Mock Version: 4.1 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/python-hdmf.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1691479433.112034/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.kf_f1i6x:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.kf_f1i6x:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '714755432f934cf1886c7e004f5da641', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1691479433.112034/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.kf_f1i6x:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/python-hdmf.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1689897600 Wrote: /builddir/build/SRPMS/python-hdmf-3.7.0-2.fc39.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-hdmf.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1691479433.112034/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.kf_f1i6x:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueraiseExc=FalseprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.kf_f1i6x:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '3a45ae09db4a45f8993f5fdeaceb04b8', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1691479433.112034/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.kf_f1i6x:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-hdmf.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1689897600 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.65HI9b + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf hdmf-3.7.0 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/hdmf-3.7.0.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd hdmf-3.7.0 + rm -rf /builddir/build/BUILD/hdmf-3.7.0-SPECPARTS + /usr/bin/mkdir -p /builddir/build/BUILD/hdmf-3.7.0-SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0001-Patch-out-coverage-from-pytest-invocation.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/903.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + rm -vrf src/hdmf/common/hdmf-common-schema/ removed 'src/hdmf/common/hdmf-common-schema/docs/source/figures/ragged-array.png' removed 'src/hdmf/common/hdmf-common-schema/docs/source/figures/ragged-array-goal.png' removed directory 'src/hdmf/common/hdmf-common-schema/docs/source/figures' removed 'src/hdmf/common/hdmf-common-schema/docs/source/_static/theme_overrides.css' removed directory 'src/hdmf/common/hdmf-common-schema/docs/source/_static' removed 'src/hdmf/common/hdmf-common-schema/docs/source/software_process.rst' removed 'src/hdmf/common/hdmf-common-schema/docs/source/index.rst' removed 'src/hdmf/common/hdmf-common-schema/docs/source/hdmf_experimental_release_notes.rst' removed 'src/hdmf/common/hdmf-common-schema/docs/source/hdmf_common_release_notes.rst' removed 'src/hdmf/common/hdmf-common-schema/docs/source/format_release_notes.rst' removed 'src/hdmf/common/hdmf-common-schema/docs/source/format_description.rst' removed 'src/hdmf/common/hdmf-common-schema/docs/source/format.rst' removed 'src/hdmf/common/hdmf-common-schema/docs/source/credits.rst' removed 'src/hdmf/common/hdmf-common-schema/docs/source/conf_doc_autogen.py' removed 'src/hdmf/common/hdmf-common-schema/docs/source/conf.py' removed directory 'src/hdmf/common/hdmf-common-schema/docs/source' removed 'src/hdmf/common/hdmf-common-schema/docs/make.bat' removed 'src/hdmf/common/hdmf-common-schema/docs/Readme.md' removed 'src/hdmf/common/hdmf-common-schema/docs/Makefile' removed directory 'src/hdmf/common/hdmf-common-schema/docs' removed 'src/hdmf/common/hdmf-common-schema/common/table.yaml' removed 'src/hdmf/common/hdmf-common-schema/common/sparse.yaml' removed 'src/hdmf/common/hdmf-common-schema/common/resources.yaml' removed 'src/hdmf/common/hdmf-common-schema/common/namespace.yaml' removed 'src/hdmf/common/hdmf-common-schema/common/experimental.yaml' removed 'src/hdmf/common/hdmf-common-schema/common/base.yaml' removed directory 'src/hdmf/common/hdmf-common-schema/common' removed 'src/hdmf/common/hdmf-common-schema/.github/workflows/project_action.yml' removed 'src/hdmf/common/hdmf-common-schema/.github/workflows/codespell.yml' removed directory 'src/hdmf/common/hdmf-common-schema/.github/workflows' removed 'src/hdmf/common/hdmf-common-schema/.github/PULL_REQUEST_TEMPLATE/release.md' removed directory 'src/hdmf/common/hdmf-common-schema/.github/PULL_REQUEST_TEMPLATE' removed 'src/hdmf/common/hdmf-common-schema/.github/PULL_REQUEST_TEMPLATE.md' removed directory 'src/hdmf/common/hdmf-common-schema/.github' removed 'src/hdmf/common/hdmf-common-schema/setup.cfg' removed 'src/hdmf/common/hdmf-common-schema/requirements-doc.txt' removed 'src/hdmf/common/hdmf-common-schema/license.txt' removed 'src/hdmf/common/hdmf-common-schema/README.md' removed 'src/hdmf/common/hdmf-common-schema/Legal.txt' removed 'src/hdmf/common/hdmf-common-schema/.gitignore' removed 'src/hdmf/common/hdmf-common-schema/.git' removed 'src/hdmf/common/hdmf-common-schema/.codespellrc' removed directory 'src/hdmf/common/hdmf-common-schema/' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.piIiWl + umask 022 + cd /builddir/build/BUILD + cd hdmf-3.7.0 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/hdmf-3.7.0/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + TMPDIR=/builddir/build/BUILD/hdmf-3.7.0/.pyproject-builddir + RPM_TOXENV=py312 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/hdmf-3.7.0/pyproject-wheeldir --output /builddir/build/BUILD/python-hdmf-3.7.0-2.fc39.x86_64-pyproject-buildrequires -x zarr,tqdm Handling hatchling from build-system.requires Requirement not satisfied: hatchling Handling hatch-vcs from build-system.requires Requirement not satisfied: hatch-vcs Exiting dependency generation pass: build backend + cat /builddir/build/BUILD/python-hdmf-3.7.0-2.fc39.x86_64-pyproject-buildrequires + rm -rfv '*.