.trajectory_test.TrajectoryTest.test_to_nested_dict_intermediate_node) ... ok test_to_nested_dict_intermediate_node2 (unittests.trajectory_test.TrajectoryTest.test_to_nested_dict_intermediate_node2) ... ok test_truncation_of_string_statements_of_group_nodes (unittests.trajectory_test.TrajectoryTest.test_truncation_of_string_statements_of_group_nodes) ... ok ---------------------------------------------------------------------- Ran 923 tests in 439.848s OK (skipped=122) + pushd pypet/tests ~/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/pypet/tests ~/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + PATH=/builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin + PYTHONPATH=/builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib64/python3.13/site-packages:/builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages + PYTHONDONTWRITEBYTECODE=1 + PYTEST_ADDOPTS=' --ignore=/builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/.pyproject-builddir' + PYTEST_XDIST_AUTO_NUM_WORKERS=4 + /usr/bin/python3 all_examples.py MainProcess pypet.storageservice.HDF5StorageService INFO I will use the hdf5 file `hdf5/example_06.hdf5`. MainProcess pypet.environment.Environment INFO Environment initialized. MainProcess pypet.naturalnaming.NaturalNamingInterface INFO You have marked parameter parameters.diff_name for change before, so here you go! MainProcess pypet.environment.Environment INFO I am preparing the Trajectory for the experiment and initialise the store. MainProcess pypet.environment.Environment INFO Initialising the storage for the trajectory. MainProcess pypet.storageservice.HDF5StorageService INFO Initialising storage or updating meta data of Trajectory `Example_06_Euler_Integration`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `Example_06_Euler_Integration`. MainProcess pypet.environment.Environment INFO ************************************************************ STARTING runs of trajectory `Example_06_Euler_Integration`. ************************************************************ MainProcess pypet INFO PROGRESS: Finished 0/3 runs [ ] 0.0% MainProcess pypet INFO ========================================= Starting single run #0 of 3 ========================================= MainProcess pypet INFO ========================================= Finished single run #0 of 3 ========================================= MainProcess pypet INFO PROGRESS: Finished 1/3 runs [====== ] 33.3%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #1 of 3 ========================================= MainProcess pypet INFO ========================================= Finished single run #1 of 3 ========================================= MainProcess pypet INFO PROGRESS: Finished 2/3 runs [============= ] 66.7%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #2 of 3 ========================================= MainProcess pypet INFO ========================================= Finished single run #2 of 3 ========================================= MainProcess pypet INFO PROGRESS: Finished 3/3 runs [====================]100.0% MainProcess pypet.storageservice.HDF5StorageService INFO Initialising storage or updating meta data of Trajectory `Example_06_Euler_Integration`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `Example_06_Euler_Integration`. MainProcess pypet.environment.Environment INFO ************************************************************ FINISHED all runs of trajectory `Example_06_Euler_Integration`. ************************************************************ MainProcess pypet.environment.Environment INFO ************************************************************ STARTING FINAL STORING of trajectory `Example_06_Euler_Integration` ************************************************************ MainProcess pypet.storageservice.HDF5StorageService INFO Start storing Trajectory `Example_06_Euler_Integration`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `config`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `parameters`. /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/parameter.py:1305: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. A typical example is when you are setting values in a column of a DataFrame, like: df["col"][row_indexer] = value Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy store_dict["explored_data" + ArrayParameter.IDENTIFIER]["idx"][ MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `derived_parameters`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished storing Trajectory `Example_06_Euler_Integration`. MainProcess pypet.environment.Environment INFO ************************************************************ FINISHED FINAL STORING of trajectory `Example_06_Euler_Integration`. ************************************************************ MainProcess pypet.environment.Environment INFO All runs of trajectory `Example_06_Euler_Integration` were completed successfully. MainProcess pypet.storageservice.HDF5StorageService INFO Loading trajectory `Example_06_Euler_Integration`. MainProcess pypet.storageservice.HDF5StorageService INFO Loading branch `config` in mode `1`. MainProcess pypet.storageservice.HDF5StorageService INFO Loading branch `derived_parameters` in mode `1`. MainProcess pypet.storageservice.HDF5StorageService INFO Loading branch `parameters` in mode `1`. MainProcess pypet.storageservice.HDF5StorageService INFO Loading branch `results` in mode `1`. IMPORTED MATPLOTLIB WITH AGG ---------- The source code of your function ---------- def diff_roessler(value_array, a, c): """The Roessler attractor differential equation :param value_array: 3d array containing the x,y, and z component values. :param a: Constant attractor parameter :param c: Constant attractor parameter :return: 3d array of the Roessler system evaluated at `value_array` """ b=a diff_array = np.zeros(3) diff_array[0] = -value_array[1] - value_array[2] diff_array[1] = value_array[0] + a * value_array[1] diff_array[2] = b + value_array[2] * (value_array[0] - c) return diff_array MainProcess pypet.storageservice.HDF5StorageService INFO I will use the hdf5 file `hdf5/example_05.hdf5`. MainProcess pypet.environment.Environment INFO Environment initialized. MainProcess pypet.environment.Environment INFO I am preparing the Trajectory for the experiment and initialise the store. MainProcess pypet.environment.Environment INFO Initialising the storage for the trajectory. MainProcess pypet.storageservice.HDF5StorageService INFO Initialising storage or updating meta data of Trajectory `Example_05_Euler_Integration`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `Example_05_Euler_Integration`. MainProcess pypet.environment.Environment INFO ************************************************************ STARTING runs of trajectory `Example_05_Euler_Integration`. ************************************************************ MainProcess pypet INFO PROGRESS: Finished 0/3 runs [ ] 0.0% MainProcess pypet INFO ========================================= Starting single run #0 of 3 ========================================= MainProcess pypet INFO ========================================= Finished single run #0 of 3 ========================================= MainProcess pypet INFO PROGRESS: Finished 1/3 runs [====== ] 33.3%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #1 of 3 ========================================= MainProcess pypet INFO ========================================= Finished single run #1 of 3 ========================================= MainProcess pypet INFO PROGRESS: Finished 2/3 runs [============= ] 66.7%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #2 of 3 ========================================= MainProcess pypet INFO ========================================= Finished single run #2 of 3 ========================================= MainProcess pypet INFO PROGRESS: Finished 3/3 runs [====================]100.0% MainProcess pypet.storageservice.HDF5StorageService INFO Initialising storage or updating meta data of Trajectory `Example_05_Euler_Integration`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `Example_05_Euler_Integration`. MainProcess pypet.environment.Environment INFO ************************************************************ FINISHED all runs of trajectory `Example_05_Euler_Integration`. ************************************************************ MainProcess pypet.environment.Environment INFO ************************************************************ STARTING FINAL STORING of trajectory `Example_05_Euler_Integration` ************************************************************ MainProcess pypet.storageservice.HDF5StorageService INFO Start storing Trajectory `Example_05_Euler_Integration`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `config`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `parameters`. /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/parameter.py:1305: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. A typical example is when you are setting values in a column of a DataFrame, like: df["col"][row_indexer] = value Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy store_dict["explored_data" + ArrayParameter.IDENTIFIER]["idx"][ MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `derived_parameters`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished storing Trajectory `Example_05_Euler_Integration`. MainProcess pypet.environment.Environment INFO ************************************************************ FINISHED FINAL STORING of trajectory `Example_05_Euler_Integration`. ************************************************************ MainProcess pypet.environment.Environment INFO All runs of trajectory `Example_05_Euler_Integration` were completed successfully. MainProcess pypet.storageservice.HDF5StorageService INFO I will use the hdf5 file `hdf5/example_05.hdf5`. MainProcess pypet.storageservice.HDF5StorageService INFO Loading trajectory `Example_05_Euler_Integration`. MainProcess pypet.storageservice.HDF5StorageService INFO Loading branch `config` in mode `2`. MainProcess pypet.storageservice.HDF5StorageService INFO Loading branch `derived_parameters` in mode `2`. MainProcess pypet.storageservice.HDF5StorageService ERROR Failed loading `Trajectory Example_05_Euler_Integration (`Go for Euler!`, len:3): (config: ), (derived_parameters: )` MainProcess pypet.storageservice.HDF5StorageService INFO I will use the hdf5 file `hdf5/example_05.hdf5`. MainProcess pypet.storageservice.HDF5StorageService INFO Loading trajectory `Example_05_Euler_Integration`. MainProcess pypet.storageservice.HDF5StorageService INFO Loading branch `config` in mode `2`. MainProcess pypet.storageservice.HDF5StorageService INFO Loading branch `derived_parameters` in mode `2`. MainProcess pypet.storageservice.HDF5StorageService INFO Loading branch `parameters` in mode `2`. MainProcess pypet.storageservice.HDF5StorageService INFO Loading branch `results` in mode `1`. IMPORTED MATPLOTLIB WITH AGG That did'nt work, I am sorry: Could not create the class named `FunctionParameter`. ---------- The source code of your function ---------- def diff_lorenz(value_array, sigma, beta, rho): """The Lorenz attractor differential equation :param value_array: 3d array containing the x,y, and z component values. :param sigma: Constant attractor parameter :param beta: FConstant attractor parameter :param rho: Constant attractor parameter :return: 3d array of the Lorenz system evaluated at `value_array` """ diff_array = np.zeros(3) diff_array[0] = sigma * (value_array[1]-value_array[0]) diff_array[1] = value_array[0] * (rho - value_array[2]) - value_array[1] diff_array[2] = value_array[0] * value_array[1] - beta * value_array[2] return diff_array MainProcess pypet.storageservice.HDF5StorageService INFO I will use the hdf5 file `hdf5/example_23.hdf5`. MainProcess pypet.environment.Environment INFO Environment initialized. MainProcess pypet.environment.Environment INFO I am preparing the Trajectory for the experiment and initialise the store. MainProcess pypet.environment.Environment INFO Initialising the storage for the trajectory. MainProcess pypet.storageservice.HDF5StorageService INFO Initialising storage or updating meta data of Trajectory `Example_23_BRIAN2`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `Example_23_BRIAN2`. MainProcess pypet.environment.Environment INFO ************************************************************ STARTING runs of trajectory `Example_23_BRIAN2`. ************************************************************ MainProcess pypet INFO PROGRESS: Finished 0/4 runs [ ] 0.0% MainProcess pypet INFO ========================================= Starting single run #0 of 4 ========================================= INFO No numerical integration method specified for group 'neurongroup', using method 'euler' (took 0.01s, trying other methods took 0.02s). [brian2.stateupdaters.base.method_choice] IMPORTED MATPLOTLIB WITH AGG Initial Run MainProcess root INFO creating /tmp/brian_flag_test_dx6smo6w/tmp MainProcess root INFO creating /tmp/brian_flag_test_dx6smo6w/tmp/brian_flag_test_dx6smo6w MainProcess root INFO g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c /tmp/brian_flag_test_dx6smo6w/flag_test.cpp -o /tmp/brian_flag_test_dx6smo6w/tmp/brian_flag_test_dx6smo6w/flag_test.o -w WARNING Removing unsupported flag '-w' from compiler flags. [brian2.codegen.cpp_prefs] MainProcess root INFO creating /tmp/brian_flag_test_eowu16rp/tmp MainProcess root INFO creating /tmp/brian_flag_test_eowu16rp/tmp/brian_flag_test_eowu16rp MainProcess root INFO g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c /tmp/brian_flag_test_eowu16rp/flag_test.cpp -o /tmp/brian_flag_test_eowu16rp/tmp/brian_flag_test_eowu16rp/flag_test.o -O3 WARNING Removing unsupported flag '-O3' from compiler flags. [brian2.codegen.cpp_prefs] MainProcess root INFO creating /tmp/brian_flag_test_wyw5eefq/tmp MainProcess root INFO creating /tmp/brian_flag_test_wyw5eefq/tmp/brian_flag_test_wyw5eefq MainProcess root INFO g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c /tmp/brian_flag_test_wyw5eefq/flag_test.cpp -o /tmp/brian_flag_test_wyw5eefq/tmp/brian_flag_test_wyw5eefq/flag_test.o -ffast-math WARNING Removing unsupported flag '-ffast-math' from compiler flags. [brian2.codegen.cpp_prefs] MainProcess root INFO creating /tmp/brian_flag_test_9l9n13yv/tmp MainProcess root INFO creating /tmp/brian_flag_test_9l9n13yv/tmp/brian_flag_test_9l9n13yv MainProcess root INFO g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c /tmp/brian_flag_test_9l9n13yv/flag_test.cpp -o /tmp/brian_flag_test_9l9n13yv/tmp/brian_flag_test_9l9n13yv/flag_test.o -fno-finite-math-only WARNING Removing unsupported flag '-fno-finite-math-only' from compiler flags. [brian2.codegen.cpp_prefs] MainProcess root INFO creating /tmp/brian_flag_test_5_71rdc1/tmp MainProcess root INFO creating /tmp/brian_flag_test_5_71rdc1/tmp/brian_flag_test_5_71rdc1 MainProcess root INFO g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c /tmp/brian_flag_test_5_71rdc1/flag_test.cpp -o /tmp/brian_flag_test_5_71rdc1/tmp/brian_flag_test_5_71rdc1/flag_test.o -march=native WARNING Removing unsupported flag '-march=native' from compiler flags. [brian2.codegen.cpp_prefs] MainProcess root INFO creating /tmp/brian_flag_test_v0_7k2_7/tmp MainProcess root INFO creating /tmp/brian_flag_test_v0_7k2_7/tmp/brian_flag_test_v0_7k2_7 MainProcess root INFO g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c /tmp/brian_flag_test_v0_7k2_7/flag_test.cpp -o /tmp/brian_flag_test_v0_7k2_7/tmp/brian_flag_test_v0_7k2_7/flag_test.o -std=c++11 WARNING Removing unsupported flag '-std=c++11' from compiler flags. [brian2.codegen.cpp_prefs] MainProcess root INFO building '_cython_magic_9aa60e923638aef74d50ee27d74ef09a' extension MainProcess root INFO creating /builddir/.cython/brian_extensions/builddir MainProcess root INFO creating /builddir/.cython/brian_extensions/builddir/.cython MainProcess root INFO creating /builddir/.cython/brian_extensions/builddir/.cython/brian_extensions MainProcess root INFO g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/include -I/usr/lib64/python3.13/site-packages/brian2/synapses -I/usr/include/python3.13 -c /builddir/.cython/brian_extensions/_cython_magic_9aa60e923638aef74d50ee27d74ef09a.cpp -o /builddir/.cython/brian_extensions/builddir/.cython/brian_extensions/_cython_magic_9aa60e923638aef74d50ee27d74ef09a.o WARNING Cannot use Cython, a test compilation failed: command 'g++' failed: No such file or directory (CompileError) Certain compiler configurations (e.g. clang in a conda environment on OS X) are known to be problematic. Note that you can switch the compiler by setting the 'CC' and 'CXX' environment variables. For example, you may want to try 'CC=gcc' and 'CXX=g++'. [brian2.codegen.runtime.cython_rt.cython_rt.failed_compile_test] INFO Cannot use compiled code, falling back to the numpy code generation target. Note that this will likely be slower than using compiled code. Set the code generation to numpy manually to avoid this message: prefs.codegen.target = "numpy" [brian2.devices.device.codegen_fallback] Starting simulation at t=0. s for a duration of 100. ms 100. ms (100%) simulated in < 1s Measurement run Starting simulation at t=100. ms for a duration of 0.5 s 0.5 s (100%) simulated in < 1s MainProcess pypet INFO ========================================= Finished single run #0 of 4 ========================================= MainProcess pypet INFO PROGRESS: Finished 1/4 runs [===== ] 25.0%, remaining: 0:00:01 MainProcess pypet INFO ========================================= Starting single run #1 of 4 ========================================= INFO No numerical integration method specified for group 'neurongroup', using method 'euler' (took 0.00s, trying other methods took 0.01s). [brian2.stateupdaters.base.method_choice] Initial Run Starting simulation at t=0. s for a duration of 100. ms 100. ms (100%) simulated in < 1s Measurement run Starting simulation at t=100. ms for a duration of 0.5 s 0.5 s (100%) simulated in < 1s MainProcess pypet INFO ========================================= Finished single run #1 of 4 ========================================= MainProcess pypet INFO PROGRESS: Finished 2/4 runs [========== ] 50.0%, remaining: 0:00:01 MainProcess pypet INFO ========================================= Starting single run #2 of 4 ========================================= INFO No numerical integration method specified for group 'neurongroup', using method 'euler' (took 0.00s, trying other methods took 0.01s). [brian2.stateupdaters.base.method_choice] Initial Run Starting simulation at t=0. s for a duration of 100. ms 100. ms (100%) simulated in < 1s Measurement run Starting simulation at t=100. ms for a duration of 0.5 s 0.5 s (100%) simulated in < 1s MainProcess pypet INFO ========================================= Finished single run #2 of 4 ========================================= MainProcess pypet INFO PROGRESS: Finished 3/4 runs [=============== ] 75.0%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #3 of 4 ========================================= INFO No numerical integration method specified for group 'neurongroup', using method 'euler' (took 0.00s, trying other methods took 0.01s). [brian2.stateupdaters.base.method_choice] Initial Run Starting simulation at t=0. s for a duration of 100. ms 100. ms (100%) simulated in < 1s Measurement run Starting simulation at t=100. ms for a duration of 0.5 s 0.5 s (100%) simulated in < 1s MainProcess pypet INFO ========================================= Finished single run #3 of 4 ========================================= MainProcess pypet INFO PROGRESS: Finished 4/4 runs [====================]100.0% MainProcess pypet.storageservice.HDF5StorageService INFO Initialising storage or updating meta data of Trajectory `Example_23_BRIAN2`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `Example_23_BRIAN2`. MainProcess pypet.environment.Environment INFO ************************************************************ FINISHED all runs of trajectory `Example_23_BRIAN2`. ************************************************************ MainProcess pypet.environment.Environment INFO ************************************************************ STARTING FINAL STORING of trajectory `Example_23_BRIAN2` ************************************************************ MainProcess pypet.storageservice.HDF5StorageService INFO Start storing Trajectory `Example_23_BRIAN2`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `config`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `parameters`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished storing Trajectory `Example_23_BRIAN2`. MainProcess pypet.environment.Environment INFO ************************************************************ FINISHED FINAL STORING of trajectory `Example_23_BRIAN2`. ************************************************************ MainProcess pypet.environment.Environment INFO All runs of trajectory `Example_23_BRIAN2` were completed successfully. IMPORTED MATPLOTLIB WITH AGG Start of evolution -- Generation 0 -- Evaluated 100 individuals Min 17.0 Max 34.0 Avg 25.3 Std 3.436568055487909 -- Generation 1 -- Evaluated 61 individuals Min 23.0 Max 35.0 Avg 28.16 Std 2.862586243242284 -- Generation 2 -- Evaluated 62 individuals Min 23.0 Max 35.0 Avg 30.52 Std 2.4473659309551787 -- Generation 3 -- Evaluated 66 individuals Min 27.0 Max 37.0 Avg 32.4 Std 1.9595917942265215 -- Generation 4 -- Evaluated 66 individuals Min 29.0 Max 39.0 Avg 33.87 Std 1.863625498859725 -- Generation 5 -- Evaluated 53 individuals Min 30.0 Max 41.0 Avg 35.63 Std 1.8420369160253016 -- Generation 6 -- Evaluated 58 individuals Min 31.0 Max 41.0 Avg 37.05 Std 1.768473918382755 -- Generation 7 -- Evaluated 73 individuals Min 34.0 Max 41.0 Avg 38.59 Std 1.449793088685299 -- Generation 8 -- Evaluated 61 individuals Min 36.0 Max 43.0 Avg 39.73 Std 1.2794920867282242 -- Generation 9 -- Evaluated 56 individuals Min 38.0 Max 43.0 Avg 40.71 Std 1.012867217358655 -- Generation 10 -- Evaluated 60 individuals Min 39.0 Max 44.0 Avg 41.54 Std 1.0432641084596423 -- Generation 11 -- Evaluated 59 individuals Min 39.0 Max 46.0 Avg 42.46 Std 1.307057764599554 -- Generation 12 -- Evaluated 65 individuals Min 41.0 Max 46.0 Avg 43.32 Std 1.0380751417889145 -- Generation 13 -- Evaluated 68 individuals Min 41.0 Max 47.0 Avg 44.15 Std 1.125833024919839 -- Generation 14 -- Evaluated 50 individuals Min 43.0 Max 47.0 Avg 44.99 Std 0.9643132271206599 -- Generation 15 -- Evaluated 68 individuals Min 43.0 Max 49.0 Avg 45.75 Std 1.1169153951844093 -- Generation 16 -- Evaluated 60 individuals Min 44.0 Max 48.0 Avg 46.4 Std 0.9380831519647441 -- Generation 17 -- Evaluated 53 individuals Min 45.0 Max 49.0 Avg 47.19 Std 0.9021640649017801 -- Generation 18 -- Evaluated 53 individuals Min 46.0 Max 49.0 Avg 47.77 Std 0.7190966555335749 -- Generation 19 -- Evaluated 60 individuals Min 46.0 Max 50.0 Avg 48.17 Std 0.7078841713161492 -- End of (successful) evolution -- Best individual is [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1], (50.0,) IMPORTED MATPLOTLIB WITH AGG Evaluated 0 individuals Min 17.0 Max 34.0 Avg 25.3 Std 3.436568055487909 Evaluated 0 individuals Min 23.0 Max 35.0 Avg 28.16 Std 2.862586243242284 Evaluated 0 individuals Min 23.0 Max 35.0 Avg 30.52 Std 2.4473659309551787 Evaluated 0 individuals Min 27.0 Max 37.0 Avg 32.4 Std 1.9595917942265215 Evaluated 0 individuals Min 29.0 Max 39.0 Avg 33.87 Std 1.863625498859725 Evaluated 0 individuals Min 30.0 Max 41.0 Avg 35.63 Std 1.8420369160253016 Evaluated 0 individuals Min 31.0 Max 41.0 Avg 37.05 Std 1.768473918382755 Evaluated 0 individuals Min 34.0 Max 41.0 Avg 38.59 Std 1.449793088685299 Evaluated 0 individuals Min 36.0 Max 43.0 Avg 39.73 Std 1.2794920867282242 Evaluated 0 individuals Min 38.0 Max 43.0 Avg 40.71 Std 1.012867217358655 Evaluated 0 individuals Min 39.0 Max 44.0 Avg 41.54 Std 1.0432641084596423 Evaluated 0 individuals Min 39.0 Max 46.0 Avg 42.46 Std 1.307057764599554 Evaluated 0 individuals Min 41.0 Max 46.0 Avg 43.32 Std 1.0380751417889145 Evaluated 0 individuals Min 41.0 Max 47.0 Avg 44.15 Std 1.125833024919839 Evaluated 0 individuals Min 43.0 Max 47.0 Avg 44.99 Std 0.9643132271206599 Evaluated 0 individuals Min 43.0 Max 49.0 Avg 45.75 Std 1.1169153951844093 Evaluated 0 individuals Min 44.0 Max 48.0 Avg 46.4 Std 0.9380831519647441 Evaluated 0 individuals Min 45.0 Max 49.0 Avg 47.19 Std 0.9021640649017801 Evaluated 0 individuals Min 46.0 Max 49.0 Avg 47.77 Std 0.7190966555335749 Evaluated 0 individuals Min 46.0 Max 50.0 Avg 48.17 Std 0.7078841713161492 -- End of (successful) evolution -- Best individual is [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1], (50.0,) IMPORTED MATPLOTLIB WITH AGG Start of evolution -- Generation 0 -- Evaluated 100 individuals Min 17.0 Max 34.0 Avg 25.3 Std 3.436568055487909 -- Generation 1 -- Evaluated 61 individuals Min 23.0 Max 35.0 Avg 28.16 Std 2.862586243242284 -- Generation 2 -- Evaluated 62 individuals Min 23.0 Max 35.0 Avg 30.52 Std 2.4473659309551787 -- Generation 3 -- Evaluated 66 individuals Min 27.0 Max 37.0 Avg 32.4 Std 1.9595917942265215 -- Generation 4 -- Evaluated 66 individuals Min 29.0 Max 39.0 Avg 33.87 Std 1.863625498859725 -- Generation 5 -- Evaluated 53 individuals Min 30.0 Max 41.0 Avg 35.63 Std 1.8420369160253016 -- Generation 6 -- Evaluated 58 individuals Min 31.0 Max 41.0 Avg 37.05 Std 1.768473918382755 -- Generation 7 -- Evaluated 73 individuals Min 34.0 Max 41.0 Avg 38.59 Std 1.449793088685299 -- Generation 8 -- Evaluated 61 individuals Min 36.0 Max 43.0 Avg 39.73 Std 1.2794920867282242 -- Generation 9 -- Evaluated 56 individuals Min 38.0 Max 43.0 Avg 40.71 Std 1.012867217358655 -- Generation 10 -- Evaluated 60 individuals Min 39.0 Max 44.0 Avg 41.54 Std 1.0432641084596423 -- Generation 11 -- Evaluated 59 individuals Min 39.0 Max 46.0 Avg 42.46 Std 1.307057764599554 -- Generation 12 -- Evaluated 65 individuals Min 41.0 Max 46.0 Avg 43.32 Std 1.0380751417889145 -- Generation 13 -- Evaluated 68 individuals Min 41.0 Max 47.0 Avg 44.15 Std 1.125833024919839 -- Generation 14 -- Evaluated 50 individuals Min 43.0 Max 47.0 Avg 44.99 Std 0.9643132271206599 -- Generation 15 -- Evaluated 68 individuals Min 43.0 Max 49.0 Avg 45.75 Std 1.1169153951844093 -- Generation 16 -- Evaluated 60 individuals Min 44.0 Max 48.0 Avg 46.4 Std 0.9380831519647441 -- Generation 17 -- Evaluated 53 individuals Min 45.0 Max 49.0 Avg 47.19 Std 0.9021640649017801 -- Generation 18 -- Evaluated 53 individuals Min 46.0 Max 49.0 Avg 47.77 Std 0.7190966555335749 -- Generation 19 -- Evaluated 60 individuals Min 46.0 Max 50.0 Avg 48.17 Std 0.7078841713161492 -- End of (successful) evolution -- Best individual is [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1], (50.0,) IMPORTED MATPLOTLIB WITH AGG Start of evolution -- Generation 0 -- Evaluated 100 individuals Min 17.0 Max 34.0 Avg 25.3 Std 3.436568055487909 -- Generation 1 -- Evaluated 61 individuals Min 23.0 Max 35.0 Avg 28.16 Std 2.862586243242284 -- Generation 2 -- Evaluated 62 individuals Min 23.0 Max 35.0 Avg 30.52 Std 2.4473659309551787 -- Generation 3 -- Evaluated 66 individuals Min 27.0 Max 37.0 Avg 32.4 Std 1.9595917942265215 -- Generation 4 -- Evaluated 66 individuals Min 29.0 Max 39.0 Avg 33.87 Std 1.863625498859725 -- Generation 5 -- Evaluated 53 individuals Min 30.0 Max 41.0 Avg 35.63 Std 1.8420369160253016 -- Generation 6 -- Evaluated 58 individuals Min 31.0 Max 41.0 Avg 37.05 Std 1.768473918382755 -- Generation 7 -- Evaluated 73 individuals Min 34.0 Max 41.0 Avg 38.59 Std 1.449793088685299 -- Generation 8 -- Evaluated 61 individuals Min 36.0 Max 43.0 Avg 39.73 Std 1.2794920867282242 -- Generation 9 -- Evaluated 56 individuals Min 38.0 Max 43.0 Avg 40.71 Std 1.012867217358655 -- Generation 10 -- Evaluated 60 individuals Min 39.0 Max 44.0 Avg 41.54 Std 1.0432641084596423 -- Generation 11 -- Evaluated 59 individuals Min 39.0 Max 46.0 Avg 42.46 Std 1.307057764599554 -- Generation 12 -- Evaluated 65 individuals Min 41.0 Max 46.0 Avg 43.32 Std 1.0380751417889145 -- Generation 13 -- Evaluated 68 individuals Min 41.0 Max 47.0 Avg 44.15 Std 1.125833024919839 -- Generation 14 -- Evaluated 50 individuals Min 43.0 Max 47.0 Avg 44.99 Std 0.9643132271206599 -- Generation 15 -- Evaluated 68 individuals Min 43.0 Max 49.0 Avg 45.75 Std 1.1169153951844093 -- Generation 16 -- Evaluated 60 individuals Min 44.0 Max 48.0 Avg 46.4 Std 0.9380831519647441 -- Generation 17 -- Evaluated 53 individuals Min 45.0 Max 49.0 Avg 47.19 Std 0.9021640649017801 -- Generation 18 -- Evaluated 53 individuals Min 46.0 Max 49.0 Avg 47.77 Std 0.7190966555335749 -- Generation 19 -- Evaluated 60 individuals Min 46.0 Max 50.0 Avg 48.17 Std 0.7078841713161492 -- End of (successful) evolution -- Best individual is [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1], (50.0,) MainProcess pypet.storageservice.HDF5StorageService INFO I will use the hdf5 file `hdf5/example_18.hdf5`. MainProcess pypet.environment.Environment INFO Environment initialized. MainProcess pypet.environment.Environment INFO I am preparing the Trajectory for the experiment and initialise the store. MainProcess pypet.environment.Environment INFO Initialising the storage for the trajectory. MainProcess pypet.storageservice.HDF5StorageService INFO Initialising storage or updating meta data of Trajectory `Multiplication`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `Multiplication`. MainProcess pypet.environment.Environment INFO ************************************************************ STARTING runs of trajectory `Multiplication`. ************************************************************ MainProcess pypet.storageservice.HDF5StorageService INFO Initialising storage or updating meta data of Trajectory `Multiplication`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `Multiplication`. IMPORTED MATPLOTLIB WITH AGG MainProcess pypet.environment.MultiprocContext INFO Starting the Storage Queue! MainProcess pypet.environment.Environment INFO Starting Pool with 2 processes MainProcess pypet.environment.Environment INFO Freezing