## START: Set by rpmautospec
## (rpmautospec version 0.3.5)
## RPMAUTOSPEC: autorelease, autochangelog
%define autorelease(e:s:pb:n) %{?-p:0.}%{lua:
    release_number = 1;
    base_release_number = tonumber(rpm.expand("%{?-b*}%{!?-b:1}"));
    print(release_number + base_release_number - 1);
}%{?-e:.%{-e*}}%{?-s:.%{-s*}}%{!?-n:%{?dist}}
## END: Set by rpmautospec

# No tests, they run examples for tests.
# https://github.com/Neurosim-lab/netpyne/blob/development/.travis.yml

# Some tests require optional pyneuroml, which cannot be packaged in Fedora.
# Refer to https://docs.fedoraproject.org/en-US/neurofedora/copr/ for more information.

# So these tests are disabled
# We add + enable the NeuroFedora COPR for pyneuroml in mock and run tests
# manually
# mock -r fedora-rawhide-x86_64 rebuild <srpm> --enablerepo=neurofedora-copr --with=pyneuroml

%bcond_with pyneuroml

# disable debuginfo
# sub package is noarch, but keep the main package archful to run tests on all arches.
%global debug_package  %{nil}

%global _description %{expand:
NetPyNE is a Python package to facilitate the development, simulation,
parallelization, analysis, and optimization of biological neuronal networks
using the NEURON simulator.

For more details, installation instructions, documentation, tutorials, forums,
videos and more, please visit: www.netpyne.org

This package is developed and maintained by the Neurosim lab
(www.neurosimlab.org) }

Name:           python-netpyne
Version:        1.0.4.2
Release:        %autorelease
Summary:        Develop, simulate and analyse biological neuronal networks in NEURON

# netpyne/support/stackedBarGraph.py is GPLv3+
# everything else is MIT
License:        MIT and GPLv3+
URL:            https://github.com/Neurosim-lab/netpyne/
Source0:        %{url}/archive/v%{version}/%{name}-%{version}.tar.gz
# Exclude tests/ from being installed as a top level module
# https://github.com/suny-downstate-medical-center/netpyne/pull/767
Patch:          https://github.com/suny-downstate-medical-center/netpyne/pull/767.patch

# https://fedoraproject.org/wiki/Changes/EncourageI686LeafRemoval
ExcludeArch:    %{ix86}

%description %_description

%package -n python3-netpyne
Summary:        %{summary}
# Main package is not noarch so that tests can be run on all platforms
# but the sub-package can be noarch
BuildArch:      noarch

BuildRequires:  gcc-g++
BuildRequires:  neuron-devel
BuildRequires:  python3-devel
BuildRequires:  python3-setuptools
BuildRequires:  python3-neuron
# skipped in setup.py
BuildRequires:  python3-dill

%if %{with pyneuroml}
BuildRequires:  %{py3_dist pyneuroml}
%endif

# Not mentioned in setup.py etc.
Requires:  %{py3_dist neuron}

# Optional dep in COPR, users will have to install it manually if they want to use its features
# Requires:  %%{py3_dist pyneuroml}

%description -n python3-netpyne %_description

%prep
%autosetup -p1 -n netpyne-%{version}

sed -i 's/matplotlib<=3.5.1/matplotlib/' setup.py

# None executable script
find . -type f -name "*.py" -exec sed -i '/^#![  ]*\/usr\/bin\/env.*$/ d' {} 2>/dev/null ';'

%generate_buildrequires
%pyproject_buildrequires

%build
%pyproject_wheel

%install
%pyproject_install
%pyproject_save_files netpyne

%check
# Do not test optional modules that have requirements not yet packaged in Fedora
# sbi: requires pytorch
%pyproject_check_import -e *optuna* -e *sbi*

export PYTHONPATH=$RPM_BUILD_ROOT/%{python3_sitelib}
pushd doc/source/code
nrnivmodl mod
%{python3} tut2.py --nogui || true
%{python3} tut3.py --nogui || true
%{python3} tut4.py --nogui || true
%{python3} tut5.py --nogui || true
%{python3} tut6.py --nogui || true
%{python3} tut7.py --nogui || true
popd

pushd examples/HHTut
%{python3} HHTut_run.py -nogui || true
%if %{with pyneuroml}
%{python3} HHTut_export.py -nogui || true
%endif
popd

pushd examples/HybridTut
nrnivmodl .
%{python3} HybridTut_run.py -nogui || true
%if %{with pyneuroml}
%{python3} HybridTut_export.py -nogui || true
%endif
popd

pushd examples/M1
nrnivmodl .
%{python3} M1_run.py -nogui || true
%if %{with pyneuroml}
%{python3} M1_export.py -nogui || true
%endif
popd