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-hdmf-3.7.0-2.fc39.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-hdmf.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1691479433.112034/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.kf_f1i6x:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueraiseExc=FalseprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.kf_f1i6x:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'ed5de3dea1304d9d9714824b467c4d86', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1691479433.112034/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.kf_f1i6x:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-hdmf.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1689897600 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.mUlt5Z + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf hdmf-3.7.0 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/hdmf-3.7.0.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd hdmf-3.7.0 + rm -rf /builddir/build/BUILD/hdmf-3.7.0-SPECPARTS + /usr/bin/mkdir -p /builddir/build/BUILD/hdmf-3.7.0-SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0001-Patch-out-coverage-from-pytest-invocation.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/903.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + rm -vrf src/hdmf/common/hdmf-common-schema/ removed 'src/hdmf/common/hdmf-common-schema/docs/source/figures/ragged-array.png' removed 'src/hdmf/common/hdmf-common-schema/docs/source/figures/ragged-array-goal.png' removed directory 'src/hdmf/common/hdmf-common-schema/docs/source/figures' removed 'src/hdmf/common/hdmf-common-schema/docs/source/_static/theme_overrides.css' removed directory 'src/hdmf/common/hdmf-common-schema/docs/source/_static' removed 'src/hdmf/common/hdmf-common-schema/docs/source/software_process.rst' removed 'src/hdmf/common/hdmf-common-schema/docs/source/index.rst' removed 'src/hdmf/common/hdmf-common-schema/docs/source/hdmf_experimental_release_notes.rst' removed 'src/hdmf/common/hdmf-common-schema/docs/source/hdmf_common_release_notes.rst' removed 'src/hdmf/common/hdmf-common-schema/docs/source/format_release_notes.rst' removed 'src/hdmf/common/hdmf-common-schema/docs/source/format_description.rst' removed 'src/hdmf/common/hdmf-common-schema/docs/source/format.rst' removed 'src/hdmf/common/hdmf-common-schema/docs/source/credits.rst' removed 'src/hdmf/common/hdmf-common-schema/docs/source/conf_doc_autogen.py' removed 'src/hdmf/common/hdmf-common-schema/docs/source/conf.py' removed directory 'src/hdmf/common/hdmf-common-schema/docs/source' removed 'src/hdmf/common/hdmf-common-schema/docs/make.bat' removed 'src/hdmf/common/hdmf-common-schema/docs/Readme.md' removed 'src/hdmf/common/hdmf-common-schema/docs/Makefile' removed directory 'src/hdmf/common/hdmf-common-schema/docs' removed 'src/hdmf/common/hdmf-common-schema/common/table.yaml' removed 'src/hdmf/common/hdmf-common-schema/common/sparse.yaml' removed 'src/hdmf/common/hdmf-common-schema/common/resources.yaml' removed 'src/hdmf/common/hdmf-common-schema/common/namespace.yaml' removed 'src/hdmf/common/hdmf-common-schema/common/experimental.yaml' removed 'src/hdmf/common/hdmf-common-schema/common/base.yaml' removed directory 'src/hdmf/common/hdmf-common-schema/common' removed 'src/hdmf/common/hdmf-common-schema/.github/workflows/project_action.yml' removed 'src/hdmf/common/hdmf-common-schema/.github/workflows/codespell.yml' removed directory 'src/hdmf/common/hdmf-common-schema/.github/workflows' removed 'src/hdmf/common/hdmf-common-schema/.github/PULL_REQUEST_TEMPLATE/release.md' removed directory 'src/hdmf/common/hdmf-common-schema/.github/PULL_REQUEST_TEMPLATE' removed 'src/hdmf/common/hdmf-common-schema/.github/PULL_REQUEST_TEMPLATE.md' removed directory 'src/hdmf/common/hdmf-common-schema/.github' removed 'src/hdmf/common/hdmf-common-schema/setup.cfg' removed 'src/hdmf/common/hdmf-common-schema/requirements-doc.txt' removed 'src/hdmf/common/hdmf-common-schema/license.txt' removed 'src/hdmf/common/hdmf-common-schema/README.md' removed 'src/hdmf/common/hdmf-common-schema/Legal.txt' removed 'src/hdmf/common/hdmf-common-schema/.gitignore' removed 'src/hdmf/common/hdmf-common-schema/.git' removed 'src/hdmf/common/hdmf-common-schema/.codespellrc' removed directory 'src/hdmf/common/hdmf-common-schema/' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.tn8Cjq + umask 022 + cd /builddir/build/BUILD + cd hdmf-3.7.0 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/hdmf-3.7.0/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + TMPDIR=/builddir/build/BUILD/hdmf-3.7.0/.pyproject-builddir + RPM_TOXENV=py312 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/hdmf-3.7.0/pyproject-wheeldir --output /builddir/build/BUILD/python-hdmf-3.7.0-2.fc39.x86_64-pyproject-buildrequires -x zarr,tqdm Handling hatchling from build-system.requires Requirement satisfied: hatchling (installed: hatchling 1.18.0) Handling hatch-vcs from build-system.requires Requirement satisfied: hatch-vcs (installed: hatch-vcs 0.3.0) Handling h5py>=2.10 from hook generated metadata: Requires-Dist (hdmf) Requirement not satisfied: h5py>=2.10 Handling importlib-resources; python_version < '3.9' from hook generated metadata: Requires-Dist (hdmf) Ignoring alien requirement: importlib-resources; python_version < '3.9' Handling jsonschema>=2.6.0 from hook generated metadata: Requires-Dist (hdmf) Requirement not satisfied: jsonschema>=2.6.0 Handling numpy>=1.18 from hook generated metadata: Requires-Dist (hdmf) Requirement not