pool input MainProcess pypet INFO PROGRESS: Finished 0/2500 runs [ ] 0.0% MainProcess pypet INFO PROGRESS: Finished 125/2500 runs [= ] 5.0%, remaining: 0:00:08 MainProcess pypet INFO PROGRESS: Finished 250/2500 runs [== ] 10.0%, remaining: 0:00:09 MainProcess pypet INFO PROGRESS: Finished 375/2500 runs [=== ] 15.0%, remaining: 0:00:09 MainProcess pypet INFO PROGRESS: Finished 500/2500 runs [==== ] 20.0%, remaining: 0:00:09 MainProcess pypet INFO PROGRESS: Finished 625/2500 runs [===== ] 25.0%, remaining: 0:00:08 MainProcess pypet INFO PROGRESS: Finished 750/2500 runs [====== ] 30.0%, remaining: 0:00:08 MainProcess pypet INFO PROGRESS: Finished 875/2500 runs [======= ] 35.0%, remaining: 0:00:07 MainProcess pypet INFO PROGRESS: Finished 1000/2500 runs [======== ] 40.0%, remaining: 0:00:07 MainProcess pypet INFO PROGRESS: Finished 1125/2500 runs [========= ] 45.0%, remaining: 0:00:06 MainProcess pypet INFO PROGRESS: Finished 1250/2500 runs [========== ] 50.0%, remaining: 0:00:06 MainProcess pypet INFO PROGRESS: Finished 1375/2500 runs [=========== ] 55.0%, remaining: 0:00:05 MainProcess pypet INFO PROGRESS: Finished 1500/2500 runs [============ ] 60.0%, remaining: 0:00:05 MainProcess pypet INFO PROGRESS: Finished 1625/2500 runs [============= ] 65.0%, remaining: 0:00:04 MainProcess pypet INFO PROGRESS: Finished 1750/2500 runs [============== ] 70.0%, remaining: 0:00:03 MainProcess pypet INFO PROGRESS: Finished 1875/2500 runs [=============== ] 75.0%, remaining: 0:00:03 MainProcess pypet INFO PROGRESS: Finished 2000/2500 runs [================ ] 80.0%, remaining: 0:00:02 MainProcess pypet INFO PROGRESS: Finished 2125/2500 runs [================= ] 85.0%, remaining: 0:00:01 MainProcess pypet INFO PROGRESS: Finished 2250/2500 runs [================== ] 90.0%, remaining: 0:00:01 MainProcess pypet INFO PROGRESS: Finished 2375/2500 runs [=================== ] 95.0%, remaining: 0:00:00 MainProcess pypet INFO PROGRESS: Finished 2500/2500 runs [====================]100.0% MainProcess pypet.environment.Environment INFO Pool has joined, will delete it. MainProcess pypet.environment.MultiprocContext INFO The Storage Queue will no longer accept new data. Hang in there for a little while. There still might be some data in the queue that needs to be stored. MainProcess pypet.environment.MultiprocContext INFO The Storage Queue has joined. MainProcess pypet.storageservice.HDF5StorageService INFO Initialising storage or updating meta data of Trajectory `Multiplication`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `Multiplication`. MainProcess pypet.environment.Environment INFO ************************************************************ FINISHED all runs of trajectory `Multiplication`. ************************************************************ MainProcess pypet.environment.Environment INFO ************************************************************ STARTING FINAL STORING of trajectory `Multiplication` ************************************************************ MainProcess pypet.storageservice.HDF5StorageService INFO Start storing Trajectory `Multiplication`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `config`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `parameters`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished storing Trajectory `Multiplication`. MainProcess pypet.environment.Environment INFO ************************************************************ FINISHED FINAL STORING of trajectory `Multiplication`. ************************************************************ MainProcess pypet.environment.Environment INFO All runs of trajectory `Multiplication` were completed successfully. The result of run 2042 is: 1680 The result of run 2044 is: 1760 INFO:pypet.storageservice.HDF5StorageService:I will use the hdf5 file `hdf5/example_16.hdf5`. INFO:pypet.storageservice.HDF5StorageService:Initialising storage or updating meta data of Trajectory `my_trajectory`. INFO:pypet.storageservice.HDF5StorageService:Finished init or meta data update for `my_trajectory`. IMPORTED MATPLOTLIB WITH AGG The last process to manipulate the trajectory was: `ForkPoolWorker-4` IMPORTED MATPLOTLIB WITH AGG t=1 w=2 Linking to x gives: 1 MainProcess pypet.storageservice.HDF5StorageService INFO I will use the hdf5 file `hdf5/example_14.hdf5`. MainProcess pypet.environment.Environment INFO Environment initialized. MainProcess pypet.environment.Environment INFO I am preparing the Trajectory for the experiment and initialise the store. MainProcess pypet.environment.Environment INFO Initialising the storage for the trajectory. MainProcess pypet.storageservice.HDF5StorageService INFO Initialising storage or updating meta data of Trajectory `Multiplication`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `Multiplication`. MainProcess pypet.environment.Environment INFO ************************************************************ STARTING runs of trajectory `Multiplication`. ************************************************************ MainProcess pypet INFO PROGRESS: Finished 0/2 runs [ ] 0.0% MainProcess pypet INFO ========================================= Starting single run #0 of 2 ========================================= MainProcess pypet INFO ========================================= Finished single run #0 of 2 ========================================= MainProcess pypet INFO PROGRESS: Finished 1/2 runs [========== ] 50.0%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #1 of 2 ========================================= MainProcess pypet INFO ========================================= Finished single run #1 of 2 ========================================= MainProcess pypet INFO PROGRESS: Finished 2/2 runs [====================]100.0% MainProcess pypet.storageservice.HDF5StorageService INFO Initialising storage or updating meta data of Trajectory `Multiplication`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `Multiplication`. MainProcess pypet.environment.Environment INFO ************************************************************ FINISHED all runs of trajectory `Multiplication`. ************************************************************ MainProcess pypet.environment.Environment INFO ************************************************************ STARTING FINAL STORING of trajectory `Multiplication` ************************************************************ MainProcess pypet.storageservice.HDF5StorageService INFO Start storing Trajectory `Multiplication`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `config`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `parameters`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch/node `mylink1`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished storing Trajectory `Multiplication`. MainProcess pypet.environment.Environment INFO ************************************************************ FINISHED FINAL STORING of trajectory `Multiplication`. ************************************************************ MainProcess pypet.environment.Environment INFO All runs of trajectory `Multiplication` were completed successfully. IMPORTED MATPLOTLIB WITH AGG x=1 Parameter parameters.x (len:2, `I am the first dimension!`): 1 MainProcess pypet.storageservice.HDF5StorageService INFO I will use the hdf5 file `hdf5/example_12.hdf5`. MainProcess pypet.environment.Environment INFO Environment initialized. IMPORTED MATPLOTLIB WITH AGG MainProcess pypet.environment.Environment INFO I am preparing the Trajectory for the experiment and initialise the store. MainProcess pypet.environment.Environment INFO Initialising the storage for the trajectory. MainProcess pypet.storageservice.HDF5StorageService INFO Initialising storage or updating meta data of Trajectory `Multiplication`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `Multiplication`. MainProcess pypet.environment.Environment INFO ************************************************************ STARTING runs of trajectory `Multiplication`. ************************************************************ MainProcess pypet.storageservice.HDF5StorageService INFO Initialising storage or updating meta data of Trajectory `Multiplication`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `Multiplication`. MainProcess pypet.environment.Environment INFO Starting multiprocessing with at most 2 processes running at the same time. MainProcess pypet INFO PROGRESS: Finished 0/12 runs [ ] 0.0% MainProcess pypet INFO PROGRESS: Finished 1/12 runs [= ] 8.3%, remaining: 0:00:00 MainProcess pypet INFO PROGRESS: Finished 2/12 runs [=== ] 16.7%, remaining: 0:00:00 MainProcess pypet INFO PROGRESS: Finished 3/12 runs [===== ] 25.0%, remaining: 0:00:00 MainProcess pypet INFO PROGRESS: Finished 4/12 runs [====== ] 33.3%, remaining: 0:00:00 MainProcess pypet INFO PROGRESS: Finished 5/12 runs [======== ] 41.7%, remaining: 0:00:00 MainProcess pypet INFO PROGRESS: Finished 6/12 runs [========== ] 50.0%, remaining: 0:00:00 MainProcess pypet INFO PROGRESS: Finished 7/12 runs [=========== ] 58.3%, remaining: 0:00:00 MainProcess pypet INFO PROGRESS: Finished 8/12 runs [============= ] 66.7%, remaining: 0:00:00 MainProcess pypet INFO PROGRESS: Finished 9/12 runs [=============== ] 75.0%, remaining: 0:00:00 MainProcess pypet INFO PROGRESS: Finished 10/12 runs [================ ] 83.3%, remaining: 0:00:00 MainProcess pypet INFO PROGRESS: Finished 11/12 runs [================== ] 91.7%, remaining: 0:00:00 MainProcess pypet INFO PROGRESS: Finished 12/12 runs [====================]100.0% MainProcess pypet.storageservice.HDF5StorageService INFO Initialising storage or updating meta data of Trajectory `Multiplication`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `Multiplication`. MainProcess pypet.environment.Environment INFO ************************************************************ FINISHED all runs of trajectory `Multiplication`. ************************************************************ MainProcess pypet.environment.Environment INFO ************************************************************ STARTING FINAL STORING of trajectory `Multiplication` ************************************************************ MainProcess pypet.storageservice.HDF5StorageService INFO Start storing Trajectory `Multiplication`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `config`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `parameters`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished storing Trajectory `Multiplication`. MainProcess pypet.environment.Environment INFO ************************************************************ FINISHED FINAL STORING of trajectory `Multiplication`. ************************************************************ MainProcess pypet.environment.Environment INFO All runs of trajectory `Multiplication` were completed successfully. [ 6 7 8 12 14 16 18 21 24 24 28 32] MainProcess pypet.storageservice.HDF5StorageService INFO I will use the hdf5 file `hdf5/example_10.hdf5`. MainProcess pypet.environment.Environment INFO Environment initialized. MainProcess pypet.environment.Environment INFO I am preparing the Trajectory for the experiment and initialise the store. MainProcess pypet.environment.Environment INFO Initialising the storage for the trajectory. MainProcess pypet.storageservice.HDF5StorageService INFO Initialising storage or updating meta data of Trajectory `Example10`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `Example10`. MainProcess pypet.environment.Environment INFO ************************************************************ STARTING runs of trajectory `Example10`. ************************************************************ MainProcess pypet INFO PROGRESS: Finished 0/144 runs [ ] 0.0% MainProcess pypet INFO ========================================= Starting single run #0 of 144 ========================================= MainProcess pypet INFO ========================================= Finished single run #0 of 144 ========================================= MainProcess pypet INFO ========================================= Starting single run #1 of 144 ========================================= MainProcess pypet INFO ========================================= Finished single run #1 of 144 ========================================= MainProcess pypet INFO ========================================= Starting single run #2 of 144 ========================================= MainProcess pypet INFO ========================================= Finished single run #2 of 144 ========================================= MainProcess pypet INFO ========================================= Starting single run #3 of 144 ========================================= MainProcess pypet INFO ========================================= Finished single run #3 of 144 ========================================= MainProcess pypet INFO ========================================= Starting single run #4 of 144 ========================================= MainProcess pypet INFO ========================================= Finished single run #4 of 144 ========================================= MainProcess pypet INFO ========================================= Starting single run #5 of 144 ========================================= MainProcess pypet INFO ========================================= Finished single run #5 of 144 ========================================= MainProcess pypet INFO ========================================= Starting single run #6 of 144 ========================================= MainProcess pypet INFO ========================================= Finished single run #6 of 144 ========================================= MainProcess pypet INFO ========================================= Starting single run #7 of 144 ========================================= MainProcess pypet INFO ========================================= Finished single run #7 of 144 ========================================= MainProcess pypet INFO PROGRESS: Finished 8/144 runs [= ] 5.6%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #8 of 144 ========================================= MainProcess pypet INFO ========================================= Finished single run #8 of 144 ========================================= MainProcess pypet INFO ========================================= Starting single run #9 of 144 ========================================= MainProcess pypet INFO ========================================= Finished single run #9 of 144 ========================================= MainProcess pypet INFO ========================================= Starting single run #10 of 144 ========================================= MainProcess pypet INFO ========================================= Finished single run #10 of 144 ========================================= MainProcess pypet INFO ========================================= Starting single run #11 of 144 ========================================= MainProcess pypet INFO ========================================= Finished single run #11 of 144 ========================================= MainProcess pypet INFO ========================================= Starting