pushd examples/PTcell
nrnivmodl mod
%{python3} init.py -nogui || true
popd

pushd examples/LFPrecording
nrnivmodl mod
%{python3} cell_lfp.py -nogui || true
popd

pushd examples/saving
%{python3} init.py -nogui || true
popd

pushd examples/rxd_buffering
%{python3} buffering.py -nogui || true
popd

pushd examples/rxd_net/
nrnivmodl mod
%{python3} src/init.py -nogui || true
popd

%if %{with pyneuroml}
pushd examples/NeuroMLImport/
nrnivmodl .
%{python3} SimpleNet_import.py -nogui || true
popd
%endif

%files -n python3-netpyne -f %{pyproject_files}
%doc README.md CHANGES.md

%changelog
* Wed Jul 26 2023 Sandro <devel@penguinpee.nl> - 1.0.4.2-1
- Update to 1.0.4.2 (RHBZ#2226043)
- Apply patch to exclude tests from installation

* Tue Jul 25 2023 Python Maint <python-maint@redhat.com> - 1.0.4.1-3
- Rebuilt for Python 3.12

* Fri Jul 21 2023 Fedora Release Engineering <releng@fedoraproject.org> - 1.0.4.1-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_39_Mass_Rebuild

* Mon May 01 2023 Ankur Sinha (Ankur Sinha Gmail) <sanjay.ankur@gmail.com> - 1.0.4.1-1
- feat: update to 1.0.4.1 (fixes rhbz#2183286)

* Fri Feb 03 2023 Benjamin A. Beasley <code@musicinmybrain.net> - 1.0.3.1-3
- Leaf package on ix86: drop ix86 support

* Fri Jan 20 2023 Fedora Release Engineering <releng@fedoraproject.org> - 1.0.3.1-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_38_Mass_Rebuild

* Thu Jan 12 2023 Ankur Sinha (Ankur Sinha Gmail) <sanjay.ankur@gmail.com> - 1.0.3.1-1
- feat: update to 1.0.3.1 (fixes rhbz#2142245)

* Mon Aug 01 2022 Ankur Sinha (Ankur Sinha Gmail) <sanjay.ankur@gmail.com> - 1.0.2.1-1
- feat: update to 1.0.2. (fixes rhbz#2056106)

* Fri Jul 22 2022 Fedora Release Engineering <releng@fedoraproject.org> - 1.0.1-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild

* Thu Jun 23 2022 Python Maint <python-maint@redhat.com> - 1.0.1-2
- Rebuilt for Python 3.11

* Fri Feb 18 2022 Ankur Sinha (Ankur Sinha Gmail) <sanjay.ankur@gmail.com> - 1.0.1-1
- feat: update to 1.0.1

* Fri Feb 18 2022 Ankur Sinha (Ankur Sinha Gmail) <sanjay.ankur@gmail.com> - 1.0.0.2-6
- feat: run tests on all arches but make them informative only

* Fri Feb 18 2022 Ankur Sinha (Ankur Sinha Gmail) <sanjay.ankur@gmail.com> - 1.0.0.2-5
- feat: drop doc sub-package

* Fri Feb 18 2022 Ankur Sinha (Ankur Sinha Gmail) <sanjay.ankur@gmail.com> - 1.0.0.2-4
- feat: use pyproject macros and enable tests

* Fri Jan 21 2022 Fedora Release Engineering <releng@fedoraproject.org> - 1.0.0.2-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_36_Mass_Rebuild

* Mon Aug 16 2021 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 1.0.0.2-1
- Update to latest release

* Fri Jul 23 2021 Fedora Release Engineering <releng@fedoraproject.org> - 0.9.9.1-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild

* Fri Jun 04 2021 Python Maint <python-maint@redhat.com> - 0.9.9.1-2
- Rebuilt for Python 3.10

* Thu Mar 04 2021 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 0.9.9.1-1
- Update to latest upstream release

* Wed Jan 27 2021 Fedora Release Engineering <releng@fedoraproject.org> - 0.9.8-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_34_Mass_Rebuild

* Mon Nov 23 2020 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 0.9.8-1
- Update to latest release

* Tue Oct 13 2020 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 0.9.7-2.20201009git548ffc6
- Update license to include GPLv3+
- Add comment to explain why pyneuroml cannot be included in Fedora
- use python3 instead of __python3

* Fri Oct 09 2020 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 0.9.7-2.20201009git548ffc6
- Update to latest snapshot
- Remove unneeded BRs
- Document how to run with tests enabled in mock

* Thu Oct 08 2020 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 0.9.7-1
- Initial build