satisfied: numpy>=1.18 Handling pandas>=1.0.5 from hook generated metadata: Requires-Dist (hdmf) Requirement not satisfied: pandas>=1.0.5 Handling ruamel-yaml>=0.16 from hook generated metadata: Requires-Dist (hdmf) Requirement not satisfied: ruamel-yaml>=0.16 Handling scipy>=1.4 from hook generated metadata: Requires-Dist (hdmf) Requirement not satisfied: scipy>=1.4 Handling linkml-runtime>=1.5.0; extra == 'linkml' from hook generated metadata: Requires-Dist (hdmf) Ignoring alien requirement: linkml-runtime>=1.5.0; extra == 'linkml' Handling tqdm>=4.41.0; extra == 'tqdm' from hook generated metadata: Requires-Dist (hdmf) Requirement satisfied: tqdm>=4.41.0; extra == 'tqdm' (installed: tqdm 4.65.0) Handling zarr>=2.12.0; extra == 'zarr' from hook generated metadata: Requires-Dist (hdmf) Requirement not satisfied: zarr>=2.12.0; extra == 'zarr' + cat /builddir/build/BUILD/python-hdmf-3.7.0-2.fc39.x86_64-pyproject-buildrequires + rm -rfv hdmf-3.7.0.dist-info/ removed 'hdmf-3.7.0.dist-info/METADATA' removed directory 'hdmf-3.7.0.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-hdmf-3.7.0-2.fc39.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-hdmf.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1691479433.112034/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.kf_f1i6x:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueraiseExc=FalseprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.kf_f1i6x:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '271e86586fe3426493bab7b13a90e676', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1691479433.112034/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.kf_f1i6x:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-hdmf.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1689897600 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.Fnuigm + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf hdmf-3.7.0 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/hdmf-3.7.0.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd hdmf-3.7.0 + rm -rf /builddir/build/BUILD/hdmf-3.7.0-SPECPARTS + /usr/bin/mkdir -p /builddir/build/BUILD/hdmf-3.7.0-SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0001-Patch-out-coverage-from-pytest-invocation.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/903.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + rm -vrf src/hdmf/common/hdmf-common-schema/ removed 'src/hdmf/common/hdmf-common-schema/docs/source/figures/ragged-array.png' removed 'src/hdmf/common/hdmf-common-schema/docs/source/figures/ragged-array-goal.png' removed directory 'src/hdmf/common/hdmf-common-schema/docs/source/figures' removed 'src/hdmf/common/hdmf-common-schema/docs/source/_static/theme_overrides.css' removed directory 'src/hdmf/common/hdmf-common-schema/docs/source/_static' removed 'src/hdmf/common/hdmf-common-schema/docs/source/software_process.rst' removed 'src/hdmf/common/hdmf-common-schema/docs/source/index.rst' removed 'src/hdmf/common/hdmf-common-schema/docs/source/hdmf_experimental_release_notes.rst' removed 'src/hdmf/common/hdmf-common-schema/docs/source/hdmf_common_release_notes.rst' removed 'src/hdmf/common/hdmf-common-schema/docs/source/format_release_notes.rst' removed 'src/hdmf/common/hdmf-common-schema/docs/source/format_description.rst' removed 'src/hdmf/common/hdmf-common-schema/docs/source/format.rst' removed 'src/hdmf/common/hdmf-common-schema/docs/source/credits.rst' removed 'src/hdmf/common/hdmf-common-schema/docs/source/conf_doc_autogen.py' removed 'src/hdmf/common/hdmf-common-schema/docs/source/conf.py' removed directory 'src/hdmf/common/hdmf-common-schema/docs/source' removed 'src/hdmf/common/hdmf-common-schema/docs/make.bat' removed 'src/hdmf/common/hdmf-common-schema/docs/Readme.md' removed 'src/hdmf/common/hdmf-common-schema/docs/Makefile' removed directory 'src/hdmf/common/hdmf-common-schema/docs' removed 'src/hdmf/common/hdmf-common-schema/common/table.yaml' removed 'src/hdmf/common/hdmf-common-schema/common/sparse.yaml' removed 'src/hdmf/common/hdmf-common-schema/common/resources.yaml' removed 'src/hdmf/common/hdmf-common-schema/common/namespace.yaml' removed 'src/hdmf/common/hdmf-common-schema/common/experimental.yaml' removed 'src/hdmf/common/hdmf-common-schema/common/base.yaml' removed directory 'src/hdmf/common/hdmf-common-schema/common' removed 'src/hdmf/common/hdmf-common-schema/.github/workflows/project_action.yml' removed 'src/hdmf/common/hdmf-common-schema/.github/workflows/codespell.yml' removed directory 'src/hdmf/common/hdmf-common-schema/.github/workflows' removed 'src/hdmf/common/hdmf-common-schema/.github/PULL_REQUEST_TEMPLATE/release.md' removed directory 'src/hdmf/common/hdmf-common-schema/.github/PULL_REQUEST_TEMPLATE' removed 'src/hdmf/common/hdmf-common-schema/.github/PULL_REQUEST_TEMPLATE.md' removed directory 'src/hdmf/common/hdmf-common-schema/.github' removed 'src/hdmf/common/hdmf-common-schema/setup.cfg' removed 'src/hdmf/common/hdmf-common-schema/requirements-doc.txt' removed 'src/hdmf/common/hdmf-common-schema/license.txt' removed 'src/hdmf/common/hdmf-common-schema/README.md' removed 'src/hdmf/common/hdmf-common-schema/Legal.txt' removed 'src/hdmf/common/hdmf-common-schema/.gitignore' removed 'src/hdmf/common/hdmf-common-schema/.git' removed 'src/hdmf/common/hdmf-common-schema/.codespellrc' removed directory 'src/hdmf/common/hdmf-common-schema/' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.UHVvKM + umask 022 + cd /builddir/build/BUILD + cd hdmf-3.7.0 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/hdmf-3.7.0/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + TMPDIR=/builddir/build/BUILD/hdmf-3.7.0/.pyproject-builddir + RPM_TOXENV=py312 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/hdmf-3.7.0/pyproject-wheeldir --output /builddir/build/BUILD/python-hdmf-3.7.0-2.fc39.x86_64-pyproject-buildrequires -x zarr,tqdm Handling hatchling from build-system.requires Requirement satisfied: hatchling (installed: hatchling 1.18.0) Handling hatch-vcs from build-system.requires Requirement satisfied: hatch-vcs (installed: hatch-vcs 0.3.0) Handling h5py>=2.10 from hook generated metadata: Requires-Dist (hdmf) Requirement satisfied: h5py>=2.10 (installed: h5py 3.8.0) Handling importlib-resources; python_version < '3.9' from hook generated metadata: Requires-Dist (hdmf) Ignoring alien requirement: importlib-resources; python_version < '3.9' Handling jsonschema>=2.6.0 from hook generated metadata: Requires-Dist (hdmf) Requirement satisfied: jsonschema>=2.6.0 (installed: jsonschema 4.17.3) Handling numpy>=1.18 from hook generated metadata: Requires-Dist (hdmf) Requirement satisfied: numpy>=1.18 (installed: numpy 1.24.4) Handling pandas>=1.0.5 from hook generated metadata: Requires-Dist (hdmf) Requirement satisfied: pandas>=1.0.5 (installed: pandas 1.5.3) Handling ruamel-yaml>=0.16 from hook generated metadata: Requires-Dist (hdmf) Requirement satisfied: ruamel-yaml>=0.16 (installed: ruamel-yaml 0.17.32) Handling scipy>=1.4 from hook generated metadata: Requires-Dist (hdmf) Requirement satisfied: scipy>=1.4 (installed: scipy 1.11.1) Handling linkml-runtime>=1.5.0; extra == 'linkml' from hook generated metadata: Requires-Dist (hdmf) Ignoring alien requirement: linkml-runtime>=1.5.0; extra == 'linkml' Handling tqdm>=4.41.0; extra == 'tqdm' from hook generated metadata: Requires-Dist (hdmf) Requirement satisfied: tqdm>=4.41.0; extra == 'tqdm' (installed: tqdm 4.65.0) Handling zarr>=2.12.0; extra == 'zarr' from hook generated metadata: Requires-Dist (hdmf) Requirement satisfied: zarr>=2.12.0; extra == 'zarr' (installed: zarr 2.16.0) + cat /builddir/build/BUILD/python-hdmf-3.7.0-2.fc39.x86_64-pyproject-buildrequires + rm -rfv hdmf-3.7.0.dist-info/ removed 'hdmf-3.7.0.dist-info/METADATA' removed directory 'hdmf-3.7.0.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-hdmf-3.7.0-2.fc39.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -ba --noprep --target x86_64 --nodeps /builddir/build/SPECS/python-hdmf.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1691479433.112034/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.kf_f1i6x:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.kf_f1i6x:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'a79e41c4afc84ccca4b2aff6c5abc371', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1691479433.112034/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.kf_f1i6x:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -ba --noprep --target x86_64 --nodeps /builddir/build/SPECS/python-hdmf.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1689897600 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.U21dB2 + umask 022 + cd /builddir/build/BUILD + cd hdmf-3.7.0 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/hdmf-3.7.0/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + TMPDIR=/builddir/build/BUILD/hdmf-3.7.0/.pyproject-builddir + RPM_TOXENV=py312 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/hdmf-3.7.0/pyproject-wheeldir --output /builddir/build/BUILD/python-hdmf-3.7.0-2.fc39.x86_64-pyproject-buildrequires -x zarr,tqdm Handling hatchling from build-system.requires Requirement satisfied: hatchling (installed: hatchling 1.18.0) Handling hatch-vcs from build-system.requires Requirement satisfied: hatch-vcs (installed: hatch-vcs 0.3.0) Handling h5py>=2.10 from hook generated metadata: Requires-Dist (hdmf) Requirement satisfied: h5py>=2.10 (installed: h5py 3.8.0) Handling importlib-resources; python_version < '3.9' from hook generated metadata: Requires-Dist (hdmf) Ignoring alien requirement: importlib-resources; python_version < '3.9' Handling jsonschema>=2.6.0 from hook generated metadata: Requires-Dist (hdmf) Requirement satisfied: jsonschema>=2.6.0 (installed: jsonschema 4.17.3) Handling numpy>=1.18 from hook generated metadata: Requires-Dist (hdmf) Requirement satisfied: numpy>=1.18 (installed: numpy 1.24.4) Handling pandas>=1.0.5 from hook generated metadata: Requires-Dist (hdmf) Requirement satisfied: pandas>=1.0.5 (installed: pandas 1.5.3) Handling ruamel-yaml>=0.16 from hook generated metadata: Requires-Dist (hdmf) Requirement satisfied: ruamel-yaml>=0.16 (installed: ruamel-yaml 0.17.32) Handling scipy>=1.4 from hook generated metadata: Requires-Dist (hdmf) Requirement satisfied: scipy>=1.4 (installed: scipy 1.11.1) Handling linkml-runtime>=1.5.0; extra == 'linkml' from hook generated metadata: Requires-Dist (hdmf) Ignoring alien requirement: linkml-runtime>=1.5.0; extra == 'linkml' Handling tqdm>=4.41.0; extra == 'tqdm' from hook generated metadata: Requires-Dist (hdmf) Requirement satisfied: tqdm>=4.41.0; extra == 'tqdm' (installed: tqdm 4.65.0) Handling zarr>=2.12.0; extra == 'zarr' from hook generated metadata: Requires-Dist (hdmf) Requirement satisfied: zarr>=2.12.0; extra == 'zarr' (installed: zarr 2.16.0) + cat /builddir/build/BUILD/python-hdmf-3.7.0-2.fc39.x86_64-pyproject-buildrequires + rm -rfv hdmf-3.7.0.dist-info/ removed 'hdmf-3.7.0.dist-info/METADATA' removed directory 'hdmf-3.7.0.