single run #12 of 144 ========================================= MainProcess pypet INFO ========================================= Finished single run #12 of 144 ========================================= MainProcess pypet INFO ========================================= Starting single run #13 of 144 ========================================= MainProcess pypet INFO ========================================= Finished single run #13 of 144 ========================================= MainProcess pypet INFO ========================================= Starting single run #14 of 144 ========================================= MainProcess pypet INFO ========================================= Finished single run #14 of 144 ========================================= MainProcess pypet INFO PROGRESS: Finished 15/144 runs [== ] 10.4%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #15 of 144 ========================================= MainProcess pypet INFO ========================================= Finished single run #15 of 144 ========================================= MainProcess pypet INFO ========================================= Starting single run #16 of 144 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MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `Example10`. MainProcess pypet.environment.Environment INFO ************************************************************ FINISHED all runs of trajectory `Example10`. ************************************************************ MainProcess pypet.environment.Environment INFO ************************************************************ STARTING FINAL STORING of trajectory `Example10` ************************************************************ MainProcess pypet.storageservice.HDF5StorageService INFO Start storing Trajectory `Example10`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `config`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `parameters`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished storing Trajectory `Example10`. MainProcess pypet.environment.Environment INFO ************************************************************ FINISHED FINAL STORING of trajectory `Example10`. ************************************************************ MainProcess pypet.environment.Environment INFO All runs of trajectory `Example10` were completed successfully. MainProcess pypet.storageservice.HDF5StorageService INFO Loading trajectory `Example10`. MainProcess pypet.storageservice.HDF5StorageService INFO Loading branch `config` in mode `2`. MainProcess pypet.storageservice.HDF5StorageService INFO Loading branch `parameters` in mode `2`. MainProcess pypet.storageservice.HDF5StorageService INFO Loading branch `results` in mode `2`. IMPORTED MATPLOTLIB WITH AGG IMPORTED MATPLOTLIB WITH AGG mat1 contains 0.874620 at position [10,10,10] mat2 contains 0.626417 at position [42,13] As promised: Nothing there! Told you! mat1 contains 0.874620 at position [10,10,10] And do not forget: Always look on the bright side of life! MainProcess pypet.storageservice.HDF5StorageService INFO I will use the hdf5 file `hdf5/example_08.hdf5`. MainProcess pypet.environment.Environment INFO Environment initialized. MainProcess pypet.environment.Environment INFO I am preparing the Trajectory for the experiment and initialise the store. MainProcess pypet.environment.Environment INFO Initialising the storage for the trajectory. MainProcess pypet.storageservice.HDF5StorageService INFO Initialising storage or updating meta data of Trajectory `Example08`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `Example08`. MainProcess pypet.environment.Environment INFO ************************************************************ STARTING runs of trajectory `Example08`. ************************************************************ MainProcess pypet INFO PROGRESS: Finished 0/12 runs [ ] 0.0% MainProcess pypet INFO ========================================= Starting single run #0 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #0 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 1/12 runs [= ] 8.3%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #1 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #1 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 2/12 runs [=== ] 16.7%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #2 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #2 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 3/12 runs [===== ] 25.0%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #3 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #3 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 4/12 runs [====== ] 33.3%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #4 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #4 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 5/12 runs [======== ] 41.7%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #5 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #5 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 6/12 runs [========== ] 50.0%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #6 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #6 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 7/12 runs [=========== ] 58.3%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #7 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #7 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 8/12 runs [============= ] 66.7%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #8 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #8 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 9/12 runs [=============== ] 75.0%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #9 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #9 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 10/12 runs [================ ] 83.3%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #10 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #10 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 11/12 runs [================== ] 91.7%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #11 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #11 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 12/12 runs [====================]100.0% MainProcess pypet.storageservice.HDF5StorageService INFO Initialising storage or updating meta data of Trajectory `Example08`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `Example08`. MainProcess pypet.environment.Environment INFO ************************************************************ FINISHED all runs of trajectory `Example08`. ************************************************************ MainProcess pypet.environment.Environment INFO ************************************************************ STARTING FINAL STORING of trajectory `Example08` ************************************************************ MainProcess pypet.storageservice.HDF5StorageService INFO Start storing Trajectory `Example08`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `config`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `parameters`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished storing Trajectory `Example08`. MainProcess pypet.environment.Environment INFO ************************************************************ FINISHED FINAL STORING of trajectory `Example08`. ************************************************************ MainProcess pypet.environment.Environment INFO All runs of trajectory `Example08` were completed successfully. MainProcess pypet.storageservice.HDF5StorageService INFO Loading trajectory `Example08`. MainProcess pypet.storageservice.HDF5StorageService INFO Loading branch `config` in mode `2`. MainProcess pypet.storageservice.HDF5StorageService INFO Loading branch `parameters` in mode `2`. MainProcess pypet.storageservice.HDF5StorageService INFO Loading branch `results` in mode `2`. IMPORTED MATPLOTLIB WITH AGG The run names and results for parameter combinations with x==2 or y==8: run_00000002: x=1, y=8, z=8 run_00000003: x=2, y=6, z=12 run_00000004: x=2, y=7, z=14 run_00000005: x=2, y=8, z=16 run_00000008: x=3, y=8, z=24 run_00000011: x=4, y=8, z=32 MainProcess STDOUT INFO Established redirection of `stdout`. MainProcess pypet.storageservice.HDF5StorageService INFO I will use the hdf5 file `hdf5/example_04.hdf5`. MainProcess pypet.environment.Environment INFO Environment initialized. MainProcess pypet.environment.Environment INFO I am preparing the Trajectory for the experiment and initialise the store. MainProcess pypet.environment.Environment INFO Initialising the storage for the trajectory. MainProcess pypet.storageservice.HDF5StorageService INFO Initialising storage or updating meta data of Trajectory `Example_04_MP`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `Example_04_MP`. MainProcess pypet.environment.Environment INFO ************************************************************ STARTING runs of trajectory `Example_04_MP`. ************************************************************ MainProcess pypet.storageservice.HDF5StorageService INFO Initialising storage or updating meta data of Trajectory `Example_04_MP`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `Example_04_MP`. MainProcess pypet.environment.MultiprocContext INFO Starting the Storage Queue! MainProcess pypet.environment.Environment INFO Starting Pool with 4 processes MainProcess pypet.environment.Environment INFO Freezing pool input MainProcess pypet INFO PROGRESS: Finished 0/400 runs [ ] 0.0% MainProcess pypet INFO PROGRESS: Finished 20/400 runs [= ] 5.0%, remaining: 0:00:01 MainProcess pypet INFO PROGRESS: Finished 40/400 runs [== ] 10.0%, remaining: 0:00:01 MainProcess pypet INFO PROGRESS: Finished 60/400 runs [=== ] 15.0%, remaining: 0:00:01 MainProcess pypet INFO PROGRESS: Finished 80/400 runs [==== ] 20.0%, remaining: 0:00:01 MainProcess pypet INFO PROGRESS: Finished 100/400 runs [===== ] 25.0%, remaining: 0:00:01 MainProcess pypet INFO PROGRESS: Finished 120/400 runs [====== ] 30.0%, remaining: 0:00:01 MainProcess pypet INFO PROGRESS: Finished 140/400 runs [======= ] 35.0%, remaining: 0:00:00 MainProcess pypet INFO PROGRESS: Finished 160/400 runs [======== ] 40.0%, remaining: 0:00:00 MainProcess pypet INFO PROGRESS: Finished 180/400 runs [========= ] 45.0%, remaining: 0:00:00 MainProcess pypet INFO PROGRESS: Finished 200/400 runs [========== ] 50.0%, remaining: 0:00:00 MainProcess pypet INFO PROGRESS: Finished 220/400 runs [=========== ] 55.0%, remaining: 0:00:00 MainProcess pypet INFO PROGRESS: Finished 240/400 runs [============ ] 60.0%, remaining: 0:00:00 MainProcess pypet INFO PROGRESS: Finished 260/400 runs [============= ] 65.0%, remaining: 0:00:00 MainProcess pypet INFO PROGRESS: Finished 280/400 runs [============== ] 70.0%, remaining: 0:00:00 MainProcess pypet INFO PROGRESS: Finished 300/400 runs [=============== ] 75.0%, remaining: 0:00:00 MainProcess pypet INFO PROGRESS: Finished 320/400 runs [================ ] 80.0%, remaining: 0:00:00 MainProcess pypet INFO PROGRESS: Finished 340/400 runs [================= ] 85.0%, remaining: 0:00:00 MainProcess pypet INFO PROGRESS: Finished 360/400 runs [================== ] 90.0%, remaining: 0:00:00 MainProcess pypet INFO PROGRESS: Finished 380/400 runs [=================== ] 95.0%, remaining: 0:00:00 MainProcess pypet INFO PROGRESS: Finished 400/400 runs [====================]100.0% MainProcess pypet.environment.Environment INFO Pool has joined, will delete it. MainProcess pypet.environment.MultiprocContext INFO The Storage Queue will no longer accept new data. Hang in there for a little while. There still might be some data in the queue that needs to be stored. MainProcess pypet.environment.MultiprocContext INFO The Storage Queue has joined. IMPORTED MATPLOTLIB WITH AGG MainProcess pypet.storageservice.HDF5StorageService INFO Initialising storage or updating meta data of Trajectory `Example_04_MP`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `Example_04_MP`. MainProcess pypet.environment.Environment INFO ************************************************************ FINISHED all runs of trajectory `Example_04_MP`. ************************************************************ MainProcess pypet.environment.Environment INFO ************************************************************ STARTING FINAL STORING of trajectory `Example_04_MP` ************************************************************ MainProcess pypet.storageservice.HDF5StorageService INFO Start storing Trajectory `Example_04_MP`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `config`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `parameters`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished storing Trajectory `Example_04_MP`. MainProcess pypet.environment.Environment INFO ************************************************************ FINISHED FINAL STORING of trajectory `Example_04_MP`. ************************************************************ MainProcess pypet.environment.Environment INFO All runs of trajectory `Example_04_MP` were completed successfully. IMPORTED MATPLOTLIB WITH AGG Disabled redirection of `stdout`. MainProcess pypet.storageservice.HDF5StorageService INFO I will use the hdf5 file `hdf5/example_03.hdf5`. MainProcess pypet.environment.Environment INFO Environment initialized. MainProcess pypet.storageservice.HDF5StorageService INFO I will use the hdf5 file `hdf5/example_03.hdf5`. MainProcess pypet.environment.Environment INFO Environment initialized. MainProcess pypet.environment.Environment INFO I am preparing the Trajectory for the experiment and initialise the store. MainProcess pypet.environment.Environment INFO Initialising the storage for the trajectory. MainProcess pypet.storageservice.HDF5StorageService INFO Initialising storage or updating meta data of Trajectory `Traj1_2024_11_14_17h58m44s`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `Traj1_2024_11_14_17h58m44s`. MainProcess pypet.environment.Environment INFO ************************************************************ STARTING runs of trajectory `Traj1_2024_11_14_17h58m44s`. ************************************************************ MainProcess pypet INFO PROGRESS: Finished 0/12 runs [ ] 0.0% MainProcess pypet INFO ========================================= Starting single run #0 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #0 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 1/12 runs [= ] 8.3%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #1 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #1 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 2/12 runs [=== ] 16.7%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #2 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #2 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 3/12 runs [===== ] 25.0%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #3 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #3 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 4/12 runs [====== ] 33.3%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #4 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #4 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 5/12 runs [======== ] 41.7%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #5 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #5 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 6/12 runs [========== ] 50.0%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #6 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #6 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 7/12 runs [=========== ] 58.3%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #7 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #7 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 8/12 runs [============= ] 66.7%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #8 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #8 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 9/12 runs [=============== ] 75.0%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #9 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #9 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 10/12 runs [================ ] 83.3%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #10 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #10 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 11/12 runs [================== ] 91.7%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #11 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #11 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 12/12 runs [====================]100.0% MainProcess pypet.storageservice.HDF5StorageService INFO Initialising storage or updating meta data of Trajectory `Traj1_2024_11_14_17h58m44s`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `Traj1_2024_11_14_17h58m44s`. MainProcess pypet.environment.Environment INFO ************************************************************ FINISHED all runs of trajectory `Traj1_2024_11_14_17h58m44s`. ************************************************************ MainProcess pypet.environment.Environment INFO ************************************************************ STARTING FINAL STORING of trajectory `Traj1_2024_11_14_17h58m44s` ************************************************************ MainProcess pypet.storageservice.HDF5StorageService INFO Start storing Trajectory `Traj1_2024_11_14_17h58m44s`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `config`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `parameters`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished storing Trajectory `Traj1_2024_11_14_17h58m44s`. MainProcess pypet.environment.Environment INFO ************************************************************ FINISHED FINAL STORING of trajectory `Traj1_2024_11_14_17h58m44s`. ************************************************************ MainProcess pypet.environment.Environment INFO All runs of trajectory `Traj1_2024_11_14_17h58m44s` were completed successfully. MainProcess pypet.environment.Environment INFO I am preparing the Trajectory for the experiment and initialise the store. MainProcess pypet.environment.Environment INFO Initialising the storage for the trajectory. MainProcess pypet.storageservice.HDF5StorageService INFO Initialising storage or updating meta data of Trajectory `Traj2_2024_11_14_17h58m44s`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `Traj2_2024_11_14_17h58m44s`. MainProcess pypet.environment.Environment INFO ************************************************************ STARTING runs of trajectory `Traj2_2024_11_14_17h58m44s`. ************************************************************ MainProcess pypet INFO PROGRESS: Finished 0/12 runs [ ] 0.0% MainProcess pypet INFO ========================================= Starting single run #0 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #0 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 1/12 runs [= ] 8.3%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #1 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #1 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 2/12 runs [=== ] 16.7%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #2 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #2 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 3/12 runs [===== ] 25.0%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #3 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #3 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 4/12 runs [====== ] 33.3%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #4 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #4 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 5/12 runs [======== ] 41.7%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #5 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #5 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 6/12 runs [========== ] 50.0%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #6 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #6 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 7/12 runs [=========== ] 58.3%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #7 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #7 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 8/12 runs [============= ] 66.7%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #8 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #8 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 9/12 runs [=============== ] 75.0%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #9 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #9 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 10/12 runs [================ ] 83.3%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #10 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #10 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 11/12 runs [================== ] 91.7%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #11 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #11 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 12/12 runs [====================]100.0% MainProcess pypet.storageservice.HDF5StorageService INFO Initialising storage or updating meta data of Trajectory `Traj2_2024_11_14_17h58m44s`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `Traj2_2024_11_14_17h58m44s`. MainProcess pypet.environment.Environment INFO ************************************************************ FINISHED all runs of trajectory `Traj2_2024_11_14_17h58m44s`. ************************************************************ MainProcess pypet.environment.Environment INFO ************************************************************ STARTING FINAL STORING of trajectory `Traj2_2024_11_14_17h58m44s` ************************************************************ MainProcess pypet.storageservice.HDF5StorageService INFO Start storing Trajectory `Traj2_2024_11_14_17h58m44s`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `config`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `parameters`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished storing Trajectory `Traj2_2024_11_14_17h58m44s`. MainProcess pypet.environment.Environment INFO ************************************************************ FINISHED FINAL STORING of trajectory `Traj2_2024_11_14_17h58m44s`. ************************************************************ MainProcess pypet.environment.Environment INFO All runs of trajectory `Traj2_2024_11_14_17h58m44s` were completed successfully. MainProcess pypet.storageservice.HDF5StorageService INFO Loading trajectory `Traj1_2024_11_14_17h58m44s`. MainProcess pypet.storageservice.HDF5StorageService INFO Loading branch `config` in mode `1`. MainProcess pypet.storageservice.HDF5StorageService INFO Loading branch `parameters` in mode `1`. MainProcess pypet.storageservice.HDF5StorageService INFO Loading branch `results` in mode `1`. MainProcess pypet.storageservice.HDF5StorageService INFO Loading trajectory `Traj2_2024_11_14_17h58m44s`. MainProcess pypet.storageservice.HDF5StorageService INFO Loading branch `config` in mode `1`. MainProcess pypet.storageservice.HDF5StorageService INFO Loading branch `parameters` in mode `1`. MainProcess pypet.storageservice.HDF5StorageService INFO Loading branch `results` in mode `1`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing backup of Traj2_2024_11_14_17h58m44s. MainProcess pypet.storageservice.HDF5StorageService INFO Finished backup of Traj2_2024_11_14_17h58m44s. MainProcess pypet.storageservice.HDF5StorageService INFO Storing backup of Traj1_2024_11_14_17h58m44s. MainProcess pypet.storageservice.HDF5StorageService INFO Finished backup of Traj1_2024_11_14_17h58m44s. MainProcess pypet.trajectory.Trajectory INFO Merging the parameters MainProcess pypet.trajectory.Trajectory INFO Merging run information MainProcess pypet.trajectory.Trajectory INFO Merging derived parameters MainProcess pypet.trajectory.Trajectory INFO Start copying results and single run derived parameters MainProcess pypet.trajectory.Trajectory INFO Updating Trajectory information and changed parameters in storage MainProcess pypet.trajectory.Trajectory INFO Merging config! MainProcess pypet.trajectory.Trajectory INFO Merging environment config! MainProcess pypet.trajectory.Trajectory INFO Merging config successful! MainProcess pypet.trajectory.Trajectory INFO Adding merge information MainProcess pypet.trajectory.Trajectory INFO Writing merged data to disk MainProcess pypet.storageservice.HDF5StorageService INFO Start storing Trajectory `Traj1_2024_11_14_17h58m44s`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `config`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `parameters`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `results`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `derived_parameters`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished storing Trajectory `Traj1_2024_11_14_17h58m44s`. MainProcess pypet.trajectory.Trajectory INFO Finished Merging! MainProcess pypet.storageservice.HDF5StorageService INFO Loading trajectory `Traj1_2024_11_14_17h58m44s`. MainProcess pypet.storageservice.HDF5StorageService INFO Loading branch `config` in mode `2`. MainProcess pypet.storageservice.HDF5StorageService INFO Loading branch `derived_parameters` in mode `1`. MainProcess pypet.storageservice.HDF5StorageService INFO Loading branch `parameters` in mode `2`. MainProcess pypet.storageservice.HDF5StorageService INFO Loading branch `results` in mode `2`. IMPORTED MATPLOTLIB WITH AGG run_00000000: x=1.000000, y=6.000000, z=6.000000 run_00000001: x=1.000000, y=7.000000, z=7.000000 run_00000002: x=1.000000, y=8.000000, z=8.000000 run_00000003: x=2.000000, y=6.000000, z=12.000000 run_00000004: x=2.000000, y=7.000000, z=14.000000 run_00000005: x=2.000000, y=8.000000, z=16.000000 run_00000006: x=3.000000, y=6.000000, z=18.000000 run_00000007: x=3.000000, y=7.000000, z=21.000000 run_00000008: x=3.000000, y=8.000000, z=24.000000 run_00000009: x=4.000000, y=6.000000, z=24.000000 run_00000010: x=4.000000, y=7.000000, z=28.000000 run_00000011: x=4.000000, y=8.000000, z=32.000000 run_00000012: x=3.000000, y=9.000000, z=27.000000 run_00000013: x=4.000000, y=9.000000, z=36.000000 run_00000014: x=5.000000, y=7.000000, z=35.000000 run_00000015: x=5.000000, y=8.000000, z=40.000000 run_00000016: x=5.000000, y=9.000000, z=45.000000 run_00000017: x=6.000000, y=7.000000, z=42.000000 run_00000018: x=6.000000, y=8.000000, z=48.000000 run_00000019: x=6.000000, y=9.000000, z=54.000000 IMPORTED MATPLOTLIB WITH AGG The full name of the new Skywalker Parameter is parameters.starwars.characters.luke_skywalker Damn it, there are two characters groups in the trajectory: NotUniqueNodeError('Node `characters` has been found more than once within the same depth 3. Full name of first occurrence is `parameters.starwars.characters` and of second `parameters.spaceballs.characters`') The name of the actor playing Luke is Mark Hamill. The object found for luke_skywalker is `Parameter parameters.starwars.characters.luke_skywalker (`May the force be with you!`): 'Mark Hamill'`. Help me Obiwan! Nothing there! George Lucas earned 111566834666.53162$$$! MainProcess pypet.storageservice.HDF5StorageService INFO I will use the hdf5 file `hdf5/example_01.hdf5`. MainProcess pypet.environment.Environment INFO Environment initialized. MainProcess pypet.environment.Environment INFO I am preparing the Trajectory for the experiment and initialise the store. MainProcess pypet.environment.Environment INFO Initialising the storage for the trajectory. MainProcess pypet.storageservice.HDF5StorageService INFO Initialising storage or updating meta data of Trajectory `Multiplication`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `Multiplication`. MainProcess pypet.environment.Environment INFO ************************************************************ STARTING runs of trajectory `Multiplication`. ************************************************************ MainProcess pypet INFO PROGRESS: Finished 0/12 runs [ ] 0.0% MainProcess pypet INFO ========================================= Starting single run #0 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #0 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 1/12 runs [= ] 8.3%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #1 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #1 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 2/12 runs [=== ] 16.7%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #2 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #2 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 3/12 runs [===== ] 25.0%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #3 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #3 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 4/12 runs [====== ] 33.3%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #4 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #4 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 5/12 runs [======== ] 41.7%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #5 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #5 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 6/12 runs [========== ] 50.0%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #6 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #6 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 7/12 runs [=========== ] 58.3%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #7 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #7 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 8/12 runs [============= ] 66.7%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #8 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #8 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 9/12 runs [=============== ] 75.0%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #9 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #9 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 10/12 runs [================ ] 83.3%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #10 