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.oQM1cT + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd hdmf-3.7.0 + mkdir -p /builddir/build/BUILD/hdmf-3.7.0/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + TMPDIR=/builddir/build/BUILD/hdmf-3.7.0/.pyproject-builddir + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_wheel.py /builddir/build/BUILD/hdmf-3.7.0/pyproject-wheeldir Processing /builddir/build/BUILD/hdmf-3.7.0 Preparing metadata (pyproject.toml): started Running command Preparing metadata (pyproject.toml) Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: hdmf Building wheel for hdmf (pyproject.toml): started Running command Building wheel for hdmf (pyproject.toml) Building wheel for hdmf (pyproject.toml): finished with status 'done' Created wheel for hdmf: filename=hdmf-3.7.0-py3-none-any.whl size=188862 sha256=4f01ee2ae977ff7e9dc7b68785659b00809a8277bf0f3f3ad744b4974d7611c9 Stored in directory: /builddir/.cache/pip/wheels/98/64/e8/04743df39e90eff33ab35e26335b987db364cf6c911261d29b Successfully built hdmf + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.wi2eMT + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/python-hdmf-3.7.0-2.fc39.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/python-hdmf-3.7.0-2.fc39.x86_64 ++ dirname /builddir/build/BUILDROOT/python-hdmf-3.7.0-2.fc39.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/python-hdmf-3.7.0-2.fc39.x86_64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd hdmf-3.7.0 ++ ls /builddir/build/BUILD/hdmf-3.7.0/pyproject-wheeldir/hdmf-3.7.0-py3-none-any.whl ++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/' ++ xargs basename --multiple + specifier=hdmf==3.7.0 + TMPDIR=/builddir/build/BUILD/hdmf-3.7.0/.pyproject-builddir + /usr/bin/python3 -m pip install --root /builddir/build/BUILDROOT/python-hdmf-3.7.0-2.fc39.x86_64 --prefix /usr --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/hdmf-3.7.0/pyproject-wheeldir hdmf==3.7.0 Using pip 23.1.2 from /usr/lib/python3.12/site-packages/pip (python 3.12) Looking in links: /builddir/build/BUILD/hdmf-3.7.0/pyproject-wheeldir Processing ./pyproject-wheeldir/hdmf-3.7.0-py3-none-any.whl Installing collected packages: hdmf Creating /builddir/build/BUILDROOT/python-hdmf-3.7.0-2.fc39.x86_64/usr/bin changing mode of /builddir/build/BUILDROOT/python-hdmf-3.7.0-2.fc39.x86_64/usr/bin/validate_hdmf_spec to 755 Successfully installed hdmf-3.7.0 + '[' -d /builddir/build/BUILDROOT/python-hdmf-3.7.0-2.fc39.x86_64/usr/bin ']' + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP /builddir/build/BUILDROOT/python-hdmf-3.7.0-2.fc39.x86_64/usr/bin/validate_hdmf_spec /builddir/build/BUILDROOT/python-hdmf-3.7.0-2.fc39.x86_64/usr/bin/validate_hdmf_spec: updating + rm -rfv /builddir/build/BUILDROOT/python-hdmf-3.7.0-2.fc39.x86_64/usr/bin/__pycache__ + rm -f /builddir/build/BUILD/python-hdmf-3.7.0-2.fc39.x86_64-pyproject-ghost-distinfo + site_dirs=() + '[' -d /builddir/build/BUILDROOT/python-hdmf-3.7.0-2.fc39.x86_64/usr/lib/python3.12/site-packages ']' + site_dirs+=("/usr/lib/python3.12/site-packages") + '[' /builddir/build/BUILDROOT/python-hdmf-3.7.0-2.fc39.x86_64/usr/lib64/python3.12/site-packages '!=' /builddir/build/BUILDROOT/python-hdmf-3.7.0-2.fc39.x86_64/usr/lib/python3.12/site-packages ']' + '[' -d /builddir/build/BUILDROOT/python-hdmf-3.7.0-2.fc39.x86_64/usr/lib64/python3.12/site-packages ']' + for site_dir in ${site_dirs[@]} + for distinfo in /builddir/build/BUILDROOT/python-hdmf-3.7.0-2.fc39.x86_64$site_dir/*.dist-info + echo '%ghost /usr/lib/python3.12/site-packages/hdmf-3.7.0.dist-info' + sed -i s/pip/rpm/ /builddir/build/BUILDROOT/python-hdmf-3.7.0-2.fc39.x86_64/usr/lib/python3.12/site-packages/hdmf-3.7.0.dist-info/INSTALLER + PYTHONPATH=/usr/lib/rpm/redhat + /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILDROOT/python-hdmf-3.7.0-2.fc39.x86_64 --record /builddir/build/BUILDROOT/python-hdmf-3.7.0-2.fc39.x86_64/usr/lib/python3.12/site-packages/hdmf-3.7.0.dist-info/RECORD --output /builddir/build/BUILD/python-hdmf-3.7.0-2.fc39.x86_64-pyproject-record + rm -fv /builddir/build/BUILDROOT/python-hdmf-3.7.0-2.fc39.x86_64/usr/lib/python3.12/site-packages/hdmf-3.7.0.dist-info/RECORD removed '/builddir/build/BUILDROOT/python-hdmf-3.7.0-2.fc39.x86_64/usr/lib/python3.12/site-packages/hdmf-3.7.0.dist-info/RECORD' + rm -fv /builddir/build/BUILDROOT/python-hdmf-3.7.0-2.fc39.x86_64/usr/lib/python3.12/site-packages/hdmf-3.7.0.dist-info/REQUESTED removed '/builddir/build/BUILDROOT/python-hdmf-3.7.0-2.fc39.x86_64/usr/lib/python3.12/site-packages/hdmf-3.7.0.dist-info/REQUESTED' ++ wc -l /builddir/build/BUILD/python-hdmf-3.7.0-2.fc39.x86_64-pyproject-ghost-distinfo ++ cut -f1 '-d ' + lines=1 + '[' 1 -ne 1 ']' + RPM_PERCENTAGES_COUNT=2 + /usr/bin/python3 /usr/lib/rpm/redhat/pyproject_save_files.py --output-files /builddir/build/BUILD/python-hdmf-3.7.0-2.fc39.x86_64-pyproject-files --output-modules /builddir/build/BUILD/python-hdmf-3.7.0-2.fc39.x86_64-pyproject-modules --buildroot /builddir/build/BUILDROOT/python-hdmf-3.7.0-2.fc39.x86_64 --sitelib /usr/lib/python3.12/site-packages --sitearch /usr/lib64/python3.12/site-packages --python-version 3.12 --pyproject-record /builddir/build/BUILD/python-hdmf-3.7.0-2.fc39.x86_64-pyproject-record --prefix /usr hdmf + ln -s /usr/share/hdmf-common-schema/ /builddir/build/BUILDROOT/python-hdmf-3.7.0-2.fc39.x86_64/usr/lib/python3.12/site-packages/hdmf/common/hdmf-common-schema + install -t /builddir/build/BUILDROOT/python-hdmf-3.7.0-2.fc39.x86_64/usr/share/man/man1 -D -p -m 0644 /builddir/build/SOURCES/validate_hdmf_spec.1 + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 3.7.0-2.fc39 --unique-debug-suffix -3.7.0-2.fc39.x86_64 --unique-debug-src-base python-hdmf-3.7.0-2.fc39.