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #10 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 11/12 runs [================== ] 91.7%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #11 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #11 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 12/12 runs [====================]100.0% MainProcess pypet.storageservice.HDF5StorageService INFO Initialising storage or updating meta data of Trajectory `Multiplication`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `Multiplication`. MainProcess pypet.environment.Environment INFO ************************************************************ FINISHED all runs of trajectory `Multiplication`. ************************************************************ MainProcess pypet.environment.Environment INFO ************************************************************ STARTING FINAL STORING of trajectory `Multiplication` ************************************************************ MainProcess pypet.storageservice.HDF5StorageService INFO Start storing Trajectory `Multiplication`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `config`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `parameters`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished storing Trajectory `Multiplication`. MainProcess pypet.environment.Environment INFO ************************************************************ FINISHED FINAL STORING of trajectory `Multiplication`. ************************************************************ MainProcess pypet.environment.Environment INFO All runs of trajectory `Multiplication` were completed successfully. MainProcess pypet.storageservice.HDF5StorageService INFO I will use the hdf5 file `hdf5/example_01.hdf5`. MainProcess pypet.storageservice.HDF5StorageService INFO Loading trajectory `Multiplication`. MainProcess pypet.storageservice.HDF5StorageService INFO Loading branch `config` in mode `2`. MainProcess pypet.storageservice.HDF5StorageService INFO Loading branch `parameters` in mode `2`. MainProcess pypet.storageservice.HDF5StorageService INFO Loading branch `results` in mode `2`. IMPORTED MATPLOTLIB WITH AGG The result of `run_00000001` is: 7 IMPORTED MATPLOTLIB WITH AGG IMPORTED MATPLOTLIB WITH AGG Computing all patterns [====================]100.0%Plotting all patterns [====================]100.0%MainProcess pypet.storageservice.HDF5StorageService INFO I will use the hdf5 file `/builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/examples/example_17_wrapping_an_existing_project/experiments/ca_patterns_pypet/all_patterns.hdf5`. MainProcess pypet.environment.Environment INFO Environment initialized. MainProcess root INFO Starting Simulation MainProcess pypet.environment.Environment INFO I am preparing the Trajectory for the experiment and initialise the store. MainProcess pypet.environment.Environment INFO Initialising the storage for the trajectory. MainProcess pypet.storageservice.HDF5StorageService INFO Initialising storage or updating meta data of Trajectory `cellular_automata`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `cellular_automata`. MainProcess pypet.environment.Environment INFO ************************************************************ STARTING runs of trajectory `cellular_automata`. ************************************************************ MainProcess pypet.storageservice.HDF5StorageService INFO Initialising storage or updating meta data of Trajectory `cellular_automata`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `cellular_automata`. IMPORTED MATPLOTLIB WITH AGG MainProcess pypet.environment.MultiprocContext INFO Starting the Storage Queue! MainProcess pypet.environment.Environment INFO Starting multiprocessing with at most 4 processes running at the same time. MainProcess pypet INFO PROGRESS: Finished 0/10 runs [ ] 0.0% MainProcess pypet INFO PROGRESS: Finished 1/10 runs [== ] 10.0%, remaining: 0:00:08 MainProcess pypet INFO PROGRESS: Finished 2/10 runs [==== ] 20.0%, remaining: 0:00:03 MainProcess pypet INFO PROGRESS: Finished 3/10 runs [====== ] 30.0%, remaining: 0:00:02 MainProcess pypet INFO PROGRESS: Finished 4/10 runs [======== ] 40.0%, remaining: 0:00:01 MainProcess pypet INFO PROGRESS: Finished 5/10 runs [========== ] 50.0%, remaining: 0:00:01 MainProcess pypet INFO PROGRESS: Finished 6/10 runs [============ ] 60.0%, remaining: 0:00:01 MainProcess pypet INFO PROGRESS: Finished 7/10 runs [============== ] 70.0%, remaining: 0:00:00 MainProcess pypet INFO PROGRESS: Finished 8/10 runs [================ ] 80.0%, remaining: 0:00:00 MainProcess pypet INFO PROGRESS: Finished 9/10 runs [================== ] 90.0%, remaining: 0:00:00 MainProcess pypet INFO PROGRESS: Finished 10/10 runs [====================]100.0% MainProcess pypet.environment.MultiprocContext INFO The Storage Queue will no longer accept new data. Hang in there for a little while. There still might be some data in the queue that needs to be stored. MainProcess pypet.environment.MultiprocContext INFO The Storage Queue has joined. MainProcess pypet.storageservice.HDF5StorageService INFO Initialising storage or updating meta data of Trajectory `cellular_automata`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `cellular_automata`. MainProcess pypet.environment.Environment INFO ************************************************************ FINISHED all runs of trajectory `cellular_automata`. ************************************************************ MainProcess pypet.environment.Environment INFO ************************************************************ STARTING FINAL STORING of trajectory `cellular_automata` ************************************************************ MainProcess pypet.storageservice.HDF5StorageService INFO Start storing Trajectory `cellular_automata`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `config`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `parameters`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished storing Trajectory `cellular_automata`. MainProcess pypet.environment.Environment INFO ************************************************************ FINISHED FINAL STORING of trajectory `cellular_automata`. ************************************************************ MainProcess pypet.environment.Environment INFO All runs of trajectory `cellular_automata` were completed successfully. MainProcess pypet.storageservice.HDF5StorageService INFO Loading trajectory `cellular_automata`. MainProcess pypet.storageservice.HDF5StorageService INFO Loading branch `config` in mode `2`. MainProcess pypet.storageservice.HDF5StorageService INFO Loading branch `parameters` in mode `2`. MainProcess pypet.storageservice.HDF5StorageService INFO Loading branch `results` in mode `2`. MainProcess root INFO Printing data MainProcess root INFO [== ] 10.0% MainProcess root INFO [==== ] 20.0%, remaining: 0:00:00 MainProcess root INFO [====== ] 30.0%, remaining: 0:00:00 MainProcess root INFO [======== ] 40.0%, remaining: 0:00:00 MainProcess root INFO [========== ] 50.0%, remaining: 0:00:00 MainProcess root INFO [============ ] 60.0%, remaining: 0:00:00 MainProcess root INFO [============== ] 70.0%, remaining: 0:00:00 MainProcess root INFO [================ ] 80.0%, remaining: 0:00:00 MainProcess root INFO [================== ] 90.0%, remaining: 0:00:00 MainProcess root INFO [====================]100.0% MainProcess STDOUT INFO Established redirection of `stdout`. MainProcess pypet.storageservice.HDF5StorageService INFO I will use the hdf5 file `hdf5/FiringRate.hdf5`. MainProcess pypet.environment.Environment INFO Environment initialized. MainProcess STDOUT INFO Adding Parameters MainProcess STDOUT INFO Adding exploration of I and tau_ref MainProcess pypet.environment.Environment INFO I am preparing the Trajectory for the experiment and initialise the store. MainProcess pypet.environment.Environment INFO Initialising the storage for the trajectory. MainProcess pypet.storageservice.HDF5StorageService INFO Initialising storage or updating meta data of Trajectory `FiringRate`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `FiringRate`. MainProcess pypet.environment.Environment INFO ************************************************************ STARTING runs of trajectory `FiringRate`. ************************************************************ MainProcess pypet.storageservice.HDF5StorageService INFO Initialising storage or updating meta data of Trajectory `FiringRate`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `FiringRate`. MainProcess pypet.environment.MultiprocContext INFO Starting the Storage Queue! MainProcess pypet.environment.Environment INFO Starting multiprocessing with at most 2 processes running at the same time. MainProcess pypet INFO PROGRESS: Finished 0/303 runs [ ] 0.0% MainProcess pypet INFO PROGRESS: Finished 16/303 runs [= ] 5.3%, remaining: 0:00:03 MainProcess pypet INFO PROGRESS: Finished 31/303 runs [== ] 10.2%, remaining: 0:00:02 MainProcess pypet INFO PROGRESS: Finished 46/303 runs [=== ] 15.2%, remaining: 0:00:02 MainProcess pypet INFO PROGRESS: Finished 61/303 runs [==== ] 20.1%, remaining: 0:00:02 MainProcess pypet INFO PROGRESS: Finished 76/303 runs [===== ] 25.1%, remaining: 0:00:02 MainProcess pypet INFO PROGRESS: Finished 91/303 runs [====== ] 30.0%, remaining: 0:00:02 MainProcess pypet INFO PROGRESS: Finished 107/303 runs [======= ] 35.3%, remaining: 0:00:01 MainProcess pypet INFO PROGRESS: Finished 122/303 runs [======== ] 40.3%, remaining: 0:00:01 MainProcess pypet INFO PROGRESS: Finished 137/303 runs [========= ] 45.2%, remaining: 0:00:01 MainProcess pypet INFO PROGRESS: Finished 152/303 runs [========== ] 50.2%, remaining: 0:00:01 MainProcess pypet INFO PROGRESS: Finished 167/303 runs [=========== ] 55.1%, remaining: 0:00:01 MainProcess pypet INFO PROGRESS: Finished 182/303 runs [============ ] 60.1%, remaining: 0:00:01 MainProcess pypet INFO PROGRESS: Finished 197/303 runs [============= ] 65.0%, remaining: 0:00:01 MainProcess pypet INFO PROGRESS: Finished 213/303 runs [============== ] 70.3%, remaining: 0:00:00 MainProcess pypet INFO PROGRESS: Finished 228/303 runs [=============== ] 75.2%, remaining: 0:00:00 MainProcess pypet INFO PROGRESS: Finished 243/303 runs [================ ] 80.2%, remaining: 0:00:00 MainProcess pypet INFO PROGRESS: Finished 258/303 runs [================= ] 85.1%, remaining: 0:00:00 MainProcess pypet INFO PROGRESS: Finished 273/303 runs [================== ] 90.1%, remaining: 0:00:00 MainProcess pypet INFO PROGRESS: Finished 288/303 runs [=================== ] 95.0%, remaining: 0:00:00 MainProcess pypet INFO PROGRESS: Finished 303/303 runs [====================]100.0% MainProcess pypet.environment.MultiprocContext INFO The Storage Queue will no longer accept new data. Hang in there for a little while. There still might be some data in the queue that needs to be stored. MainProcess pypet.environment.MultiprocContext INFO The Storage Queue has joined. IMPORTED MATPLOTLIB WITH AGG MainProcess pypet.environment.Environment INFO Performing POSTPROCESSING MainProcess pypet.storageservice.HDF5StorageService INFO Initialising storage or updating meta data of Trajectory `FiringRate`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `FiringRate`. MainProcess pypet.storageservice.HDF5StorageService INFO Initialising storage or updating meta data of Trajectory `FiringRate`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `FiringRate`. MainProcess pypet.environment.Environment INFO ************************************************************ FINISHED all runs of trajectory `FiringRate`. ************************************************************ MainProcess pypet.environment.Environment INFO ************************************************************ STARTING FINAL STORING of trajectory `FiringRate` ************************************************************ MainProcess pypet.storageservice.HDF5StorageService INFO Start storing Trajectory `FiringRate`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `config`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `parameters`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `results`. /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/storageservice.py:4210: PerformanceWarning: your performance may suffer as PyTables will pickle object types that it cannot map directly to c-types [inferred_type->floating,key->block0_values] [items->Index([5.0, 7.5, 10.0], dtype='float64')] self._hdf5store.put(name, data, **kwargs) MainProcess pypet.storageservice.HDF5StorageService INFO Finished storing Trajectory `FiringRate`. MainProcess pypet.environment.Environment INFO ************************************************************ FINISHED FINAL STORING of trajectory `FiringRate`. ************************************************************ MainProcess pypet.environment.Environment INFO All runs of trajectory `FiringRate` were completed successfully. IMPORTED MATPLOTLIB WITH AGG Disabled redirection of `stdout`. IMPORTED MATPLOTLIB WITH AGG MainProcess STDOUT INFO Established redirection of `stdout`. MainProcess pypet.storageservice.HDF5StorageService INFO I will use the hdf5 file `hdf5/FiringRate.hdf5`. MainProcess pypet.storageservice.HDF5StorageService INFO You specified ``overwrite_file=True``, so I deleted the file `hdf5/FiringRate.hdf5`. MainProcess pypet.environment.Environment INFO Environment initialized. MainProcess STDOUT INFO Adding Parameters MainProcess STDOUT INFO Adding exploration of I and tau_ref MainProcess pypet.environment.Environment INFO ************************************************************ STARTING PPREPROCESSING for trajectory `FiringRatePipeline` ************************************************************ MainProcess pypet.environment.Environment INFO I am preparing the Trajectory for the experiment and initialise the store. MainProcess pypet.environment.Environment INFO Initialising the storage for the trajectory. MainProcess pypet.storageservice.HDF5StorageService INFO Initialising storage or updating meta data of Trajectory `FiringRatePipeline`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `FiringRatePipeline`. MainProcess pypet.environment.Environment INFO ************************************************************ STARTING runs of trajectory `FiringRatePipeline`. ************************************************************ MainProcess pypet.storageservice.HDF5StorageService INFO Initialising storage or updating meta data of Trajectory `FiringRatePipeline`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `FiringRatePipeline`. MainProcess pypet.environment.Environment INFO Starting multiprocessing with at most 2 processes running at the same time. MainProcess pypet INFO PROGRESS: Finished 0/303 runs [ ] 0.0% MainProcess pypet INFO PROGRESS: Finished 16/303 runs [= ] 5.3%, remaining: 0:00:03 MainProcess pypet INFO PROGRESS: Finished 31/303 runs [== ] 10.2%, remaining: 0:00:03 MainProcess pypet INFO PROGRESS: Finished 46/303 runs [=== ] 15.2%, remaining: 0:00:03 MainProcess pypet INFO PROGRESS: Finished 61/303 runs [==== ] 20.1%, remaining: 0:00:02 MainProcess pypet INFO PROGRESS: Finished 76/303 runs [===== ] 25.1%, remaining: 0:00:02 MainProcess pypet INFO PROGRESS: Finished 91/303 runs [====== ] 30.0%, remaining: 0:00:02 MainProcess pypet INFO PROGRESS: Finished 107/303 runs [======= ] 35.3%, remaining: 0:00:02 MainProcess pypet INFO PROGRESS: Finished 122/303 runs [======== ] 40.3%, remaining: 0:00:02 MainProcess pypet INFO PROGRESS: Finished 137/303 runs [========= ] 45.2%, remaining: 0:00:01 MainProcess pypet INFO PROGRESS: Finished 152/303 runs [========== ] 50.2%, remaining: 0:00:01 MainProcess pypet INFO PROGRESS: Finished 167/303 runs [=========== ] 55.1%, remaining: 0:00:01 MainProcess pypet INFO PROGRESS: Finished 182/303 runs [============ ] 60.1%, remaining: 0:00:01 MainProcess pypet INFO PROGRESS: Finished 197/303 runs [============= ] 65.0%, remaining: 0:00:01 MainProcess pypet INFO PROGRESS: Finished 213/303 runs [============== ] 70.3%, remaining: 0:00:01 MainProcess pypet INFO PROGRESS: Finished 228/303 runs [=============== ] 75.2%, remaining: 0:00:00 MainProcess pypet INFO PROGRESS: Finished 243/303 runs [================ ] 80.2%, remaining: 0:00:00 MainProcess pypet INFO PROGRESS: Finished 258/303 runs [================= ] 85.1%, remaining: 0:00:00 MainProcess pypet INFO PROGRESS: Finished 273/303 runs [================== ] 90.1%, remaining: 0:00:00 MainProcess pypet INFO PROGRESS: Finished 288/303 runs [=================== ] 95.0%, remaining: 0:00:00 MainProcess pypet INFO PROGRESS: Finished 303/303 runs [====================]100.0% MainProcess pypet.environment.Environment INFO Performing POSTPROCESSING MainProcess pypet.storageservice.HDF5StorageService INFO Initialising storage or updating meta data of Trajectory `FiringRatePipeline`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `FiringRatePipeline`. MainProcess pypet.storageservice.HDF5StorageService INFO Initialising storage or updating meta data of Trajectory `FiringRatePipeline`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `FiringRatePipeline`. MainProcess pypet.environment.Environment INFO ************************************************************ FINISHED all runs of trajectory `FiringRatePipeline`. ************************************************************ MainProcess pypet.environment.Environment INFO ************************************************************ STARTING FINAL STORING of trajectory `FiringRatePipeline` ************************************************************ MainProcess pypet.storageservice.HDF5StorageService INFO Start storing Trajectory `FiringRatePipeline`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `config`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `parameters`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `results`. /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/storageservice.py:4210: PerformanceWarning: your performance may suffer as PyTables will pickle object types that it cannot map directly to c-types [inferred_type->floating,key->block0_values] [items->Index([5.0, 7.5, 10.0], dtype='float64')] self._hdf5store.put(name, data, **kwargs) MainProcess pypet.storageservice.HDF5StorageService INFO Finished storing Trajectory `FiringRatePipeline`. MainProcess pypet.environment.Environment INFO ************************************************************ FINISHED FINAL STORING of trajectory `FiringRatePipeline`. ************************************************************ MainProcess pypet.environment.Environment INFO All runs of trajectory `FiringRatePipeline` were completed successfully. IMPORTED MATPLOTLIB WITH AGG Disabled redirection of `stdout`. MainProcess pypet.storageservice.HDF5StorageService INFO I will use the hdf5 file `hdf5/Clustered_Network.hdf5`. MainProcess pypet.environment.Environment INFO Environment initialized. MainProcess pypet.brian2.network.NetworkManager INFO Adding Parameters of Components MainProcess pypet.brian2.network.NetworkManager INFO Adding Parameters of Analysers MainProcess pypet.brian2.network.NetworkManager INFO Adding Parameters of Runner MainProcess pypet.brian2.network.NetworkManager INFO Pre-Building Components MainProcess pypet.brian2.network.NetworkManager INFO Pre-Building Analysers MainProcess pypet.brian2.network.NetworkManager INFO Pre-Building NetworkRunner MainProcess pypet.storageservice.HDF5StorageService INFO Start storing Trajectory `Clustered_Network`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `config`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `parameters`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished storing Trajectory `Clustered_Network`. MainProcess pypet.environment.Environment INFO I am preparing the Trajectory for the experiment and initialise the store. MainProcess pypet.environment.Environment INFO Initialising the storage for the trajectory. MainProcess pypet.storageservice.HDF5StorageService INFO Initialising storage or updating meta data of Trajectory `Clustered_Network`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `Clustered_Network`. MainProcess pypet.environment.Environment INFO ************************************************************ STARTING runs of trajectory `Clustered_Network`. ************************************************************ MainProcess pypet.storageservice.HDF5StorageService INFO Initialising storage or updating meta data of Trajectory `Clustered_Network`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `Clustered_Network`. IMPORTED MATPLOTLIB WITH AGG MainProcess pypet.environment.MultiprocContext INFO Starting the Storage Queue! MainProcess pypet.environment.Environment INFO Starting multiprocessing with at most 4 processes running at the same time. MainProcess pypet INFO PROGRESS: Finished 0/7 runs [ ] 0.0% Connecting ii Connecting ei Connecting ie Connectiong ee Starting simulation at t=0. s for a duration of 0.5 s 0.5 s (100%) simulated in 1s Starting simulation at t=0.5 s for a duration of 1.5 s Connecting ii Connecting ei Connecting ie Connecting ee cluster #0 of 20 Connecting cluster with other neurons of higher index Connecting ee cluster #1 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #2 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #3 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #4 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #5 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #6 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #7 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #8 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #9 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #10 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #11 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #12 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #13 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #14 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #15 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #16 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #17 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #18 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #19 of 20 Connecting cluster with other neurons of lower index Starting simulation at t=0. s for a duration of 0.5 s Connecting ii Connecting ei Connecting ie Connecting ee cluster #0 of 20 Connecting cluster with other neurons of higher index Connecting ee cluster #1 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #2 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #3 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #4 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #5 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #6 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #7 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #8 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #9 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #10 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #11 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #12 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #13 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #14 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #15 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #16 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #17 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #18 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #19 of 20 Connecting cluster with other neurons of lower index Starting simulation at t=0. s for a duration of 0.5 s Connecting ii Connecting ei Connecting ie Connecting ee cluster #0 of 20 Connecting cluster with other neurons of higher index Connecting ee cluster #1 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #2 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #3 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #4 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #5 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #6 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #7 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #8 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #9 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #10 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #11 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #12 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #13 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #14 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #15 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #16 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #17 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #18 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #19 of 20 Connecting cluster with other neurons of lower index Starting simulation at t=0. s for a duration of 0.5 s 1.5 s (100%) simulated in 3s 0.5 s (100%) simulated in 2s 0.5 s (100%) simulated in 2s 0.5 s (100%) simulated in 3s Starting simulation at t=0.5 s for a duration of 1.5 s Plotting Current plot: /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/examples/example_24_large_scale_brian2_simulation/experiments/example_24/PLOTS/Clustered_Network/run_00000000/spike.png Current plot: /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/examples/example_24_large_scale_brian2_simulation/experiments/example_24/PLOTS/Clustered_Network/run_00000000/V.png Current plot: /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/examples/example_24_large_scale_brian2_simulation/experiments/example_24/PLOTS/Clustered_Network/run_00000000/I_syn_e.png Current plot: /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/examples/example_24_large_scale_brian2_simulation/experiments/example_24/PLOTS/Clustered_Network/run_00000000/I_syn_i.png R_ee: 1.000000, Mean FF: 0.481658 MainProcess pypet INFO PROGRESS: Finished 1/7 runs [== ] 14.3%, remaining: 0:00:41 Starting simulation at t=0.5 s for a duration of 1.5 s Starting simulation at t=0.5 s for a duration of 1.5 s Connecting ii Connecting ei Connecting ie Connecting ee cluster #0 of 20 Connecting cluster with other neurons of higher index Connecting ee cluster #1 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #2 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #3 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #4 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #5 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #6 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #7 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #8 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #9 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #10 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #11 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #12 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #13 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #14 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #15 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #16 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #17 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #18 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #19 of 20 Connecting cluster with other neurons of lower index Starting simulation at t=0. s for a duration of 0.5 s 0.5 s (100%) simulated in 2s Starting simulation at t=0.5 s for a duration of 1.5 s 1.5 s (100%) simulated in 9s 1.5 s (100%) simulated in 9s 1.4195 s (94%) simulated in 10s, estimated 1s remaining. Plotting Current plot: /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/examples/example_24_large_scale_brian2_simulation/experiments/example_24/PLOTS/Clustered_Network/run_00000001/spike.png Current plot: /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/examples/example_24_large_scale_brian2_simulation/experiments/example_24/PLOTS/Clustered_Network/run_00000001/V.png Current plot: /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/examples/example_24_large_scale_brian2_simulation/experiments/example_24/PLOTS/Clustered_Network/run_00000001/I_syn_e.png Current plot: /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/examples/example_24_large_scale_brian2_simulation/experiments/example_24/PLOTS/Clustered_Network/run_00000001/I_syn_i.png R_ee: 1.400000, Mean FF: 0.503096 MainProcess pypet INFO PROGRESS: Finished 2/7 runs [===== ] 28.6%, remaining: 0:00:44 Plotting Current plot: /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/examples/example_24_large_scale_brian2_simulation/experiments/example_24/PLOTS/Clustered_Network/run_00000002/spike.png Current plot: /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/examples/example_24_large_scale_brian2_simulation/experiments/example_24/PLOTS/Clustered_Network/run_00000002/V.png Current plot: /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/examples/example_24_large_scale_brian2_simulation/experiments/example_24/PLOTS/Clustered_Network/run_00000002/I_syn_e.png Current plot: /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/examples/example_24_large_scale_brian2_simulation/experiments/example_24/PLOTS/Clustered_Network/run_00000002/I_syn_i.png R_ee: 1.800000, Mean FF: 0.510827 MainProcess pypet INFO PROGRESS: Finished 3/7 runs [======== ] 42.9%, remaining: 0:00:23 1.5 s (100%) simulated in 10s Plotting Current plot: /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/examples/example_24_large_scale_brian2_simulation/experiments/example_24/PLOTS/Clustered_Network/run_00000003/spike.png Current plot: /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/examples/example_24_large_scale_brian2_simulation/experiments/example_24/PLOTS/Clustered_Network/run_00000003/V.png Current plot: /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/examples/example_24_large_scale_brian2_simulation/experiments/example_24/PLOTS/Clustered_Network/run_00000003/I_syn_e.png Current plot: /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/examples/example_24_large_scale_brian2_simulation/experiments/example_24/PLOTS/Clustered_Network/run_00000003/I_syn_i.png R_ee: 2.200000, Mean FF: 