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/hdmf-3.7.0 find-debuginfo: starting Extracting debug info from 0 files Creating .debug symlinks for symlinks to ELF files find: 'debug': No such file or directory find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs *** WARNING: ./usr/lib/python3.12/site-packages/hdmf/testing/validate_spec.py is executable but has no shebang, removing executable bit + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 Bytecompiling .py files below /builddir/build/BUILDROOT/python-hdmf-3.7.0-2.fc39.x86_64/usr/lib/python3.12 using python3.12 + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.KdWdzj + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd hdmf-3.7.0 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + PATH=/builddir/build/BUILDROOT/python-hdmf-3.7.0-2.fc39.x86_64/usr/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin + PYTHONPATH=/builddir/build/BUILDROOT/python-hdmf-3.7.0-2.fc39.x86_64/usr/lib64/python3.12/site-packages:/builddir/build/BUILDROOT/python-hdmf-3.7.0-2.fc39.x86_64/usr/lib/python3.12/site-packages + PYTHONDONTWRITEBYTECODE=1 + PYTEST_ADDOPTS=' --ignore=/builddir/build/BUILD/hdmf-3.7.0/.pyproject-builddir' + PYTEST_XDIST_AUTO_NUM_WORKERS=2 + /usr/bin/pytest ============================= test session starts ============================== platform linux -- Python 3.12.0b4, pytest-7.3.2, pluggy-1.2.0 rootdir: /builddir/build/BUILD/hdmf-3.7.0 configfile: pyproject.toml collected 1436 items tests/unit/test_container.py ..............................ss...ss..ss.. [ 2%] .............. [ 3%] tests/unit/test_io_hdf5.py ...... [ 4%] tests/unit/test_io_hdf5_h5tools.py ..................................... [ 6%] .......................ss............................................... [ 11%] ............................................................... [ 16%] tests/unit/test_io_hdf5_streaming.py s [ 16%] tests/unit/test_multicontainerinterface.py ............................. [ 18%] ................. [ 19%] tests/unit/test_query.py .................. [ 20%] tests/unit/test_table.py .......... [ 21%] tests/unit/test_term_set.py ssssss [ 22%] tests/unit/back_compat_tests/test_1_1_0.py .. [ 22%] tests/unit/build_tests/test_builder.py ................................. [ 24%] ................... [ 25%] tests/unit/build_tests/test_classgenerator.py .......................... [ 27%] ............... [ 28%] tests/unit/build_tests/test_convert_dtype.py ..................... [ 30%] tests/unit/build_tests/test_io_manager.py ................ [ 31%] tests/unit/build_tests/test_io_map.py ............................x..... [ 33%] .............. [ 34%] tests/unit/build_tests/test_io_map_data.py ............. [ 35%] tests/unit/build_tests/mapper_tests/test_build.py ...... [ 35%] tests/unit/build_tests/mapper_tests/test_build_datetime.py .... [ 36%] tests/unit/build_tests/mapper_tests/test_build_quantity.py ............. [ 37%] .................................................... [ 40%] tests/unit/common/test_alignedtable.py .......................... [ 42%] tests/unit/common/test_common.py . [ 42%] tests/unit/common/test_common_io.py ..... [ 42%] tests/unit/common/test_generate_table.py ......... [ 43%] tests/unit/common/test_linkedtables.py ........................... [ 45%] tests/unit/common/test_multi.py .. [ 45%] tests/unit/common/test_resources.py ..........sssss..................... [ 48%] ............................... [ 50%] tests/unit/common/test_sparse.py ................... [ 51%] tests/unit/common/test_table.py ss...........sss........................ [ 54%] .............................................s.......................... [ 59%] .........................................s.............................. [ 64%] ........................................................................ [ 69%] ..... [ 69%] tests/unit/spec_tests/test_attribute_spec.py .......... [ 70%] tests/unit/spec_tests/test_dataset_spec.py ................. [ 71%] tests/unit/spec_tests/test_dtype_spec.py ............. [ 72%] tests/unit/spec_tests/test_group_spec.py ............................... [ 74%] ................ [ 75%] tests/unit/spec_tests/test_link_spec.py ..... [ 76%] tests/unit/spec_tests/test_load_namespace.py .............. [ 77%] tests/unit/spec_tests/test_ref_spec.py ... [ 77%] tests/unit/spec_tests/test_spec_catalog.py ............ [ 78%] tests/unit/spec_tests/test_spec_write.py .......... [ 78%] tests/unit/utils_test/test_core_DataChunk.py ... [ 79%] tests/unit/utils_test/test_core_DataChunkIterator.py ................... [ 80%] ............ [ 81%] tests/unit/utils_test/test_core_DataIO.py ...... [ 81%] tests/unit/utils_test/test_core_GenericDataChunkIterator.py ............ [ 82%] ..............s [ 83%] tests/unit/utils_test/test_core_ShapeValidator.py ............... [ 84%] tests/unit/utils_test/test_docval.py ................................... [ 86%] ...................................................................... [ 91%] tests/unit/utils_test/test_labelleddict.py ............................. [ 93%] .. [ 94%] tests/unit/utils_test/test_utils.py .................. [ 95%] tests/unit/validator_tests/test_errors.py ........ [ 95%] tests/unit/validator_tests/test_validate.py ............................ [ 97%] ........................s....... [100%] =============================== warnings summary =============================== ../../../../usr/lib/python3.12/site-packages/pytz/tzinfo.py:27 /usr/lib/python3.12/site-packages/pytz/tzinfo.py:27: DeprecationWarning: datetime.utcfromtimestamp() is deprecated and scheduled for removal in a future version. Use timezone-aware objects to represent datetimes in UTC: datetime.fromtimestamp(timestamp, datetime.UTC). _epoch = datetime.utcfromtimestamp(0) tests/unit/test_container.py: 1 warning tests/unit/test_io_hdf5_h5tools.py: 4 warnings tests/unit/common/test_resources.py: 63 warnings /builddir/build/BUILDROOT/python-hdmf-3.7.0-2.fc39.x86_64/usr/lib/python3.12/site-packages/hdmf/container.py:210: UserWarning: ExternalResources is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) tests/unit/test_container.py::TestContainer::test_set_parent /usr/lib/python3.12/site-packages/_pytest/unraisableexception.py:78: PytestUnraisableExceptionWarning: Exception ignored in: Traceback (most recent call last): File "/builddir/build/BUILDROOT/python-hdmf-3.7.0-2.fc39.x86_64/usr/lib/python3.12/site-packages/hdmf/container.py", line 197, in __del__ del self.