0.525761 MainProcess pypet INFO PROGRESS: Finished 4/7 runs [=========== ] 57.1%, remaining: 0:00:14 Connecting ii Connecting ei Connecting ie Connecting ee cluster #0 of 20 Connecting cluster with other neurons of higher index Connecting ee cluster #1 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #2 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #3 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #4 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #5 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #6 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #7 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #8 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #9 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #10 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #11 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #12 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #13 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #14 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #15 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #16 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #17 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #18 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #19 of 20 Connecting cluster with other neurons of lower index Starting simulation at t=0. s for a duration of 0.5 s Connecting ii Connecting ei Connecting ie Connecting ee cluster #0 of 20 Connecting cluster with other neurons of higher index Connecting ee cluster #1 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #2 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #3 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #4 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #5 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #6 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #7 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #8 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #9 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #10 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #11 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #12 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #13 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #14 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #15 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #16 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #17 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #18 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #19 of 20 Connecting cluster with other neurons of lower index Starting simulation at t=0. s for a duration of 0.5 s 0.5 s (100%) simulated in 1s Starting simulation at t=0.5 s for a duration of 1.5 s 1.5 s (100%) simulated in 9s 0.5 s (100%) simulated in 2s Plotting Current plot: /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/examples/example_24_large_scale_brian2_simulation/experiments/example_24/PLOTS/Clustered_Network/run_00000004/spike.png Current plot: /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/examples/example_24_large_scale_brian2_simulation/experiments/example_24/PLOTS/Clustered_Network/run_00000004/V.png Current plot: /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/examples/example_24_large_scale_brian2_simulation/experiments/example_24/PLOTS/Clustered_Network/run_00000004/I_syn_e.png Current plot: /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/examples/example_24_large_scale_brian2_simulation/experiments/example_24/PLOTS/Clustered_Network/run_00000004/I_syn_i.png R_ee: 2.600000, Mean FF: 0.593839 MainProcess pypet INFO PROGRESS: Finished 5/7 runs [============== ] 71.4%, remaining: 0:00:10 Starting simulation at t=0.5 s for a duration of 1.5 s 1.5 s (100%) simulated in 5s Plotting Current plot: /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/examples/example_24_large_scale_brian2_simulation/experiments/example_24/PLOTS/Clustered_Network/run_00000005/spike.png Current plot: /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/examples/example_24_large_scale_brian2_simulation/experiments/example_24/PLOTS/Clustered_Network/run_00000005/V.png Current plot: /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/examples/example_24_large_scale_brian2_simulation/experiments/example_24/PLOTS/Clustered_Network/run_00000005/I_syn_e.png Current plot: /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/examples/example_24_large_scale_brian2_simulation/experiments/example_24/PLOTS/Clustered_Network/run_00000005/I_syn_i.png R_ee: 3.000000, Mean FF: 0.548246 MainProcess pypet INFO PROGRESS: Finished 6/7 runs [================= ] 85.7%, remaining: 0:00:04 1.5 s (100%) simulated in 5s Plotting Current plot: /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/examples/example_24_large_scale_brian2_simulation/experiments/example_24/PLOTS/Clustered_Network/run_00000006/spike.png Current plot: /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/examples/example_24_large_scale_brian2_simulation/experiments/example_24/PLOTS/Clustered_Network/run_00000006/V.png Current plot: /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/examples/example_24_large_scale_brian2_simulation/experiments/example_24/PLOTS/Clustered_Network/run_00000006/I_syn_e.png Current plot: /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/examples/example_24_large_scale_brian2_simulation/experiments/example_24/PLOTS/Clustered_Network/run_00000006/I_syn_i.png R_ee: 3.400000, Mean FF: 0.204600 MainProcess pypet INFO PROGRESS: Finished 7/7 runs [====================]100.0% MainProcess pypet.environment.MultiprocContext INFO The Storage Queue will no longer accept new data. Hang in there for a little while. There still might be some data in the queue that needs to be stored. MainProcess pypet.environment.MultiprocContext INFO The Storage Queue has joined. MainProcess pypet.storageservice.HDF5StorageService INFO Initialising storage or updating meta data of Trajectory `Clustered_Network`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `Clustered_Network`. MainProcess pypet.environment.Environment INFO ************************************************************ FINISHED all runs of trajectory `Clustered_Network`. ************************************************************ MainProcess pypet.environment.Environment INFO ************************************************************ STARTING FINAL STORING of trajectory `Clustered_Network` ************************************************************ MainProcess pypet.storageservice.HDF5StorageService INFO Start storing Trajectory `Clustered_Network`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `config`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `parameters`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished storing Trajectory `Clustered_Network`. MainProcess pypet.environment.Environment INFO ************************************************************ FINISHED FINAL STORING of trajectory `Clustered_Network`. ************************************************************ MainProcess pypet.environment.Environment INFO All runs of trajectory `Clustered_Network` were completed successfully. WARNING The object 'neurongroup_1' is getting deleted, but was never included in a network. This probably means that you did not store the object reference in a variable, or that the variable was not used to construct the network. The object was created here (most recent call only): File '/builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/examples/example_24_large_scale_brian2_simulation/clusternet.py', line 220, in _build_model neurons_e = NeuronGroup(N=model.N_e, [brian2.core.base.unused_brian_object] WARNING The object 'neurongroup' is getting deleted, but was never included in a network. This probably means that you did not store the object reference in a variable, or that the variable was not used to construct the network. The object was created here (most recent call only): File '/builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/examples/example_24_large_scale_brian2_simulation/clusternet.py', line 211, in _build_model neurons_i = NeuronGroup(N=model.N_i, [brian2.core.base.unused_brian_object] MainProcess pypet.environment.Environment INFO Found storage service attached to Trajectory. Will use this storage service. MainProcess pypet.environment.Environment INFO Environment initialized. MainProcess pypet.storageservice.HDF5StorageService INFO Loading trajectory `Clustered_Network`. MainProcess pypet.storageservice.HDF5StorageService INFO Loading branch `config` in mode `2`. MainProcess pypet.storageservice.HDF5StorageService INFO Loading branch `derived_parameters` in mode `2`. MainProcess pypet.storageservice.HDF5StorageService INFO Loading branch `parameters` in mode `2`. MainProcess pypet.storageservice.HDF5StorageService INFO Loading branch `results` in mode `1`. IMPORTED MATPLOTLIB WITH AGG *** Running under Linux *** ----- I will skip the following tests: `{'21'}` ---- ########## Running example_06_parameter_presetting.py ########### #### Example successful #### ########## Running example_05_custom_parameter.py ########### #### Example successful #### ########## Running example_23_brian2_network.py ########### #### Example successful #### ---------- Skipping example_21_scoop_multiprocessing.py ---------- ########## Running example_20_using_deap_manual_runs.py ########### #### Example successful #### ########## Running example_19c_using_deap_with_post_processing.py ########### #### Example successful #### ########## Running example_19b_using_deap_less_overhead.py ########### #### Example successful #### ########## Running example_19_using_deap.py ########### #### Example successful #### ########## Running example_18_many_runs.py ########### #### Example successful #### ########## Running example_16_multiproc_context.py ########### #### Example successful #### ########## Running example_15_more_ways_to_add_data.py ########### #### Example successful #### ########## Running example_14_links.py ########### #### Example successful #### ########## Running example_12_sharing_data_between_processes.py ########### #### Example successful #### ########## Running example_10_get_items_from_all_runs.py ########### #### Example successful #### ########## Running example_09_large_results.py ########### #### Example successful #### ########## Running example_08_f_find_idx.py ########### #### Example successful #### ########## Running example_04_multiprocessing.py ########### #### Example successful #### ########## Running example_03_trajectory_merging.py ########### #### Example successful #### ########## Running example_02_trajectory_access_and_storage.py ########### #### Example successful #### ########## Running example_01_first_steps.py ########### #### Example successful #### ########## Running __init__.py ########### #### Example successful #### Running original #### Example successful #### Running pypet wrapping #### Example successful #### ########## Running example_13_post_processing ########### Running main #### Example successful #### Running analysis #### Example successful #### Running pipeline #### Example successful #### ########## Running example_24_large_scale_brian2_simulation ########### Running script #### Example successful #### Running analysis #### Example successful #### ~/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1 + popd + RPM_EC=0 ++ jobs -p + exit 0 Processing files: python3-pypet-0.6.1-7.fc42.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.Nsdq4d + umask 022 + cd /builddir/build/BUILD/python-pypet-0.6.1-build + cd pypet-0.6.1 + DOCDIR=/builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/share/doc/python3-pypet + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/share/doc/python3-pypet + cp -pr /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/README.md /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/share/doc/python3-pypet + RPM_EC=0 ++ jobs -p + exit 0 Provides: python-pypet = 0.6.1-7.fc42 python3-pypet = 0.6.1-7.fc42 python3.13-pypet = 0.6.1-7.fc42 python3.13dist(pypet) = 0.6.1 python3dist(pypet) = 0.6.1 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: python(abi) = 3.13 python3.13dist(numpy) python3.13dist(pandas) python3.13dist(scipy) python3.13dist(tables) Processing files: python-pypet-doc-0.6.1-7.fc42.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.pVeoDA + umask 022 + cd /builddir/build/BUILD/python-pypet-0.6.1-build + cd pypet-0.6.1 + DOCDIR=/builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/share/doc/python-pypet-doc + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/share/doc/python-pypet-doc + cp -pr /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/CHANGES.txt /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/share/doc/python-pypet-doc + cp -pr /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/_clean/examples /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/share/doc/python-pypet-doc + cp -pr /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/doc/build/latex/pypet.pdf /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/share/doc/python-pypet-doc + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.jmCbnk + umask 022 + cd /builddir/build/BUILD/python-pypet-0.6.1-build + cd pypet-0.6.1 + LICENSEDIR=/builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/share/licenses/python-pypet-doc + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/share/licenses/python-pypet-doc + cp -pr /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/LICENSE /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/share/licenses/python-pypet-doc + RPM_EC=0 ++ jobs -p + exit 0 Provides: python-pypet-doc = 0.6.1-7.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT Wrote: /builddir/build/SRPMS/python-pypet-0.6.1-7.fc42.src.rpm Wrote: /builddir/build/RPMS/python-pypet-doc-0.6.1-7.fc42.noarch.rpm Wrote: /builddir/build/RPMS/python3-pypet-0.6.1-7.fc42.noarch.rpm Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.YMxxZZ + umask 022 + cd /builddir/build/BUILD/python-pypet-0.6.1-build + test -d /builddir/build/BUILD/python-pypet-0.6.1-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/python-pypet-0.6.1-build + rm -rf /builddir/build/BUILD/python-pypet-0.6.1-build + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild python-pypet-0.6.1-7.fc42.src.rpm Finish: build phase for python-pypet-0.6.1-7.fc42.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1731606514.528742/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names INFO: Done(/var/lib/copr-rpmbuild/results/python-pypet-0.6.1-7.fc42.src.rpm) Config(child) 10 minutes 55 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "python-pypet-doc", "epoch": null, "version": "0.6.1", "release": "7.fc42", "arch": "noarch" }, { "name": "python-pypet", "epoch": null, "version": "0.6.1", "release": "7.fc42", "arch": "src" }, { "name": "python3-pypet", "epoch": null, "version": "0.6.1", "release": "7.fc42", "arch": "noarch" } ] } RPMResults finished