__read_io ^^^^^^^^^^^^^^ AttributeError: 'Container' object has no attribute '_AbstractContainer__read_io' warnings.warn(pytest.PytestUnraisableExceptionWarning(msg)) tests/unit/test_container.py::TestContainer::test_slash_restriction /usr/lib/python3.12/site-packages/_pytest/unraisableexception.py:78: PytestUnraisableExceptionWarning: Exception ignored in: ValueError: name 'bad/name' cannot contain '/' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/builddir/build/BUILDROOT/python-hdmf-3.7.0-2.fc39.x86_64/usr/lib/python3.12/site-packages/hdmf/container.py", line 197, in __del__ del self.__read_io ^^^^^^^^^^^^^^ AttributeError: 'Container' object has no attribute '_AbstractContainer__read_io' warnings.warn(pytest.PytestUnraisableExceptionWarning(msg)) tests/unit/build_tests/test_classgenerator.py::TestDynamicContainer::test_dynamic_container_composition tests/unit/build_tests/test_classgenerator.py::TestDynamicContainer::test_dynamic_container_composition_reverse_order /usr/lib/python3.12/site-packages/_pytest/unraisableexception.py:78: PytestUnraisableExceptionWarning: Exception ignored in: TypeError: CustomClassGenerator.set_init..__init__: incorrect type for 'baz2' (got 'Bar', expected 'Baz2') During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/builddir/build/BUILDROOT/python-hdmf-3.7.0-2.fc39.x86_64/usr/lib/python3.12/site-packages/hdmf/container.py", line 197, in __del__ del self.__read_io ^^^^^^^^^^^^^^ AttributeError: 'Baz1' object has no attribute '_AbstractContainer__read_io' warnings.warn(pytest.PytestUnraisableExceptionWarning(msg)) tests/unit/build_tests/test_classgenerator.py::TestDynamicContainer::test_dynamic_container_constructor_name /usr/lib/python3.12/site-packages/_pytest/unraisableexception.py:78: PytestUnraisableExceptionWarning: Exception ignored in: TypeError: CustomClassGenerator.set_init..__init__: unrecognized argument: 'name' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/builddir/build/BUILDROOT/python-hdmf-3.7.0-2.fc39.x86_64/usr/lib/python3.12/site-packages/hdmf/container.py", line 197, in __del__ del self.__read_io ^^^^^^^^^^^^^^ AttributeError: 'Baz' object has no attribute '_AbstractContainer__read_io' warnings.warn(pytest.PytestUnraisableExceptionWarning(msg)) tests/unit/build_tests/test_classgenerator.py::TestDynamicContainer::test_multi_container_spec_one_or_more_missing /usr/lib/python3.12/site-packages/_pytest/unraisableexception.py:78: PytestUnraisableExceptionWarning: Exception ignored in: TypeError: MCIClassGenerator.set_init..__init__: missing argument 'bars' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/builddir/build/BUILDROOT/python-hdmf-3.7.0-2.fc39.x86_64/usr/lib/python3.12/site-packages/hdmf/container.py", line 197, in __del__ del self.__read_io ^^^^^^^^^^^^^^ AttributeError: 'Multi' object has no attribute '_AbstractContainer__read_io' warnings.warn(pytest.PytestUnraisableExceptionWarning(msg)) tests/unit/common/test_alignedtable.py::TestAlignedDynamicTableContainer::test_init_categories_without_category_tables_error /usr/lib/python3.12/site-packages/_pytest/unraisableexception.py:78: PytestUnraisableExceptionWarning: Exception ignored in: ValueError: Categories provided but no category_tables given During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/builddir/build/BUILDROOT/python-hdmf-3.7.0-2.fc39.x86_64/usr/lib/python3.12/site-packages/hdmf/container.py", line 197, in __del__ del self.__read_io ^^^^^^^^^^^^^^ AttributeError: 'AlignedDynamicTable' object has no attribute '_AbstractContainer__read_io' warnings.warn(pytest.PytestUnraisableExceptionWarning(msg)) tests/unit/common/test_alignedtable.py::TestAlignedDynamicTableContainer::test_init_length_mismatch_between_categories_and_category_tables /usr/lib/python3.12/site-packages/_pytest/unraisableexception.py:78: PytestUnraisableExceptionWarning: Exception ignored in: ValueError: 0 category_tables given but 2 categories specified During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/builddir/build/BUILDROOT/python-hdmf-3.7.0-2.fc39.x86_64/usr/lib/python3.12/site-packages/hdmf/container.py", line 197, in __del__ del self.__read_io ^^^^^^^^^^^^^^ AttributeError: 'AlignedDynamicTable' object has no attribute '_AbstractContainer__read_io' warnings.warn(pytest.PytestUnraisableExceptionWarning(msg)) tests/unit/common/test_alignedtable.py::TestAlignedDynamicTableContainer::test_init_with_bad_custom_categories /usr/lib/python3.12/site-packages/_pytest/unraisableexception.py:78: PytestUnraisableExceptionWarning: Exception ignored in: ValueError: Category table with index 1 is not a DynamicTable During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/builddir/build/BUILDROOT/python-hdmf-3.7.0-2.fc39.x86_64/usr/lib/python3.12/site-packages/hdmf/container.py", line 197, in __del__ del self.__read_io ^^^^^^^^^^^^^^ AttributeError: 'AlignedDynamicTable' object has no attribute '_AbstractContainer__read_io' warnings.warn(pytest.PytestUnraisableExceptionWarning(msg)) tests/unit/common/test_alignedtable.py::TestAlignedDynamicTableContainer::test_nested_aligned_dynamic_table_not_allowed /usr/lib/python3.12/site-packages/_pytest/unraisableexception.py:78: PytestUnraisableExceptionWarning: Exception ignored in: ValueError: Category table with index 0 is an AlignedDynamicTable. Nesting of AlignedDynamicTable is currently not supported. During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/builddir/build/BUILDROOT/python-hdmf-3.7.0-2.fc39.x86_64/usr/lib/python3.12/site-packages/hdmf/container.py", line 197, in __del__ del self.__read_io ^^^^^^^^^^^^^^ AttributeError: 'AlignedDynamicTable' object has no attribute '_AbstractContainer__read_io' warnings.warn(pytest.PytestUnraisableExceptionWarning(msg)) tests/unit/common/test_linkedtables.py: 11 warnings tests/unit/common/test_table.py: 22 warnings /builddir/build/BUILDROOT/python-hdmf-3.7.0-2.fc39.x86_64/usr/lib/python3.12/site-packages/hdmf/container.py:417: UserWarning: The table for this DynamicTableRegion has not been added to the parent. warn(msg) tests/unit/common/test_table.py: 20 warnings /builddir/build/BUILDROOT/python-hdmf-3.7.0-2.fc39.x86_64/usr/lib/python3.12/site-packages/hdmf/container.py:210: UserWarning: EnumData is experimental -- it may be removed in the future and is not guaranteed to maintain backward compatibility warn(_exp_warn_msg(cls)) tests/unit/utils_test/test_core_GenericDataChunkIterator.py::GenericDataChunkIteratorTests::test_progress_bar tests/unit/utils_test/test_core_GenericDataChunkIterator.py::GenericDataChunkIteratorTests::test_progress_bar tests/unit/utils_test/test_core_GenericDataChunkIterator.py::GenericDataChunkIteratorTests::test_progress_bar_assertion tests/unit/utils_test/test_core_GenericDataChunkIterator.py::GenericDataChunkIteratorTests::test_progress_bar_no_options tests/unit/utils_test/test_core_GenericDataChunkIterator.py::GenericDataChunkIteratorTests::test_progress_bar_no_options /usr/lib/python3.12/site-packages/tqdm/std.py:465: DeprecationWarning: datetime.utcfromtimestamp() is deprecated and scheduled for removal in a future version. Use timezone-aware objects to represent datetimes in UTC: datetime.fromtimestamp(timestamp, datetime.UTC). if rate and total else datetime.utcfromtimestamp(0)) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ========== 1406 passed, 29 skipped, 1 xfailed, 137 warnings in 13.27s ========== + RPM_EC=0 ++ jobs -p + exit 0 Processing files: python3-hdmf-3.7.0-2.fc39.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.omlSw9 + umask 022 + cd /builddir/build/BUILD + cd hdmf-3.7.0 + DOCDIR=/builddir/build/BUILDROOT/python-hdmf-3.7.0-2.fc39.x86_64/usr/share/doc/python3-hdmf + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/python-hdmf-3.7.0-2.fc39.x86_64/usr/share/doc/python3-hdmf + cp -pr /builddir/build/BUILD/hdmf-3.7.0/README.rst /builddir/build/BUILDROOT/python-hdmf-3.7.0-2.fc39.x86_64/usr/share/doc/python3-hdmf + cp -pr /builddir/build/BUILD/hdmf-3.7.0/Legal.txt /builddir/build/BUILDROOT/python-hdmf-3.7.0-2.fc39.x86_64/usr/share/doc/python3-hdmf + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.wa19qs + umask 022 + cd /builddir/build/BUILD + cd hdmf-3.7.0 + LICENSEDIR=/builddir/build/BUILDROOT/python-hdmf-3.7.0-2.fc39.x86_64/usr/share/licenses/python3-hdmf + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/python-hdmf-3.7.0-2.fc39.x86_64/usr/share/licenses/python3-hdmf + cp -pr /builddir/build/BUILD/hdmf-3.7.0/license.txt /builddir/build/BUILDROOT/python-hdmf-3.7.0-2.fc39.x86_64/usr/share/licenses/python3-hdmf + RPM_EC=0 ++ jobs -p + exit 0 warning: absolute symlink: /usr/lib/python3.12/site-packages/hdmf/common/hdmf-common-schema -> /usr/share/hdmf-common-schema/ Provides: python-hdmf = 3.7.0-2.fc39 python3-hdmf = 3.7.0-2.fc39 python3.12-hdmf = 3.7.0-2.fc39 python3.12dist(hdmf) = 3.7 python3dist(hdmf) = 3.7 Requires(rpmlib): rpmlib(BuiltinLuaScripts) <= 4.2.2-1 rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/python3 python(abi) = 3.12 python3.12dist(h5py) >= 2.10 python3.12dist(jsonschema) >= 2.6 python3.12dist(numpy) >= 1.18 python3.12dist(pandas) >= 1.0.5 python3.12dist(ruamel-yaml) >= 0.16 python3.12dist(scipy) >= 1.4 Processing files: python3-hdmf+zarr-3.7.0-2.fc39.noarch Provides: python-hdmf+zarr = 3.7.0-2.fc39 python3-hdmf+zarr = 3.7.0-2.fc39 python3.12-hdmf+zarr = 3.7.0-2.fc39 python3.12dist(hdmf[zarr]) = 3.7 python3dist(hdmf[zarr]) = 3.7 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: python(abi) = 3.12 python3.12dist(zarr) >= 2.12 Processing files: python3-hdmf+tqdm-3.7.0-2.fc39.noarch Provides: python-hdmf+tqdm = 3.7.0-2.fc39 python3-hdmf+tqdm = 3.7.0-2.fc39 python3.12-hdmf+tqdm = 3.7.0-2.fc39 python3.12dist(hdmf[tqdm]) = 3.7 python3dist(hdmf[tqdm]) = 3.7 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: python(abi) = 3.12 python3.12dist(tqdm) >= 4.41 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/python-hdmf-3.7.0-2.fc39.x86_64 Wrote: /builddir/build/SRPMS/python-hdmf-3.7.0-2.fc39.src.rpm Wrote: /builddir/build/RPMS/python3-hdmf+zarr-3.7.0-2.fc39.noarch.rpm Wrote: /builddir/build/RPMS/python3-hdmf+tqdm-3.7.0-2.fc39.noarch.rpm Wrote: /builddir/build/RPMS/python3-hdmf-3.7.0-2.fc39.noarch.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.EdxL0z + umask 022 + cd /builddir/build/BUILD + cd hdmf-3.7.0 + /usr/bin/rm -rf /builddir/build/BUILDROOT/python-hdmf-3.7.0-2.fc39.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.lkdxaU + umask 022 + cd /builddir/build/BUILD + rm -rf /builddir/build/BUILD/hdmf-3.7.0-SPECPARTS + rm -rf hdmf-3.7.0 hdmf-3.7.0.gemspec + RPM_EC=0 ++ jobs -p + exit 0 RPM build warnings: absolute symlink: /usr/lib/python3.12/site-packages/hdmf/common/hdmf-common-schema -> /usr/share/hdmf-common-schema/ Child return code was: 0